{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770989", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770989", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770989", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770989", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770991", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770991", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770991", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770991", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770994", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770994", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770994", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770994", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770995", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770995", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770995", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770995", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770996", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770996", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770996", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770996", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770997", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770997", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770997", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770997", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770998", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770998", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770998", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770998", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770999", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770999", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771000", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771000", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771000", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771000", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771001", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771001", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771002", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771002", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771008", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771008", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771008", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771008", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771010", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771010", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771010", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771010", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771011", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771011", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771011", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771011", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771014", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771014", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771014", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771014", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771015", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771015", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771015", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771015", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771016", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771016", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771016", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771016", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771017", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771017", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771017", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771017", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771018", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771018", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771018", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771018", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771019", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771019", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771019", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771019", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771020", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771020", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771020", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771020", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771021", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771021", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771021", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771021", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771022", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771022", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771022", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771022", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771023", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771023", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771023", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771023", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771024", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771024", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771024", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771024", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771025", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771025", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771025", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771025", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771026", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771026", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771026", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771026", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771027", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771027", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771027", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771027", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771028", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771028", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003160", "name": "MOPS medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS medium", "term_id": "MCO000003160", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771028", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771028", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770989", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770989", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770989", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770989", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770991", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770991", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770991", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770991", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770994", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770994", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770994", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770994", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770995", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770995", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770995", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770995", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770996", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770996", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770996", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770996", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770997", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770997", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770997", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770997", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770998", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770998", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770998", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770998", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770999", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770999", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771000", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771000", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771000", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771000", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771001", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771001", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771002", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771002", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771008", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771008", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771008", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771008", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771010", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771010", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771010", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771010", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771011", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771011", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771011", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771011", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771014", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771014", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771014", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771014", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771015", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771015", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771015", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771015", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771016", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771016", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771016", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771016", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771017", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771017", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771017", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771017", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771018", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771018", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771018", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771018", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771019", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771019", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771019", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771019", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771020", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771020", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771020", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771020", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771021", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771021", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771021", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771021", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771022", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771022", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771022", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771022", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771023", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771023", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771023", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771023", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771024", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771024", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771024", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771024", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771025", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771025", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771025", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771025", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771026", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771026", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771026", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771026", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771027", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771027", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771027", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771027", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771028", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771028", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771028", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771028", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461164", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 0.2 % glucose </Supp> and 10mM glutamate "}], "externalCrossReferences": [{"objectId": "GSM3461164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461165", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 0.2 % glucose </Supp> and 10mM glutamate "}], "externalCrossReferences": [{"objectId": "GSM3461165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461166", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 0.2 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3461166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137316", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137316", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137316", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137316", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137318", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137318", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137318", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137318", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137318", "field": "source_name", "associatedPhrase": "Cells at mid-log phase ( OD600nm 0.5 ) in W2 media supplemented with <Supp> 0.2 % glucose </Supp> and <Supp> 0.2 % glutamine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1137318", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137319", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137319", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137319", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137319", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137319", "field": "source_name", "associatedPhrase": "Cells at mid-log phase ( OD600nm 0.5 ) in W2 media supplemented with <Supp> 0.2 % glucose </Supp> and <Supp> 0.2 % glutamine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1137319", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137320", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137320", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137320", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137320", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137321", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137321", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137321", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137321", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE53767/GSE53767.soft.gz", "source": "GEO", "id": "GSM1300282", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with either full supplement ( Neidhardt et al. , 1974 ) . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 2.8-liter flask at 37C with aeration ( 180 rpm ) until OD600 reached 0.3 . "}], "externalCrossReferences": [{"objectId": "GSM1300282", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24766808"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE53767/GSE53767.soft.gz", "source": "GEO", "id": "GSM1300282", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with either full supplement ( Neidhardt et al. , 1974 ) . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 2.8-liter flask at 37C with aeration ( 180 rpm ) until OD600 reached 0.3 . "}], "externalCrossReferences": [{"objectId": "GSM1300282", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24766808"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326347", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326348", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326349", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326350", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326351", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326352", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326353", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326354", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58556/GSE58556.soft.gz", "source": "GEO", "id": "GSM1413874", "field": "growth_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli K-12 ( strain BW38038 ) and BW39452 ( \u0394rpoS ) cultures were grown on <Med> MOPS glucose minimal medium </Med> with <Supp> 0.2 % glucose </Supp> as sole carbon source at <Temp> 37 \u00b0C </Temp> , pH was initially 7.4 , and the agitation speed was 500 rpm . Culture samples were harvested during logarithmic growth and following entry into stationary phase for the WT and rpoS mutant . OD600 measurements were made on a Beckman Coulter DU 800 spectrophotometer . Samples were harvested directly into ice-cold RNAlater at a 1:1 dilution to protect RNA from degradation and cells then were pelleted by centrifugation at 8000rpm for 10 minutes . Cell pellets were stored at -80 \u00b0C in an equal volume of RNAlater prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1413874", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25483350"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602347", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602348", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602349", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602350", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602351", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602352", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602353", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602354", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602355", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602355", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602356", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602356", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602357", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602357", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602358", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602358", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603386", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603387", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603388", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603388", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603389", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603389", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603391", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603391", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603392", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603392", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603393", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623160", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623160", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623161", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623162", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623162", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623163", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623163", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623164", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623165", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623166", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623167", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623167", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462936", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with full supplement ( Neidhardt et al. , 1974 ) minus methionine . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 1 liter flask at <Temp> 37 \u00b0C </Temp> with aeration until OD420 reached 0.4 . "}], "externalCrossReferences": [{"objectId": "GSM2462936", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462936", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with full supplement ( Neidhardt et al. , 1974 ) minus methionine . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 1 liter flask at <Temp> 37 \u00b0C </Temp> with aeration until OD420 reached 0.4 . "}], "externalCrossReferences": [{"objectId": "GSM2462936", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462937", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with full supplement ( Neidhardt et al. , 1974 ) minus methionine . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 1 liter flask at <Temp> 37 \u00b0C </Temp> with aeration until OD420 reached 0.4 . "}], "externalCrossReferences": [{"objectId": "GSM2462937", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462937", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with full supplement ( Neidhardt et al. , 1974 ) minus methionine . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 1 liter flask at <Temp> 37 \u00b0C </Temp> with aeration until OD420 reached 0.4 . "}], "externalCrossReferences": [{"objectId": "GSM2462937", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462938", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with full supplement ( Neidhardt et al. , 1974 ) minus methionine . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 1 liter flask at <Temp> 37 \u00b0C </Temp> with aeration until OD420 reached 0.4 . "}], "externalCrossReferences": [{"objectId": "GSM2462938", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462938", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with full supplement ( Neidhardt et al. , 1974 ) minus methionine . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 1 liter flask at <Temp> 37 \u00b0C </Temp> with aeration until OD420 reached 0.4 . "}], "externalCrossReferences": [{"objectId": "GSM2462938", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356687", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356687", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356688", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356688", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356689", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356689", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356690", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356690", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002770", "name": "0.2 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glucose", "term_id": "MCO000002770", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "growth_protocol", "associatedPhrase": "Duplicate O/N cultures in LB with 15 mg/L chloramphenicol each of strains pCA24N,-gfp / DA4201 , Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were diluted 1:100 into two , four and four cultures of 20 mL M9 + <Supp> 0.2 % glucose </Supp> with 5 \u03bcg/mL chloramphenicol . The pCA24N,-gfp / DA4201 cultures and two cultures each of Svi3-3 comp . ( recoded Svi3-3 ) / DA4201 and pORF1/DA4201 were supplemented by 50 \u03bcM IPTG . The cells were grown to OD 0.15-0.2 and cells were withdrawn for RNA extraction and whole cell proteomics . "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770989", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770989", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770989", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2770989", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770989", "field": "characteristics", "associatedPhrase": "temperature : <Temp> 37 \u00b0C </Temp> "}], "externalCrossReferences": [{"objectId": "GSM2770989", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770991", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770991", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770991", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2770991", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770994", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770994", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770994", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2770994", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770995", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770995", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770995", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2770995", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770996", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770996", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770996", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2770996", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770997", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770997", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770997", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2770997", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770998", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770998", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770998", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2770998", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770999", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2770999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770999", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2770999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771000", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771000", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771000", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771000", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771001", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771001", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771001", "field": "characteristics", "associatedPhrase": "temperature : <Temp> 37 \u00b0C </Temp> "}], "externalCrossReferences": [{"objectId": "GSM2771001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771002", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771002", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771002", "field": "characteristics", "associatedPhrase": "temperature : <Temp> 37 \u00b0C </Temp> "}], "externalCrossReferences": [{"objectId": "GSM2771002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771008", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771008", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771008", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771008", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771010", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771010", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771010", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771010", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771011", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771011", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771011", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771011", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771014", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771014", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771014", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771014", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771015", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771015", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771015", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771015", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771016", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771016", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771016", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771016", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771017", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771017", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771017", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771017", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771018", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771018", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771018", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771018", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771019", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771019", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771019", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771019", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771020", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771020", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771020", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771020", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771021", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771021", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771021", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771021", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771022", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771022", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771022", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771022", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771023", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771023", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771023", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771023", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771024", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771024", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771024", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771024", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771025", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771025", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771025", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771025", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771026", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771026", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771026", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771026", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771027", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771027", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771027", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771027", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771028", "field": "growth_protocol", "associatedPhrase": "All culture experiments were performed in <Med> MOPS medium </Med> supplemented with <Supp> 0.2 % glucose </Supp> , 19 amino acids ( without methionine ) , vitamins , bases and micronutrients ( MOPS rich defined medium minus methionine , Teknova ) . Cells were grown in an overnight liquid culture at <Temp> 37 \u00b0C </Temp> , diluted to an OD420 = .001 in fresh medium and grown until OD420 reached 0.4 where samples were collected . For 10 \u00b0C samples , cultures were grown to OD420 = 1.1 at <Temp> 37 \u00b0C </Temp> and cold shock was performed by mixing 70mL of <Temp> 37 \u00b0C </Temp> culture with 130mL of 0 \u00b0C media pre-chilled in ice-water slurry , with continued growth of the culture in a 10 \u00b0C shaker . "}], "externalCrossReferences": [{"objectId": "GSM2771028", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771028", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of E. coli culture was incubated with 750 \u00b5L DMS . Incubation was performed for 2 min at <Temp> 37 \u00b0C </Temp> or for 45 min at 10 \u00b0C . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) , after which cells were quickly put on ice , collected by centrifugation at 8000 x g , 4 \u00b0C for 2 min , and washed with 8 mL 30 % BME solution . Cells were then resuspended in 450 \u00b5L total RNA lysis buffer ( 10 mM EDTA , 50 mM sodium acetate pH 5.5 ) , and total RNA was purified with hot acid phenol ( Ambion ) . "}], "externalCrossReferences": [{"objectId": "GSM2771028", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861128", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861128", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861129", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861129", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861132", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861132", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861137", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861137", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861142", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861142", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861145", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861145", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861152", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861152", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861153", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861153", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861155", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861155", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861159", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861159", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861160", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861160", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861163", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861163", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861165", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861166", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861173", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861173", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861178", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861178", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861182", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861182", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861191", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861191", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861192", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861192", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861207", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861207", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861209", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861209", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861214", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861214", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107093/GSE107093.soft.gz", "source": "GEO", "id": "GSM2861215", "field": "growth_protocol", "associatedPhrase": "E. coli cells with construct and control plasmids were grown at <Temp> 37 \u00b0C </Temp> overnight with aeration in a shaking incubator in 5 ml of defined supplemented M9 medium with the appropriate antibiotic . In the morning , 60 \u03bcl of each sample were diluted into 3 ml <Med> of fresh medium </Med> and grown at <Temp> 37 \u00b0C </Temp> with shaking for another hour ( outgrowth ) . 200 \u03bcl of each sample were then transferred in 8 wells of a 96-well plate ( Costar ) at approximately 0.1 OD ( 600 nm ) . The samples were placed in a Synergy HT Microplate Reader ( BioTek ) and incubated at <Temp> 37 \u00b0C </Temp> with orbital shaking at 1,000 rpm for 1 h , performing measurements of GFP ( excitation ( ex . ) , 485 nm ; emission ( em . ) , 528 nm ) and OD ( 600 nm ) every 15 minutes . "}], "externalCrossReferences": [{"objectId": "GSM2861215", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29578536"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107301/GSE107301.soft.gz", "source": "GEO", "id": "GSM2870440", "field": "extract_protocol", "associatedPhrase": "For 3C-seq : \u2248 1-2 x 109 crosslinked cells ( 7 % formaldehyde , unless otherwise stated ) are suspended in 600 \u03bcl Tris 10 mM EDTA 0.5 mM ( TE ) ( pH 8 ) with 4 \u03bcl of lysozyme ( 35 U/\u03bcl ; Tebu Bio ) , and incubated at RT for 20 minutes . SDS is added to the mix ( final concentration 0.5 % ) and the cells are incubated for 10 minutes at RT. 50\u03bcl of lysed cells are then transferred in 8 tubes containing 450\u03bcL of digestion mix ( 1X NEB 1 buffer , 1 % triton X-100 , and 100U HpaII enzyme ) . DNA is digested for 3 hours at <Temp> 37 \u00b0C </Temp> , split in 4 aliquots , and diluted in 8 ml ligation buffer ( 1X ligation buffer NEB without ATP , 1 mM ATP , 0.1 mg/ml BSA , 125 Units of T4 DNA ligase 5 U/\u03bcl ) . Ligation is then performed at 16 \u00b0C for 4 hours , followed by incubation overnight ( ON ) at 65 \u00b0C in presence of 250 \u03bcg/ml proteinase K and 5 mM EDTA . Precipitation of DNA is performed using an equal volume of 3 M Na-Acetate ( pH 5.2 ) and two volumes of iso-propanol . After one hour at -80 \u00b0C , DNA is pelleted , suspended in 500\u03bcl 1X TE buffer , and incubated for 30 minutes at <Temp> 37 \u00b0C </Temp> in presence of RNAse A ( 0.03 mg/ml ) . DNA is then transferred into 2 ml centrifuge tubes , extracted twice with 500 \u03bcl phenol-chloroform pH 8.0 , precipitated , washed with 1 ml cold ethanol 70 % and diluted in 30 \u03bcl 1X TE buffer . All tubes are pooled and the resulting 3C library is quantified on gel using Quantity One software ( BioRad ) . "}], "externalCrossReferences": [{"objectId": "GSM2870440", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29358050"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107301/GSE107301.soft.gz", "source": "GEO", "id": "GSM2870440", "field": "growth_protocol", "associatedPhrase": "E. coli cells were grown at 22 \u00b0C , 30 \u00b0C and <Temp> 37 \u00b0C </Temp> in either Lennox Broth ( LB ) or liquid minimal medium A supplemented with 0.12 % casamino acids and 0.4 % glucose . The cultures were grown to OD600 = 0.2 ( early exponential ) or 2 ( stationary phase ) . "}], "externalCrossReferences": [{"objectId": "GSM2870440", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29358050"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107301/GSE107301.soft.gz", "source": "GEO", "id": "GSM2870441", "field": "extract_protocol", "associatedPhrase": "For 3C-seq : \u2248 1-2 x 109 crosslinked cells ( 7 % formaldehyde , unless otherwise stated ) are suspended in 600 \u03bcl Tris 10 mM EDTA 0.5 mM ( TE ) ( pH 8 ) with 4 \u03bcl of lysozyme ( 35 U/\u03bcl ; Tebu Bio ) , and incubated at RT for 20 minutes . SDS is added to the mix ( final concentration 0.5 % ) and the cells are incubated for 10 minutes at RT. 50\u03bcl of lysed cells are then transferred in 8 tubes containing 450\u03bcL of digestion mix ( 1X NEB 1 buffer , 1 % triton X-100 , and 100U HpaII enzyme ) . DNA is digested for 3 hours at <Temp> 37 \u00b0C </Temp> , split in 4 aliquots , and diluted in 8 ml ligation buffer ( 1X ligation buffer NEB without ATP , 1 mM ATP , 0.1 mg/ml BSA , 125 Units of T4 DNA ligase 5 U/\u03bcl ) . Ligation is then performed at 16 \u00b0C for 4 hours , followed by incubation overnight ( ON ) at 65 \u00b0C in presence of 250 \u03bcg/ml proteinase K and 5 mM EDTA . Precipitation of DNA is performed using an equal volume of 3 M Na-Acetate ( pH 5.2 ) and two volumes of iso-propanol . After one hour at -80 \u00b0C , DNA is pelleted , suspended in 500\u03bcl 1X TE buffer , and incubated for 30 minutes at <Temp> 37 \u00b0C </Temp> in presence of RNAse A ( 0.03 mg/ml ) . DNA is then transferred into 2 ml centrifuge tubes , extracted twice with 500 \u03bcl phenol-chloroform pH 8.0 , precipitated , washed with 1 ml cold ethanol 70 % and diluted in 30 \u03bcl 1X TE buffer . All tubes are pooled and the resulting 3C library is quantified on gel using Quantity One software ( BioRad ) . "}], "externalCrossReferences": [{"objectId": "GSM2870441", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29358050"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107301/GSE107301.soft.gz", "source": "GEO", "id": "GSM2870441", "field": "growth_protocol", "associatedPhrase": "E. coli cells were grown at 22 \u00b0C , 30 \u00b0C and <Temp> 37 \u00b0C </Temp> in either Lennox Broth ( LB ) or liquid minimal medium A supplemented with 0.12 % casamino acids and 0.4 % glucose . The cultures were grown to OD600 = 0.2 ( early exponential ) or 2 ( stationary phase ) . "}], "externalCrossReferences": [{"objectId": "GSM2870441", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29358050"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107327/GSE107327.soft.gz", "source": "GEO", "id": "GSM2864853", "field": "growth_protocol", "associatedPhrase": "Separate E. coli colonies were picked from LB agar plates for each replicate . Overnight cultures ( 12-16 hrs ) were grown at <Temp> 37 \u00b0C </Temp> in M9 media supplemented with 0.1 % casamino acids , 0.4 % glycerol , 0.4 % glucose , 2 mM MgSO4 , and 0.1 mM CaCl2 . Overnight cultures were back diluted into fresh <Med> media </Med> and grown 3-4 hours to an <OD> OD600 of ~ 0.35 </OD> at <Temp> 37 \u00b0C </Temp> in an orbital shaker at 200 RPM . Cultures were centrifuged , washed , and back diluted into media lacking glucose . After at least 30 minutes of recovery Para was induced by adding arabinose to 0.2 % . Cells were harvested by centrifuging 1 mL of culture for 1 minute at maximum speed on a benchtop centrifuge . Pellets were immediately flash frozen in lN2 . "}], "externalCrossReferences": [{"objectId": "GSM2864853", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29861158"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107327/GSE107327.soft.gz", "source": "GEO", "id": "GSM2864853", "field": "growth_protocol", "associatedPhrase": "Separate E. coli colonies were picked from LB agar plates for each replicate . Overnight cultures ( 12-16 hrs ) were grown at <Temp> 37 \u00b0C </Temp> in M9 media supplemented with 0.1 % casamino acids , 0.4 % glycerol , 0.4 % glucose , 2 mM MgSO4 , and 0.1 mM CaCl2 . Overnight cultures were back diluted into fresh <Med> media </Med> and grown 3-4 hours to an <OD> OD600 of ~ 0.35 </OD> at <Temp> 37 \u00b0C </Temp> in an orbital shaker at 200 RPM . Cultures were centrifuged , washed , and back diluted into media lacking glucose . After at least 30 minutes of recovery Para was induced by adding arabinose to 0.2 % . Cells were harvested by centrifuging 1 mL of culture for 1 minute at maximum speed on a benchtop centrifuge . Pellets were immediately flash frozen in lN2 . "}], "externalCrossReferences": [{"objectId": "GSM2864853", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29861158"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107327/GSE107327.soft.gz", "source": "GEO", "id": "GSM2864854", "field": "growth_protocol", "associatedPhrase": "Separate E. coli colonies were picked from LB agar plates for each replicate . Overnight cultures ( 12-16 hrs ) were grown at <Temp> 37 \u00b0C </Temp> in M9 media supplemented with 0.1 % casamino acids , 0.4 % glycerol , 0.4 % glucose , 2 mM MgSO4 , and 0.1 mM CaCl2 . Overnight cultures were back diluted into fresh <Med> media </Med> and grown 3-4 hours to an <OD> OD600 of ~ 0.35 </OD> at <Temp> 37 \u00b0C </Temp> in an orbital shaker at 200 RPM . Cultures were centrifuged , washed , and back diluted into media lacking glucose . After at least 30 minutes of recovery Para was induced by adding arabinose to 0.2 % . Cells were harvested by centrifuging 1 mL of culture for 1 minute at maximum speed on a benchtop centrifuge . Pellets were immediately flash frozen in lN2 . "}], "externalCrossReferences": [{"objectId": "GSM2864854", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29861158"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107327/GSE107327.soft.gz", "source": "GEO", "id": "GSM2864854", "field": "growth_protocol", "associatedPhrase": "Separate E. coli colonies were picked from LB agar plates for each replicate . Overnight cultures ( 12-16 hrs ) were grown at <Temp> 37 \u00b0C </Temp> in M9 media supplemented with 0.1 % casamino acids , 0.4 % glycerol , 0.4 % glucose , 2 mM MgSO4 , and 0.1 mM CaCl2 . Overnight cultures were back diluted into fresh <Med> media </Med> and grown 3-4 hours to an <OD> OD600 of ~ 0.35 </OD> at <Temp> 37 \u00b0C </Temp> in an orbital shaker at 200 RPM . Cultures were centrifuged , washed , and back diluted into media lacking glucose . After at least 30 minutes of recovery Para was induced by adding arabinose to 0.2 % . Cells were harvested by centrifuging 1 mL of culture for 1 minute at maximum speed on a benchtop centrifuge . Pellets were immediately flash frozen in lN2 . "}], "externalCrossReferences": [{"objectId": "GSM2864854", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29861158"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107327/GSE107327.soft.gz", "source": "GEO", "id": "GSM2864855", "field": "growth_protocol", "associatedPhrase": "Separate E. coli colonies were picked from LB agar plates for each replicate . Overnight cultures ( 12-16 hrs ) were grown at <Temp> 37 \u00b0C </Temp> in M9 media supplemented with 0.1 % casamino acids , 0.4 % glycerol , 0.4 % glucose , 2 mM MgSO4 , and 0.1 mM CaCl2 . Overnight cultures were back diluted into fresh <Med> media </Med> and grown 3-4 hours to an <OD> OD600 of ~ 0.35 </OD> at <Temp> 37 \u00b0C </Temp> in an orbital shaker at 200 RPM . Cultures were centrifuged , washed , and back diluted into media lacking glucose . After at least 30 minutes of recovery Para was induced by adding arabinose to 0.2 % . Cells were harvested by centrifuging 1 mL of culture for 1 minute at maximum speed on a benchtop centrifuge . Pellets were immediately flash frozen in lN2 . "}], "externalCrossReferences": [{"objectId": "GSM2864855", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29861158"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107327/GSE107327.soft.gz", "source": "GEO", "id": "GSM2864855", "field": "growth_protocol", "associatedPhrase": "Separate E. coli colonies were picked from LB agar plates for each replicate . Overnight cultures ( 12-16 hrs ) were grown at <Temp> 37 \u00b0C </Temp> in M9 media supplemented with 0.1 % casamino acids , 0.4 % glycerol , 0.4 % glucose , 2 mM MgSO4 , and 0.1 mM CaCl2 . Overnight cultures were back diluted into fresh <Med> media </Med> and grown 3-4 hours to an <OD> OD600 of ~ 0.35 </OD> at <Temp> 37 \u00b0C </Temp> in an orbital shaker at 200 RPM . Cultures were centrifuged , washed , and back diluted into media lacking glucose . After at least 30 minutes of recovery Para was induced by adding arabinose to 0.2 % . Cells were harvested by centrifuging 1 mL of culture for 1 minute at maximum speed on a benchtop centrifuge . Pellets were immediately flash frozen in lN2 . "}], "externalCrossReferences": [{"objectId": "GSM2864855", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29861158"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107327/GSE107327.soft.gz", "source": "GEO", "id": "GSM2864856", "field": "growth_protocol", "associatedPhrase": "Separate E. coli colonies were picked from LB agar plates for each replicate . Overnight cultures ( 12-16 hrs ) were grown at <Temp> 37 \u00b0C </Temp> in M9 media supplemented with 0.1 % casamino acids , 0.4 % glycerol , 0.4 % glucose , 2 mM MgSO4 , and 0.1 mM CaCl2 . Overnight cultures were back diluted into fresh <Med> media </Med> and grown 3-4 hours to an <OD> OD600 of ~ 0.35 </OD> at <Temp> 37 \u00b0C </Temp> in an orbital shaker at 200 RPM . Cultures were centrifuged , washed , and back diluted into media lacking glucose . After at least 30 minutes of recovery Para was induced by adding arabinose to 0.2 % . Cells were harvested by centrifuging 1 mL of culture for 1 minute at maximum speed on a benchtop centrifuge . Pellets were immediately flash frozen in lN2 . "}], "externalCrossReferences": [{"objectId": "GSM2864856", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29861158"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107327/GSE107327.soft.gz", "source": "GEO", "id": "GSM2864856", "field": "growth_protocol", "associatedPhrase": "Separate E. coli colonies were picked from LB agar plates for each replicate . Overnight cultures ( 12-16 hrs ) were grown at <Temp> 37 \u00b0C </Temp> in M9 media supplemented with 0.1 % casamino acids , 0.4 % glycerol , 0.4 % glucose , 2 mM MgSO4 , and 0.1 mM CaCl2 . Overnight cultures were back diluted into fresh <Med> media </Med> and grown 3-4 hours to an <OD> OD600 of ~ 0.35 </OD> at <Temp> 37 \u00b0C </Temp> in an orbital shaker at 200 RPM . Cultures were centrifuged , washed , and back diluted into media lacking glucose . After at least 30 minutes of recovery Para was induced by adding arabinose to 0.2 % . Cells were harvested by centrifuging 1 mL of culture for 1 minute at maximum speed on a benchtop centrifuge . Pellets were immediately flash frozen in lN2 . "}], "externalCrossReferences": [{"objectId": "GSM2864856", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29861158"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914313", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914313", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914313", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914313", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914315", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914315", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914315", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914315", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914317", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914317", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914317", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914317", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914318", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914318", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914318", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914318", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914319", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914319", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914319", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914319", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914320", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914320", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914320", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914320", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914321", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914321", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914321", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914321", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914322", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914322", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914322", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914322", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914323", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914323", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914323", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914323", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914324", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914324", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914324", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914324", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914325", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914325", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914325", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914325", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914326", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914326", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914326", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914326", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914327", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914327", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914327", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914327", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914328", "field": "extract_protocol", "associatedPhrase": "RNA was extracted using Trizol and chloroform in conjunction with Qiagen 's RNeasy Mini kit ( Qiagen , Valencia , CA ) following the A. Untergasser protocol ( http://www.molbi.de/protocols/rna_prep_comb_trizol_v1_0.htm ) with one modification : <Gtype> Phase Lock Gel </Gtype> tubes ( Eppendorf , Westbury , NY ) were used to better separate organic and aqueous phases after the addition of chloroform . DNA was digested with Ambion rDNAse I ( Life Technologies , Carlsbad , CA ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . Total RNA was further cleaned using the RNeasy Mini kit and quality was assessed by the RNA ScreenTape Assay on the TapeStation 2200 ( Agilent Technologies , Santa Clara , CA ) . Samples with RIN values greater than 8.0 were treated with the Ambion MICROBExpress Bacterial mRNA Enrichment Kit ( Life Technologies , Carlsbad , CA ) and were used for library construction . "}], "externalCrossReferences": [{"objectId": "GSM2914328", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914328", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914328", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114917/GSE114917.soft.gz", "source": "GEO", "id": "GSM3154484", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG 1655 was grown in LB-Miller broth at <Temp> 37 \u00b0C </Temp> ,160 rpm to an O.D. 600 nm of 0 . 7 "}], "externalCrossReferences": [{"objectId": "GSM3154484", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30016375"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114917/GSE114917.soft.gz", "source": "GEO", "id": "GSM3154485", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG 1655 was grown in LB-Miller broth at <Temp> 37 \u00b0C </Temp> ,160 rpm to an O.D. 600 nm of 0 . 7 "}], "externalCrossReferences": [{"objectId": "GSM3154485", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30016375"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114917/GSE114917.soft.gz", "source": "GEO", "id": "GSM3154486", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG 1655 was grown in LB-Miller broth at <Temp> 37 \u00b0C </Temp> ,160 rpm to an O.D. 600 nm of 0 . 7 "}], "externalCrossReferences": [{"objectId": "GSM3154486", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30016375"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114917/GSE114917.soft.gz", "source": "GEO", "id": "GSM3154487", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG 1655 was grown in LB-Miller broth at <Temp> 37 \u00b0C </Temp> ,160 rpm to an O.D. 600 nm of 0 . 7 "}], "externalCrossReferences": [{"objectId": "GSM3154487", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30016375"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114917/GSE114917.soft.gz", "source": "GEO", "id": "GSM3154488", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG 1655 was grown in LB-Miller broth at <Temp> 37 \u00b0C </Temp> ,160 rpm to an O.D. 600 nm of 0 . 7 "}], "externalCrossReferences": [{"objectId": "GSM3154488", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30016375"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114917/GSE114917.soft.gz", "source": "GEO", "id": "GSM3154489", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG 1655 was grown in LB-Miller broth at <Temp> 37 \u00b0C </Temp> ,160 rpm to an O.D. 600 nm of 0 . 7 "}], "externalCrossReferences": [{"objectId": "GSM3154489", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30016375"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114917/GSE114917.soft.gz", "source": "GEO", "id": "GSM3154490", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG 1655 was grown in LB-Miller broth at <Temp> 37 \u00b0C </Temp> ,160 rpm to an O.D. 600 nm of 0 . 7 "}], "externalCrossReferences": [{"objectId": "GSM3154490", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30016375"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114917/GSE114917.soft.gz", "source": "GEO", "id": "GSM3154491", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG 1655 was grown in LB-Miller broth at <Temp> 37 \u00b0C </Temp> ,160 rpm to an O.D. 600 nm of 0 . 7 "}], "externalCrossReferences": [{"objectId": "GSM3154491", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30016375"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291044", "field": "growth_protocol", "associatedPhrase": "Plasmid pLCenvZ or pLCenvZM was co-transformed with pPCB into the competent cells of E. coli JW3367 and spread on LB agar plates containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) at <Temp> 37 \u00b0C </Temp> overnight . A single colony was diluted in 2.5 ml LB medium containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) and was shaken at 250 rpm and <Temp> 37 \u00b0C </Temp> overnight . "}], "externalCrossReferences": [{"objectId": "GSM3291044", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291045", "field": "growth_protocol", "associatedPhrase": "Plasmid pLCenvZ or pLCenvZM was co-transformed with pPCB into the competent cells of E. coli JW3367 and spread on LB agar plates containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) at <Temp> 37 \u00b0C </Temp> overnight . A single colony was diluted in 2.5 ml LB medium containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) and was shaken at 250 rpm and <Temp> 37 \u00b0C </Temp> overnight . "}], "externalCrossReferences": [{"objectId": "GSM3291045", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291049", "field": "growth_protocol", "associatedPhrase": "Plasmid pLCenvZ or pLCenvZM was co-transformed with pPCB into the competent cells of E. coli JW3367 and spread on LB agar plates containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) at <Temp> 37 \u00b0C </Temp> overnight . A single colony was diluted in 2.5 ml LB medium containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) and was shaken at 250 rpm and <Temp> 37 \u00b0C </Temp> overnight . "}], "externalCrossReferences": [{"objectId": "GSM3291049", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291050", "field": "growth_protocol", "associatedPhrase": "Plasmid pLCenvZ or pLCenvZM was co-transformed with pPCB into the competent cells of E. coli JW3367 and spread on LB agar plates containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) at <Temp> 37 \u00b0C </Temp> overnight . A single colony was diluted in 2.5 ml LB medium containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) and was shaken at 250 rpm and <Temp> 37 \u00b0C </Temp> overnight . "}], "externalCrossReferences": [{"objectId": "GSM3291050", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291051", "field": "growth_protocol", "associatedPhrase": "Plasmid pLCenvZ or pLCenvZM was co-transformed with pPCB into the competent cells of E. coli JW3367 and spread on LB agar plates containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) at <Temp> 37 \u00b0C </Temp> overnight . A single colony was diluted in 2.5 ml LB medium containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) and was shaken at 250 rpm and <Temp> 37 \u00b0C </Temp> overnight . "}], "externalCrossReferences": [{"objectId": "GSM3291051", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291052", "field": "growth_protocol", "associatedPhrase": "Plasmid pLCenvZ or pLCenvZM was co-transformed with pPCB into the competent cells of E. coli JW3367 and spread on LB agar plates containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) at <Temp> 37 \u00b0C </Temp> overnight . A single colony was diluted in 2.5 ml LB medium containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) and was shaken at 250 rpm and <Temp> 37 \u00b0C </Temp> overnight . "}], "externalCrossReferences": [{"objectId": "GSM3291052", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291054", "field": "growth_protocol", "associatedPhrase": "Plasmid pLCenvZ or pLCenvZM was co-transformed with pPCB into the competent cells of E. coli JW3367 and spread on LB agar plates containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) at <Temp> 37 \u00b0C </Temp> overnight . A single colony was diluted in 2.5 ml LB medium containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) and was shaken at 250 rpm and <Temp> 37 \u00b0C </Temp> overnight . "}], "externalCrossReferences": [{"objectId": "GSM3291054", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291055", "field": "growth_protocol", "associatedPhrase": "Plasmid pLCenvZ or pLCenvZM was co-transformed with pPCB into the competent cells of E. coli JW3367 and spread on LB agar plates containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) at <Temp> 37 \u00b0C </Temp> overnight . A single colony was diluted in 2.5 ml LB medium containing Ampicillin ( 50 ng/\u03bcl ) and Chloramphenicol ( 170 ng/\u03bcl ) and was shaken at 250 rpm and <Temp> 37 \u00b0C </Temp> overnight . "}], "externalCrossReferences": [{"objectId": "GSM3291055", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "extract_protocol", "associatedPhrase": "For the RNA-seq samples , the E. coli cells were quenched by adding 0.5 volume of cold Stop Buffer ( 5 % phenol in ethanol ) immediately to the culture medium before harvest and stay on the ice for 15 minutes . Cell pellets were collected by centrifugation ( 6,000 rpm , 5 minutes at 4 \u00b0C ) , thoroughly resuspended in 100 \u03bcl of lysozyme solution [ 2 mg/ml in TE buffer ( 10 mM Tris-HCl and 1 mM EDTA ) ] , and incubated for 2 minutes . The cells were immediately lysed by adding 1 ml of TRIzol Reagent ( Invitrogen , 15596 ) and the RNA was extracted following manufacture 's instruction . For the ChIP-seq samples , the E. coli cells were fixed with 1 % formaldehyde with continued shaking at <Temp> 37 \u00b0C </Temp> for 10 minutes before quenching with glycine ( 100 mM final concentration ) . Cells were then lysed and DNA was sheared by sonication followed by the treatment with micrococcal nuclease and RNase A. Antibody against RNAP \u03b2 was used for target DNA enrichment . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "characteristics", "associatedPhrase": "treatment : <Temp> 37 \u00b0C </Temp> culture "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "extract_protocol", "associatedPhrase": "For the RNA-seq samples , the E. coli cells were quenched by adding 0.5 volume of cold Stop Buffer ( 5 % phenol in ethanol ) immediately to the culture medium before harvest and stay on the ice for 15 minutes . Cell pellets were collected by centrifugation ( 6,000 rpm , 5 minutes at 4 \u00b0C ) , thoroughly resuspended in 100 \u03bcl of lysozyme solution [ 2 mg/ml in TE buffer ( 10 mM Tris-HCl and 1 mM EDTA ) ] , and incubated for 2 minutes . The cells were immediately lysed by adding 1 ml of TRIzol Reagent ( Invitrogen , 15596 ) and the RNA was extracted following manufacture 's instruction . For the ChIP-seq samples , the E. coli cells were fixed with 1 % formaldehyde with continued shaking at <Temp> 37 \u00b0C </Temp> for 10 minutes before quenching with glycine ( 100 mM final concentration ) . Cells were then lysed and DNA was sheared by sonication followed by the treatment with micrococcal nuclease and RNase A. Antibody against RNAP \u03b2 was used for target DNA enrichment . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "characteristics", "associatedPhrase": "treatment : <Temp> 37 \u00b0C </Temp> culture "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "extract_protocol", "associatedPhrase": "For the RNA-seq samples , the E. coli cells were quenched by adding 0.5 volume of cold Stop Buffer ( 5 % phenol in ethanol ) immediately to the culture medium before harvest and stay on the ice for 15 minutes . Cell pellets were collected by centrifugation ( 6,000 rpm , 5 minutes at 4 \u00b0C ) , thoroughly resuspended in 100 \u03bcl of lysozyme solution [ 2 mg/ml in TE buffer ( 10 mM Tris-HCl and 1 mM EDTA ) ] , and incubated for 2 minutes . The cells were immediately lysed by adding 1 ml of TRIzol Reagent ( Invitrogen , 15596 ) and the RNA was extracted following manufacture 's instruction . For the ChIP-seq samples , the E. coli cells were fixed with 1 % formaldehyde with continued shaking at <Temp> 37 \u00b0C </Temp> for 10 minutes before quenching with glycine ( 100 mM final concentration ) . Cells were then lysed and DNA was sheared by sonication followed by the treatment with micrococcal nuclease and RNase A. Antibody against RNAP \u03b2 was used for target DNA enrichment . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "characteristics", "associatedPhrase": "treatment : <Temp> 37 \u00b0C </Temp> culture "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "extract_protocol", "associatedPhrase": "For the RNA-seq samples , the E. coli cells were quenched by adding 0.5 volume of cold Stop Buffer ( 5 % phenol in ethanol ) immediately to the culture medium before harvest and stay on the ice for 15 minutes . Cell pellets were collected by centrifugation ( 6,000 rpm , 5 minutes at 4 \u00b0C ) , thoroughly resuspended in 100 \u03bcl of lysozyme solution [ 2 mg/ml in TE buffer ( 10 mM Tris-HCl and 1 mM EDTA ) ] , and incubated for 2 minutes . The cells were immediately lysed by adding 1 ml of TRIzol Reagent ( Invitrogen , 15596 ) and the RNA was extracted following manufacture 's instruction . For the ChIP-seq samples , the E. coli cells were fixed with 1 % formaldehyde with continued shaking at <Temp> 37 \u00b0C </Temp> for 10 minutes before quenching with glycine ( 100 mM final concentration ) . Cells were then lysed and DNA was sheared by sonication followed by the treatment with micrococcal nuclease and RNase A. Antibody against RNAP \u03b2 was used for target DNA enrichment . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "characteristics", "associatedPhrase": "treatment : <Temp> 37 \u00b0C </Temp> culture "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461156", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3461156", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461157", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3461157", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461164", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3461164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461165", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3461165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461166", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3461166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463565", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463565", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463566", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463566", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463567", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463567", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463568", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463568", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463569", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463569", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463570", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463570", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463571", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463571", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463572", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463572", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463573", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463573", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463574", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463574", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463575", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463575", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463576", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463576", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463577", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463577", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463578", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463578", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463579", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463579", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463580", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463580", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463581", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463581", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463582", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463582", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463583", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463583", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463584", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463584", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463585", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463585", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463586", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463586", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463587", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463587", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463588", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463588", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854833", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3854833", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854834", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3854834", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854835", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3854835", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854836", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3854836", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854837", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3854837", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854838", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3854838", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122296/GSE122296.soft.gz", "source": "GEO", "id": "GSM3463601", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463601", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122296/GSE122296.soft.gz", "source": "GEO", "id": "GSM3463602", "field": "extract_protocol", "associatedPhrase": "After inoculation and growth , 3 mL of cell broth ( OD600 ~ 0.5 ) was immediately added to 2 volumes Qiagen RNA-protect Bacteria Reagent ( 6 mL ) , vortexed for 5 seconds , incubated at room temperature for 5 min , and immediately centrifuged for 10 min at 17,500 RPMs . The supernatant was decanted , and the cell pellet was stored in the -80 \u00b0C . Cell pellets were thawed and incubated with Readylyse Lysozyme , SuperaseIn , Protease K , and 20 % SDS for 20 minutes at <Temp> 37 \u00b0C </Temp> . Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit columns and following vendor procedures . An on-column DNase-treatment was performed for 30 minutes at room temperature . RNA was quantified using a Nano drop and quality assessed by running an RNA-nano chip on a bioanalyzer . The rRNA was removed using Illumina Ribo-Zero rRNA removal kit for Gram Negative Bacteria . A KAPA Stranded RNA-Seq Kit ( Kapa Biosystems KK8401 ) was used following the manufacturer 's protocol to create sequencing libraries with an average insert length of around ~ 300 bp . "}], "externalCrossReferences": [{"objectId": "GSM3463602", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507068", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394fis and \u0394hns were grown in Luria-Bertani ( LB ) broth and agar ( 15g/l ) . Where needed , kanamycin was used at final concentration of 50\u00b5g/ml . For RNA extraction , E. coli cultures were grown to mid-exponential growth phase <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with 40 % ( w/v ) glucose . "}], "externalCrossReferences": [{"objectId": "GSM3507068", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507069", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394fis and \u0394hns were grown in Luria-Bertani ( LB ) broth and agar ( 15g/l ) . Where needed , kanamycin was used at final concentration of 50\u00b5g/ml . For RNA extraction , E. coli cultures were grown to mid-exponential growth phase <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with 40 % ( w/v ) glucose . "}], "externalCrossReferences": [{"objectId": "GSM3507069", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507070", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394fis and \u0394hns were grown in Luria-Bertani ( LB ) broth and agar ( 15g/l ) . Where needed , kanamycin was used at final concentration of 50\u00b5g/ml . For RNA extraction , E. coli cultures were grown to mid-exponential growth phase <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with 40 % ( w/v ) glucose . "}], "externalCrossReferences": [{"objectId": "GSM3507070", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507071", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394fis and \u0394hns were grown in Luria-Bertani ( LB ) broth and agar ( 15g/l ) . Where needed , kanamycin was used at final concentration of 50\u00b5g/ml . For RNA extraction , E. coli cultures were grown to mid-exponential growth phase <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with 40 % ( w/v ) glucose . "}], "externalCrossReferences": [{"objectId": "GSM3507071", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611666", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . The RNA preparations were further treated with RiboZero ( Illumina ) and the concentration of the samples was determined with Qubit . "}], "externalCrossReferences": [{"objectId": "GSM3611666", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611667", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . The RNA preparations were further treated with RiboZero ( Illumina ) and the concentration of the samples was determined with Qubit . "}], "externalCrossReferences": [{"objectId": "GSM3611667", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611668", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . The RNA preparations were further treated with RiboZero ( Illumina ) and the concentration of the samples was determined with Qubit . "}], "externalCrossReferences": [{"objectId": "GSM3611668", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611669", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . The RNA preparations were further treated with RiboZero ( Illumina ) and the concentration of the samples was determined with Qubit . "}], "externalCrossReferences": [{"objectId": "GSM3611669", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611670", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . The RNA preparations were further treated with RiboZero ( Illumina ) and the concentration of the samples was determined with Qubit . "}], "externalCrossReferences": [{"objectId": "GSM3611670", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611671", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . The RNA preparations were further treated with RiboZero ( Illumina ) and the concentration of the samples was determined with Qubit . "}], "externalCrossReferences": [{"objectId": "GSM3611671", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611672", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . The RNA preparations were further treated with RiboZero ( Illumina ) and the concentration of the samples was determined with Qubit . "}], "externalCrossReferences": [{"objectId": "GSM3611672", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611673", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . The RNA preparations were further treated with RiboZero ( Illumina ) and the concentration of the samples was determined with Qubit . "}], "externalCrossReferences": [{"objectId": "GSM3611673", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611674", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . The RNA preparations were further treated with RiboZero ( Illumina ) and the concentration of the samples was determined with Qubit . "}], "externalCrossReferences": [{"objectId": "GSM3611674", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275442", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275442", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275442", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275442", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275442", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275442", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275443", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275443", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275443", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275443", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275443", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275443", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275444", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275444", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275444", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275444", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275444", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275444", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275446", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275446", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275446", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275446", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275446", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275446", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275447", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275447", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275447", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275447", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275447", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275447", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275448", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275448", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275448", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275448", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275448", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275448", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275450", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275450", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275450", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275450", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275450", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275450", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275451", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275451", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275451", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275451", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275451", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275451", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275454", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275454", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275454", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275454", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275454", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275454", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275455", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275455", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275455", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275455", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275455", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275455", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275456", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275456", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275456", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275456", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275456", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275456", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275457", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275457", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275457", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275457", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275457", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275457", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275458", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275458", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275458", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275458", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275458", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275458", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275459", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275459", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275459", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275459", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275459", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275459", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275460", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275460", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275460", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275460", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275460", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275460", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275461", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275461", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275461", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275461", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275461", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275461", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275462", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275462", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275462", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275462", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275462", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275462", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275463", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275463", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275463", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275463", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275463", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275463", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275464", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275464", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275464", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275464", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275464", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275464", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275465", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275465", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275465", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275465", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275465", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275465", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275466", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275466", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275466", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275466", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275466", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275466", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275467", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275467", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275467", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275467", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275467", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275467", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275469", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275469", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275469", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275469", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275469", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275469", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275470", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275470", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275470", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275471", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275471", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275471", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275471", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275471", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275471", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275472", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275472", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275472", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275473", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275473", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275473", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275473", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275473", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275473", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832606", "field": "growth_protocol", "associatedPhrase": "An overnight culture was diluted to an <OD> OD600 of 0.02 </OD> in <Med> LB media </Med> supplemented with 100 \u00b5g/ml of carbenicillin , 40 \u00b5g/ml biotin , and <Supp> 70 \u00b5M IPTG </Supp> . The back diluted culture was grown at <Temp> 37 \u00b0C </Temp> until reaching an OD600 of 0.45 . "}], "externalCrossReferences": [{"objectId": "GSM832606", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832607", "field": "growth_protocol", "associatedPhrase": "An overnight culture was diluted to an <OD> OD600 of 0.02 </OD> in <Med> LB media </Med> supplemented with 100 \u00b5g/ml of carbenicillin , 40 \u00b5g/ml biotin , and <Supp> 70 \u00b5M IPTG </Supp> . The back diluted culture was grown at <Temp> 37 \u00b0C </Temp> until reaching an OD600 of 0.45 . "}], "externalCrossReferences": [{"objectId": "GSM832607", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832608", "field": "growth_protocol", "associatedPhrase": "An overnight culture was diluted to an <OD> OD600 of 0.02 </OD> in <Med> LB media </Med> supplemented with 100 \u00b5g/ml of carbenicillin , 40 \u00b5g/ml biotin , and <Supp> 70 \u00b5M IPTG </Supp> . The back diluted culture was grown at <Temp> 37 \u00b0C </Temp> until reaching an OD600 of 0.45 . "}], "externalCrossReferences": [{"objectId": "GSM832608", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832609", "field": "growth_protocol", "associatedPhrase": "An overnight culture was diluted to an <OD> OD600 of 0.02 </OD> in <Med> LB media </Med> supplemented with 100 \u00b5g/ml of carbenicillin , 40 \u00b5g/ml biotin , and <Supp> 70 \u00b5M IPTG </Supp> . The back diluted culture was grown at <Temp> 37 \u00b0C </Temp> until reaching an OD600 of 0.45 . "}], "externalCrossReferences": [{"objectId": "GSM832609", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832610", "field": "growth_protocol", "associatedPhrase": "An overnight culture was diluted to an <OD> OD600 of 0.02 </OD> in <Med> LB media </Med> supplemented with 100 \u00b5g/ml of carbenicillin , 40 \u00b5g/ml biotin , and <Supp> 70 \u00b5M IPTG </Supp> . The back diluted culture was grown at <Temp> 37 \u00b0C </Temp> until reaching an OD600 of 0.45 . "}], "externalCrossReferences": [{"objectId": "GSM832610", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832611", "field": "growth_protocol", "associatedPhrase": "An overnight culture was diluted to an <OD> OD600 of 0.02 </OD> in <Med> LB media </Med> supplemented with 100 \u00b5g/ml of carbenicillin , 40 \u00b5g/ml biotin , and <Supp> 70 \u00b5M IPTG </Supp> . The back diluted culture was grown at <Temp> 37 \u00b0C </Temp> until reaching an OD600 of 0.45 . "}], "externalCrossReferences": [{"objectId": "GSM832611", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832612", "field": "growth_protocol", "associatedPhrase": "An overnight culture was diluted to an <OD> OD600 of 0.02 </OD> in <Med> LB media </Med> supplemented with 100 \u00b5g/ml of carbenicillin , 40 \u00b5g/ml biotin , and <Supp> 70 \u00b5M IPTG </Supp> . The back diluted culture was grown at <Temp> 37 \u00b0C </Temp> until reaching an OD600 of 0.45 . "}], "externalCrossReferences": [{"objectId": "GSM832612", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832613", "field": "growth_protocol", "associatedPhrase": "An overnight culture was diluted to an <OD> OD600 of 0.02 </OD> in <Med> LB media </Med> supplemented with 100 \u00b5g/ml of carbenicillin , 40 \u00b5g/ml biotin , and <Supp> 70 \u00b5M IPTG </Supp> . The back diluted culture was grown at <Temp> 37 \u00b0C </Temp> until reaching an OD600 of 0.45 . "}], "externalCrossReferences": [{"objectId": "GSM832613", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE43408/GSE43408.soft.gz", "source": "GEO", "id": "GSM1217967", "field": "treatment_protocol", "associatedPhrase": "Total RNA was isolated with TRIzol ( invitrogen , Carlsbad , CA ) according to the manufacture [ linebreak ] s instruction . DNA was removed from RNA extracts with RNase-free DNase I ( New England Biolabs , Beverly , MA , USA ) by incubation at <Temp> 37 \u00b0C </Temp> for <Supp> 30 min </Supp> . The quality of total RNA was assessed by using 2100 Bioanalyzer ( Agilent , Santa Clara , USA ) and also checked by agarose gel electrophoresis . rRNAs was subsquently removed from the total mRNA following the instruction of the Ribo-Zero rRNATM Removal kit ( Epicentre , Madison , WI , USA ) . "}], "externalCrossReferences": [{"objectId": "GSM1217967", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23856776"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE43408/GSE43408.soft.gz", "source": "GEO", "id": "GSM1217968", "field": "treatment_protocol", "associatedPhrase": "Total RNA was isolated with TRIzol ( invitrogen , Carlsbad , CA ) according to the manufacture [ linebreak ] s instruction . DNA was removed from RNA extracts with RNase-free DNase I ( New England Biolabs , Beverly , MA , USA ) by incubation at <Temp> 37 \u00b0C </Temp> for <Supp> 30 min </Supp> . The quality of total RNA was assessed by using 2100 Bioanalyzer ( Agilent , Santa Clara , USA ) and also checked by agarose gel electrophoresis . rRNAs was subsquently removed from the total mRNA following the instruction of the Ribo-Zero rRNATM Removal kit ( Epicentre , Madison , WI , USA ) . "}], "externalCrossReferences": [{"objectId": "GSM1217968", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23856776"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE43408/GSE43408.soft.gz", "source": "GEO", "id": "GSM1217969", "field": "treatment_protocol", "associatedPhrase": "Total RNA was isolated with TRIzol ( invitrogen , Carlsbad , CA ) according to the manufacture [ linebreak ] s instruction . DNA was removed from RNA extracts with RNase-free DNase I ( New England Biolabs , Beverly , MA , USA ) by incubation at <Temp> 37 \u00b0C </Temp> for <Supp> 30 min </Supp> . The quality of total RNA was assessed by using 2100 Bioanalyzer ( Agilent , Santa Clara , USA ) and also checked by agarose gel electrophoresis . rRNAs was subsquently removed from the total mRNA following the instruction of the Ribo-Zero rRNATM Removal kit ( Epicentre , Madison , WI , USA ) . "}], "externalCrossReferences": [{"objectId": "GSM1217969", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23856776"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE43408/GSE43408.soft.gz", "source": "GEO", "id": "GSM1217970", "field": "treatment_protocol", "associatedPhrase": "Total RNA was isolated with TRIzol ( invitrogen , Carlsbad , CA ) according to the manufacture [ linebreak ] s instruction . DNA was removed from RNA extracts with RNase-free DNase I ( New England Biolabs , Beverly , MA , USA ) by incubation at <Temp> 37 \u00b0C </Temp> for <Supp> 30 min </Supp> . The quality of total RNA was assessed by using 2100 Bioanalyzer ( Agilent , Santa Clara , USA ) and also checked by agarose gel electrophoresis . rRNAs was subsquently removed from the total mRNA following the instruction of the Ribo-Zero rRNATM Removal kit ( Epicentre , Madison , WI , USA ) . "}], "externalCrossReferences": [{"objectId": "GSM1217970", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23856776"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104381", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104381", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104386", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104387", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104388", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104388", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104389", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104389", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104390", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104390", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104391", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104391", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104392", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104392", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104393", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104394", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104395", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104396", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104397", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104397", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104398", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104398", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104399", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104399", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104400", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104400", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104401", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104401", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104402", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104402", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104403", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104403", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104404", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104404", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104405", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104405", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104406", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104406", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104407", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104407", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104408", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104408", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104410", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104410", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104411", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104411", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104412", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104412", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104413", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104413", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104414", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104414", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104415", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104415", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104416", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104416", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104417", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104417", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104418", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104418", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104419", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104419", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104420", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104420", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104421", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104421", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104422", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104422", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104423", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104423", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104424", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104424", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104425", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104425", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104426", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104426", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104427", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104427", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104428", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104428", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174823", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174823", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174824", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174824", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174825", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174825", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174826", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174826", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174827", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174827", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174828", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174828", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174829", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174829", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174830", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174830", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174831", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174831", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174832", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174832", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174833", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174833", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174834", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174834", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174835", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174835", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174836", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174836", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326347", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326348", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326349", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326350", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326351", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326352", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326353", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326354", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360031", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360031", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360032", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360032", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360033", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360033", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360034", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360034", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360035", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360035", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360036", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360036", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360037", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360037", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360038", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360038", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360039", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360039", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360040", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360040", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360041", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360041", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360042", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360042", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360042", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360042", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360043", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360043", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360043", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360043", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360044", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360044", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360044", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360044", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360045", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360045", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360045", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360045", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360046", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360046", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360046", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360046", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360047", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360047", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360047", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360047", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360048", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360048", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360048", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360048", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360049", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360049", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360049", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360049", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360050", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360050", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360050", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360050", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360051", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360051", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360051", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360051", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360052", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360052", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360052", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360052", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360053", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360053", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360053", "field": "growth_protocol", "associatedPhrase": "Cultures were grown aerobically at <Temp> 37 \u00b0C </Temp> in 1 L volumes of M9 minimal medium , supplemented with MgSO4 ( 1 mM ) , CaCl2 ( 0.1 mM ) , and glucose ( 10 g/L ) in vigorously shaken ( 225 rpm ) Fernbach flasks . "}], "externalCrossReferences": [{"objectId": "GSM1360053", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58285/GSE58285.soft.gz", "source": "GEO", "id": "GSM1405877", "field": "growth_protocol", "associatedPhrase": "All cultures grown up to 0.6 OD600 with shaking at 200 rpm . Samples 1,2,5 and 6 were grown at 30 \u00b0C whereas samples 3 and 4 were grown at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM1405877", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25237058"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58285/GSE58285.soft.gz", "source": "GEO", "id": "GSM1405878", "field": "growth_protocol", "associatedPhrase": "All cultures grown up to 0.6 OD600 with shaking at 200 rpm . Samples 1,2,5 and 6 were grown at 30 \u00b0C whereas samples 3 and 4 were grown at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM1405878", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25237058"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58285/GSE58285.soft.gz", "source": "GEO", "id": "GSM1405879", "field": "growth_protocol", "associatedPhrase": "All cultures grown up to 0.6 OD600 with shaking at 200 rpm . Samples 1,2,5 and 6 were grown at 30 \u00b0C whereas samples 3 and 4 were grown at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM1405879", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25237058"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58285/GSE58285.soft.gz", "source": "GEO", "id": "GSM1405880", "field": "growth_protocol", "associatedPhrase": "All cultures grown up to 0.6 OD600 with shaking at 200 rpm . Samples 1,2,5 and 6 were grown at 30 \u00b0C whereas samples 3 and 4 were grown at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM1405880", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25237058"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58285/GSE58285.soft.gz", "source": "GEO", "id": "GSM1405882", "field": "growth_protocol", "associatedPhrase": "All cultures grown up to 0.6 OD600 with shaking at 200 rpm . Samples 1,2,5 and 6 were grown at 30 \u00b0C whereas samples 3 and 4 were grown at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM1405882", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25237058"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58556/GSE58556.soft.gz", "source": "GEO", "id": "GSM1413874", "field": "growth_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli K-12 ( strain BW38038 ) and BW39452 ( \u0394rpoS ) cultures were grown on <Med> MOPS glucose minimal medium </Med> with <Supp> 0.2 % glucose </Supp> as sole carbon source at <Temp> 37 \u00b0C </Temp> , pH was initially 7.4 , and the agitation speed was 500 rpm . Culture samples were harvested during logarithmic growth and following entry into stationary phase for the WT and rpoS mutant . OD600 measurements were made on a Beckman Coulter DU 800 spectrophotometer . Samples were harvested directly into ice-cold RNAlater at a 1:1 dilution to protect RNA from degradation and cells then were pelleted by centrifugation at 8000rpm for 10 minutes . Cell pellets were stored at -80 \u00b0C in an equal volume of RNAlater prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1413874", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25483350"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558078", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using TRIzol reagent ( Invitrogen ) and the sample was enriched in mRNA , depleting small RNAs with GeneJET \u2122 RNA Purification Kit ( Fermentas ) and ribosomal RNA with two cycle of MICROBExpress \u2122 Bacterial mRNA Enrichment Kit ( Ambion ) . To probe the RNA structure two \u00b5g of enriched mRNA were resuspended in 45 \u00b5l of DEPC water and denatured for 3 min at 95 \u00b0C , refolded at <Temp> 37 \u00b0C </Temp> , after addition of 10x RNA-structure buffer with pH 7.0 ( 100 mM Tris , 1 M KCl , 100 mM MgCl2 ) and digested for 1 min at <Temp> 37 \u00b0C </Temp> with either 0.05 U RNase V1 ( Life Technologies ) or a combination of 2 \u00b5g RNase A and 5 U RNase T1 ( Thermo Scientific ) . The reaction was stopped by extracting the RNA with phenol-chlorophorm . The RNase A/T1-digested sample was phosphorylated with T4 PNK ( NEB ) and purified with RNA Clean & Concentrator \u2122 kit ( Zymo Research ) . Both the V1 and A/T1 digested samples were randomly fragmented in buffer with pH 9.2 ( 100 mM Na2CO3 , 2 mM EDTA ) for 12 min at 95 \u00b0C . "}], "externalCrossReferences": [{"objectId": "GSM1558078", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558078", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558078", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558078", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558078", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558079", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using TRIzol reagent ( Invitrogen ) and the sample was enriched in mRNA , depleting small RNAs with GeneJET \u2122 RNA Purification Kit ( Fermentas ) and ribosomal RNA with two cycle of MICROBExpress \u2122 Bacterial mRNA Enrichment Kit ( Ambion ) . To probe the RNA structure two \u00b5g of enriched mRNA were resuspended in 45 \u00b5l of DEPC water and denatured for 3 min at 95 \u00b0C , refolded at <Temp> 37 \u00b0C </Temp> , after addition of 10x RNA-structure buffer with pH 7.0 ( 100 mM Tris , 1 M KCl , 100 mM MgCl2 ) and digested for 1 min at <Temp> 37 \u00b0C </Temp> with either 0.05 U RNase V1 ( Life Technologies ) or a combination of 2 \u00b5g RNase A and 5 U RNase T1 ( Thermo Scientific ) . The reaction was stopped by extracting the RNA with phenol-chlorophorm . The RNase A/T1-digested sample was phosphorylated with T4 PNK ( NEB ) and purified with RNA Clean & Concentrator \u2122 kit ( Zymo Research ) . Both the V1 and A/T1 digested samples were randomly fragmented in buffer with pH 9.2 ( 100 mM Na2CO3 , 2 mM EDTA ) for 12 min at 95 \u00b0C . "}], "externalCrossReferences": [{"objectId": "GSM1558079", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558079", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558079", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558079", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558079", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558080", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using TRIzol reagent ( Invitrogen ) and the sample was enriched in mRNA , depleting small RNAs with GeneJET \u2122 RNA Purification Kit ( Fermentas ) and ribosomal RNA with two cycle of MICROBExpress \u2122 Bacterial mRNA Enrichment Kit ( Ambion ) . To probe the RNA structure two \u00b5g of enriched mRNA were resuspended in 45 \u00b5l of DEPC water and denatured for 3 min at 95 \u00b0C , refolded at <Temp> 37 \u00b0C </Temp> , after addition of 10x RNA-structure buffer with pH 7.0 ( 100 mM Tris , 1 M KCl , 100 mM MgCl2 ) and digested for 1 min at <Temp> 37 \u00b0C </Temp> with either 0.05 U RNase V1 ( Life Technologies ) or a combination of 2 \u00b5g RNase A and 5 U RNase T1 ( Thermo Scientific ) . The reaction was stopped by extracting the RNA with phenol-chlorophorm . The RNase A/T1-digested sample was phosphorylated with T4 PNK ( NEB ) and purified with RNA Clean & Concentrator \u2122 kit ( Zymo Research ) . Both the V1 and A/T1 digested samples were randomly fragmented in buffer with pH 9.2 ( 100 mM Na2CO3 , 2 mM EDTA ) for 12 min at 95 \u00b0C . "}], "externalCrossReferences": [{"objectId": "GSM1558080", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558080", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558080", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558080", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558080", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558081", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using TRIzol reagent ( Invitrogen ) and the sample was enriched in mRNA , depleting small RNAs with GeneJET \u2122 RNA Purification Kit ( Fermentas ) and ribosomal RNA with two cycle of MICROBExpress \u2122 Bacterial mRNA Enrichment Kit ( Ambion ) . To probe the RNA structure two \u00b5g of enriched mRNA were resuspended in 45 \u00b5l of DEPC water and denatured for 3 min at 95 \u00b0C , refolded at <Temp> 37 \u00b0C </Temp> , after addition of 10x RNA-structure buffer with pH 7.0 ( 100 mM Tris , 1 M KCl , 100 mM MgCl2 ) and digested for 1 min at <Temp> 37 \u00b0C </Temp> with either 0.05 U RNase V1 ( Life Technologies ) or a combination of 2 \u00b5g RNase A and 5 U RNase T1 ( Thermo Scientific ) . The reaction was stopped by extracting the RNA with phenol-chlorophorm . The RNase A/T1-digested sample was phosphorylated with T4 PNK ( NEB ) and purified with RNA Clean & Concentrator \u2122 kit ( Zymo Research ) . Both the V1 and A/T1 digested samples were randomly fragmented in buffer with pH 9.2 ( 100 mM Na2CO3 , 2 mM EDTA ) for 12 min at 95 \u00b0C . "}], "externalCrossReferences": [{"objectId": "GSM1558081", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558081", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558081", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558081", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558081", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558082", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using TRIzol reagent ( Invitrogen ) and the sample was enriched in mRNA , depleting small RNAs with GeneJET \u2122 RNA Purification Kit ( Fermentas ) and ribosomal RNA with two cycle of MICROBExpress \u2122 Bacterial mRNA Enrichment Kit ( Ambion ) . To probe the RNA structure two \u00b5g of enriched mRNA were resuspended in 45 \u00b5l of DEPC water and denatured for 3 min at 95 \u00b0C , refolded at <Temp> 37 \u00b0C </Temp> , after addition of 10x RNA-structure buffer with pH 7.0 ( 100 mM Tris , 1 M KCl , 100 mM MgCl2 ) and digested for 1 min at <Temp> 37 \u00b0C </Temp> with either 0.05 U RNase V1 ( Life Technologies ) or a combination of 2 \u00b5g RNase A and 5 U RNase T1 ( Thermo Scientific ) . The reaction was stopped by extracting the RNA with phenol-chlorophorm . The RNase A/T1-digested sample was phosphorylated with T4 PNK ( NEB ) and purified with RNA Clean & Concentrator \u2122 kit ( Zymo Research ) . Both the V1 and A/T1 digested samples were randomly fragmented in buffer with pH 9.2 ( 100 mM Na2CO3 , 2 mM EDTA ) for 12 min at 95 \u00b0C . "}], "externalCrossReferences": [{"objectId": "GSM1558082", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558082", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558082", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558082", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558082", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558086", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using TRIzol reagent ( Invitrogen ) and the sample was enriched in mRNA , depleting small RNAs with GeneJET \u2122 RNA Purification Kit ( Fermentas ) and ribosomal RNA with two cycle of MICROBExpress \u2122 Bacterial mRNA Enrichment Kit ( Ambion ) . To probe the RNA structure two \u00b5g of enriched mRNA were resuspended in 45 \u00b5l of DEPC water and denatured for 3 min at 95 \u00b0C , refolded at <Temp> 37 \u00b0C </Temp> , after addition of 10x RNA-structure buffer with pH 7.0 ( 100 mM Tris , 1 M KCl , 100 mM MgCl2 ) and digested for 1 min at <Temp> 37 \u00b0C </Temp> with either 0.05 U RNase V1 ( Life Technologies ) or a combination of 2 \u00b5g RNase A and 5 U RNase T1 ( Thermo Scientific ) . The reaction was stopped by extracting the RNA with phenol-chlorophorm . The RNase A/T1-digested sample was phosphorylated with T4 PNK ( NEB ) and purified with RNA Clean & Concentrator \u2122 kit ( Zymo Research ) . Both the V1 and A/T1 digested samples were randomly fragmented in buffer with pH 9.2 ( 100 mM Na2CO3 , 2 mM EDTA ) for 12 min at 95 \u00b0C . "}], "externalCrossReferences": [{"objectId": "GSM1558086", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558086", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558086", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590712", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590712", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590717", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590717", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590718", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590718", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590719", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590719", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590720", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590720", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590721", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590721", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590722", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590722", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602347", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602348", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602349", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602350", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602351", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602352", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602353", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602354", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602355", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602355", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602356", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602356", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602357", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602357", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602358", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602358", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603386", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603387", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603388", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603388", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603389", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603389", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603391", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603391", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603392", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603392", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603393", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623160", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623160", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623161", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623162", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623162", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623163", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623163", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623164", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623165", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623166", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623167", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623167", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900470", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900472", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900474", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900474", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900475", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900475", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900476", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900476", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900477", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900477", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900478", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900478", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900479", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900479", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900480", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900480", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900482", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900482", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900483", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900483", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900485", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900485", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900486", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900486", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900488", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900488", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900490", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900490", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900491", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900491", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900492", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900492", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900493", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900493", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900494", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900494", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900495", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900495", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900496", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900496", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900497", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900497", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900498", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900498", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900499", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900499", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900500", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900500", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900501", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900501", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900502", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900502", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900507", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900507", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900509", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900509", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900510", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900510", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900513", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900513", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900514", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900514", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900515", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900515", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900516", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900516", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900518", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900518", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900520", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900520", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900521", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900521", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900522", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900522", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900524", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900524", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900525", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900525", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900526", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900526", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900527", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900527", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900529", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900529", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900530", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900530", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900531", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900531", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900532", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900532", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900534", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900534", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900536", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900536", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900537", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900537", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900538", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900538", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900539", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900539", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900540", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900540", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900541", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900541", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900542", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900542", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900543", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900543", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900544", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900544", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900545", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900545", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900546", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900546", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900547", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900547", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900548", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900548", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900549", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900549", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900550", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900550", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900551", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900551", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900552", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900552", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900553", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900553", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900554", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900554", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900555", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900555", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900556", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900556", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462936", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with full supplement ( Neidhardt et al. , 1974 ) minus methionine . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 1 liter flask at <Temp> 37 \u00b0C </Temp> with aeration until OD420 reached 0.4 . "}], "externalCrossReferences": [{"objectId": "GSM2462936", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462936", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of exponentially growing E. coli were incubated with 750 \u00b5L DMS for 2 min at <Temp> 37 \u00b0C </Temp> . For kasugamycin ( ksg ) experiments , ksg was added to a final concentration of 10 mg/mL to \u0394gcvB cells for 2 min at <Temp> 37 \u00b0C </Temp> prior to DMS modification . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) . For in vitro DMS modifications , mRNA was denatured at 95 \u00b0C for 2 min , cooled on ice and refolded in 90 \u00b5L RNA folding buffer ( 10 mM Tris pH 8.0 , 100 mM NaCl , 6 mM MgCl2 ) at <Temp> 37 \u00b0C </Temp> for 30 min then incubated in either .2 % DMS for 1 min ( 95 \u00b0C ) or 4 % DMS for 5 min ( <Temp> 37 \u00b0C </Temp> ) . "}], "externalCrossReferences": [{"objectId": "GSM2462936", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462937", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with full supplement ( Neidhardt et al. , 1974 ) minus methionine . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 1 liter flask at <Temp> 37 \u00b0C </Temp> with aeration until OD420 reached 0.4 . "}], "externalCrossReferences": [{"objectId": "GSM2462937", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462937", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of exponentially growing E. coli were incubated with 750 \u00b5L DMS for 2 min at <Temp> 37 \u00b0C </Temp> . For kasugamycin ( ksg ) experiments , ksg was added to a final concentration of 10 mg/mL to \u0394gcvB cells for 2 min at <Temp> 37 \u00b0C </Temp> prior to DMS modification . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) . For in vitro DMS modifications , mRNA was denatured at 95 \u00b0C for 2 min , cooled on ice and refolded in 90 \u00b5L RNA folding buffer ( 10 mM Tris pH 8.0 , 100 mM NaCl , 6 mM MgCl2 ) at <Temp> 37 \u00b0C </Temp> for 30 min then incubated in either .2 % DMS for 1 min ( 95 \u00b0C ) or 4 % DMS for 5 min ( <Temp> 37 \u00b0C </Temp> ) . "}], "externalCrossReferences": [{"objectId": "GSM2462937", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462938", "field": "growth_protocol", "associatedPhrase": "All cultures were based on MOPS media with <Supp> 0.2 % glucose </Supp> ( Teknova ) , with full supplement ( Neidhardt et al. , 1974 ) minus methionine . An overnight liquid culture was diluted 400-fold into 200 ml <Med> fresh media </Med> . The culture was kept in a 1 liter flask at <Temp> 37 \u00b0C </Temp> with aeration until OD420 reached 0.4 . "}], "externalCrossReferences": [{"objectId": "GSM2462938", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462938", "field": "treatment_protocol", "associatedPhrase": "For in vivo DMS modification , 15 mL of exponentially growing E. coli were incubated with 750 \u00b5L DMS for 2 min at <Temp> 37 \u00b0C </Temp> . For kasugamycin ( ksg ) experiments , ksg was added to a final concentration of 10 mg/mL to \u0394gcvB cells for 2 min at <Temp> 37 \u00b0C </Temp> prior to DMS modification . DMS was quenched by adding 30 mL 0 \u00b0C stop solution ( 30 % \u03b2-mercaptoethanol , 25 % isoamyl alcohol ) . For in vitro DMS modifications , mRNA was denatured at 95 \u00b0C for 2 min , cooled on ice and refolded in 90 \u00b5L RNA folding buffer ( 10 mM Tris pH 8.0 , 100 mM NaCl , 6 mM MgCl2 ) at <Temp> 37 \u00b0C </Temp> for 30 min then incubated in either .2 % DMS for 1 min ( 95 \u00b0C ) or 4 % DMS for 5 min ( <Temp> 37 \u00b0C </Temp> ) . "}], "externalCrossReferences": [{"objectId": "GSM2462938", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78041/GSE78041.soft.gz", "source": "GEO", "id": "GSM2065371", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of 1U / L RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . Next , the sample ( TEX + ) was depleted of processed RNAs using 1U per 1\u03bcg of RNA Terminator 5 ' - Phosphate-Dependent Exonuclease ( TEX , Epicentre ) in the presence of 1U/\u03bcL RNase Inhibitor for 60 min at 30 \u00b0 C . A control reaction without TEX ( TEX - ) was run in parallel . Following organic extraction , RNA was recovered by overnight precipitation and resuspended in RNase-free water . "}], "externalCrossReferences": [{"objectId": "GSM2065371", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27748404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78041/GSE78041.soft.gz", "source": "GEO", "id": "GSM2065372", "field": "extract_protocol", "associatedPhrase": "Total RNA was extracted using the Trizol reagent ( Thermo Fisher Scientific ) and the concentration and purity of the samples were determined using Nano Drop . RNA integrity was monitored using the R6K ScreenTape system on the Agilent 2200 TapeStation . gDNA was removed by Turbo DNase ( Thermo Fisher Scientific ) in the presence of 1U / L RiboLock RNase Inhibitor ( Thermo Fisher Scientific ) for 60 min at <Temp> 37 \u00b0C </Temp> . Following organic extraction ( 1x 25:24:1 v/v phenol/chloroform / isoamyalcohol , 1x chloroform ) , RNA was recovered by overnight precipitation with 3 volumes of 30:1 100 % ethanol/3 M sodium acetate ( pH 5.2 ) . Next , the sample ( TEX + ) was depleted of processed RNAs using 1U per 1\u03bcg of RNA Terminator 5 ' - Phosphate-Dependent Exonuclease ( TEX , Epicentre ) in the presence of 1U/\u03bcL RNase Inhibitor for 60 min at 30 \u00b0 C . A control reaction without TEX ( TEX - ) was run in parallel . Following organic extraction , RNA was recovered by overnight precipitation and resuspended in RNase-free water . "}], "externalCrossReferences": [{"objectId": "GSM2065372", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27748404"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075722", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075722", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075723", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075723", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122743", "field": "treatment_protocol", "associatedPhrase": "The cells were untreated , or treated with ( 100\u00b5g/mL Erythromycin or 50 \u00b5g/mL Clindamycin in 70 % Ethanol ) . After 10 minutes at <Temp> 37 \u00b0C </Temp> , 1 mL samples were subjected to hot phenol-chloroform extraction . Ref : <Gtype> Chuang </Gtype> SE , Daniels DL , and Blattner FR ( 1993 ) Global regulation of gene expression in Escherichia coli . J. Bacteriol . 175:2026-2036 . "}], "externalCrossReferences": [{"objectId": "GSM2122743", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122744", "field": "treatment_protocol", "associatedPhrase": "The cells were untreated , or treated with ( 100\u00b5g/mL Erythromycin or 50 \u00b5g/mL Clindamycin in 70 % Ethanol ) . After 10 minutes at <Temp> 37 \u00b0C </Temp> , 1 mL samples were subjected to hot phenol-chloroform extraction . Ref : <Gtype> Chuang </Gtype> SE , Daniels DL , and Blattner FR ( 1993 ) Global regulation of gene expression in Escherichia coli . J. Bacteriol . 175:2026-2036 . "}], "externalCrossReferences": [{"objectId": "GSM2122744", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122745", "field": "treatment_protocol", "associatedPhrase": "The cells were untreated , or treated with ( 100\u00b5g/mL Erythromycin or 50 \u00b5g/mL Clindamycin in 70 % Ethanol ) . After 10 minutes at <Temp> 37 \u00b0C </Temp> , 1 mL samples were subjected to hot phenol-chloroform extraction . Ref : <Gtype> Chuang </Gtype> SE , Daniels DL , and Blattner FR ( 1993 ) Global regulation of gene expression in Escherichia coli . J. Bacteriol . 175:2026-2036 . "}], "externalCrossReferences": [{"objectId": "GSM2122745", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122746", "field": "treatment_protocol", "associatedPhrase": "The cells were untreated , or treated with ( 100\u00b5g/mL Erythromycin or 50 \u00b5g/mL Clindamycin in 70 % Ethanol ) . After 10 minutes at <Temp> 37 \u00b0C </Temp> , 1 mL samples were subjected to hot phenol-chloroform extraction . Ref : <Gtype> Chuang </Gtype> SE , Daniels DL , and Blattner FR ( 1993 ) Global regulation of gene expression in Escherichia coli . J. Bacteriol . 175:2026-2036 . "}], "externalCrossReferences": [{"objectId": "GSM2122746", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122747", "field": "treatment_protocol", "associatedPhrase": "The cells were untreated , or treated with ( 100\u00b5g/mL Erythromycin or 50 \u00b5g/mL Clindamycin in 70 % Ethanol ) . After 10 minutes at <Temp> 37 \u00b0C </Temp> , 1 mL samples were subjected to hot phenol-chloroform extraction . Ref : <Gtype> Chuang </Gtype> SE , Daniels DL , and Blattner FR ( 1993 ) Global regulation of gene expression in Escherichia coli . J. Bacteriol . 175:2026-2036 . "}], "externalCrossReferences": [{"objectId": "GSM2122747", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122748", "field": "treatment_protocol", "associatedPhrase": "The cells were untreated , or treated with ( 100\u00b5g/mL Erythromycin or 50 \u00b5g/mL Clindamycin in 70 % Ethanol ) . After 10 minutes at <Temp> 37 \u00b0C </Temp> , 1 mL samples were subjected to hot phenol-chloroform extraction . Ref : <Gtype> Chuang </Gtype> SE , Daniels DL , and Blattner FR ( 1993 ) Global regulation of gene expression in Escherichia coli . J. Bacteriol . 175:2026-2036 . "}], "externalCrossReferences": [{"objectId": "GSM2122748", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122749", "field": "treatment_protocol", "associatedPhrase": "The cells were untreated , or treated with ( 100\u00b5g/mL Erythromycin or 50 \u00b5g/mL Clindamycin in 70 % Ethanol ) . After 10 minutes at <Temp> 37 \u00b0C </Temp> , 1 mL samples were subjected to hot phenol-chloroform extraction . Ref : <Gtype> Chuang </Gtype> SE , Daniels DL , and Blattner FR ( 1993 ) Global regulation of gene expression in Escherichia coli . J. Bacteriol . 175:2026-2036 . "}], "externalCrossReferences": [{"objectId": "GSM2122749", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122750", "field": "treatment_protocol", "associatedPhrase": "The cells were untreated , or treated with ( 100\u00b5g/mL Erythromycin or 50 \u00b5g/mL Clindamycin in 70 % Ethanol ) . After 10 minutes at <Temp> 37 \u00b0C </Temp> , 1 mL samples were subjected to hot phenol-chloroform extraction . Ref : <Gtype> Chuang </Gtype> SE , Daniels DL , and Blattner FR ( 1993 ) Global regulation of gene expression in Escherichia coli . J. Bacteriol . 175:2026-2036 . "}], "externalCrossReferences": [{"objectId": "GSM2122750", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122751", "field": "treatment_protocol", "associatedPhrase": "The cells were untreated , or treated with ( 100\u00b5g/mL Erythromycin or 50 \u00b5g/mL Clindamycin in 70 % Ethanol ) . After 10 minutes at <Temp> 37 \u00b0C </Temp> , 1 mL samples were subjected to hot phenol-chloroform extraction . Ref : <Gtype> Chuang </Gtype> SE , Daniels DL , and Blattner FR ( 1993 ) Global regulation of gene expression in Escherichia coli . J. Bacteriol . 175:2026-2036 . "}], "externalCrossReferences": [{"objectId": "GSM2122751", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127617", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic and anaerobic </Air> cultures were grown in 600 mL aliquots of DM25 and incubated at <Temp> 37 \u00b0C </Temp> with an orbital shaking of 150 RPM and inoculated with 1/100th volume of overnight culture . Aerobic cultures were grown for 9 h while anaerobic cultures were grown for 16 h. "}], "externalCrossReferences": [{"objectId": "GSM2127617", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127618", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic and anaerobic </Air> cultures were grown in 600 mL aliquots of DM25 and incubated at <Temp> 37 \u00b0C </Temp> with an orbital shaking of 150 RPM and inoculated with 1/100th volume of overnight culture . Aerobic cultures were grown for 9 h while anaerobic cultures were grown for 16 h. "}], "externalCrossReferences": [{"objectId": "GSM2127618", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127619", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic and anaerobic </Air> cultures were grown in 600 mL aliquots of DM25 and incubated at <Temp> 37 \u00b0C </Temp> with an orbital shaking of 150 RPM and inoculated with 1/100th volume of overnight culture . Aerobic cultures were grown for 9 h while anaerobic cultures were grown for 16 h. "}], "externalCrossReferences": [{"objectId": "GSM2127619", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157648", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157648", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157649", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157649", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157650", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157650", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157651", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157651", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157652", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157652", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157653", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157653", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157654", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157654", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157655", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157655", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157656", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157656", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157657", "field": "extract_protocol", "associatedPhrase": "Cell pellets were lysed and RNA collected using Qiagen 's RNeasy Plus Mini Kit with Qiagen Bacteria Protect RNA kit . RNA samples were then treated with DNase ( New England Biolabs ) for <Supp> 30 min </Supp> at <Temp> 37 \u00b0C </Temp> . "}], "externalCrossReferences": [{"objectId": "GSM2157657", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321583", "field": "extract_protocol", "associatedPhrase": "RNA was extracted from two biological replicates ( 30 mL ) of each bacterial culture isolated at each time point . The 30 mL culture was aliquoted into three 15 mL tubes containing 5 mL of ice-cold EtOH/Phenol stop solution ( 5 % water-saturated phenol pH 4.2 [ Invitrogen ] in 100 % ethanol ) . Cells were collected by centrifugation ( 4,000 rpm , 5 min , 4 \u00b0C ) and the pellet suspended in 800 \u00b5L TE pH 8.0 supplemented with 0.5 mg/mL lysozyme . SDS ( 80 \u00b5L at 10 % ( w/v ) ) was added , samples mixed by inversion , and incubated ( 65 \u00b0C , 2 min ) , before the addition of <Supp> 88 \u00b5L 1 M </Supp> NaOAc ( pH 5.2 ) . Each sample was added to an equal volume ( 1mL ) of water-saturated phenol ( pH 4.2 , 65 \u00b0C ) and incubated ( 65 \u00b0C , 6 min ) . The solution was separated into layers by centrifugation ( 14,000 rpm , 10 min , 4 \u00b0C ) and the upper aqueous RNA containing layer removed and transferred into a fresh tube . RNA was cleaned by three extractions with phenol : <Gtype> CHCl3 : IAA </Gtype> ( 25:24:1 , pH 8.0 ) before being precipitated ( -80 \u00b0C , O/N ) following the addition of 1/10 volume of 3M NaOAc ( pH 5.2 ) and 2 volumes of ice cold 100 % EtOH . RNA was pelleted ( 14,000 rpm , 25 min , 4 \u00b0C ) , the supernatant removed and the pellet washed with 1 mL 75 % cold EtOH ( made with DEPC-treated water ) . RNA was pelleted ( 14,000 rpm , 5 min , 4 \u00b0C ) and air dried before suspension in 80 \u00b5L RNAse free water ( Invitrogen ) and treatment with TURBO DNAse ( Ambion ) according to the manufacturer 's instructions . Briefly , 0.1 V of 10 X Turbo DNAse buffer ( Ambion ) was added to the RNA solution . 1 \u00b5L of TURBO DNAse was added to the solution , which was then incubated ( 30 min , <Temp> 37 \u00b0C </Temp> ) . Following incubation , 0.1 V of DNase Inactivation Reagent ( Ambion ) was added and then incubated ( 5 min , RT ) with occasional mixing . RNA was isolated and transferred into a fresh microfuge tube . RNA quality tested using the the Agilent RNA 6000 Nano Kit ( Agilent Technologies ) and quality analysed using the Agilent 2100 Bioanalyzer ( Agilent Technologies ) . "}], "externalCrossReferences": [{"objectId": "GSM2321583", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321583", "field": "growth_protocol", "associatedPhrase": "Synchronization was achieved by passaging cells through one or two rounds of stationary phase according to Cutler and Evans 1966 . Briefly : <Gtype> Individual </Gtype> colonies ( LB plate , <Temp> 37 \u00b0C </Temp> , 24 h ) were inoculated into M9 media and grown O/N ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) . M9 media was inoculated to a final OD600 = 0.25 ( early-logarithmic phase ) . Cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and maintained in stationary phase ( OD600 1.8 ) for <Supp> approximately 2 hours </Supp> . An appropriate amount of each culture was used to inoculate pre-warmed ( <Temp> 37 \u00b0C </Temp> ) M9 media to a final OD600 = 0.25 ( approximate 7-fold dilution ) . Released cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and harvested ( time = 0 , 1 hr , or 2 hr ) for GCC and RNA isolation . Samples ( 1 mL ) were also taken for FACS analysis and fluorescence microscopy ( t = 0 , 1 hr , and 2 hr ) . "}], "externalCrossReferences": [{"objectId": "GSM2321583", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321583", "field": "growth_protocol", "associatedPhrase": "Synchronization was achieved by passaging cells through one or two rounds of stationary phase according to Cutler and Evans 1966 . Briefly : <Gtype> Individual </Gtype> colonies ( LB plate , <Temp> 37 \u00b0C </Temp> , 24 h ) were inoculated into M9 media and grown O/N ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) . M9 media was inoculated to a final OD600 = 0.25 ( early-logarithmic phase ) . Cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and maintained in stationary phase ( OD600 1.8 ) for <Supp> approximately 2 hours </Supp> . An appropriate amount of each culture was used to inoculate pre-warmed ( <Temp> 37 \u00b0C </Temp> ) M9 media to a final OD600 = 0.25 ( approximate 7-fold dilution ) . Released cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and harvested ( time = 0 , 1 hr , or 2 hr ) for GCC and RNA isolation . Samples ( 1 mL ) were also taken for FACS analysis and fluorescence microscopy ( t = 0 , 1 hr , and 2 hr ) . "}], "externalCrossReferences": [{"objectId": "GSM2321583", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321584", "field": "extract_protocol", "associatedPhrase": "RNA was extracted from two biological replicates ( 30 mL ) of each bacterial culture isolated at each time point . The 30 mL culture was aliquoted into three 15 mL tubes containing 5 mL of ice-cold EtOH/Phenol stop solution ( 5 % water-saturated phenol pH 4.2 [ Invitrogen ] in 100 % ethanol ) . Cells were collected by centrifugation ( 4,000 rpm , 5 min , 4 \u00b0C ) and the pellet suspended in 800 \u00b5L TE pH 8.0 supplemented with 0.5 mg/mL lysozyme . SDS ( 80 \u00b5L at 10 % ( w/v ) ) was added , samples mixed by inversion , and incubated ( 65 \u00b0C , 2 min ) , before the addition of <Supp> 88 \u00b5L 1 M </Supp> NaOAc ( pH 5.2 ) . Each sample was added to an equal volume ( 1mL ) of water-saturated phenol ( pH 4.2 , 65 \u00b0C ) and incubated ( 65 \u00b0C , 6 min ) . The solution was separated into layers by centrifugation ( 14,000 rpm , 10 min , 4 \u00b0C ) and the upper aqueous RNA containing layer removed and transferred into a fresh tube . RNA was cleaned by three extractions with phenol : <Gtype> CHCl3 : IAA </Gtype> ( 25:24:1 , pH 8.0 ) before being precipitated ( -80 \u00b0C , O/N ) following the addition of 1/10 volume of 3M NaOAc ( pH 5.2 ) and 2 volumes of ice cold 100 % EtOH . RNA was pelleted ( 14,000 rpm , 25 min , 4 \u00b0C ) , the supernatant removed and the pellet washed with 1 mL 75 % cold EtOH ( made with DEPC-treated water ) . RNA was pelleted ( 14,000 rpm , 5 min , 4 \u00b0C ) and air dried before suspension in 80 \u00b5L RNAse free water ( Invitrogen ) and treatment with TURBO DNAse ( Ambion ) according to the manufacturer 's instructions . Briefly , 0.1 V of 10 X Turbo DNAse buffer ( Ambion ) was added to the RNA solution . 1 \u00b5L of TURBO DNAse was added to the solution , which was then incubated ( 30 min , <Temp> 37 \u00b0C </Temp> ) . Following incubation , 0.1 V of DNase Inactivation Reagent ( Ambion ) was added and then incubated ( 5 min , RT ) with occasional mixing . RNA was isolated and transferred into a fresh microfuge tube . RNA quality tested using the the Agilent RNA 6000 Nano Kit ( Agilent Technologies ) and quality analysed using the Agilent 2100 Bioanalyzer ( Agilent Technologies ) . "}], "externalCrossReferences": [{"objectId": "GSM2321584", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321584", "field": "growth_protocol", "associatedPhrase": "Synchronization was achieved by passaging cells through one or two rounds of stationary phase according to Cutler and Evans 1966 . Briefly : <Gtype> Individual </Gtype> colonies ( LB plate , <Temp> 37 \u00b0C </Temp> , 24 h ) were inoculated into M9 media and grown O/N ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) . M9 media was inoculated to a final OD600 = 0.25 ( early-logarithmic phase ) . Cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and maintained in stationary phase ( OD600 1.8 ) for <Supp> approximately 2 hours </Supp> . An appropriate amount of each culture was used to inoculate pre-warmed ( <Temp> 37 \u00b0C </Temp> ) M9 media to a final OD600 = 0.25 ( approximate 7-fold dilution ) . Released cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and harvested ( time = 0 , 1 hr , or 2 hr ) for GCC and RNA isolation . Samples ( 1 mL ) were also taken for FACS analysis and fluorescence microscopy ( t = 0 , 1 hr , and 2 hr ) . "}], "externalCrossReferences": [{"objectId": "GSM2321584", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321584", "field": "growth_protocol", "associatedPhrase": "Synchronization was achieved by passaging cells through one or two rounds of stationary phase according to Cutler and Evans 1966 . Briefly : <Gtype> Individual </Gtype> colonies ( LB plate , <Temp> 37 \u00b0C </Temp> , 24 h ) were inoculated into M9 media and grown O/N ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) . M9 media was inoculated to a final OD600 = 0.25 ( early-logarithmic phase ) . Cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and maintained in stationary phase ( OD600 1.8 ) for <Supp> approximately 2 hours </Supp> . An appropriate amount of each culture was used to inoculate pre-warmed ( <Temp> 37 \u00b0C </Temp> ) M9 media to a final OD600 = 0.25 ( approximate 7-fold dilution ) . Released cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and harvested ( time = 0 , 1 hr , or 2 hr ) for GCC and RNA isolation . Samples ( 1 mL ) were also taken for FACS analysis and fluorescence microscopy ( t = 0 , 1 hr , and 2 hr ) . "}], "externalCrossReferences": [{"objectId": "GSM2321584", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321585", "field": "extract_protocol", "associatedPhrase": "RNA was extracted from two biological replicates ( 30 mL ) of each bacterial culture isolated at each time point . The 30 mL culture was aliquoted into three 15 mL tubes containing 5 mL of ice-cold EtOH/Phenol stop solution ( 5 % water-saturated phenol pH 4.2 [ Invitrogen ] in 100 % ethanol ) . Cells were collected by centrifugation ( 4,000 rpm , 5 min , 4 \u00b0C ) and the pellet suspended in 800 \u00b5L TE pH 8.0 supplemented with 0.5 mg/mL lysozyme . SDS ( 80 \u00b5L at 10 % ( w/v ) ) was added , samples mixed by inversion , and incubated ( 65 \u00b0C , 2 min ) , before the addition of <Supp> 88 \u00b5L 1 M </Supp> NaOAc ( pH 5.2 ) . Each sample was added to an equal volume ( 1mL ) of water-saturated phenol ( pH 4.2 , 65 \u00b0C ) and incubated ( 65 \u00b0C , 6 min ) . The solution was separated into layers by centrifugation ( 14,000 rpm , 10 min , 4 \u00b0C ) and the upper aqueous RNA containing layer removed and transferred into a fresh tube . RNA was cleaned by three extractions with phenol : <Gtype> CHCl3 : IAA </Gtype> ( 25:24:1 , pH 8.0 ) before being precipitated ( -80 \u00b0C , O/N ) following the addition of 1/10 volume of 3M NaOAc ( pH 5.2 ) and 2 volumes of ice cold 100 % EtOH . RNA was pelleted ( 14,000 rpm , 25 min , 4 \u00b0C ) , the supernatant removed and the pellet washed with 1 mL 75 % cold EtOH ( made with DEPC-treated water ) . RNA was pelleted ( 14,000 rpm , 5 min , 4 \u00b0C ) and air dried before suspension in 80 \u00b5L RNAse free water ( Invitrogen ) and treatment with TURBO DNAse ( Ambion ) according to the manufacturer 's instructions . Briefly , 0.1 V of 10 X Turbo DNAse buffer ( Ambion ) was added to the RNA solution . 1 \u00b5L of TURBO DNAse was added to the solution , which was then incubated ( 30 min , <Temp> 37 \u00b0C </Temp> ) . Following incubation , 0.1 V of DNase Inactivation Reagent ( Ambion ) was added and then incubated ( 5 min , RT ) with occasional mixing . RNA was isolated and transferred into a fresh microfuge tube . RNA quality tested using the the Agilent RNA 6000 Nano Kit ( Agilent Technologies ) and quality analysed using the Agilent 2100 Bioanalyzer ( Agilent Technologies ) . "}], "externalCrossReferences": [{"objectId": "GSM2321585", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321585", "field": "growth_protocol", "associatedPhrase": "Synchronization was achieved by passaging cells through one or two rounds of stationary phase according to Cutler and Evans 1966 . Briefly : <Gtype> Individual </Gtype> colonies ( LB plate , <Temp> 37 \u00b0C </Temp> , 24 h ) were inoculated into M9 media and grown O/N ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) . M9 media was inoculated to a final OD600 = 0.25 ( early-logarithmic phase ) . Cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and maintained in stationary phase ( OD600 1.8 ) for <Supp> approximately 2 hours </Supp> . An appropriate amount of each culture was used to inoculate pre-warmed ( <Temp> 37 \u00b0C </Temp> ) M9 media to a final OD600 = 0.25 ( approximate 7-fold dilution ) . Released cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and harvested ( time = 0 , 1 hr , or 2 hr ) for GCC and RNA isolation . Samples ( 1 mL ) were also taken for FACS analysis and fluorescence microscopy ( t = 0 , 1 hr , and 2 hr ) . "}], "externalCrossReferences": [{"objectId": "GSM2321585", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321585", "field": "growth_protocol", "associatedPhrase": "Synchronization was achieved by passaging cells through one or two rounds of stationary phase according to Cutler and Evans 1966 . Briefly : <Gtype> Individual </Gtype> colonies ( LB plate , <Temp> 37 \u00b0C </Temp> , 24 h ) were inoculated into M9 media and grown O/N ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) . M9 media was inoculated to a final OD600 = 0.25 ( early-logarithmic phase ) . Cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and maintained in stationary phase ( OD600 1.8 ) for <Supp> approximately 2 hours </Supp> . An appropriate amount of each culture was used to inoculate pre-warmed ( <Temp> 37 \u00b0C </Temp> ) M9 media to a final OD600 = 0.25 ( approximate 7-fold dilution ) . Released cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and harvested ( time = 0 , 1 hr , or 2 hr ) for GCC and RNA isolation . Samples ( 1 mL ) were also taken for FACS analysis and fluorescence microscopy ( t = 0 , 1 hr , and 2 hr ) . "}], "externalCrossReferences": [{"objectId": "GSM2321585", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321586", "field": "extract_protocol", "associatedPhrase": "RNA was extracted from two biological replicates ( 30 mL ) of each bacterial culture isolated at each time point . The 30 mL culture was aliquoted into three 15 mL tubes containing 5 mL of ice-cold EtOH/Phenol stop solution ( 5 % water-saturated phenol pH 4.2 [ Invitrogen ] in 100 % ethanol ) . Cells were collected by centrifugation ( 4,000 rpm , 5 min , 4 \u00b0C ) and the pellet suspended in 800 \u00b5L TE pH 8.0 supplemented with 0.5 mg/mL lysozyme . SDS ( 80 \u00b5L at 10 % ( w/v ) ) was added , samples mixed by inversion , and incubated ( 65 \u00b0C , 2 min ) , before the addition of <Supp> 88 \u00b5L 1 M </Supp> NaOAc ( pH 5.2 ) . Each sample was added to an equal volume ( 1mL ) of water-saturated phenol ( pH 4.2 , 65 \u00b0C ) and incubated ( 65 \u00b0C , 6 min ) . The solution was separated into layers by centrifugation ( 14,000 rpm , 10 min , 4 \u00b0C ) and the upper aqueous RNA containing layer removed and transferred into a fresh tube . RNA was cleaned by three extractions with phenol : <Gtype> CHCl3 : IAA </Gtype> ( 25:24:1 , pH 8.0 ) before being precipitated ( -80 \u00b0C , O/N ) following the addition of 1/10 volume of 3M NaOAc ( pH 5.2 ) and 2 volumes of ice cold 100 % EtOH . RNA was pelleted ( 14,000 rpm , 25 min , 4 \u00b0C ) , the supernatant removed and the pellet washed with 1 mL 75 % cold EtOH ( made with DEPC-treated water ) . RNA was pelleted ( 14,000 rpm , 5 min , 4 \u00b0C ) and air dried before suspension in 80 \u00b5L RNAse free water ( Invitrogen ) and treatment with TURBO DNAse ( Ambion ) according to the manufacturer 's instructions . Briefly , 0.1 V of 10 X Turbo DNAse buffer ( Ambion ) was added to the RNA solution . 1 \u00b5L of TURBO DNAse was added to the solution , which was then incubated ( 30 min , <Temp> 37 \u00b0C </Temp> ) . Following incubation , 0.1 V of DNase Inactivation Reagent ( Ambion ) was added and then incubated ( 5 min , RT ) with occasional mixing . RNA was isolated and transferred into a fresh microfuge tube . RNA quality tested using the the Agilent RNA 6000 Nano Kit ( Agilent Technologies ) and quality analysed using the Agilent 2100 Bioanalyzer ( Agilent Technologies ) . "}], "externalCrossReferences": [{"objectId": "GSM2321586", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321586", "field": "growth_protocol", "associatedPhrase": "Synchronization was achieved by passaging cells through one or two rounds of stationary phase according to Cutler and Evans 1966 . Briefly : <Gtype> Individual </Gtype> colonies ( LB plate , <Temp> 37 \u00b0C </Temp> , 24 h ) were inoculated into M9 media and grown O/N ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) . M9 media was inoculated to a final OD600 = 0.25 ( early-logarithmic phase ) . Cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and maintained in stationary phase ( OD600 1.8 ) for <Supp> approximately 2 hours </Supp> . An appropriate amount of each culture was used to inoculate pre-warmed ( <Temp> 37 \u00b0C </Temp> ) M9 media to a final OD600 = 0.25 ( approximate 7-fold dilution ) . Released cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and harvested ( time = 0 , 1 hr , or 2 hr ) for GCC and RNA isolation . Samples ( 1 mL ) were also taken for FACS analysis and fluorescence microscopy ( t = 0 , 1 hr , and 2 hr ) . "}], "externalCrossReferences": [{"objectId": "GSM2321586", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87071/GSE87071.soft.gz", "source": "GEO", "id": "GSM2321586", "field": "growth_protocol", "associatedPhrase": "Synchronization was achieved by passaging cells through one or two rounds of stationary phase according to Cutler and Evans 1966 . Briefly : <Gtype> Individual </Gtype> colonies ( LB plate , <Temp> 37 \u00b0C </Temp> , 24 h ) were inoculated into M9 media and grown O/N ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) . M9 media was inoculated to a final OD600 = 0.25 ( early-logarithmic phase ) . Cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and maintained in stationary phase ( OD600 1.8 ) for <Supp> approximately 2 hours </Supp> . An appropriate amount of each culture was used to inoculate pre-warmed ( <Temp> 37 \u00b0C </Temp> ) M9 media to a final OD600 = 0.25 ( approximate 7-fold dilution ) . Released cultures were grown ( <Temp> 37 \u00b0C </Temp> , 200 rpm ) and harvested ( time = 0 , 1 hr , or 2 hr ) for GCC and RNA isolation . Samples ( 1 mL ) were also taken for FACS analysis and fluorescence microscopy ( t = 0 , 1 hr , and 2 hr ) . "}], "externalCrossReferences": [{"objectId": "GSM2321586", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344783", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344783", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344784", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344784", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344785", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344785", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344786", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344786", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344787", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344787", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344788", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344788", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344789", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344789", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344790", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344790", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344791", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344791", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344792", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344792", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344793", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344793", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344794", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344794", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344795", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344795", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344809", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344809", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88725/GSE88725.soft.gz", "source": "GEO", "id": "GSM2344810", "field": "growth_protocol", "associatedPhrase": "All strains were grown shaking at <Temp> 37 \u00b0C </Temp> in 200mL cultures of <Med> MOPS complete-glucose liquid media </Med> ( unless otherwise annotated ) in 1L flasks and cells were harvested at OD ( 420nm ) between 0.4 - 0.6 "}], "externalCrossReferences": [{"objectId": "GSM2344810", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28301469"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349915", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349915", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349916", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349916", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349917", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349917", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349918", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349918", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349919", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349919", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349920", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349920", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349921", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349921", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349922", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349922", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349923", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349923", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349924", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349924", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349925", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349925", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349926", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349926", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349927", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349927", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349928", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349928", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349929", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349929", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349930", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349930", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356687", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356687", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356687", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356687", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356688", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356688", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356688", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356688", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356689", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356689", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356690", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356690", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411669", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411669", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411670", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411670", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411671", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411671", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411672", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411672", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411673", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411673", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411674", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411674", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411675", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411675", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411676", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411676", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411677", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411677", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411678", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411678", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411679", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411679", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411680", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411680", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411681", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411681", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411682", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411682", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411683", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411683", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411684", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411684", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411685", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411685", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411686", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411686", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411687", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411687", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411688", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411688", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411689", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411689", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411690", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411690", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411691", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411691", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411692", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411692", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411693", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411693", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411694", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411694", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411695", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411695", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411696", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411696", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411697", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411697", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411698", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411698", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411699", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411699", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411700", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411700", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411701", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411701", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411702", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411702", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411703", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411703", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411704", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411704", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411705", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411705", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411706", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411706", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411707", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411707", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411708", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411708", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411709", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411709", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411710", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411710", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411711", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411711", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411712", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411712", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411713", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411713", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411714", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411714", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411715", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411715", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411716", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411716", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411717", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411717", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411718", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411718", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411719", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411719", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411720", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411720", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411721", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411721", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411722", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411722", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411723", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411723", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411724", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411724", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411725", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411725", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411726", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411726", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90743/GSE90743.soft.gz", "source": "GEO", "id": "GSM2411727", "field": "growth_protocol", "associatedPhrase": "E. coli K12 substrain W3110 was used in this study . Bioreactor cultivations were performed using a two-compartment bioreactor system consisting of an STR ( 3L ) with a recycle loop ( PFR ) in defined medium at pH7 and <Temp> 37 \u00b0C </Temp> . Bioreactor cultivations were carried out with a minimal medium containing ( per liter ) 19.0 g glucose , 1.0 g NaH2PO4 . \u00b7 2 H2O , 2.6 g K2HPO4 , 3.8 g ( NH4 ) 2SO4 , and a trace element solution ( 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 \u00b7 6 H2O , 0.00009 g ZnSO4 \u00b7 7 H2O , 0.00005 g MnSO4 \u00b7 H2O , 0.0008 g CuSO4 \u00b7 5 H2O , 0.00009 g CoCl2 \u00b7 6 H2O , 0.0044 g CaCl2 \u00b7 2 H2O , 0.1 g MgSO4 \u00b7 7 H2O ) . The STR-PFR was operated as a chemostat with ammonia as the growth-limiting substrate . First , a reference steady state ( \u00b5 = 0.2 h \u2212 1 ) was established in the STR and sampled three times during a 16 h period following establishment of the steady state . Then , the PFR was added and samples for RNA-sequencing were aquired . "}], "externalCrossReferences": [{"objectId": "GSM2411727", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2844739128702020"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445135", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445135", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445138", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445138", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445140", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445140", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445142", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445142", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445144", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445144", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445145", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445145", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445147", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445147", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445149", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445149", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445151", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445151", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445153", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445153", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445155", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445155", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445157", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445157", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445159", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445159", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445161", "field": "growth_protocol", "associatedPhrase": "E. coli TolC cells were grown o/n in LB medium at <Temp> 37 \u00b0C </Temp> and 200 rpm . "}], "externalCrossReferences": [{"objectId": "GSM2445161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE94984/GSE94984.soft.gz", "source": "GEO", "id": "GSM2493797", "field": "growth_protocol", "associatedPhrase": "LB medium , 180 rpm shaking , at <Temp> 37 \u00b0C </Temp> , between exponential and <Phase> stationary phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM2493797", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28245801"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516609", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516609", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516610", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516610", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516611", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516611", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516612", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516612", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516613", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516613", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516614", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516614", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516615", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516615", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516616", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516616", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516617", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516617", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516618", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516618", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516619", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516619", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516620", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516620", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516621", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516621", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516622", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516622", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516623", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516623", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516624", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516624", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516625", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516625", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516626", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516626", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516627", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516627", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516628", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516628", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516629", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516629", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516630", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516630", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516631", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516631", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516632", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516632", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516633", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516633", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516634", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516634", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516635", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516635", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516636", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516636", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516637", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516637", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516638", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516638", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757255", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757255", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757256", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757256", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757257", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757257", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757258", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757258", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757259", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757259", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757260", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757260", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757261", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757261", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757262", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757262", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757263", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757263", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757264", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757264", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757265", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757265", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757266", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757266", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757267", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757267", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757268", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757268", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757269", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757269", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757270", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757270", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757272", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757272", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000003199", "name": "37 \u00b0C", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "37 \u00b0C", "term_id": "MCO000003199", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757273", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757273", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786596", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786596", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786597", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786597", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786598", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786598", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786599", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786599", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786600", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786600", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786601", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786601", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786602", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786602", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786603", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786603", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786604", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786604", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786605", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786605", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786606", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786606", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786607", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786607", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786608", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786608", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786609", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786609", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002105", "name": "IPTG was", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG was", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786610", "field": "treatment_protocol", "associatedPhrase": "Starting from single colonies , the following cultures were set up in triplicate for overnight incubation : GJ13507 , GJ13531 , and GJ13533 in glucose-minimal A ; and GJ13519 also in 0.2 % glycerol-minimal A. All the cultures were supplemented with 200 \u03bcM IPTG , with the exception of the cultures of GJ13507 whose supplementation with <Supp> IPTG was </Supp> at 3 \u03bcM . The overnight-grown cultures were each subcultured into 20 ml <Med> of fresh medium </Med> of the same composition , with an inoculum of 1:50 for GJ13507 and GJ13531 and of 1:100 for the remainder , and grown to an A600 of 0.4 to 0.45 , before the cells were harvested for making the RNA preparations "}], "externalCrossReferences": [{"objectId": "GSM2786610", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE104504/GSE104504.soft.gz", "source": "GEO", "id": "GSM2802560", "field": "characteristics", "associatedPhrase": "growth phase : <Anti> Mid </Anti> <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM2802560", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29205228"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE104504/GSE104504.soft.gz", "source": "GEO", "id": "GSM2802561", "field": "characteristics", "associatedPhrase": "growth phase : <Anti> Mid </Anti> <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM2802561", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29205228"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE104504/GSE104504.soft.gz", "source": "GEO", "id": "GSM2802565", "field": "characteristics", "associatedPhrase": "growth phase : <Anti> Mid </Anti> <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM2802565", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29205228"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE104504/GSE104504.soft.gz", "source": "GEO", "id": "GSM2802566", "field": "characteristics", "associatedPhrase": "growth phase : <Anti> Mid </Anti> <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM2802566", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29205228"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE104504/GSE104504.soft.gz", "source": "GEO", "id": "GSM2802567", "field": "characteristics", "associatedPhrase": "growth phase : <Anti> Mid </Anti> <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM2802567", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29205228"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331409", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331409", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331410", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331410", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331411", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331411", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331412", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331412", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331413", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331413", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331414", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331414", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331426", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331426", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331427", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331427", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331428", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331428", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331429", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331429", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002864", "name": "exponential", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "exponential", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331430", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> exponential </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331430", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002695", "name": "30 \u00b0C", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30 \u00b0C", "term_id": "MCO000002695", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107301/GSE107301.soft.gz", "source": "GEO", "id": "GSM2870440", "field": "characteristics", "associatedPhrase": "growth condition : <Supp> MM + 0.12 % casaminoacids +0.4 % glucose </Supp> at <Temp> 30 \u00b0C </Temp> "}], "externalCrossReferences": [{"objectId": "GSM2870440", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29358050"}]}{"id": "MCO000002695", "name": "30 \u00b0C", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30 \u00b0C", "term_id": "MCO000002695", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE107301/GSE107301.soft.gz", "source": "GEO", "id": "GSM2870441", "field": "characteristics", "associatedPhrase": "growth condition : <Supp> MM + 0.12 % casaminoacids +0.4 % glucose </Supp> at <Temp> 30 \u00b0C </Temp> "}], "externalCrossReferences": [{"objectId": "GSM2870441", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29358050"}]}{"id": "MCO000002695", "name": "30 \u00b0C", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30 \u00b0C", "term_id": "MCO000002695", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE34449/GSE34449.soft.gz", "source": "GEO", "id": "GSM849370", "field": "growth_protocol", "associatedPhrase": "E. coli [ K-12 MG1655 strain ( <Gversion> U00096 .2 </Gversion> ) ] was grown overnight at <Temp> 30 \u00b0C </Temp> in LB medium . The resulting culture was diluted 500-fold in fresh LB medium and grown at 30 \u00b0C for 3.5 hours such that O.D. at 600 nm became 0.30-0.35 . "}], "externalCrossReferences": [{"objectId": "GSM849370", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22232676"}]}{"id": "MCO000002695", "name": "30 \u00b0C", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30 \u00b0C", "term_id": "MCO000002695", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE34449/GSE34449.soft.gz", "source": "GEO", "id": "GSM849370", "field": "growth_protocol", "associatedPhrase": "E. coli [ K-12 MG1655 strain ( <Gversion> U00096 .2 </Gversion> ) ] was grown overnight at <Temp> 30 \u00b0C </Temp> in LB medium . The resulting culture was diluted 500-fold in fresh LB medium and grown at 30 \u00b0C for 3.5 hours such that O.D. at 600 nm became 0.30-0.35 . "}], "externalCrossReferences": [{"objectId": "GSM849370", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22232676"}]}{"id": "MCO000002695", "name": "30 \u00b0C", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30 \u00b0C", "term_id": "MCO000002695", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE34449/GSE34449.soft.gz", "source": "GEO", "id": "GSM849371", "field": "growth_protocol", "associatedPhrase": "E. coli [ K-12 MG1655 strain ( <Gversion> U00096 .2 </Gversion> ) ] was grown overnight at <Temp> 30 \u00b0C </Temp> in LB medium . The resulting culture was diluted 500-fold in fresh LB medium and grown at 30 \u00b0C for 3.5 hours such that O.D. at 600 nm became 0.30-0.35 . "}], "externalCrossReferences": [{"objectId": "GSM849371", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22232676"}]}{"id": "MCO000002695", "name": "30 \u00b0C", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30 \u00b0C", "term_id": "MCO000002695", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE34449/GSE34449.soft.gz", "source": "GEO", "id": "GSM849371", "field": "growth_protocol", "associatedPhrase": "E. coli [ K-12 MG1655 strain ( <Gversion> U00096 .2 </Gversion> ) ] was grown overnight at <Temp> 30 \u00b0C </Temp> in LB medium . The resulting culture was diluted 500-fold in fresh LB medium and grown at 30 \u00b0C for 3.5 hours such that O.D. at 600 nm became 0.30-0.35 . "}], "externalCrossReferences": [{"objectId": "GSM849371", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22232676"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914313", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914313", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914315", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914315", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914317", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914317", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914318", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914318", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914319", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914319", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914320", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914320", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914321", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914321", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914322", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914322", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914323", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914323", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914324", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914324", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914325", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914325", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914326", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914326", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914327", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914327", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE108846/GSE108846.soft.gz", "source": "GEO", "id": "GSM2914328", "field": "growth_protocol", "associatedPhrase": "Experiments were performed at <Temp> 37 \u00b0C </Temp> and followed three steps : seed culture , pre-culture and experimental culture . In the seed culture the cells were grown overnight in Luria Broth , then diluted 1:100 in either <Med> M9 minimal media </Med> with glycerol or glucose for the pre-cultures . Finally , the experimental cultures were started from the overnight grown pre-cultures containing the same carbon source at a normalized optical density at 600 nm ( OD600 ) of 0.05 . Cultures were harvested at mid-exponential phase , cells were immediately spun down and cell pellets stored at -80 \u00b0C until processed . "}], "externalCrossReferences": [{"objectId": "GSM2914328", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29378945"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461156", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461156", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461156", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 0.2 % glucose w/o trace elements "}], "externalCrossReferences": [{"objectId": "GSM3461156", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461157", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461157", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461157", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 0.2 % glucose w/o trace elements "}], "externalCrossReferences": [{"objectId": "GSM3461157", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461164", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461164", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 0.2 % glucose </Supp> and 10mM glutamate "}], "externalCrossReferences": [{"objectId": "GSM3461164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461165", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461165", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 0.2 % glucose </Supp> and 10mM glutamate "}], "externalCrossReferences": [{"objectId": "GSM3461165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461166", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461166", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 0.2 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3461166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463565", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463565", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463566", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463566", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463567", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463567", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463568", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463568", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463569", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L D-sorbitol "}], "externalCrossReferences": [{"objectId": "GSM3463569", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463570", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L D-sorbitol "}], "externalCrossReferences": [{"objectId": "GSM3463570", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463571", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L D-ribose "}], "externalCrossReferences": [{"objectId": "GSM3463571", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463572", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L D-ribose "}], "externalCrossReferences": [{"objectId": "GSM3463572", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463573", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463573", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463574", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463574", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463575", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L glucarate "}], "externalCrossReferences": [{"objectId": "GSM3463575", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463576", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L glucarate "}], "externalCrossReferences": [{"objectId": "GSM3463576", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463577", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463577", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463578", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463578", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463579", "field": "characteristics", "associatedPhrase": "media : <Air> anaerobic </Air> <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463579", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463580", "field": "characteristics", "associatedPhrase": "media : <Air> anaerobic </Air> <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463580", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463581", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L N-acetylglucosamine "}], "externalCrossReferences": [{"objectId": "GSM3463581", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463582", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L N-acetylglucosamine "}], "externalCrossReferences": [{"objectId": "GSM3463582", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463583", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L galactose "}], "externalCrossReferences": [{"objectId": "GSM3463583", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463584", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L galactose "}], "externalCrossReferences": [{"objectId": "GSM3463584", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463585", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L D-gluconate "}], "externalCrossReferences": [{"objectId": "GSM3463585", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463586", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / 4g/L D-gluconate "}], "externalCrossReferences": [{"objectId": "GSM3463586", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854833", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3854833", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854834", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3854834", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854835", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose and 1 mM cytidine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3854835", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854836", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose and 1 mM cytidine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3854836", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854837", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> and 100 mg/L adenine "}], "externalCrossReferences": [{"objectId": "GSM3854837", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854838", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> and 100 mg/L adenine "}], "externalCrossReferences": [{"objectId": "GSM3854838", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122296/GSE122296.soft.gz", "source": "GEO", "id": "GSM3463601", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463601", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122296/GSE122296.soft.gz", "source": "GEO", "id": "GSM3463602", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463602", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507068", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394fis and \u0394hns were grown in Luria-Bertani ( LB ) broth and agar ( 15g/l ) . Where needed , kanamycin was used at final concentration of 50\u00b5g/ml . For RNA extraction , E. coli cultures were grown to mid-exponential growth phase <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with 40 % ( w/v ) glucose . "}], "externalCrossReferences": [{"objectId": "GSM3507068", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507069", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394fis and \u0394hns were grown in Luria-Bertani ( LB ) broth and agar ( 15g/l ) . Where needed , kanamycin was used at final concentration of 50\u00b5g/ml . For RNA extraction , E. coli cultures were grown to mid-exponential growth phase <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with 40 % ( w/v ) glucose . "}], "externalCrossReferences": [{"objectId": "GSM3507069", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507070", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394fis and \u0394hns were grown in Luria-Bertani ( LB ) broth and agar ( 15g/l ) . Where needed , kanamycin was used at final concentration of 50\u00b5g/ml . For RNA extraction , E. coli cultures were grown to mid-exponential growth phase <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with 40 % ( w/v ) glucose . "}], "externalCrossReferences": [{"objectId": "GSM3507070", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507071", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394fis and \u0394hns were grown in Luria-Bertani ( LB ) broth and agar ( 15g/l ) . Where needed , kanamycin was used at final concentration of 50\u00b5g/ml . For RNA extraction , E. coli cultures were grown to mid-exponential growth phase <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with 40 % ( w/v ) glucose . "}], "externalCrossReferences": [{"objectId": "GSM3507071", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013462", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013462", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013463", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013463", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013464", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013464", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013465", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013465", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013466", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013466", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013467", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013467", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013468", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013468", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013470", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013471", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013471", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013472", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013473", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013473", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013474", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013474", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013475", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013475", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013476", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013476", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013477", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013477", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013478", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013478", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013479", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013479", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013480", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013480", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013481", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013481", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013482", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013482", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013483", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013483", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013484", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013484", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013485", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013485", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174823", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174823", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174824", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174824", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174825", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174825", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174826", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174826", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174827", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174827", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174828", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174828", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174829", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174829", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174830", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174830", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174831", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174831", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174832", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174832", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174833", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174833", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174834", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174834", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174835", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174835", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174836", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174836", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326347", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326348", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326349", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326350", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326351", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326352", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326353", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326354", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394fur were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . For iron treated cells , 0.1 mM of FeCl2 were treated from the beginning of culture , and for DPD treated cells , <Supp> 0.2 mM of DPD </Supp> were added at early-log phase and continued to culture for additional <Supp> 2h </Supp> . "}], "externalCrossReferences": [{"objectId": "GSM1326354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602347", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602348", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602349", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602350", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602351", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602352", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602353", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602354", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602355", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602355", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602356", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602356", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602357", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602357", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602358", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , and \u0394cra were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> , fructose and acetate . "}], "externalCrossReferences": [{"objectId": "GSM1602358", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603386", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603387", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603388", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603388", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603389", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603389", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603391", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603391", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603392", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603392", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603393", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , \u0394oxyR , \u0394soxR , and \u0394soxS were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with 250 uM of paraquat at mid-log pahse for 20 min with agitation . "}], "externalCrossReferences": [{"objectId": "GSM1603393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623160", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623160", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623161", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623162", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623162", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623163", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623163", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623164", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623165", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623166", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623167", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623167", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075722", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075722", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075723", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075723", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356687", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356687", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356688", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356688", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356689", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356689", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002526", "name": "M9 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "M9 minimal media", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356690", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356690", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022135", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022135", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022136", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022136", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022137", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022137", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022138", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022138", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022139", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022139", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022140", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022140", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022141", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022141", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022142", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022142", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022143", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022143", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022144", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3022144", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108934", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108934", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108935", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108935", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108936", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108936", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108937", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108937", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108938", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108938", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108939", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108939", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108940", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108940", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108941", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108941", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108942", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108942", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108943", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108943", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108944", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108944", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108945", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108945", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108946", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108946", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108947", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108947", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108948", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108948", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108949", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108949", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108950", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108950", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108951", "field": "characteristics", "associatedPhrase": "phase : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM3108951", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122296/GSE122296.soft.gz", "source": "GEO", "id": "GSM3463601", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into M9 minimal media with <Supp> 2g/L glucose </Supp> , supplemented with 1 ml trace element solution ( 100X ) . The culture was incubated at 37C overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37C with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . "}], "externalCrossReferences": [{"objectId": "GSM3463601", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122296/GSE122296.soft.gz", "source": "GEO", "id": "GSM3463602", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into M9 minimal media with <Supp> 2g/L glucose </Supp> , supplemented with 1 ml trace element solution ( 100X ) . The culture was incubated at 37C overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37C with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . "}], "externalCrossReferences": [{"objectId": "GSM3463602", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832606", "field": "characteristics", "associatedPhrase": "growth stage : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM832606", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832607", "field": "characteristics", "associatedPhrase": "growth stage : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM832607", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832608", "field": "characteristics", "associatedPhrase": "growth stage : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM832608", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832609", "field": "characteristics", "associatedPhrase": "growth stage : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM832609", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832610", "field": "characteristics", "associatedPhrase": "growth stage : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM832610", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832611", "field": "characteristics", "associatedPhrase": "growth stage : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM832611", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832612", "field": "characteristics", "associatedPhrase": "growth stage : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM832612", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE33671/GSE33671.soft.gz", "source": "GEO", "id": "GSM832613", "field": "characteristics", "associatedPhrase": "growth stage : <Phase> mid-log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM832613", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "22153074"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558078", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558078", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558078", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558078", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558079", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558079", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558079", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558079", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558080", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558080", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558080", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558080", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558081", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558081", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558081", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558081", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558082", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558082", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558082", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558082", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE63817/GSE63817.soft.gz", "source": "GEO", "id": "GSM1558086", "field": "growth_protocol", "associatedPhrase": "E. coli MC4100 strain was cultured at <Temp> 37 \u00b0C </Temp> to <Phase> mid-log phase </Phase> ( OD600 ~ 0.4 ) in <Med> LB media </Med> "}], "externalCrossReferences": [{"objectId": "GSM1558086", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26495981"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623160", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623160", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623161", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623162", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623162", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623163", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623163", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623164", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623165", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623166", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002872", "name": "mid-log phase", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mid-log phase", "term_id": "MCO000002872", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623167", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623167", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002505", "name": "E.coli K12 BW25113", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "E.coli K12 BW25113", "term_id": "MCO000002505", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114262/GSE114262.soft.gz", "source": "GEO", "id": "GSM3138597", "field": "data_processing", "associatedPhrase": "Genome _ build : <Gtype> E.coli K12 BW25113 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3138597", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30948634"}]}{"id": "MCO000002505", "name": "E.coli K12 BW25113", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "E.coli K12 BW25113", "term_id": "MCO000002505", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114262/GSE114262.soft.gz", "source": "GEO", "id": "GSM3138598", "field": "data_processing", "associatedPhrase": "Genome _ build : <Gtype> E.coli K12 BW25113 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3138598", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30948634"}]}{"id": "MCO000002505", "name": "E.coli K12 BW25113", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "E.coli K12 BW25113", "term_id": "MCO000002505", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114262/GSE114262.soft.gz", "source": "GEO", "id": "GSM3138599", "field": "data_processing", "associatedPhrase": "Genome _ build : <Gtype> E.coli K12 BW25113 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3138599", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30948634"}]}{"id": "MCO000003163", "name": "SB medium", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "SB medium", "term_id": "MCO000003163", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114262/GSE114262.soft.gz", "source": "GEO", "id": "GSM3138597", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of the dnaB-Ts single mutant ( strain 2429 ) and the dnaB-Ts \u0394ahpC double mutant ( strain 3780 ) were diluted 100-fold into fresh <Med> SB medium </Med> ( 3.2 % peptone , 2 % yeast extract and 1 % NaCl ) , and they were then grown at 30 \u00b0C to early-log phase ( OD600 = 0.15 ) . Next these log-phase cultures were diluted 20-fold into 200 ml pre-warmed , fresh SB medium , and they were grown at 30 \u00b0C for another 60 min . "}], "externalCrossReferences": [{"objectId": "GSM3138597", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30948634"}]}{"id": "MCO000003163", "name": "SB medium", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "SB medium", "term_id": "MCO000003163", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114262/GSE114262.soft.gz", "source": "GEO", "id": "GSM3138597", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of the dnaB-Ts single mutant ( strain 2429 ) and the dnaB-Ts \u0394ahpC double mutant ( strain 3780 ) were diluted 100-fold into fresh <Med> SB medium </Med> ( 3.2 % peptone , 2 % yeast extract and 1 % NaCl ) , and they were then grown at 30 \u00b0C to early-log phase ( OD600 = 0.15 ) . Next these log-phase cultures were diluted 20-fold into 200 ml pre-warmed , fresh SB medium , and they were grown at 30 \u00b0C for another 60 min . "}], "externalCrossReferences": [{"objectId": "GSM3138597", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30948634"}]}{"id": "MCO000003163", "name": "SB medium", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "SB medium", "term_id": "MCO000003163", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114262/GSE114262.soft.gz", "source": "GEO", "id": "GSM3138598", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of the dnaB-Ts single mutant ( strain 2429 ) and the dnaB-Ts \u0394ahpC double mutant ( strain 3780 ) were diluted 100-fold into fresh <Med> SB medium </Med> ( 3.2 % peptone , 2 % yeast extract and 1 % NaCl ) , and they were then grown at 30 \u00b0C to early-log phase ( OD600 = 0.15 ) . Next these log-phase cultures were diluted 20-fold into 200 ml pre-warmed , fresh SB medium , and they were grown at 30 \u00b0C for another 60 min . "}], "externalCrossReferences": [{"objectId": "GSM3138598", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30948634"}]}{"id": "MCO000003163", "name": "SB medium", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "SB medium", "term_id": "MCO000003163", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114262/GSE114262.soft.gz", "source": "GEO", "id": "GSM3138598", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of the dnaB-Ts single mutant ( strain 2429 ) and the dnaB-Ts \u0394ahpC double mutant ( strain 3780 ) were diluted 100-fold into fresh <Med> SB medium </Med> ( 3.2 % peptone , 2 % yeast extract and 1 % NaCl ) , and they were then grown at 30 \u00b0C to early-log phase ( OD600 = 0.15 ) . Next these log-phase cultures were diluted 20-fold into 200 ml pre-warmed , fresh SB medium , and they were grown at 30 \u00b0C for another 60 min . "}], "externalCrossReferences": [{"objectId": "GSM3138598", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30948634"}]}{"id": "MCO000003163", "name": "SB medium", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "SB medium", "term_id": "MCO000003163", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114262/GSE114262.soft.gz", "source": "GEO", "id": "GSM3138599", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of the dnaB-Ts single mutant ( strain 2429 ) and the dnaB-Ts \u0394ahpC double mutant ( strain 3780 ) were diluted 100-fold into fresh <Med> SB medium </Med> ( 3.2 % peptone , 2 % yeast extract and 1 % NaCl ) , and they were then grown at 30 \u00b0C to early-log phase ( OD600 = 0.15 ) . Next these log-phase cultures were diluted 20-fold into 200 ml pre-warmed , fresh SB medium , and they were grown at 30 \u00b0C for another 60 min . "}], "externalCrossReferences": [{"objectId": "GSM3138599", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30948634"}]}{"id": "MCO000003163", "name": "SB medium", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "SB medium", "term_id": "MCO000003163", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE114262/GSE114262.soft.gz", "source": "GEO", "id": "GSM3138599", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of the dnaB-Ts single mutant ( strain 2429 ) and the dnaB-Ts \u0394ahpC double mutant ( strain 3780 ) were diluted 100-fold into fresh <Med> SB medium </Med> ( 3.2 % peptone , 2 % yeast extract and 1 % NaCl ) , and they were then grown at 30 \u00b0C to early-log phase ( OD600 = 0.15 ) . Next these log-phase cultures were diluted 20-fold into 200 ml pre-warmed , fresh SB medium , and they were grown at 30 \u00b0C for another 60 min . "}], "externalCrossReferences": [{"objectId": "GSM3138599", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "30948634"}]}{"id": "MCO000002470", "name": "pLCenvZ , pPCB ( wild type )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "pLCenvZ , pPCB ( wild type )", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291044", "field": "characteristics", "associatedPhrase": "plasmid : <Gtype> pLCenvZ , pPCB ( wild type ) </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3291044", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "pLCenvZ , pPCB ( wild type )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "pLCenvZ , pPCB ( wild type )", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291045", "field": "characteristics", "associatedPhrase": "plasmid : <Gtype> pLCenvZ , pPCB ( wild type ) </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3291045", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "pLCenvZ , pPCB ( wild type )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "pLCenvZ , pPCB ( wild type )", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117326/GSE117326.soft.gz", "source": "GEO", "id": "GSM3291049", "field": "characteristics", "associatedPhrase": "plasmid : <Gtype> pLCenvZ , pPCB ( wild type ) </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3291049", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "growth_protocol", "associatedPhrase": "Escherichia coli K-12 MG1655 were cultured in <Med> LB media </Med> ( 10 g/L tryptone , 5 g/L yeast extract , 10 g/L NaCl , pH 7.4 ) under aerobic conditions at <Temp> 37 \u00b0C </Temp> . The temperature-sensitive RNase E mutant E.coli strain [ rne-3071 ( ts ) ] was cultured in <Med> LB media </Med> at 28 \u00b0C for normal culture and shift to 44 \u00b0C to deactive RNase E activity . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE67218/GSE67218.soft.gz", "source": "GEO", "id": "GSM1642593", "field": "extract_protocol", "associatedPhrase": "From the cells cultured in <Med> LB media </Med> at 37 \u2103 , total RNA was extracted using RNAsnapTM method , followed by the ethanol precipitation . rRNA was removed using ribo-zeroTM magnetic kit for bacteria in accordance with manufacturer 's instruction ( Epicentre ) . rRNA removal was confirmed using ExperionTM system . Subsequently , 4 \u00b5g of the purified RNA was fragmented to sizes of ~ 300 bp using RNA fragmentation reagent ( Ambion , Grand Island , NY ) . "}], "externalCrossReferences": [{"objectId": "GSM1642593", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002533", "name": "LB media", "description": [{"type": "string similarity", "score": 82}], "terms": [{"name": "LB media", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE67218/GSE67218.soft.gz", "source": "GEO", "id": "GSM1642594", "field": "extract_protocol", "associatedPhrase": "From the cells cultured in <Med> LB media </Med> at 37 \u2103 , total RNA was extracted using RNAsnapTM method , followed by the ethanol precipitation . rRNA was removed using ribo-zeroTM magnetic kit for bacteria in accordance with manufacturer 's instruction ( Epicentre ) . rRNA removal was confirmed using ExperionTM system . Subsequently , 4 \u00b5g of the purified RNA was fragmented to sizes of ~ 300 bp using RNA fragmentation reagent ( Ambion , Grand Island , NY ) . "}], "externalCrossReferences": [{"objectId": "GSM1642594", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "Wild type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002470", "name": "Wild type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002470", "name": "Wild type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002470", "name": "Wild type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "treatment_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli , pnp knoctout , rnb knoctout and rnr knoct out strains were cultured in <Med> LB media </Med> at <Temp> 37 \u00b0C </Temp> , RNA samples and ChIP-seq samples were collected when the growth stage of indicated cells reached to log phase or stationary phase . rne-3071 ( ts ) mutation strain was cultured in <Med> LB media </Med> at 28 \u00b0C to retain the RNase E activity or shifted to 44 \u00b0C in water bath for 30 minutes to deactivate RNase E . In order to <Gtype> inactive the rho activity , the wild type ( WT ) Wild type </Gtype> E. coli was cultured in <Med> LB media </Med> with 50 \u03bcg/ml bicyclomycin at <Temp> 37 \u00b0C </Temp> for 15 min at indicated growth condition . "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002470", "name": "Wild type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58556/GSE58556.soft.gz", "source": "GEO", "id": "GSM1413874", "field": "growth_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli K-12 ( strain BW38038 ) and BW39452 ( \u0394rpoS ) cultures were grown on <Med> MOPS glucose minimal medium </Med> with <Supp> 0.2 % glucose </Supp> as sole carbon source at <Temp> 37 \u00b0C </Temp> , pH was initially 7.4 , and the agitation speed was 500 rpm . Culture samples were harvested during logarithmic growth and following entry into stationary phase for the WT and rpoS mutant . OD600 measurements were made on a Beckman Coulter DU 800 spectrophotometer . Samples were harvested directly into ice-cold RNAlater at a 1:1 dilution to protect RNA from degradation and cells then were pelleted by centrifugation at 8000rpm for 10 minutes . Cell pellets were stored at -80 \u00b0C in an equal volume of RNAlater prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1413874", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25483350"}]}{"id": "MCO000002697", "name": "37 \u2103", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "37 \u2103", "term_id": "MCO000002697", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461156", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461156", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002697", "name": "37 \u2103", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "37 \u2103", "term_id": "MCO000002697", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461157", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461157", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002697", "name": "37 \u2103", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "37 \u2103", "term_id": "MCO000002697", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461164", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002697", "name": "37 \u2103", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "37 \u2103", "term_id": "MCO000002697", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461165", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002697", "name": "37 \u2103", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "37 \u2103", "term_id": "MCO000002697", "term_type": "Temperature", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122211/GSE122211.soft.gz", "source": "GEO", "id": "GSM3461166", "field": "growth_protocol", "associatedPhrase": "glycerol stocks of E. coli strains were inoculated into 0.2 % ( w/v ) glucose M9 minimal media . <Med> M9 minimal media </Med> was also supplemented with 1 ml trace element solution ( 100X ) , excluding MG _ no _ te _ 1 and MG _ no _ te _ 2 . The culture was incubated at <Temp> 37 \u2103 </Temp> overnight with agitation , and then was used to inoculate the fresh <Med> media </Med> . The fresh culture was incubated at 37 \u2103 with agitation to the <Phase> mid-log phase </Phase> ( OD600 \u2248 0.5 ) . 10mM glutamate was added to the media MG _ glu _ 1 and MG _ glu _ 2 . "}], "externalCrossReferences": [{"objectId": "GSM3461166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463565", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463565", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463566", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463566", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463567", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463567", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463568", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463568", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463573", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463573", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463574", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463574", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463577", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463577", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463578", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463578", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463579", "field": "characteristics", "associatedPhrase": "media : <Air> anaerobic </Air> <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463579", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463580", "field": "characteristics", "associatedPhrase": "media : <Air> anaerobic </Air> <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463580", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854833", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3854833", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854834", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3854834", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854837", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> and 100 mg/L adenine "}], "externalCrossReferences": [{"objectId": "GSM3854837", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854838", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> and 100 mg/L adenine "}], "externalCrossReferences": [{"objectId": "GSM3854838", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122296/GSE122296.soft.gz", "source": "GEO", "id": "GSM3463601", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463601", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000003239", "name": "2g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "2g/L glucose", "term_id": "MCO000003239", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122296/GSE122296.soft.gz", "source": "GEO", "id": "GSM3463602", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463602", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000011586", "name": "( 1 mM )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "( 1 mM )", "term_id": "MCO000011586", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463571", "field": "characteristics", "associatedPhrase": "supplement : <Anti> Cytidine </Anti> <Supp> ( 1 mM ) </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463571", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000011586", "name": "( 1 mM )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "( 1 mM )", "term_id": "MCO000011586", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463572", "field": "characteristics", "associatedPhrase": "supplement : <Anti> Cytidine </Anti> <Supp> ( 1 mM ) </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463572", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002775", "name": "2g/L glucose and 1 mM cytidine", "description": [{"type": "string similarity", "score": 83}], "terms": [{"name": "2g/L glucose and 1 mM cytidine", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854835", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose and 1 mM cytidine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3854835", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002775", "name": "2g/L glucose and 1 mM cytidine", "description": [{"type": "string similarity", "score": 83}], "terms": [{"name": "2g/L glucose and 1 mM cytidine", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3854836", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose and 1 mM cytidine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3854836", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002467", "name": "whole organism", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "whole organism", "term_id": "MCO000002467", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507068", "field": "characteristics", "associatedPhrase": "<Gtype> material type </Gtype> : <Gtype> whole organism </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3507068", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002467", "name": "whole organism", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "whole organism", "term_id": "MCO000002467", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507069", "field": "characteristics", "associatedPhrase": "<Gtype> material type </Gtype> : <Gtype> whole organism </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3507069", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002467", "name": "whole organism", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "whole organism", "term_id": "MCO000002467", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507070", "field": "characteristics", "associatedPhrase": "<Gtype> material type </Gtype> : <Gtype> whole organism </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3507070", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002467", "name": "whole organism", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "whole organism", "term_id": "MCO000002467", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE123554/GSE123554.soft.gz", "source": "GEO", "id": "GSM3507071", "field": "characteristics", "associatedPhrase": "<Gtype> material type </Gtype> : <Gtype> whole organism </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3507071", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "naive ( wild type )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "naive ( wild type )", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611666", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> naive ( wild type ) </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3611666", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000002470", "name": "naive ( wild type )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "naive ( wild type )", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611667", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> naive ( wild type ) </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3611667", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000002470", "name": "naive ( wild type )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "naive ( wild type )", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE126710/GSE126710.soft.gz", "source": "GEO", "id": "GSM3611668", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> naive ( wild type ) </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3611668", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31208335"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013462", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Phase> mid-log phase </Phase> bacteria culture "}], "externalCrossReferences": [{"objectId": "GSM4013462", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013463", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Phase> mid-log phase </Phase> bacteria culture "}], "externalCrossReferences": [{"objectId": "GSM4013463", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013464", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ H2O2 _ <Phase> mid-log phase </Phase> bacteria culture "}], "externalCrossReferences": [{"objectId": "GSM4013464", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013465", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ H2O2 _ <Phase> mid-log phase </Phase> bacteria culture "}], "externalCrossReferences": [{"objectId": "GSM4013465", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275442", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275442", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275443", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275443", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275444", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275444", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275458", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275458", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275459", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275459", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275460", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275460", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275461", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275461", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275466", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275466", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275467", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275467", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275472", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275473", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM4275473", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104402", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104402", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104403", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104403", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104404", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104404", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104405", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104405", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104406", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104406", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104407", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104407", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104408", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104408", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104410", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104410", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104423", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104423", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104424", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104424", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104425", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104425", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104426", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104426", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104427", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104427", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104428", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1104428", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326347", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1326347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326348", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1326348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326349", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1326349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54900/GSE54900.soft.gz", "source": "GEO", "id": "GSM1326350", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1326350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25222563"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602347", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602347", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1602347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602348", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602348", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1602348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602349", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> fructose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602349", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1602349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602350", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> fructose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602350", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1602350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602351", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602351", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1602351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602352", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602352", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1602352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603386", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> <Supp> PQ </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1603386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603386", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1603386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603387", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> <Supp> PQ </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1603387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603387", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1603387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623160", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> <pH> pH5 .5 </pH> "}], "externalCrossReferences": [{"objectId": "GSM1623160", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623160", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1623160", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623161", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> <pH> pH5 .5 </pH> "}], "externalCrossReferences": [{"objectId": "GSM1623161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623161", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1623161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900470", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900470", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1900470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900472", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900474", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900474", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900475", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900475", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900476", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900476", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900477", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900477", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900478", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900478", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900479", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900479", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900480", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900480", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900482", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900482", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900483", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900483", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900485", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900485", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900486", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900486", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900488", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900488", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900490", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900490", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900490", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1900490", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900491", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900491", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900491", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1900491", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900492", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900492", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900493", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900493", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900494", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900494", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900495", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900495", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900496", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900496", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900497", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900497", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900498", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900498", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900499", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900499", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900500", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900500", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900501", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900501", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900502", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900502", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900507", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900507", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900507", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1900507", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900509", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900509", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900510", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900510", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900513", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900513", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900514", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900514", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900515", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900515", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900516", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900516", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900518", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900518", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900520", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900520", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900521", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900521", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900522", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900522", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900524", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900524", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900525", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900525", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900526", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900526", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900527", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900527", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900529", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900529", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900530", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900530", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900531", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900531", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900532", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900532", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900534", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900534", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900536", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900536", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900537", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900537", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900538", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900538", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900539", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900539", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900540", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900540", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900541", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900541", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900542", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900542", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900543", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900543", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900544", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900544", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900545", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900545", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900546", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900546", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900547", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900547", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900548", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900548", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900549", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900549", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900550", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900550", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900551", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900551", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900552", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900552", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900553", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900553", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900554", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900554", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900555", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900555", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900556", "field": "growth_protocol", "associatedPhrase": "For the first batch ( from <Gtype> WT </Gtype> _ <Med> LB </Med> _ 1 to lacA _ M9 _ 2 ) , fresh colonies of E. coli cells were taken and inoculated in 1 ml LB and grown for 8 h at <Temp> 37 \u00b0C </Temp> . 20 \u00b5L of grown culture was taken and transferred to 3 ml LB/M9 medium supplemented with 0.3 % glucose and grown for 12 h at <Temp> 37 \u00b0C </Temp> . At 12 h , cells were harvested for the RNA-seq . For the second batch ( from <Gtype> WT </Gtype> _ 1 to aspC _ 3 ) , a 1:100 dilution from an overnight culture in M9 0.4 % glucose was done . When the late stationary phase was reached , the samples were harvested . "}], "externalCrossReferences": [{"objectId": "GSM1900556", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968346", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968346", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968347", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968348", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968349", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968350", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968351", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968352", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968353", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968354", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968355", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968355", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968356", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968356", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968357", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968357", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968358", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968358", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968359", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968359", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968360", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968360", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968361", "field": "characteristics", "associatedPhrase": "genotype/variaion : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1968361", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356687", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2356687", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356688", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2356688", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE91001/GSE91001.soft.gz", "source": "GEO", "id": "GSM2418921", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> -LCB- delta -RCB- perC : : kanR </Gtype> , coisogenic to <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2418921", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28224117"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE91001/GSE91001.soft.gz", "source": "GEO", "id": "GSM2418922", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> -LCB- delta -RCB- perC : : kanR </Gtype> , coisogenic to <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2418922", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28224117"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE91001/GSE91001.soft.gz", "source": "GEO", "id": "GSM2418923", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> -LCB- delta -RCB- perC : : kanR </Gtype> , coisogenic to <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2418923", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28224117"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "characteristics", "associatedPhrase": "replicates : <Gtype> WT </Gtype> replicate 1 / induced "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "characteristics", "associatedPhrase": "replicates : <Gtype> WT </Gtype> replicate 2 / induced "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564001", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2564001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564002", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2564002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564003", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2564003", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013462", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013462", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013463", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013463", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013464", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013464", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013465", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013465", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013466", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013466", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013467", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013467", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013468", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013468", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013470", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013471", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013471", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013472", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013473", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013473", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013474", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013474", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013475", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013475", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013476", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013476", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013477", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013477", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013478", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013478", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013479", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013479", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013480", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013480", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013481", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013481", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013482", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013482", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013483", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013483", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013484", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013484", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000002778", "name": "4g/L glucose", "description": [{"type": "string similarity", "score": 96}], "terms": [{"name": "4g/L glucose", "term_id": "MCO000002778", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013485", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal media </Med> w / <Supp> 4g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013485", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013464", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013464", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013465", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013465", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013468", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013468", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013472", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013473", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013473", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013476", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013476", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013477", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013477", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013480", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013480", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013481", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013481", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013484", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013484", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000003162", "name": "2 mM Hydrogen peroxide", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "2 mM Hydrogen peroxide", "term_id": "MCO000003162", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE135516/GSE135516.soft.gz", "source": "GEO", "id": "GSM4013485", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 2 mM Hydrogen peroxide </Supp> "}], "externalCrossReferences": [{"objectId": "GSM4013485", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31651953"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE147611/GSE147611.soft.gz", "source": "GEO", "id": "GSM4435425", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> * </Gtype> _ strand.wig : <Gtype> In </Gtype> the wig files , the scores represent the counts of uniquely aligned reads whose 5 ' ends mapped . "}], "externalCrossReferences": [{"objectId": "GSM4435425", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33568644"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE147611/GSE147611.soft.gz", "source": "GEO", "id": "GSM4435426", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> * </Gtype> _ strand.wig : <Gtype> In </Gtype> the wig files , the scores represent the counts of uniquely aligned reads whose 5 ' ends mapped . "}], "externalCrossReferences": [{"objectId": "GSM4435426", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33568644"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE147611/GSE147611.soft.gz", "source": "GEO", "id": "GSM4435427", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> * </Gtype> _ strand.wig : <Gtype> In </Gtype> the wig files , the scores represent the counts of uniquely aligned reads whose 5 ' ends mapped . "}], "externalCrossReferences": [{"objectId": "GSM4435427", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33568644"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE147611/GSE147611.soft.gz", "source": "GEO", "id": "GSM4435428", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> * </Gtype> _ strand.wig : <Gtype> In </Gtype> the wig files , the scores represent the counts of uniquely aligned reads whose 5 ' ends mapped . "}], "externalCrossReferences": [{"objectId": "GSM4435428", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33568644"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE147611/GSE147611.soft.gz", "source": "GEO", "id": "GSM4435429", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> * </Gtype> _ strand.wig : <Gtype> In </Gtype> the wig files , the scores represent the counts of uniquely aligned reads whose 5 ' ends mapped . "}], "externalCrossReferences": [{"objectId": "GSM4435429", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33568644"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE147611/GSE147611.soft.gz", "source": "GEO", "id": "GSM4435430", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> * </Gtype> _ strand.wig : <Gtype> In </Gtype> the wig files , the scores represent the counts of uniquely aligned reads whose 5 ' ends mapped . "}], "externalCrossReferences": [{"objectId": "GSM4435430", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33568644"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507165", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507166", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507167", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507167", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507168", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507168", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507169", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507169", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507170", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507170", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507171", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507171", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507172", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507172", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507173", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507173", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507174", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507174", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507175", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507175", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507176", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507176", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507177", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507177", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507178", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507178", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000000580", "name": "In", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "In", "term_id": "MCO000000580", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507179", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ content : <Gtype> In </Gtype> the . txt files the first column is the coordinate of the base corresponding to NC _ 000913.3 and the second column is the number of normalized reads at that position . All 0 values were given a pseudocount of 0.01 . Counts are normalized so that the averages of ssrA , ssrS , and rnpB are stable throughout the decay from 0 to 20 minutes "}], "externalCrossReferences": [{"objectId": "GSM2507179", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000011583", "name": "rifampicin time point 0", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "rifampicin time point 0", "term_id": "MCO000011583", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE21341/GSE21341.soft.gz", "source": "GEO", "id": "GSM533304", "field": "characteristics", "associatedPhrase": "treatment group : <Supp> rifampicin time point 0 </Supp> "}], "externalCrossReferences": [{"objectId": "GSM533304", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "20671182"}]}{"id": "MCO000000828", "name": "rifampicin time point", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "rifampicin time point", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE21341/GSE21341.soft.gz", "source": "GEO", "id": "GSM533305", "field": "characteristics", "associatedPhrase": "treatment group : <Supp> rifampicin time point </Supp> 2 "}], "externalCrossReferences": [{"objectId": "GSM533305", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "20671182"}]}{"id": "MCO000011583", "name": "rifampicin time point 4", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "rifampicin time point 4", "term_id": "MCO000011583", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE21341/GSE21341.soft.gz", "source": "GEO", "id": "GSM533306", "field": "characteristics", "associatedPhrase": "treatment group : <Supp> rifampicin time point 4 </Supp> "}], "externalCrossReferences": [{"objectId": "GSM533306", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "20671182"}]}{"id": "MCO000011583", "name": "rifampicin time point 6", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "rifampicin time point 6", "term_id": "MCO000011583", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE21341/GSE21341.soft.gz", "source": "GEO", "id": "GSM533307", "field": "characteristics", "associatedPhrase": "treatment group : <Supp> rifampicin time point 6 </Supp> "}], "externalCrossReferences": [{"objectId": "GSM533307", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "20671182"}]}{"id": "MCO000011583", "name": "rifampicin time point 8", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "rifampicin time point 8", "term_id": "MCO000011583", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE21341/GSE21341.soft.gz", "source": "GEO", "id": "GSM533308", "field": "characteristics", "associatedPhrase": "treatment group : <Supp> rifampicin time point 8 </Supp> "}], "externalCrossReferences": [{"objectId": "GSM533308", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "20671182"}]}{"id": "MCO000002470", "name": "wild-type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild-type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE44928/GSE44928.soft.gz", "source": "GEO", "id": "GSM1094082", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild-type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1094082", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "wild-type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild-type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46507/GSE46507.soft.gz", "source": "GEO", "id": "GSM1131348", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild-type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1131348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "wild-type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild-type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46507/GSE46507.soft.gz", "source": "GEO", "id": "GSM1131349", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild-type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1131349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002105", "name": "mM IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "mM IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE44928/GSE44928.soft.gz", "source": "GEO", "id": "GSM1094082", "field": "characteristics", "associatedPhrase": "condition : <Gtype> LB </Gtype> +3 g/L Glc +0.1 <Supp> mM IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1094082", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104381", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104381", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104386", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104387", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104388", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104388", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104389", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104389", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104390", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104390", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104391", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104391", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104392", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104392", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104393", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104394", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104395", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104396", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104397", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104397", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104398", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104398", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104399", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104399", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104400", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104400", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104401", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104401", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104402", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104402", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104403", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104403", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104404", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104404", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104405", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104405", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104406", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104406", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104407", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104407", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104408", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104408", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104410", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104410", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104411", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104411", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104412", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104412", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104413", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104413", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104414", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104414", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104415", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104415", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104416", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104416", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104417", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104417", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104418", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104418", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104419", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104419", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104420", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104420", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104421", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104421", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104422", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104422", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104423", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104423", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104424", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104424", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104425", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104425", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104426", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104426", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104427", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104427", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE45443/GSE45443.soft.gz", "source": "GEO", "id": "GSM1104428", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> growth at <Temp> 37 \u00b0C </Temp> in specified media "}], "externalCrossReferences": [{"objectId": "GSM1104428", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23716638"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174823", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174823", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174824", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174824", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174825", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174825", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174826", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174826", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174827", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174827", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174828", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174828", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174829", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174829", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174830", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174830", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174831", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174831", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174832", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174832", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174833", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174833", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174834", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174834", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174835", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174835", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174836", "field": "growth_protocol", "associatedPhrase": "E. coli cultures were grown at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> with glucose as the primary carbon source and harvested at mid exponetial phase . <Air> Aerobic </Air> E. coli conditions were grown in shake flasks and anaerobic conditions were grown in anoxic serum bottles . Condition specific media supplementation was added as described else where . "}], "externalCrossReferences": [{"objectId": "GSM1174836", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360031", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360031", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360032", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360032", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360033", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360033", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360034", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360034", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360035", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360035", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360036", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360036", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360037", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360037", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360038", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360038", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360039", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360039", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360040", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360040", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360041", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360041", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360042", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360042", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360043", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360043", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360044", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360044", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360045", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360045", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360046", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360046", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360047", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360047", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360048", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360048", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360049", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360049", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360050", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360050", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360051", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360051", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360052", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360052", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE56372/GSE56372.soft.gz", "source": "GEO", "id": "GSM1360053", "field": "source_name", "associatedPhrase": "<Air> Aerobic </Air> culture "}], "externalCrossReferences": [{"objectId": "GSM1360053", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24927582"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127617", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> and anaerobic cultures were grown in 600 mL aliquots of DM25 and incubated at <Temp> 37 \u00b0C </Temp> with an orbital shaking of 150 RPM and inoculated with 1/100th volume of overnight culture . Aerobic cultures were grown for 9 h while anaerobic cultures were grown for 16 h. "}], "externalCrossReferences": [{"objectId": "GSM2127617", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127617", "field": "characteristics", "associatedPhrase": "growth environment : <Air> Aerobic </Air> "}], "externalCrossReferences": [{"objectId": "GSM2127617", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127618", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> and anaerobic cultures were grown in 600 mL aliquots of DM25 and incubated at <Temp> 37 \u00b0C </Temp> with an orbital shaking of 150 RPM and inoculated with 1/100th volume of overnight culture . Aerobic cultures were grown for 9 h while anaerobic cultures were grown for 16 h. "}], "externalCrossReferences": [{"objectId": "GSM2127618", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127618", "field": "characteristics", "associatedPhrase": "growth environment : <Air> Aerobic </Air> "}], "externalCrossReferences": [{"objectId": "GSM2127618", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127619", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic </Air> and anaerobic cultures were grown in 600 mL aliquots of DM25 and incubated at <Temp> 37 \u00b0C </Temp> with an orbital shaking of 150 RPM and inoculated with 1/100th volume of overnight culture . Aerobic cultures were grown for 9 h while anaerobic cultures were grown for 16 h. "}], "externalCrossReferences": [{"objectId": "GSM2127619", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000011679", "name": "Aerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic", "term_id": "MCO000011679", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127619", "field": "characteristics", "associatedPhrase": "growth environment : <Air> Aerobic </Air> "}], "externalCrossReferences": [{"objectId": "GSM2127619", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000003317", "name": "W2 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "W2 minimal media", "term_id": "MCO000003317", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137316", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137316", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000003317", "name": "W2 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "W2 minimal media", "term_id": "MCO000003317", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137318", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137318", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000003317", "name": "W2 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "W2 minimal media", "term_id": "MCO000003317", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137319", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137319", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000003317", "name": "W2 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "W2 minimal media", "term_id": "MCO000003317", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137320", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137320", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000003317", "name": "W2 minimal media", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "W2 minimal media", "term_id": "MCO000003317", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137321", "field": "growth_protocol", "associatedPhrase": "E. coli K12 MG1655 was grown to <Phase> mid-log phase </Phase> ( <OD> O.D. 600nm 0.5 </OD> ) or to stationary phase ( <OD> O.D. 600nm 1.5 </OD> ) <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> or <Med> W2 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min . "}], "externalCrossReferences": [{"objectId": "GSM1137321", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002720", "name": "0.2 % glutamine", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glutamine", "term_id": "MCO000002720", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137318", "field": "source_name", "associatedPhrase": "Cells at mid-log phase ( OD600nm 0.5 ) in W2 media supplemented with <Supp> 0.2 % glucose </Supp> and <Supp> 0.2 % glutamine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1137318", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000002720", "name": "0.2 % glutamine", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % glutamine", "term_id": "MCO000002720", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137319", "field": "source_name", "associatedPhrase": "Cells at mid-log phase ( OD600nm 0.5 ) in W2 media supplemented with <Supp> 0.2 % glucose </Supp> and <Supp> 0.2 % glutamine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1137319", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000001665", "name": "MOPS-P 2h", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS-P 2h", "term_id": "MCO000001665", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48151/GSE48151.soft.gz", "source": "GEO", "id": "GSM1170035", "field": "characteristics", "associatedPhrase": "culture/growth condition : <Supp> MOPS-P 2h </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1170035", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23899370"}]}{"id": "MCO000001665", "name": "MOPS-P 2h", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS-P 2h", "term_id": "MCO000001665", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48151/GSE48151.soft.gz", "source": "GEO", "id": "GSM1170036", "field": "characteristics", "associatedPhrase": "culture/growth condition : <Supp> MOPS-P 2h </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1170036", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23899370"}]}{"id": "MCO000002470", "name": "WT WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174823", "field": "source_name", "associatedPhrase": "<Gtype> WT WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174823", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "WT WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174824", "field": "source_name", "associatedPhrase": "<Gtype> WT WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174824", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "WT WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174825", "field": "source_name", "associatedPhrase": "<Gtype> WT WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174825", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "WT WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564001", "field": "source_name", "associatedPhrase": "<Gtype> WT WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2564001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "WT WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564002", "field": "source_name", "associatedPhrase": "<Gtype> WT WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2564002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "WT WT", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT WT", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564003", "field": "source_name", "associatedPhrase": "<Gtype> WT WT </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2564003", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "wild type ; MG1655", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild type ; MG1655", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174823", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type ; MG1655 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174823", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "wild type ; MG1655", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild type ; MG1655", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174824", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type ; MG1655 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174824", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "wild type ; MG1655", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild type ; MG1655", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174825", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type ; MG1655 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174825", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "wild type ; MG1655", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild type ; MG1655", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174826", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type ; MG1655 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174826", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "wild type ; MG1655", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild type ; MG1655", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174827", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type ; MG1655 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174827", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "wild type ; MG1655", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild type ; MG1655", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174828", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type ; MG1655 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174828", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "wild type ; MG1655", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild type ; MG1655", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174829", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type ; MG1655 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174829", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "wild type ; MG1655", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "wild type ; MG1655", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174830", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type ; MG1655 </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1174830", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174823", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174823", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174824", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174824", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174825", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174825", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174826", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174826", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174827", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174827", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174828", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174828", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174829", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174829", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174830", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174830", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174831", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174831", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174832", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174832", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174833", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174833", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174834", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174834", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174835", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174835", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002776", "name": "M9 + 4 g/L glc ( glucose minimal media )", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "M9 + 4 g/L glc ( glucose minimal media )", "term_id": "MCO000002776", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174836", "field": "characteristics", "associatedPhrase": "basal media : <Med> M9 + 4 g/L glc ( glucose minimal media ) </Med> "}], "externalCrossReferences": [{"objectId": "GSM1174836", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "WT +", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT +", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174826", "field": "source_name", "associatedPhrase": "<Gtype> WT + </Gtype> <Supp> ade </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1174826", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "WT +", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "WT +", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174827", "field": "source_name", "associatedPhrase": "<Gtype> WT + </Gtype> <Supp> L-trp </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1174827", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331415", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331415", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331416", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331416", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331417", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331417", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331418", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331418", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331419", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331419", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331420", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331420", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331421", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331421", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331422", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331422", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331423", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331423", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002866", "name": "stationary", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "stationary", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331424", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> stationary </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1331424", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "rne wild-type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "rne wild-type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58285/GSE58285.soft.gz", "source": "GEO", "id": "GSM1405877", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> rne wild-type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1405877", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25237058"}]}{"id": "MCO000002528", "name": "MOPS glucose minimal medium", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "MOPS glucose minimal medium", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58556/GSE58556.soft.gz", "source": "GEO", "id": "GSM1413874", "field": "growth_protocol", "associatedPhrase": "<Gtype> Wild type </Gtype> E. coli K-12 ( strain BW38038 ) and BW39452 ( \u0394rpoS ) cultures were grown on <Med> MOPS glucose minimal medium </Med> with <Supp> 0.2 % glucose </Supp> as sole carbon source at <Temp> 37 \u00b0C </Temp> , pH was initially 7.4 , and the agitation speed was 500 rpm . Culture samples were harvested during logarithmic growth and following entry into stationary phase for the WT and rpoS mutant . OD600 measurements were made on a Beckman Coulter DU 800 spectrophotometer . Samples were harvested directly into ice-cold RNAlater at a 1:1 dilution to protect RNA from degradation and cells then were pelleted by centrifugation at 8000rpm for 10 minutes . Cell pellets were stored at -80 \u00b0C in an equal volume of RNAlater prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1413874", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25483350"}]}{"id": "MCO000002864", "name": "log phase sample", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "log phase sample", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58556/GSE58556.soft.gz", "source": "GEO", "id": "GSM1413874", "field": "characteristics", "associatedPhrase": "treatment : <Phase> log phase sample </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1413874", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25483350"}]}{"id": "MCO000002105", "name": "1mM IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "1mM IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58637/GSE58637.soft.gz", "source": "GEO", "id": "GSM1415871", "field": "treatment_protocol", "associatedPhrase": "At OD ~ 0.3 , cultures were induced with <Supp> 1mM IPTG </Supp> for the appropriate length of time . "}], "externalCrossReferences": [{"objectId": "GSM1415871", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25030700"}]}{"id": "MCO000002105", "name": "1mM IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "1mM IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58637/GSE58637.soft.gz", "source": "GEO", "id": "GSM1415872", "field": "treatment_protocol", "associatedPhrase": "At OD ~ 0.3 , cultures were induced with <Supp> 1mM IPTG </Supp> for the appropriate length of time . "}], "externalCrossReferences": [{"objectId": "GSM1415872", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25030700"}]}{"id": "MCO000002105", "name": "1mM IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "1mM IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462936", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 1mM IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2462936", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000002105", "name": "1mM IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "1mM IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462937", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 1mM IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2462937", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000002105", "name": "1mM IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "1mM IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE77617/GSE77617.soft.gz", "source": "GEO", "id": "GSM2462938", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 1mM IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2462938", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28139975"}]}{"id": "MCO000002470", "name": "Wild-type", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wild-type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE60107/GSE60107.soft.gz", "source": "GEO", "id": "GSM1465035", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> Wild-type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1465035", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2575788830486791"}]}{"id": "MCO000002469", "name": "RNase II mutant", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "RNase II mutant", "term_id": "MCO000002469", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE60107/GSE60107.soft.gz", "source": "GEO", "id": "GSM1465036", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> RNase II mutant </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1465036", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2575788830486791"}]}{"id": "MCO000002469", "name": "RNase R mutant", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "RNase R mutant", "term_id": "MCO000002469", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE60107/GSE60107.soft.gz", "source": "GEO", "id": "GSM1465037", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> RNase R mutant </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1465037", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2575788830486791"}]}{"id": "MCO000002469", "name": "PNPase mutant", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "PNPase mutant", "term_id": "MCO000002469", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE60107/GSE60107.soft.gz", "source": "GEO", "id": "GSM1465038", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> PNPase mutant </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1465038", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2575788830486791"}]}{"id": "MCO000002533", "name": "LB medium ,", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB medium ,", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590712", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590712", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002533", "name": "LB medium ,", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB medium ,", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590717", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590717", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002533", "name": "LB medium ,", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB medium ,", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590718", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590718", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002533", "name": "LB medium ,", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB medium ,", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590719", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590719", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002533", "name": "LB medium ,", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB medium ,", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590720", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590720", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002533", "name": "LB medium ,", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB medium ,", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590721", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590721", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002533", "name": "LB medium ,", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB medium ,", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590722", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium , </Med> <Temp> 37 \u00b0C </Temp> , airated , constant pH 7.5 "}], "externalCrossReferences": [{"objectId": "GSM1590722", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000011582", "name": "250 uM of paraquat", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "250 uM of paraquat", "term_id": "MCO000011582", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603386", "field": "characteristics", "associatedPhrase": "treated with : <Supp> 250 uM of paraquat </Supp> at mid-log pahse for <Supp> 20 min </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1603386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000011582", "name": "250 uM of paraquat", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "250 uM of paraquat", "term_id": "MCO000011582", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603387", "field": "characteristics", "associatedPhrase": "treated with : <Supp> 250 uM of paraquat </Supp> at mid-log pahse for <Supp> 20 min </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1603387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000011582", "name": "250 uM of paraquat", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "250 uM of paraquat", "term_id": "MCO000011582", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603388", "field": "characteristics", "associatedPhrase": "treated with : <Supp> 250 uM of paraquat </Supp> at mid-log pahse for <Supp> 20 min </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1603388", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000011582", "name": "250 uM of paraquat", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "250 uM of paraquat", "term_id": "MCO000011582", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603389", "field": "characteristics", "associatedPhrase": "treated with : <Supp> 250 uM of paraquat </Supp> at mid-log pahse for <Supp> 20 min </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1603389", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000011582", "name": "250 uM of paraquat", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "250 uM of paraquat", "term_id": "MCO000011582", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603391", "field": "characteristics", "associatedPhrase": "treated with : <Supp> 250 uM of paraquat </Supp> at mid-log pahse for <Supp> 20 min </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1603391", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000011582", "name": "250 uM of paraquat", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "250 uM of paraquat", "term_id": "MCO000011582", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603392", "field": "characteristics", "associatedPhrase": "treated with : <Supp> 250 uM of paraquat </Supp> at mid-log pahse for <Supp> 20 min </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1603392", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000011582", "name": "250 uM of paraquat", "description": [{"type": "string similarity", "score": 92}], "terms": [{"name": "250 uM of paraquat", "term_id": "MCO000011582", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65711/GSE65711.soft.gz", "source": "GEO", "id": "GSM1603393", "field": "characteristics", "associatedPhrase": "treated with : <Supp> 250 uM of paraquat </Supp> at mid-log pahse for <Supp> 20 min </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1603393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26279566"}]}{"id": "MCO000002564", "name": "OD600 = 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 = 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623160", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623160", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002564", "name": "OD600 = 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 = 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623161", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002564", "name": "OD600 = 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 = 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623162", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623162", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002564", "name": "OD600 = 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 = 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623163", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623163", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002564", "name": "OD600 = 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 = 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623164", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002564", "name": "OD600 = 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 = 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623165", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002564", "name": "OD600 = 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 = 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623166", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002564", "name": "OD600 = 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 = 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623167", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) "}], "externalCrossReferences": [{"objectId": "GSM1623167", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000011472", "name": "cell type", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "cell type", "term_id": "MCO000011472", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE67218/GSE67218.soft.gz", "source": "GEO", "id": "GSM1642593", "field": "characteristics", "associatedPhrase": "<Gtype> cell type </Gtype> : Escherichia coli str . <Strain> K-12 </Strain> substr . <Substrain> MG1655 </Substrain> "}], "externalCrossReferences": [{"objectId": "GSM1642593", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000011472", "name": "cell type", "description": [{"type": "string similarity", "score": 80}], "terms": [{"name": "cell type", "term_id": "MCO000011472", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE67218/GSE67218.soft.gz", "source": "GEO", "id": "GSM1642594", "field": "characteristics", "associatedPhrase": "<Gtype> cell type </Gtype> : Escherichia coli str . <Strain> K-12 </Strain> substr . <Substrain> MG1655 </Substrain> "}], "externalCrossReferences": [{"objectId": "GSM1642594", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900470", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900472", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900474", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900474", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900475", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900475", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900476", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900476", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900477", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900477", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900478", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900478", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900479", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900479", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900480", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900480", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900482", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900482", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900483", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900483", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900485", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900485", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900486", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900486", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900488", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900488", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900490", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900490", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900491", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900491", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900492", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900492", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900493", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900493", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900494", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900494", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900495", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900495", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900496", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900496", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900497", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900497", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900498", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900498", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900499", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900499", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900500", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900500", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900501", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900501", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002772", "name": "0.3 % glucose", "description": [{"type": "string similarity", "score": 91}], "terms": [{"name": "0.3 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900502", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.3 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900502", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900507", "field": "source_name", "associatedPhrase": "Whole cell , WT , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900507", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900509", "field": "source_name", "associatedPhrase": "Whole cell , mgtA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900509", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900510", "field": "source_name", "associatedPhrase": "Whole cell , mgtA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900510", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900513", "field": "source_name", "associatedPhrase": "Whole cell , gabT KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900513", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900514", "field": "source_name", "associatedPhrase": "Whole cell , gabT KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900514", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900515", "field": "source_name", "associatedPhrase": "Whole cell , sdhC KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900515", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900516", "field": "source_name", "associatedPhrase": "Whole cell , sdhC KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900516", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900518", "field": "source_name", "associatedPhrase": "Whole cell , putP KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900518", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900520", "field": "source_name", "associatedPhrase": "Whole cell , putP KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900520", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900521", "field": "source_name", "associatedPhrase": "Whole cell , rfbA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900521", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900522", "field": "source_name", "associatedPhrase": "Whole cell , rfbA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900522", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900524", "field": "source_name", "associatedPhrase": "Whole cell , entF KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900524", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900525", "field": "source_name", "associatedPhrase": "Whole cell , entF KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900525", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900526", "field": "source_name", "associatedPhrase": "Whole cell , entF KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900526", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900527", "field": "source_name", "associatedPhrase": "Whole cell , kefB KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900527", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900529", "field": "source_name", "associatedPhrase": "Whole cell , kefB KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900529", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900530", "field": "source_name", "associatedPhrase": "Whole cell , cysA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900530", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900531", "field": "source_name", "associatedPhrase": "Whole cell , cysA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900531", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900532", "field": "source_name", "associatedPhrase": "Whole cell , cysA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900532", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900534", "field": "source_name", "associatedPhrase": "Whole cell , galE KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900534", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900536", "field": "source_name", "associatedPhrase": "Whole cell , mhpD KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900536", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900537", "field": "source_name", "associatedPhrase": "Whole cell , mhpD KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900537", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900538", "field": "source_name", "associatedPhrase": "Whole cell , mhpD KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900538", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900539", "field": "source_name", "associatedPhrase": "Whole cell , fliY KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900539", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900540", "field": "source_name", "associatedPhrase": "Whole cell , fliY KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900540", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900541", "field": "source_name", "associatedPhrase": "Whole cell , fliY KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900541", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900542", "field": "source_name", "associatedPhrase": "Whole cell , lplA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900542", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900543", "field": "source_name", "associatedPhrase": "Whole cell , lplA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900543", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900544", "field": "source_name", "associatedPhrase": "Whole cell , lplA KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900544", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900545", "field": "source_name", "associatedPhrase": "Whole cell , khc KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900545", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900546", "field": "source_name", "associatedPhrase": "Whole cell , khc KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900546", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900547", "field": "source_name", "associatedPhrase": "Whole cell , khc KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900547", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900548", "field": "source_name", "associatedPhrase": "Whole cell , ugpC KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900548", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900549", "field": "source_name", "associatedPhrase": "Whole cell , ugpC KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900549", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900550", "field": "source_name", "associatedPhrase": "Whole cell , ugpC KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900550", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900551", "field": "source_name", "associatedPhrase": "Whole cell , trpD KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900551", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900552", "field": "source_name", "associatedPhrase": "Whole cell , trpD KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900552", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900553", "field": "source_name", "associatedPhrase": "Whole cell , trpD KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900553", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900554", "field": "source_name", "associatedPhrase": "Whole cell , aspC KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900554", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900555", "field": "source_name", "associatedPhrase": "Whole cell , aspC KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900555", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000000245", "name": "% glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "% glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900556", "field": "source_name", "associatedPhrase": "Whole cell , aspC KO , M9 and 0.4 <Supp> % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900556", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900507", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900507", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900509", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900509", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900510", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900510", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900513", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900513", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900514", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900514", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900515", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900515", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900516", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900516", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900518", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900518", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900520", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900520", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900521", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900521", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900522", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900522", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900524", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900524", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900525", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900525", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900526", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900526", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900527", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900527", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900529", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900529", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900530", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900530", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900531", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900531", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900532", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900532", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900534", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900534", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900536", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900536", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900537", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900537", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900538", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900538", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900539", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900539", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900540", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900540", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900541", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900541", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900542", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900542", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900543", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900543", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900544", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900544", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900545", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900545", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900546", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900546", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900547", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900547", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900548", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900548", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900549", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900549", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900550", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900550", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900551", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900551", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900552", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900552", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900553", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900553", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900554", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900554", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900555", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900555", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000002771", "name": "0.4 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.4 % glucose", "term_id": "MCO000002771", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73672/GSE73672.soft.gz", "source": "GEO", "id": "GSM1900556", "field": "characteristics", "associatedPhrase": "treatment : <Supp> 0.4 % glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1900556", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27713404"}]}{"id": "MCO000003177", "name": "OD600 of about 0.8", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of about 0.8", "term_id": "MCO000003177", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73969/GSE73969.soft.gz", "source": "GEO", "id": "GSM1906887", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of bacteria were diluted 1:100 in fresh LB broth and grown to logarithmic phase at an <OD> OD600 of about 0.8 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM1906887", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2717363528288207"}]}{"id": "MCO000003177", "name": "OD600 of about 0.8", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of about 0.8", "term_id": "MCO000003177", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73969/GSE73969.soft.gz", "source": "GEO", "id": "GSM1906888", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of bacteria were diluted 1:100 in fresh LB broth and grown to logarithmic phase at an <OD> OD600 of about 0.8 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM1906888", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2717363528288207"}]}{"id": "MCO000003177", "name": "OD600 of about 0.8", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of about 0.8", "term_id": "MCO000003177", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73969/GSE73969.soft.gz", "source": "GEO", "id": "GSM1906889", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of bacteria were diluted 1:100 in fresh LB broth and grown to logarithmic phase at an <OD> OD600 of about 0.8 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM1906889", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2717363528288207"}]}{"id": "MCO000003177", "name": "OD600 of about 0.8", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of about 0.8", "term_id": "MCO000003177", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73969/GSE73969.soft.gz", "source": "GEO", "id": "GSM1906890", "field": "growth_protocol", "associatedPhrase": "Overnight cultures of bacteria were diluted 1:100 in fresh LB broth and grown to logarithmic phase at an <OD> OD600 of about 0.8 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM1906890", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2717363528288207"}]}{"id": "MCO000002772", "name": "0.5 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.5 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE74809/GSE74809.soft.gz", "source": "GEO", "id": "GSM1933982", "field": "growth_protocol", "associatedPhrase": "M9 defined medium ( 0.6 % Na2HPO4 , 0.3 % KH2PO4 , 0.05 % NaCl , 0.01 % NH4Cl , 0.1 mM CaCl2 , 1 mM MgSO4 , 5 x 10 \u2212 4 % Thiamin ) supplemented with <Supp> 0.5 % glucose </Supp> and 0.1 % amino acids was used for RNA-seq experiments . "}], "externalCrossReferences": [{"objectId": "GSM1933982", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29686109"}]}{"id": "MCO000002772", "name": "0.5 % glucose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.5 % glucose", "term_id": "MCO000002772", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE74809/GSE74809.soft.gz", "source": "GEO", "id": "GSM1933999", "field": "growth_protocol", "associatedPhrase": "M9 defined medium ( 0.6 % Na2HPO4 , 0.3 % KH2PO4 , 0.05 % NaCl , 0.01 % NH4Cl , 0.1 mM CaCl2 , 1 mM MgSO4 , 5 x 10 \u2212 4 % Thiamin ) supplemented with <Supp> 0.5 % glucose </Supp> and 0.1 % amino acids was used for RNA-seq experiments . "}], "externalCrossReferences": [{"objectId": "GSM1933999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29686109"}]}{"id": "MCO000002866", "name": "Late Stationary", "description": [{"type": "string similarity", "score": 84}], "terms": [{"name": "Late Stationary", "term_id": "MCO000002866", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE74809/GSE74809.soft.gz", "source": "GEO", "id": "GSM1933999", "field": "characteristics", "associatedPhrase": "growth phase : <Gtype> Late Stationary </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1933999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29686109"}]}{"id": "MCO000002790", "name": "50 \u00b5M NiCl2", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "50 \u00b5M NiCl2", "term_id": "MCO000002790", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975603", "field": "growth_protocol", "associatedPhrase": "Transcriptomic analyses were carried out after growing bacteria in minimal media supplemented with <Supp> glucose </Supp> . Several Ni concentrations and exposure times were assayed . rcnA gene expression was taken as an internal control to arbitrate between the different conditions . rcnA is induced by Ni when cells are overloaded with this ion and must detoxify the cytoplasm by extruding excess metal via the RcnAB efflux system . rcnA induction was maximised after culture incubation for 10 min , and longer periods of incubation lead to a decline in rcnA expression ( Fig . S1 ) . For the RNA-Seq experiments , bacteria were grown until O.D600nm = 0.3 , were treated with <Supp> 50 \u00b5M NiCl2 </Supp> for 10 min and were frozen prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1975603", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002790", "name": "50 \u00b5M NiCl2", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "50 \u00b5M NiCl2", "term_id": "MCO000002790", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975604", "field": "growth_protocol", "associatedPhrase": "Transcriptomic analyses were carried out after growing bacteria in minimal media supplemented with <Supp> glucose </Supp> . Several Ni concentrations and exposure times were assayed . rcnA gene expression was taken as an internal control to arbitrate between the different conditions . rcnA is induced by Ni when cells are overloaded with this ion and must detoxify the cytoplasm by extruding excess metal via the RcnAB efflux system . rcnA induction was maximised after culture incubation for 10 min , and longer periods of incubation lead to a decline in rcnA expression ( Fig . S1 ) . For the RNA-Seq experiments , bacteria were grown until O.D600nm = 0.3 , were treated with <Supp> 50 \u00b5M NiCl2 </Supp> for 10 min and were frozen prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1975604", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002790", "name": "50 \u00b5M NiCl2", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "50 \u00b5M NiCl2", "term_id": "MCO000002790", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975605", "field": "growth_protocol", "associatedPhrase": "Transcriptomic analyses were carried out after growing bacteria in minimal media supplemented with <Supp> glucose </Supp> . Several Ni concentrations and exposure times were assayed . rcnA gene expression was taken as an internal control to arbitrate between the different conditions . rcnA is induced by Ni when cells are overloaded with this ion and must detoxify the cytoplasm by extruding excess metal via the RcnAB efflux system . rcnA induction was maximised after culture incubation for 10 min , and longer periods of incubation lead to a decline in rcnA expression ( Fig . S1 ) . For the RNA-Seq experiments , bacteria were grown until O.D600nm = 0.3 , were treated with <Supp> 50 \u00b5M NiCl2 </Supp> for 10 min and were frozen prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1975605", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002790", "name": "50 \u00b5M NiCl2", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "50 \u00b5M NiCl2", "term_id": "MCO000002790", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975606", "field": "growth_protocol", "associatedPhrase": "Transcriptomic analyses were carried out after growing bacteria in minimal media supplemented with <Supp> glucose </Supp> . Several Ni concentrations and exposure times were assayed . rcnA gene expression was taken as an internal control to arbitrate between the different conditions . rcnA is induced by Ni when cells are overloaded with this ion and must detoxify the cytoplasm by extruding excess metal via the RcnAB efflux system . rcnA induction was maximised after culture incubation for 10 min , and longer periods of incubation lead to a decline in rcnA expression ( Fig . S1 ) . For the RNA-Seq experiments , bacteria were grown until O.D600nm = 0.3 , were treated with <Supp> 50 \u00b5M NiCl2 </Supp> for 10 min and were frozen prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1975606", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002790", "name": "50 \u00b5M NiCl2", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "50 \u00b5M NiCl2", "term_id": "MCO000002790", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975607", "field": "growth_protocol", "associatedPhrase": "Transcriptomic analyses were carried out after growing bacteria in minimal media supplemented with <Supp> glucose </Supp> . Several Ni concentrations and exposure times were assayed . rcnA gene expression was taken as an internal control to arbitrate between the different conditions . rcnA is induced by Ni when cells are overloaded with this ion and must detoxify the cytoplasm by extruding excess metal via the RcnAB efflux system . rcnA induction was maximised after culture incubation for 10 min , and longer periods of incubation lead to a decline in rcnA expression ( Fig . S1 ) . For the RNA-Seq experiments , bacteria were grown until O.D600nm = 0.3 , were treated with <Supp> 50 \u00b5M NiCl2 </Supp> for 10 min and were frozen prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1975607", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002790", "name": "50 \u00b5M NiCl2", "description": [{"type": "string similarity", "score": 95}], "terms": [{"name": "50 \u00b5M NiCl2", "term_id": "MCO000002790", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975608", "field": "growth_protocol", "associatedPhrase": "Transcriptomic analyses were carried out after growing bacteria in minimal media supplemented with <Supp> glucose </Supp> . Several Ni concentrations and exposure times were assayed . rcnA gene expression was taken as an internal control to arbitrate between the different conditions . rcnA is induced by Ni when cells are overloaded with this ion and must detoxify the cytoplasm by extruding excess metal via the RcnAB efflux system . rcnA induction was maximised after culture incubation for 10 min , and longer periods of incubation lead to a decline in rcnA expression ( Fig . S1 ) . For the RNA-Seq experiments , bacteria were grown until O.D600nm = 0.3 , were treated with <Supp> 50 \u00b5M NiCl2 </Supp> for 10 min and were frozen prior to RNA extraction . "}], "externalCrossReferences": [{"objectId": "GSM1975608", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002564", "name": "OD600 of ~ 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of ~ 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122743", "field": "growth_protocol", "associatedPhrase": "E. coli strain NM580 ( genotype MG1655 ermBL-ermB ' : <Gtype> : LacZ </Gtype> ) cells were grown in LB broth ( <Temp> 37 \u00b0C </Temp> ) until <OD> OD600 of ~ 0.3 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM2122743", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000002564", "name": "OD600 of ~ 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of ~ 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122744", "field": "growth_protocol", "associatedPhrase": "E. coli strain NM580 ( genotype MG1655 ermBL-ermB ' : <Gtype> : LacZ </Gtype> ) cells were grown in LB broth ( <Temp> 37 \u00b0C </Temp> ) until <OD> OD600 of ~ 0.3 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM2122744", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000002564", "name": "OD600 of ~ 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of ~ 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122745", "field": "growth_protocol", "associatedPhrase": "E. coli strain NM580 ( genotype MG1655 ermBL-ermB ' : <Gtype> : LacZ </Gtype> ) cells were grown in LB broth ( <Temp> 37 \u00b0C </Temp> ) until <OD> OD600 of ~ 0.3 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM2122745", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000002564", "name": "OD600 of ~ 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of ~ 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122746", "field": "growth_protocol", "associatedPhrase": "E. coli strain NM580 ( genotype MG1655 ermBL-ermB ' : <Gtype> : LacZ </Gtype> ) cells were grown in LB broth ( <Temp> 37 \u00b0C </Temp> ) until <OD> OD600 of ~ 0.3 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM2122746", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000002564", "name": "OD600 of ~ 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of ~ 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122747", "field": "growth_protocol", "associatedPhrase": "E. coli strain NM580 ( genotype MG1655 ermBL-ermB ' : <Gtype> : LacZ </Gtype> ) cells were grown in LB broth ( <Temp> 37 \u00b0C </Temp> ) until <OD> OD600 of ~ 0.3 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM2122747", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000002564", "name": "OD600 of ~ 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of ~ 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122748", "field": "growth_protocol", "associatedPhrase": "E. coli strain NM580 ( genotype MG1655 ermBL-ermB ' : <Gtype> : LacZ </Gtype> ) cells were grown in LB broth ( <Temp> 37 \u00b0C </Temp> ) until <OD> OD600 of ~ 0.3 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM2122748", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000002564", "name": "OD600 of ~ 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of ~ 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122749", "field": "growth_protocol", "associatedPhrase": "E. coli strain NM580 ( genotype MG1655 ermBL-ermB ' : <Gtype> : LacZ </Gtype> ) cells were grown in LB broth ( <Temp> 37 \u00b0C </Temp> ) until <OD> OD600 of ~ 0.3 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM2122749", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000002564", "name": "OD600 of ~ 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of ~ 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122750", "field": "growth_protocol", "associatedPhrase": "E. coli strain NM580 ( genotype MG1655 ermBL-ermB ' : <Gtype> : LacZ </Gtype> ) cells were grown in LB broth ( <Temp> 37 \u00b0C </Temp> ) until <OD> OD600 of ~ 0.3 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM2122750", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000002564", "name": "OD600 of ~ 0.3", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "OD600 of ~ 0.3", "term_id": "MCO000002564", "term_type": "Optical Density (OD)", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80251/GSE80251.soft.gz", "source": "GEO", "id": "GSM2122751", "field": "growth_protocol", "associatedPhrase": "E. coli strain NM580 ( genotype MG1655 ermBL-ermB ' : <Gtype> : LacZ </Gtype> ) cells were grown in LB broth ( <Temp> 37 \u00b0C </Temp> ) until <OD> OD600 of ~ 0.3 </OD> . "}], "externalCrossReferences": [{"objectId": "GSM2122751", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27645242"}]}{"id": "MCO000011680", "name": "Aerobic and anaerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic and anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127617", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic and anaerobic </Air> cultures were grown in 600 mL aliquots of DM25 and incubated at <Temp> 37 \u00b0C </Temp> with an orbital shaking of 150 RPM and inoculated with 1/100th volume of overnight culture . Aerobic cultures were grown for 9 h while anaerobic cultures were grown for 16 h. "}], "externalCrossReferences": [{"objectId": "GSM2127617", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000011680", "name": "Aerobic and anaerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic and anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127618", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic and anaerobic </Air> cultures were grown in 600 mL aliquots of DM25 and incubated at <Temp> 37 \u00b0C </Temp> with an orbital shaking of 150 RPM and inoculated with 1/100th volume of overnight culture . Aerobic cultures were grown for 9 h while anaerobic cultures were grown for 16 h. "}], "externalCrossReferences": [{"objectId": "GSM2127618", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000011680", "name": "Aerobic and anaerobic", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Aerobic and anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE80451/GSE80451.soft.gz", "source": "GEO", "id": "GSM2127619", "field": "growth_protocol", "associatedPhrase": "<Air> Aerobic and anaerobic </Air> cultures were grown in 600 mL aliquots of DM25 and incubated at <Temp> 37 \u00b0C </Temp> with an orbital shaking of 150 RPM and inoculated with 1/100th volume of overnight culture . Aerobic cultures were grown for 9 h while anaerobic cultures were grown for 16 h. "}], "externalCrossReferences": [{"objectId": "GSM2127619", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28103245"}]}{"id": "MCO000002470", "name": "Wildtype", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wildtype", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157648", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> Wildtype </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2157648", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "Wildtype", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wildtype", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157649", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> Wildtype </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2157649", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "Wildtype", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wildtype", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157650", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> Wildtype </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2157650", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "Wildtype", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wildtype", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157654", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> Wildtype </Gtype> with <Supp> vector </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2157654", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "Wildtype", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Wildtype", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE81584/GSE81584.soft.gz", "source": "GEO", "id": "GSM2157655", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> Wildtype </Gtype> with <Supp> vector </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2157655", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002063", "name": "100 %", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "100 %", "term_id": "MCO000002063", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87856/GSE87856.soft.gz", "source": "GEO", "id": "GSM2341961", "field": "characteristics", "associatedPhrase": "rpos level : <Supp> 100 % </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2341961", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28115545"}]}{"id": "MCO000002063", "name": "100 %", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "100 %", "term_id": "MCO000002063", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87856/GSE87856.soft.gz", "source": "GEO", "id": "GSM2341964", "field": "characteristics", "associatedPhrase": "rpos level : <Supp> 100 % </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2341964", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28115545"}]}{"id": "MCO000000748", "name": "0 %", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0 %", "term_id": "MCO000000748", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87856/GSE87856.soft.gz", "source": "GEO", "id": "GSM2341962", "field": "characteristics", "associatedPhrase": "rpos level : <Supp> 0 % </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2341962", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28115545"}]}{"id": "MCO000000748", "name": "0 %", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0 %", "term_id": "MCO000000748", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87856/GSE87856.soft.gz", "source": "GEO", "id": "GSM2341965", "field": "characteristics", "associatedPhrase": "rpos level : <Supp> 0 % </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2341965", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28115545"}]}{"id": "MCO000003196", "name": "26 %", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "26 %", "term_id": "MCO000003196", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87856/GSE87856.soft.gz", "source": "GEO", "id": "GSM2341963", "field": "characteristics", "associatedPhrase": "rpos level : <Supp> 26 % </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2341963", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28115545"}]}{"id": "MCO000003196", "name": "26 %", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "26 %", "term_id": "MCO000003196", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE87856/GSE87856.soft.gz", "source": "GEO", "id": "GSM2341966", "field": "characteristics", "associatedPhrase": "rpos level : <Supp> 26 % </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2341966", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28115545"}]}{"id": "MCO000002726", "name": "0.3 M of NaCl", "description": [{"type": "string similarity", "score": 84}], "terms": [{"name": "0.3 M of NaCl", "term_id": "MCO000002726", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356687", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356687", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002726", "name": "0.3 M of NaCl", "description": [{"type": "string similarity", "score": 84}], "terms": [{"name": "0.3 M of NaCl", "term_id": "MCO000002726", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356688", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356688", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002726", "name": "0.3 M of NaCl", "description": [{"type": "string similarity", "score": 84}], "terms": [{"name": "0.3 M of NaCl", "term_id": "MCO000002726", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356689", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356689", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000002726", "name": "0.3 M of NaCl", "description": [{"type": "string similarity", "score": 84}], "terms": [{"name": "0.3 M of NaCl", "term_id": "MCO000002726", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88980/GSE88980.soft.gz", "source": "GEO", "id": "GSM2356690", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT and \u0394ompR were grown to <Phase> mid-log phase </Phase> <Air> aerobically </Air> at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> . Then cells were treated with <Supp> 0.3 M of NaCl </Supp> at mid-log pahse for <Supp> 30 min </Supp> with agitation . "}], "externalCrossReferences": [{"objectId": "GSM2356690", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28526842"}]}{"id": "MCO000000402", "name": "0.2 % arabinose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % arabinose", "term_id": "MCO000000402", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90056/GSE90056.soft.gz", "source": "GEO", "id": "GSM2396709", "field": "characteristics", "associatedPhrase": "induction : <Supp> 0.2 % arabinose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2396709", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29183994"}]}{"id": "MCO000000402", "name": "0.2 % arabinose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % arabinose", "term_id": "MCO000000402", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90056/GSE90056.soft.gz", "source": "GEO", "id": "GSM2396711", "field": "characteristics", "associatedPhrase": "induction : <Supp> 0.2 % arabinose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2396711", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29183994"}]}{"id": "MCO000000402", "name": "0.2 % arabinose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % arabinose", "term_id": "MCO000000402", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90056/GSE90056.soft.gz", "source": "GEO", "id": "GSM2396713", "field": "characteristics", "associatedPhrase": "induction : <Supp> 0.2 % arabinose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2396713", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29183994"}]}{"id": "MCO000000402", "name": "0.2 % arabinose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % arabinose", "term_id": "MCO000000402", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90056/GSE90056.soft.gz", "source": "GEO", "id": "GSM2396715", "field": "characteristics", "associatedPhrase": "induction : <Supp> 0.2 % arabinose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2396715", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29183994"}]}{"id": "MCO000000402", "name": "0.2 % arabinose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % arabinose", "term_id": "MCO000000402", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90056/GSE90056.soft.gz", "source": "GEO", "id": "GSM2396717", "field": "characteristics", "associatedPhrase": "induction : <Supp> 0.2 % arabinose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2396717", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29183994"}]}{"id": "MCO000000402", "name": "0.2 % arabinose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % arabinose", "term_id": "MCO000000402", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90056/GSE90056.soft.gz", "source": "GEO", "id": "GSM2396719", "field": "characteristics", "associatedPhrase": "induction : <Supp> 0.2 % arabinose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2396719", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29183994"}]}{"id": "MCO000000402", "name": "0.2 % arabinose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % arabinose", "term_id": "MCO000000402", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90056/GSE90056.soft.gz", "source": "GEO", "id": "GSM2396739", "field": "characteristics", "associatedPhrase": "induction : <Supp> 0.2 % arabinose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2396739", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29183994"}]}{"id": "MCO000000402", "name": "0.2 % arabinose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % arabinose", "term_id": "MCO000000402", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90056/GSE90056.soft.gz", "source": "GEO", "id": "GSM2396741", "field": "characteristics", "associatedPhrase": "induction : <Supp> 0.2 % arabinose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2396741", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29183994"}]}{"id": "MCO000000402", "name": "0.2 % arabinose", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "0.2 % arabinose", "term_id": "MCO000000402", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE90056/GSE90056.soft.gz", "source": "GEO", "id": "GSM2396743", "field": "characteristics", "associatedPhrase": "induction : <Supp> 0.2 % arabinose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2396743", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29183994"}]}{"id": "MCO000011703", "name": "LB", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB", "term_id": "MCO000011703", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE91001/GSE91001.soft.gz", "source": "GEO", "id": "GSM2418921", "field": "growth_protocol", "associatedPhrase": "<Med> LB </Med> ( 5 ml ) was inoculated by a frozen stock of WT or perC-mutant strain and incubated at <Temp> 37 \u00b0C </Temp> with 225 rpm shaking . Flasks containing low-glucose DMEM were inoculated 1:100 with the overnight culture and incubated at <Temp> 37 \u00b0C </Temp> with 225 rpm shaking to mid-exponential phase ( OD600 0.3-0.5 ) . "}], "externalCrossReferences": [{"objectId": "GSM2418921", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28224117"}]}{"id": "MCO000011703", "name": "LB", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB", "term_id": "MCO000011703", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE91001/GSE91001.soft.gz", "source": "GEO", "id": "GSM2418922", "field": "growth_protocol", "associatedPhrase": "<Med> LB </Med> ( 5 ml ) was inoculated by a frozen stock of WT or perC-mutant strain and incubated at <Temp> 37 \u00b0C </Temp> with 225 rpm shaking . Flasks containing low-glucose DMEM were inoculated 1:100 with the overnight culture and incubated at <Temp> 37 \u00b0C </Temp> with 225 rpm shaking to mid-exponential phase ( OD600 0.3-0.5 ) . "}], "externalCrossReferences": [{"objectId": "GSM2418922", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28224117"}]}{"id": "MCO000011703", "name": "LB", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "LB", "term_id": "MCO000011703", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE91001/GSE91001.soft.gz", "source": "GEO", "id": "GSM2418923", "field": "growth_protocol", "associatedPhrase": "<Med> LB </Med> ( 5 ml ) was inoculated by a frozen stock of WT or perC-mutant strain and incubated at <Temp> 37 \u00b0C </Temp> with 225 rpm shaking . Flasks containing low-glucose DMEM were inoculated 1:100 with the overnight culture and incubated at <Temp> 37 \u00b0C </Temp> with 225 rpm shaking to mid-exponential phase ( OD600 0.3-0.5 ) . "}], "externalCrossReferences": [{"objectId": "GSM2418923", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28224117"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433291", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433291", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433293", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433293", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433295", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433295", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433297", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433297", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002105", "name": "IPTG", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "IPTG", "term_id": "MCO000002105", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "data_processing", "associatedPhrase": "<Supp> Supplementary </Supp> _ files _ format _ and _ <Gtype> content : The </Gtype> columns in the processed files are the following in order : <Gtype> GeneID , Length , ORF1 </Gtype> _ 1 _ mapped _ reads ( 7655775 ) , ORF1 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7178582 ) , ORF1 _ 2 _ mapped _ reads ( 7706927 ) , ORF1 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 7070827 ) , Svi3 _ 3 _ 1 _ mapped _ reads ( 8018710 ) , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8299205 ) , Svi3 _ 3 _ 2 _ mapped _ reads ( 7313736 ) , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8344539 ) , WT1 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8074159 ) , WT2 _ <Supp> IPTG </Supp> _ mapped _ reads ( 8103887 ) , ORF1 _ 1 _ coverage , ORF1 _ 1 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 2 _ coverage , ORF1 _ 2 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 1 _ coverage , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ coverage , Svi3 _ 3 _ 2 _ coverage , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ coverage , WT1 _ <Supp> IPTG </Supp> _ coverage , WT2 _ <Supp> IPTG </Supp> _ coverage , ORF1 _ 1 _ rpkm , ORF1 _ 1 _ <Supp> IPTG </Supp> _ rpkm , ORF1 _ 2 _ rpkm , ORF1 _ 2 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 1 _ rpkm , Svi3 _ 3 _ 1 _ <Supp> IPTG </Supp> _ rpkm , Svi3 _ 3 _ 2 _ rpkm , Svi3 _ 3 _ 2 _ <Supp> IPTG </Supp> _ rpkm , WT1 _ <Supp> IPTG </Supp> _ rpkm , WT2 _ <Supp> IPTG </Supp> _ rpkm , Symbol ( gene name ) , Description , KEGG Orthology , GO Component , GO Function , and GO Process "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000003316", "name": "induced 50 \u00b5M IPTG", "description": [{"type": "string similarity", "score": 90}], "terms": [{"name": "induced 50 \u00b5M IPTG", "term_id": "MCO000003316", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433290", "field": "characteristics", "associatedPhrase": "induction : <Supp> induced 50 \u00b5M IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2433290", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000003316", "name": "induced 50 \u00b5M IPTG", "description": [{"type": "string similarity", "score": 90}], "terms": [{"name": "induced 50 \u00b5M IPTG", "term_id": "MCO000003316", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433292", "field": "characteristics", "associatedPhrase": "induction : <Supp> induced 50 \u00b5M IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2433292", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000003316", "name": "induced 50 \u00b5M IPTG", "description": [{"type": "string similarity", "score": 90}], "terms": [{"name": "induced 50 \u00b5M IPTG", "term_id": "MCO000003316", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433294", "field": "characteristics", "associatedPhrase": "induction : <Supp> induced 50 \u00b5M IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2433294", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000003316", "name": "induced 50 \u00b5M IPTG", "description": [{"type": "string similarity", "score": 90}], "terms": [{"name": "induced 50 \u00b5M IPTG", "term_id": "MCO000003316", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433296", "field": "characteristics", "associatedPhrase": "induction : <Supp> induced 50 \u00b5M IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2433296", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000003316", "name": "induced 50 \u00b5M IPTG", "description": [{"type": "string similarity", "score": 90}], "terms": [{"name": "induced 50 \u00b5M IPTG", "term_id": "MCO000003316", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433298", "field": "characteristics", "associatedPhrase": "induction : <Supp> induced 50 \u00b5M IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2433298", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000003316", "name": "induced 50 \u00b5M IPTG", "description": [{"type": "string similarity", "score": 90}], "terms": [{"name": "induced 50 \u00b5M IPTG", "term_id": "MCO000003316", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE92601/GSE92601.soft.gz", "source": "GEO", "id": "GSM2433299", "field": "characteristics", "associatedPhrase": "induction : <Supp> induced 50 \u00b5M IPTG </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2433299", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29807996"}]}{"id": "MCO000002695", "name": "30", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30", "term_id": "MCO000002695", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445155", "field": "characteristics", "associatedPhrase": "time point ( minutes ) : <Supp> 30 </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2445155", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000002695", "name": "30", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30", "term_id": "MCO000002695", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445157", "field": "characteristics", "associatedPhrase": "time point ( minutes ) : <Supp> 30 </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2445157", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000002695", "name": "30", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30", "term_id": "MCO000002695", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445159", "field": "characteristics", "associatedPhrase": "time point ( minutes ) : <Supp> 30 </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2445159", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000002695", "name": "30", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "30", "term_id": "MCO000002695", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE93125/GSE93125.soft.gz", "source": "GEO", "id": "GSM2445161", "field": "characteristics", "associatedPhrase": "time point ( minutes ) : <Supp> 30 </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2445161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28959742"}]}{"id": "MCO000000828", "name": "rifampicin and", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "rifampicin and", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95310/GSE95310.soft.gz", "source": "GEO", "id": "GSM2501621", "field": "extract_protocol", "associatedPhrase": "Single colonies of P. putida strain DOT-T1E and E. coli MG1655 were grown overnight in Luria -- <Med> Bertani ( LB ) medium </Med> at <Temp> 30 \u00b0C </Temp> . Overnight cultures were diluted to a starting OD600 of 0.01 in the same medium and 50 ml aliquots were disposed in separate 250 ml Erlenmeyer flasks and incubated with shaking at 200 rpm . When cultures reached exponential phase ( 0.5 at OD600 ) , antibiotics were added at sub-lethal concentrations to the culture medium to reach a final concentration of 1 \u00b5g/ml kanamycin , 300 \u00b5g/ml ampicillin , 150 \u00b5g/ml chloramphenicol , 4 \u00b5g/ml tetracycline , 0.5 \u00b5g/ml ciprofloxacin , 300 \u00b5g/ml spectinomycin , 500 \u00b5g/ml <Supp> rifampicin and </Supp> 2 \u00b5g/ml gentamicin . Then cultures were incubated under the same conditions for one hour more . Cells were harvested by centrifugation at 8000 g for 10 min and suspended immediately in stop solution ( 95 % ( v/v ) ethanol , 5 % ( v/v ) phenol ) and pelleted by centrifugation . After that , total RNA was extracted with Trizol ( Invitrogen ) . Removal of DNA was carried out by treatment with DNase I ( Fermentas ) in combination with the RNase inhibitor RiboLock ( Fermentas ) . The integrity and quality of total RNA was assessed with an Agilent 2100 Bioanalyzer ( Agilent Technologies ) . "}], "externalCrossReferences": [{"objectId": "GSM2501621", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000000828", "name": "rifampicin and", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "rifampicin and", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95310/GSE95310.soft.gz", "source": "GEO", "id": "GSM2501622", "field": "extract_protocol", "associatedPhrase": "Single colonies of P. putida strain DOT-T1E and E. coli MG1655 were grown overnight in Luria -- <Med> Bertani ( LB ) medium </Med> at <Temp> 30 \u00b0C </Temp> . Overnight cultures were diluted to a starting OD600 of 0.01 in the same medium and 50 ml aliquots were disposed in separate 250 ml Erlenmeyer flasks and incubated with shaking at 200 rpm . When cultures reached exponential phase ( 0.5 at OD600 ) , antibiotics were added at sub-lethal concentrations to the culture medium to reach a final concentration of 1 \u00b5g/ml kanamycin , 300 \u00b5g/ml ampicillin , 150 \u00b5g/ml chloramphenicol , 4 \u00b5g/ml tetracycline , 0.5 \u00b5g/ml ciprofloxacin , 300 \u00b5g/ml spectinomycin , 500 \u00b5g/ml <Supp> rifampicin and </Supp> 2 \u00b5g/ml gentamicin . Then cultures were incubated under the same conditions for one hour more . Cells were harvested by centrifugation at 8000 g for 10 min and suspended immediately in stop solution ( 95 % ( v/v ) ethanol , 5 % ( v/v ) phenol ) and pelleted by centrifugation . After that , total RNA was extracted with Trizol ( Invitrogen ) . Removal of DNA was carried out by treatment with DNase I ( Fermentas ) in combination with the RNase inhibitor RiboLock ( Fermentas ) . The integrity and quality of total RNA was assessed with an Agilent 2100 Bioanalyzer ( Agilent Technologies ) . "}], "externalCrossReferences": [{"objectId": "GSM2501622", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516609", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516609", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516610", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516610", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516611", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516611", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516612", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516612", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516613", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516613", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516614", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516614", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516615", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516615", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516616", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516616", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516617", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516617", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516618", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516618", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516619", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516619", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516620", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516620", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516621", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516621", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516622", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516622", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516623", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516623", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516624", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516624", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516625", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516625", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516626", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516626", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516627", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516627", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516628", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516628", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516629", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516629", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516630", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516630", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516631", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516631", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516632", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516632", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516633", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516633", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516634", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516634", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516635", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516635", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516636", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516636", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516637", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516637", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002528", "name": "Neidhardt MOPS Minimal Medium ( NM3 )", "description": [{"type": "string similarity", "score": 100}], "terms": [{"name": "Neidhardt MOPS Minimal Medium ( NM3 )", "term_id": "MCO000002528", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95575/GSE95575.soft.gz", "source": "GEO", "id": "GSM2516638", "field": "growth_protocol", "associatedPhrase": "For each biological RNA-Seq replicate E coli K-12 MG1655 was subcultured from cyrostorage on Luria-Bertani ( LB ) agar overnight at <Temp> 37 \u00b0C </Temp> . A half-dozen well-isolated colonies were used to inoculate a 20 ml starter culture in <Med> Neidhardt MOPS Minimal Medium ( NM3 ) </Med> ( Neidhardt et al. , 1974 , J Bacteriol ) ( 0.2 % final glucose concentration ) supplemented with <Supp> 20 mg/L uracil </Supp> and 500 \u00b5g/L thiamine , which was incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> overnight ( ~ 18 hr ) . The overnight starter culture was diluted 1:30 to initiate the experimental culture and divided into three 500 ml flasks with 100 ml NM3 in each , which were incubated at <Temp> 37 \u00b0C </Temp> with shaking at <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2516638", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29338696"}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2563999", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2563999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2563999", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2563999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564000", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564000", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564000", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564000", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564001", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564001", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564002", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564002", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564002", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564003", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564003", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564003", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564003", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564004", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564004", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564004", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564004", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564005", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564005", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564005", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564005", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564006", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564006", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564006", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564006", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564007", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564007", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564007", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564007", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564008", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564008", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564008", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564008", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564009", "field": "growth_protocol", "associatedPhrase": "Cells were grown in TB7 supplemented with <Supp> 22 mM glucose </Supp> until OD600 ~ 1.8 . "}], "externalCrossReferences": [{"objectId": "GSM2564009", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002775", "name": "22 mM glucose", "description": [{"type": "string similarity", "score": 89}], "terms": [{"name": "22 mM glucose", "term_id": "MCO000002775", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE97406/GSE97406.soft.gz", "source": "GEO", "id": "GSM2564009", "field": "characteristics", "associatedPhrase": "media : <Gtype> Tryptone </Gtype> broth buffered to pH 7 supplemented with <Supp> 22 mM glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM2564009", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770989", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2770989", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770991", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2770991", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770994", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2770994", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770995", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2770995", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770996", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2770996", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770997", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2770997", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770998", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2770998", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2770999", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2770999", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771001", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771001", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771008", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771008", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771010", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771010", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771014", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771014", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771015", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771015", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771016", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771016", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771019", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771019", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771020", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771020", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771021", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771021", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771025", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771025", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103421/GSE103421.soft.gz", "source": "GEO", "id": "GSM2771026", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2771026", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29628307"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786596", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2786596", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786597", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2786597", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786598", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2786598", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786599", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2786599", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786600", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2786600", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786601", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2786601", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786602", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2786602", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786603", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2786603", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE103937/GSE103937.soft.gz", "source": "GEO", "id": "GSM2786604", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2786604", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29474582"}]}{"id": "MCO000002533", "name": "LB medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "LB medium", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE105133/GSE105133.soft.gz", "source": "GEO", "id": "GSM2822965", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium </Med> at 37\u00baC with 200rpm agitation . "}], "externalCrossReferences": [{"objectId": "GSM2822965", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2957708531014240"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE105133/GSE105133.soft.gz", "source": "GEO", "id": "GSM2822965", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2822965", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2957708531014240"}]}{"id": "MCO000002533", "name": "LB medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "LB medium", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE105133/GSE105133.soft.gz", "source": "GEO", "id": "GSM2822966", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium </Med> at 37\u00baC with 200rpm agitation . "}], "externalCrossReferences": [{"objectId": "GSM2822966", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2957708531014240"}]}{"id": "MCO000002533", "name": "LB medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "LB medium", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE105133/GSE105133.soft.gz", "source": "GEO", "id": "GSM2822967", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium </Med> at 37\u00baC with 200rpm agitation . "}], "externalCrossReferences": [{"objectId": "GSM2822967", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2957708531014240"}]}{"id": "MCO000002533", "name": "LB medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "LB medium", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE105133/GSE105133.soft.gz", "source": "GEO", "id": "GSM2822968", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium </Med> at 37\u00baC with 200rpm agitation . "}], "externalCrossReferences": [{"objectId": "GSM2822968", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2957708531014240"}]}{"id": "MCO000002533", "name": "LB medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "LB medium", "term_id": "MCO000002533", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE105133/GSE105133.soft.gz", "source": "GEO", "id": "GSM2822969", "field": "growth_protocol", "associatedPhrase": "<Med> LB medium </Med> at 37\u00baC with 200rpm agitation . "}], "externalCrossReferences": [{"objectId": "GSM2822969", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2957708531014240"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022135", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3022135", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3022136", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3022136", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108934", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3108934", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108935", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3108935", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108936", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3108936", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE111094/GSE111094.soft.gz", "source": "GEO", "id": "GSM3108937", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3108937", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33149261"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566393", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3566393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566394", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3566394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566395", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3566395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE117737/GSE117737.soft.gz", "source": "GEO", "id": "GSM3566396", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM3566396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31308523"}]}{"id": "MCO000011680", "name": "anaerobic", "description": [{"type": "term present on MCO"}], "terms": [{"name": "anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463579", "field": "characteristics", "associatedPhrase": "media : <Air> anaerobic </Air> <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463579", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000011680", "name": "anaerobic", "description": [{"type": "term present on MCO"}], "terms": [{"name": "anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE122295/GSE122295.soft.gz", "source": "GEO", "id": "GSM3463580", "field": "characteristics", "associatedPhrase": "media : <Air> anaerobic </Air> <Med> M9 minimal media </Med> w / <Supp> 2g/L glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM3463580", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "31797920"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275442", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275442", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275443", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275443", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275444", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275444", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275446", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275446", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275447", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275447", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275448", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275448", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275450", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275450", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275451", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275451", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275454", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275454", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275455", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275455", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275456", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275456", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275457", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275457", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275458", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275458", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275459", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275459", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275460", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275460", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275461", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275461", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275462", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275462", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275462", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal medium </Med> "}], "externalCrossReferences": [{"objectId": "GSM4275462", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275463", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275463", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275463", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal medium </Med> "}], "externalCrossReferences": [{"objectId": "GSM4275463", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275464", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275464", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275464", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal medium </Med> without phosphate "}], "externalCrossReferences": [{"objectId": "GSM4275464", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275465", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275465", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275465", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal medium </Med> without phosphate "}], "externalCrossReferences": [{"objectId": "GSM4275465", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275466", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275466", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275466", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal medium </Med> without phosphate "}], "externalCrossReferences": [{"objectId": "GSM4275466", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275467", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275467", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275467", "field": "characteristics", "associatedPhrase": "media : <Med> M9 minimal medium </Med> without phosphate "}], "externalCrossReferences": [{"objectId": "GSM4275467", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275469", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275469", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275470", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275470", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275471", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275471", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275472", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275472", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE143855/GSE143855.soft.gz", "source": "GEO", "id": "GSM4275473", "field": "growth_protocol", "associatedPhrase": "For ethanol sensors ( BaeR and CpxR ) : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium to an OD600 = 0.5 , then ethanol was added to a final concentration of 5 % . Cells were grown for <Supp> 30 min </Supp> in the presence of ethanol before being collected for <Technique> ChIP-exo </Technique> and RNA-seq . For KdpDE : Cells were grown at <Temp> 37 \u00b0C </Temp> overnight in liquid Tris maleic <Med> acid minimal medium </Med> ( TMA ) supplemented with 115 mM KCl and 0.4 % w/v Glucose , then washed twice with TMA containing 0.1 mM KCl and 0.4 % w/v Glucose . Cells were inoculated in TMA with <Supp> 0.1 mM KCl </Supp> and 0.4 % w/v Glucose and collected at an OD600 = 0.5 for <Technique> ChIP-exo </Technique> and RNA-seq analysis . For PhoRB : cells were grown in liquid <Med> M9 minimal medium </Med> until OD600 = 0.5 . Then cells were washed three times with M9 minimal medium without phosphate ( M9-P ; without Na2HPO4 and KH2PO4 ) and incubated in M9-P for 60 min ( about the doubling time of MG1655 in <Med> M9 minimal medium </Med> ) at <Temp> 37 \u00b0C </Temp> . For ZraSR : Cells were grown at <Temp> 37 \u00b0C </Temp> in liquid LB medium containing 1 mM ZnCl2 . "}], "externalCrossReferences": [{"objectId": "GSM4275473", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "33172971"}]}{"id": "MCO000011680", "name": "anaerobic", "description": [{"type": "term present on MCO"}], "terms": [{"name": "anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE43408/GSE43408.soft.gz", "source": "GEO", "id": "GSM1217969", "field": "characteristics", "associatedPhrase": "growth condition : <Air> anaerobic </Air> "}], "externalCrossReferences": [{"objectId": "GSM1217969", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23856776"}]}{"id": "MCO000011680", "name": "anaerobic", "description": [{"type": "term present on MCO"}], "terms": [{"name": "anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE43408/GSE43408.soft.gz", "source": "GEO", "id": "GSM1217970", "field": "characteristics", "associatedPhrase": "growth condition : <Air> anaerobic </Air> "}], "externalCrossReferences": [{"objectId": "GSM1217970", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "23856776"}]}{"id": "MCO000002866", "name": "stationary phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "stationary phase", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137316", "field": "characteristics", "associatedPhrase": "treatment : <Phase> stationary phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1137316", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000000836", "name": "glutamine", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glutamine", "term_id": "MCO000000836", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137318", "field": "characteristics", "associatedPhrase": "treatment : <Supp> glutamine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1137318", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000000836", "name": "glutamine", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glutamine", "term_id": "MCO000000836", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE46737/GSE46737.soft.gz", "source": "GEO", "id": "GSM1137319", "field": "characteristics", "associatedPhrase": "treatment : <Supp> glutamine </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1137319", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24461193"}]}{"id": "MCO000011680", "name": "anaerobic", "description": [{"type": "term present on MCO"}], "terms": [{"name": "anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174828", "field": "characteristics", "associatedPhrase": "oxygen condition : <Air> anaerobic </Air> "}], "externalCrossReferences": [{"objectId": "GSM1174828", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011680", "name": "anaerobic", "description": [{"type": "term present on MCO"}], "terms": [{"name": "anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174829", "field": "characteristics", "associatedPhrase": "oxygen condition : <Air> anaerobic </Air> "}], "externalCrossReferences": [{"objectId": "GSM1174829", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011680", "name": "anaerobic", "description": [{"type": "term present on MCO"}], "terms": [{"name": "anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174830", "field": "characteristics", "associatedPhrase": "oxygen condition : <Air> anaerobic </Air> "}], "externalCrossReferences": [{"objectId": "GSM1174830", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000011680", "name": "anaerobic", "description": [{"type": "term present on MCO"}], "terms": [{"name": "anaerobic", "term_id": "MCO000011680", "term_type": "Aeration", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48324/GSE48324.soft.gz", "source": "GEO", "id": "GSM1174836", "field": "characteristics", "associatedPhrase": "oxygen condition : <Air> anaerobic </Air> "}], "externalCrossReferences": [{"objectId": "GSM1174836", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24987116"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48829/GSE48829.soft.gz", "source": "GEO", "id": "GSM1185375", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1185375", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24214998"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48829/GSE48829.soft.gz", "source": "GEO", "id": "GSM1185376", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1185376", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24214998"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE48829/GSE48829.soft.gz", "source": "GEO", "id": "GSM1185377", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1185377", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24214998"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54199/GSE54199.soft.gz", "source": "GEO", "id": "GSM1310003", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1310003", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24725406"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54199/GSE54199.soft.gz", "source": "GEO", "id": "GSM1310004", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1310004", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24725406"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54199/GSE54199.soft.gz", "source": "GEO", "id": "GSM1310005", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1310005", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24725406"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE54199/GSE54199.soft.gz", "source": "GEO", "id": "GSM1310006", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1310006", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "24725406"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331409", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331409", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331410", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331410", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331411", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331411", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331412", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331412", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331413", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331413", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331414", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331414", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331415", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331415", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331416", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331416", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331417", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331417", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331418", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331418", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331419", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331419", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331420", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331420", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331421", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331421", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331422", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331422", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331423", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331423", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331424", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331424", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331426", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331426", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331427", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331427", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331428", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331428", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331429", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331429", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE55199/GSE55199.soft.gz", "source": "GEO", "id": "GSM1331430", "field": "growth_protocol", "associatedPhrase": "To harvest total RNA samples , overnight cultures of <Gtype> wild type </Gtype> MG1655 grown in LB at 37 \u02daC were diluted back 1:500 in either fresh LB or M63 minimal glucose medium and allowed to grow until the cultures reached an OD600 of ~ 0.4 and 2.0 for cultures grown in LB and an OD600 of ~ 0.4 for cultures grown in M63 . For samples grown to OD600 of ~ 0.4 a total volume of 25 ml of cells were harvested and combined with 5 ml of stop solution ( 95 % Ethanol , 5 % acid phenol ) . For samples grown to OD600 of 2.0 a total volume of 5 ml of cells were harvested and combined with 1 ml of stop solution . "}], "externalCrossReferences": [{"objectId": "GSM1331430", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25266388"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602347", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602347", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602348", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602348", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000848", "name": "fructose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "fructose", "term_id": "MCO000000848", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602349", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> fructose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000848", "name": "fructose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "fructose", "term_id": "MCO000000848", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602350", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> fructose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000910", "name": "acetate", "description": [{"type": "term present on MCO"}], "terms": [{"name": "acetate", "term_id": "MCO000000910", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602351", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000910", "name": "acetate", "description": [{"type": "term present on MCO"}], "terms": [{"name": "acetate", "term_id": "MCO000000910", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602351", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000910", "name": "acetate", "description": [{"type": "term present on MCO"}], "terms": [{"name": "acetate", "term_id": "MCO000000910", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602352", "field": "source_name", "associatedPhrase": "<Gtype> WT </Gtype> _ <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000910", "name": "acetate", "description": [{"type": "term present on MCO"}], "terms": [{"name": "acetate", "term_id": "MCO000000910", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602352", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602353", "field": "source_name", "associatedPhrase": "<Gtype> \u0394cra </Gtype> _ <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602353", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602354", "field": "source_name", "associatedPhrase": "<Gtype> \u0394cra </Gtype> _ <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602354", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> glucose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000848", "name": "fructose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "fructose", "term_id": "MCO000000848", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602355", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> fructose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602355", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000848", "name": "fructose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "fructose", "term_id": "MCO000000848", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602356", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> fructose </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602356", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000910", "name": "acetate", "description": [{"type": "term present on MCO"}], "terms": [{"name": "acetate", "term_id": "MCO000000910", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602357", "field": "source_name", "associatedPhrase": "<Gtype> \u0394cra </Gtype> _ <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602357", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000910", "name": "acetate", "description": [{"type": "term present on MCO"}], "terms": [{"name": "acetate", "term_id": "MCO000000910", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602357", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602357", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000910", "name": "acetate", "description": [{"type": "term present on MCO"}], "terms": [{"name": "acetate", "term_id": "MCO000000910", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602358", "field": "source_name", "associatedPhrase": "<Gtype> \u0394cra </Gtype> _ <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602358", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000000910", "name": "acetate", "description": [{"type": "term present on MCO"}], "terms": [{"name": "acetate", "term_id": "MCO000000910", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65642/GSE65642.soft.gz", "source": "GEO", "id": "GSM1602358", "field": "characteristics", "associatedPhrase": "carbon source : <Supp> acetate </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1602358", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29394395"}]}{"id": "MCO000003211", "name": "pH 5.5", "description": [{"type": "term present on MCO"}], "terms": [{"name": "pH 5.5", "term_id": "MCO000003211", "term_type": "pH", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623160", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623160", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003211", "name": "pH 5.5", "description": [{"type": "term present on MCO"}], "terms": [{"name": "pH 5.5", "term_id": "MCO000003211", "term_type": "pH", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623161", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623161", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003211", "name": "pH 5.5", "description": [{"type": "term present on MCO"}], "terms": [{"name": "pH 5.5", "term_id": "MCO000003211", "term_type": "pH", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623162", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623162", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003211", "name": "pH 5.5", "description": [{"type": "term present on MCO"}], "terms": [{"name": "pH 5.5", "term_id": "MCO000003211", "term_type": "pH", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623163", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623163", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003211", "name": "pH 5.5", "description": [{"type": "term present on MCO"}], "terms": [{"name": "pH 5.5", "term_id": "MCO000003211", "term_type": "pH", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623164", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623164", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003211", "name": "pH 5.5", "description": [{"type": "term present on MCO"}], "terms": [{"name": "pH 5.5", "term_id": "MCO000003211", "term_type": "pH", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623165", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003211", "name": "pH 5.5", "description": [{"type": "term present on MCO"}], "terms": [{"name": "pH 5.5", "term_id": "MCO000003211", "term_type": "pH", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623166", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000003211", "name": "pH 5.5", "description": [{"type": "term present on MCO"}], "terms": [{"name": "pH 5.5", "term_id": "MCO000003211", "term_type": "pH", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE66481/GSE66481.soft.gz", "source": "GEO", "id": "GSM1623167", "field": "growth_protocol", "associatedPhrase": "E. coli K-12 MG1655 WT , gadE , gadW and gadX mutant cells were grown to <Phase> mid-log phase </Phase> ( <OD> OD600 = 0.3 </OD> ) <Air> aerobically </Air> ( <Agit> 250 rpm </Agit> ) at <Temp> 37 \u00b0C </Temp> in <Med> M9 minimal media </Med> supplemented with <Supp> 0.2 % glucose </Supp> at <pH> pH 5.5 </pH> . "}], "externalCrossReferences": [{"objectId": "GSM1623167", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "26258987"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73969/GSE73969.soft.gz", "source": "GEO", "id": "GSM1906887", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1906887", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2717363528288207"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE73969/GSE73969.soft.gz", "source": "GEO", "id": "GSM1906888", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1906888", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2717363528288207"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968346", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968346", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968346", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968346", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968347", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968347", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968347", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968348", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968348", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968348", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968349", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968349", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968349", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968350", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968350", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968350", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968351", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968351", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968351", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968352", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968352", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968352", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968353", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968353", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968353", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968354", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968354", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968354", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968355", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968355", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968355", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968355", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968356", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968356", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968356", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968356", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968357", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968357", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968357", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968357", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968358", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968358", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968358", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968358", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968359", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968359", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968359", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968359", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968360", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968360", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968360", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968360", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968361", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968361", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968361", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968361", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968362", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968362", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968362", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968362", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968364", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968364", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968364", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968364", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968368", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968368", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968368", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968368", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968369", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968369", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968369", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968369", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968370", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968370", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968370", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968370", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968371", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968371", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968371", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968371", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968372", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968372", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968372", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968372", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968374", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968374", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968374", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968374", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968377", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968377", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968377", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968377", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968378", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968378", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968378", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968378", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968379", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968379", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968379", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968379", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968380", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968380", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968380", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968380", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968381", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968381", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968381", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968381", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968382", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968382", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968382", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968382", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968383", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968383", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968383", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968383", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968384", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968384", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968384", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968384", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968385", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968385", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968385", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968385", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968386", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968386", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968386", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968387", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968387", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968387", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968388", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968388", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968388", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968388", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968389", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968389", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968389", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968389", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968390", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968390", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968390", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968390", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968391", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968391", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968391", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968391", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968392", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968392", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968392", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968392", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968393", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968393", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968393", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968394", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968394", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968394", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968395", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968395", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968395", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968396", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968396", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968396", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968397", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968397", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968397", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968397", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968398", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968398", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968398", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968398", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968399", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968399", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968399", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968399", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968400", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968400", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968400", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968400", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968401", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968401", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968401", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968401", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968402", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968402", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968402", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968402", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968403", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968403", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968403", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968403", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968404", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968404", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968404", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968404", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968405", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968405", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968405", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968405", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968406", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968406", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968406", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968406", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968407", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968407", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968407", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968407", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968408", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968408", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968408", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968408", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968409", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968409", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968409", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968409", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968410", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968410", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968410", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968410", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968411", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968411", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968411", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968411", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968412", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968412", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968412", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968412", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968413", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968413", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968413", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968413", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968414", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968414", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968414", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968414", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968415", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968415", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968415", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968415", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968416", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968416", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968416", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968416", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968417", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968417", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968417", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968417", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968418", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968418", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968418", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968418", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968419", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968419", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968419", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968419", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968420", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968420", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968420", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968420", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968421", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968421", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968421", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968421", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968422", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968422", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968422", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968422", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968423", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968423", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968423", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968423", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968424", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968424", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968424", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968424", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968425", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968425", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968425", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968425", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968426", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968426", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968426", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968426", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968427", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968427", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968427", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968427", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968428", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968428", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968428", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968428", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968429", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968429", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968429", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968429", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968430", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968430", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968430", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968430", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968431", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968431", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968431", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968431", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968432", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968432", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968432", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968432", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968433", "field": "treatment_protocol", "associatedPhrase": "Cells were treated with <Supp> rifampicin </Supp> before sample collection . In some cases , kasugamycin was added 15 minutes before the rifampicin addition . "}], "externalCrossReferences": [{"objectId": "GSM1968433", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000000828", "name": "rifampicin", "description": [{"type": "term present on MCO"}], "terms": [{"name": "rifampicin", "term_id": "MCO000000828", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE75818/GSE75818.soft.gz", "source": "GEO", "id": "GSM1968433", "field": "characteristics", "associatedPhrase": "treatment : <Supp> rifampicin </Supp> "}], "externalCrossReferences": [{"objectId": "GSM1968433", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27198188"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975603", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1975603", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975604", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1975604", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975605", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1975605", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975606", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1975606", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975607", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1975607", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975608", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1975608", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075722", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075722", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075722", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075722", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000002526", "name": "M9 minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "M9 minimal medium", "term_id": "MCO000002526", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075723", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075723", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000000245", "name": "glucose", "description": [{"type": "term present on MCO"}], "terms": [{"name": "glucose", "term_id": "MCO000000245", "term_type": "Medium supplement", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075723", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075723", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000002866", "name": "stationary phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "stationary phase", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE94984/GSE94984.soft.gz", "source": "GEO", "id": "GSM2493797", "field": "growth_protocol", "associatedPhrase": "LB medium , 180 rpm shaking , at <Temp> 37 \u00b0C </Temp> , between exponential and <Phase> stationary phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM2493797", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28245801"}]}{"id": "MCO000002866", "name": "stationary phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "stationary phase", "term_id": "MCO000002866", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE94984/GSE94984.soft.gz", "source": "GEO", "id": "GSM2493797", "field": "source_name", "associatedPhrase": "biomass collected in the transition between exponential to <Phase> stationary phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM2493797", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28245801"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507165", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2507165", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507166", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2507166", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507167", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2507167", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507168", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2507168", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507169", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2507169", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507170", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2507170", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507171", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2507171", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507172", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2507172", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000002470", "name": "wild type", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wild type", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE95318/GSE95318.soft.gz", "source": "GEO", "id": "GSM2507173", "field": "characteristics", "associatedPhrase": "genotype/variation : <Gtype> wild type </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2507173", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "28351917"}]}{"id": "MCO000002470", "name": "wildtype", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wildtype", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE104504/GSE104504.soft.gz", "source": "GEO", "id": "GSM2802566", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wildtype </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2802566", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29205228"}]}{"id": "MCO000002470", "name": "wildtype", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wildtype", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE104504/GSE104504.soft.gz", "source": "GEO", "id": "GSM2802567", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wildtype </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM2802567", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29205228"}]}{"id": "MCO000002864", "name": "log phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "log phase", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE36248/GSE36248.soft.gz", "source": "GEO", "id": "GSM885047", "field": "source_name", "associatedPhrase": "bacteria grown at 37 \u00b0 C with shaking until <Phase> log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM885047", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE44928/GSE44928.soft.gz", "source": "GEO", "id": "GSM1094082", "field": "growth_protocol", "associatedPhrase": "Cells were grown in a 250 ml fermenter containing 100 ml LB medium supplemented with 3 g/L glucose , <Supp> 0.1 mM IPTG , </Supp> and 50 \u03bcg/mL antibiotics . The fermentors were operated at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> with aeration ( 200 mL/min ) . Flow rate was 1.162 ml/min ( dilution rate 0,7 / h ) . The pellets were used for RNA . "}], "externalCrossReferences": [{"objectId": "GSM1094082", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE44928/GSE44928.soft.gz", "source": "GEO", "id": "GSM1094083", "field": "growth_protocol", "associatedPhrase": "Cells were grown in a 250 ml fermenter containing 100 ml LB medium supplemented with 3 g/L glucose , <Supp> 0.1 mM IPTG , </Supp> and 50 \u03bcg/mL antibiotics . The fermentors were operated at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> with aeration ( 200 mL/min ) . Flow rate was 1.162 ml/min ( dilution rate 0,7 / h ) . The pellets were used for RNA . "}], "externalCrossReferences": [{"objectId": "GSM1094083", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002470", "name": "wt", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wt", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE58556/GSE58556.soft.gz", "source": "GEO", "id": "GSM1413874", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wt </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1413874", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "25483350"}]}{"id": "MCO000002470", "name": "wt", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wt", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE64848/GSE64848.soft.gz", "source": "GEO", "id": "GSM1581598", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wt </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1581598", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29771928"}]}{"id": "MCO000002470", "name": "wt", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wt", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE64848/GSE64848.soft.gz", "source": "GEO", "id": "GSM1581599", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wt </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1581599", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29771928"}]}{"id": "MCO000002470", "name": "wt", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wt", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE64848/GSE64848.soft.gz", "source": "GEO", "id": "GSM1581600", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wt </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1581600", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29771928"}]}{"id": "MCO000002470", "name": "wt", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wt", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE64848/GSE64848.soft.gz", "source": "GEO", "id": "GSM1581601", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wt </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1581601", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29771928"}]}{"id": "MCO000002470", "name": "wt", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wt", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE64848/GSE64848.soft.gz", "source": "GEO", "id": "GSM1581602", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wt </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1581602", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29771928"}]}{"id": "MCO000002470", "name": "wt", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wt", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE64848/GSE64848.soft.gz", "source": "GEO", "id": "GSM1581603", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wt </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1581603", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29771928"}]}{"id": "MCO000002470", "name": "wt", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wt", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE64848/GSE64848.soft.gz", "source": "GEO", "id": "GSM1581604", "field": "characteristics", "associatedPhrase": "strain : <Gtype> wt </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1581604", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29771928"}]}{"id": "MCO000002470", "name": "wildtype", "description": [{"type": "term present on MCO"}], "terms": [{"name": "wildtype", "term_id": "MCO000002470", "term_type": "Genetic background", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE65244/GSE65244.soft.gz", "source": "GEO", "id": "GSM1590712", "field": "characteristics", "associatedPhrase": "genotype : <Gtype> wildtype </Gtype> "}], "externalCrossReferences": [{"objectId": "GSM1590712", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000011586", "name": "minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "minimal medium", "term_id": "MCO000011586", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE67218/GSE67218.soft.gz", "source": "GEO", "id": "GSM1642593", "field": "growth_protocol", "associatedPhrase": "Glycerol stocks of E. coli K12 strain MG1655 were inoculated into LB media grown at 37 \u2103 with constant agitation overnight . Cultures were diluted 1:100 into fresh <Med> minimal medium </Med> and then cultured at 37 \u2103 to mid-exponential phase ( OD600 nm ~ 0.6 ) . "}], "externalCrossReferences": [{"objectId": "GSM1642593", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000011586", "name": "minimal medium", "description": [{"type": "term present on MCO"}], "terms": [{"name": "minimal medium", "term_id": "MCO000011586", "term_type": "Medium", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE67218/GSE67218.soft.gz", "source": "GEO", "id": "GSM1642594", "field": "growth_protocol", "associatedPhrase": "Glycerol stocks of E. coli K12 strain MG1655 were inoculated into LB media grown at 37 \u2103 with constant agitation overnight . Cultures were diluted 1:100 into fresh <Med> minimal medium </Med> and then cultured at 37 \u2103 to mid-exponential phase ( OD600 nm ~ 0.6 ) . "}], "externalCrossReferences": [{"objectId": "GSM1642594", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": ""}]}{"id": "MCO000002864", "name": "log phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "log phase", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975603", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1975603", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002864", "name": "log phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "log phase", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975604", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1975604", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002864", "name": "log phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "log phase", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975605", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1975605", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002864", "name": "log phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "log phase", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975606", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1975606", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002864", "name": "log phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "log phase", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975607", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1975607", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000002864", "name": "log phase", "description": [{"type": "term present on MCO"}], "terms": [{"name": "log phase", "term_id": "MCO000002864", "term_type": "Growth phase", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE76167/GSE76167.soft.gz", "source": "GEO", "id": "GSM1975608", "field": "characteristics", "associatedPhrase": "growth phase : <Phase> log phase </Phase> "}], "externalCrossReferences": [{"objectId": "GSM1975608", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "2737513027668277"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075722", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075722", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE78756/GSE78756.soft.gz", "source": "GEO", "id": "GSM2075723", "field": "growth_protocol", "associatedPhrase": "Escherichia coli strains E.coli C ( DSMZ 4860 ) , E. coli Crooks ( DSMZ 1576 ) , E. coli DH5\u03b1 ( DSMZ 6897 ) E. coli W ( DSMZ 1116 ) , E. coli W3110 ( DSMZ 5911 ) were obtained from DSMZ-German Collection of Microorganism and Cell Cultures ; E. coli BL21 ( DE3 ) was purchased as competent cells from Agilent ( Agilent Technologies Inc. , USA ) , E. coli K-12 MG1655 ( ATCC 700926 ) . All strains were cultured in <Med> M9 minimal medium </Med> ( 1 ) containing Na2HPO4 x 7H2O ( 6.8 g ) , KH2PO4 ( 3 g ) , NaCl ( 0.5 g ) , NH4Cl ( 1 g ) , MgSO4 ( 2 mmol ) , CaCl2 ( 0.1 mmol ) , trace elements , Wolf 's vitamin solution ( 2 ) and glucose ( 2 g L-1 ) . Anoxic <Med> M9 minimal media </Med> with <Supp> glucose </Supp> was obtained by flushing solution with oxygen free nitrogen ( 95 % ) . Overnight cultures from single colonies of each of seven E. coli strains were diluted to a starting optical density ( OD600 ) of 0.01 . Cultures were grown in 250 ml flasks or 300 ml oxygen-free sealed bottles containing 50 ml <Med> glucose-M9 minimal media </Med> in a shaking incubator at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> . "}], "externalCrossReferences": [{"objectId": "GSM2075723", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "27667363"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349915", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349915", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349916", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349916", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349917", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349917", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349918", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349918", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349919", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349919", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349920", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349920", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349921", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349921", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349922", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349922", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349923", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349923", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349924", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349924", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349925", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349925", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349926", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349926", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349927", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349927", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349928", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349928", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349929", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349929", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE88835/GSE88835.soft.gz", "source": "GEO", "id": "GSM2349930", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . For culture tube assays ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) , cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes and Erlenmeyer flasks were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2349930", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757255", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757255", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757256", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757256", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757257", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757257", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757258", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757258", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757259", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757259", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757260", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757260", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757261", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757261", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757262", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757262", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757263", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757263", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757264", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757264", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757265", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757265", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757266", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757266", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757267", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757267", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757268", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757268", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757269", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757269", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757270", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757270", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757272", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757272", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}{"id": "MCO000011588", "name": "250 rpm", "description": [{"type": "term present on MCO"}], "terms": [{"name": "250 rpm", "term_id": "MCO000011588", "term_type": "Agitation speed", "source_data": "http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions/tree/master/extraction-geo/download/srr_htregulondb/GSE98890/GSE98890.soft.gz", "source": "GEO", "id": "GSM2757273", "field": "growth_protocol", "associatedPhrase": "Individual colonies were inoculated into MOPS EZ Rich Defined Medium ( Teknova , CA , M2105 ) with 0.2 % glycerol carbon source and 50 \u03bcg/mL kanamycin ( Gold Biotechnology , MO , K-120-5 ) and grown overnight for <Supp> 16 hours </Supp> at <Temp> 37 \u00b0C </Temp> and 1000 RPM in V-bottom 96-well plates ( Nunc , Roskilde , Denmark , 249952 ) in an ELMI Digital Thermos Microplates shaker incubator ( Elmi Ltd , Riga , Latvia ) . The following day , cultures were diluted 178-fold ( two serial dilutions of 15 \u00b5L into 185 \u00b5L ) into EZ Rich glycerol with kanamycin , and grown under the same ELMI shaker incubator conditions for three hours . Cells were diluted 658-fold ( 4.56 \u00b5L into 3 mL ) into culture tubes ( Falcon 14 mL round-bottom polypropylene tubes ; Corning , MA , 352059 ) containing EZ Rich glycerol with kanamycin and inducers . For Erlenmeyer flask assays ( Pyrex 250 mL ; Cole-Palmer , IL , 4980-250 ) , cells were diluted 658-fold ( 76 \u00b5L into 50 mL ) into EZ Rich glycerol with kanamycin and inducers . Eight inducer combinations were used that cover the presence or absence of 0.5 mM IPTG , 10 ng/mL aTc , and 5 mM L-arabinose . Culture tubes were then grown in an Innova 44 shaker ( Eppendorf , CT ) at <Temp> 37 \u00b0C </Temp> and <Agit> 250 rpm </Agit> for five hours . "}], "externalCrossReferences": [{"objectId": "GSM2757273", "externalCrossReferences_name": "GEO"}], "citations": [{"evidence_id": "", "evidence_name": "NPL-CRF", "pmid": "29122925"}]}