report_Run_5_v12.txt
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70.txt
best params:{'c1': 0.08547853139018363, 'c2': 0.0718223925603791}
best CV score:0.8618282789423788
model size: 0.12M
Flat F1: 0.7935612512742225
precision recall f1-score support
OD 1.000 0.818 0.900 22
pH 1.000 1.000 1.000 8
Technique 1.000 0.870 0.930 23
Med 1.000 0.925 0.961 53
Temp 1.000 0.828 0.906 29
Vess 1.000 1.000 1.000 1
Agit 0.000 0.000 0.000 0
Phase 0.875 0.933 0.903 15
Air 0.545 0.348 0.425 69
Anti 1.000 1.000 1.000 11
Strain 0.000 0.000 0.000 1
Gtype 0.847 0.847 0.847 85
Substrain 0.000 0.000 0.000 0
Supp 0.764 0.799 0.781 134
Gversion 0.000 0.000 0.000 0
avg / total 0.825 0.772 0.794 451
Top likely transitions:
Temp -> Temp 4.726292
Med -> Med 4.671738
Supp -> Supp 4.522188
Agit -> Agit 4.377673
OD -> OD 4.308572
Gversion -> Gversion 3.866864
O -> O 3.748552
Air -> Air 3.677475
Anti -> Anti 3.637881
Phase -> Phase 3.501884
Gtype -> Gtype 3.413911
Technique -> Technique 2.611020
pH -> pH 2.492174
Substrain -> Gtype 1.323299
O -> Supp 1.082471
Gtype -> Supp 1.059136
Air -> O 1.056595
O -> Technique 0.788425
Gtype -> Air 0.726982
Supp -> O 0.721855
Technique -> Air 0.676898
Med -> O 0.566862
Temp -> O 0.505913
Gtype -> pH 0.499557
O -> Gtype 0.492671
O -> Temp 0.193445
OD -> O 0.066099
O -> Phase 0.015467
Phase -> O 0.005269
O -> Anti 0.001662
O -> Med 0.000880
Phase -> Technique -0.000017
Gversion -> Technique -0.000081
Supp -> Gversion -0.001487
Supp -> Temp -0.006942
Anti -> Air -0.014046
OD -> Med -0.020526
Air -> Temp -0.030082
O -> Strain -0.036678
Strain -> Supp -0.037261
Anti -> Technique -0.039379
O -> Agit -0.039632
Anti -> O -0.064909
Med -> Gtype -0.069251
Gversion -> Air -0.073290
Supp -> Anti -0.079850
Air -> Phase -0.086231
Gtype -> Agit -0.087068
Technique -> Med -0.107591
Temp -> Supp -0.117927
Top unlikely transitions:
Gtype -> Agit -0.087068
Technique -> Med -0.107591
Temp -> Supp -0.117927
Phase -> Med -0.126236
Agit -> Supp -0.127001
Air -> Technique -0.146743
Gtype -> Phase -0.148852
Gversion -> O -0.153972
Temp -> Air -0.155016
Gversion -> Gtype -0.163400
Supp -> pH -0.165945
Technique -> OD -0.170573
Gtype -> OD -0.180802
Supp -> OD -0.185729
Agit -> O -0.186520
Gtype -> Temp -0.191678
Temp -> Med -0.203334
Anti -> Med -0.213478
Med -> Air -0.254265
Supp -> Phase -0.272052
O -> OD -0.284249
Air -> Agit -0.299878
Gtype -> Gversion -0.302074
Technique -> O -0.304509
Supp -> Technique -0.323807
Gversion -> Supp -0.330543
OD -> Supp -0.332686
Supp -> Air -0.350244
Agit -> Air -0.351443
Air -> Med -0.356425
pH -> Supp -0.356600
Phase -> Supp -0.367295
Anti -> Supp -0.388606
Anti -> Gtype -0.420057
Gtype -> Anti -0.437171
Gtype -> O -0.469909
Air -> Gtype -0.491506
Air -> Supp -0.517679
Supp -> Gtype -0.551144
Technique -> Supp -0.555659
OD -> Air -0.572756
Gtype -> Technique -0.574688
O -> Air -0.585607
Phase -> OD -0.592622
Technique -> pH -0.602711
Supp -> Med -0.656480
Gtype -> Med -0.782031
Substrain -> O -1.224113
Technique -> Gtype -1.370410
Med -> Supp -1.466233
Top positive:
4.763784 O b'lemma:2'
4.403357 O b'lemma:1'
4.351529 O b'lemma:_'
4.235059 Anti b'-2:lemma:antibody'
4.043801 O b'-2:lemma:_'
3.996162 Air b'lemma:anaerobic'
3.806351 Gtype b'lemma:wt'
3.749108 O b'postag:IN'
3.736227 Supp b'lemma:pq'
3.494745 Air b'lemma:Aerobic'
3.463151 Technique b'lemma:ChIP-exo'
3.331237 Technique b'lemma:chipseq'
3.321703 Phase b'lemma:mid-log'
3.250497 Gtype b'lemma:\xce\xb4cra'
3.170468 Supp b'lemma:acetate'
3.124411 O b'lemma:3'
3.062209 O b'lemma:rpob'
3.054282 Phase b'-2:lemma:phase'
3.044351 Gtype b'lemma:\xe2\x88\x86'
2.982673 O b'postag::'
2.975009 O b'-2:lemma:flagtag'
2.948451 Gtype b'-2:lemma:genotype/variation'
2.880650 O b'postag:VBN'
2.875525 O b'lemma:.'
2.875525 O b'postag:.'
2.856618 O b'lemma:-'
2.842211 Technique b'lemma:rna-seq'
2.822332 O b'lemma:b'
2.802827 Gtype b'lemma:type'
2.797366 Gtype b'-1:lemma:\xe2\x88\x86'
2.793829 Supp b'lemma:glucose'
2.734817 Gtype b'-2:lemma:genotype'
2.701420 Supp b'lemma:no3'
2.661946 Air b'lemma:aerobic'
2.652084 Technique b'lemma:chip-seq'
2.649025 O b'lemma:Cra'
2.638351 Air b'postag:RB'
2.590966 O b'-1:lemma:ChIP-exo'
2.579299 Supp b'lemma:Iron'
2.579299 Supp b'-2:lemma:Anaerobic'
2.569436 O b'lemma:a'
2.546577 Med b'lemma:lb'
2.511450 Supp b'-1:lemma:with'
2.503214 Supp b'lemma:nacl'
2.478452 Substrain b'lemma:mg1655'
2.473536 Technique b'+2:lemma:ph5'
2.456529 Supp b'+1:lemma:1'
2.452327 O b'postag:CC'
2.423475 Gtype b'lemma:\xce\xb4fur'
2.368070 Gtype b'lemma:\xce\xb4soxr'
2.360449 Gtype b'lemma:wild-type'
2.352917 Supp b'lemma:nh4cl'
2.349539 O b'+2:lemma:\xc2\xb0c'
2.337254 Med b'lemma:MOPS'
2.321526 Gtype b'lemma:flag-tag'
2.321526 Gtype b'-1:lemma:c-terminal'
2.314837 O b'lemma:CEL'
2.294955 Gtype b'+1:lemma:with'
2.257644 Gtype b'+1:lemma:type'
2.196496 Supp b'+2:lemma:iptg'
2.196469 Supp b'-1:lemma:Cra'
2.175786 Phase b'-1:lemma:mid-log'
2.173685 O b'postag:VBG'
2.163806 pH b'+1:postag:CD'
2.100627 O b'lemma:with'
2.088770 Gversion b'lemma:chip-seq'
2.085539 O b'-1:lemma:tag'
2.069738 O b'lemma:rep2'
2.069674 Supp b'+1:lemma:\xc2\xb5m'
2.060929 O b'lemma:harbor'
2.060390 Temp b'+1:lemma:\xc2\xb0c'
2.022385 Supp b'lemma:nitrate'
1.998316 pH b'lemma:ph5'
1.998316 pH b'+1:lemma:.5'
1.988849 Air b'-1:lemma:ChIP-Seq'
1.977405 Med b'lemma:m63'
1.976213 Temp b'lemma:\xc2\xb0c'
1.971324 Gtype b'lemma:dfnr'
1.969127 O b'+1:lemma:arca-8myc'
1.955303 O b'-1:lemma:0.3'
1.951821 O b'-2:lemma:medium'
1.942893 Supp b'+1:lemma:_'
1.937510 Gtype b'-2:lemma:affyexp'
1.929115 Air b'-2:lemma:IP'
1.905706 Substrain b'+1:lemma:phtpg'
1.898318 Supp b'+1:lemma:2'
1.895488 Technique b'lemma:rnaseq'
1.881491 Supp b'lemma:arginine'
1.871246 Technique b'-2:lemma:Fur'
1.871212 Med b'+2:lemma:b2'
1.868278 Substrain b'-2:lemma:substr'
1.833742 Gtype b'lemma:nsrr'
1.826714 O b'-1:lemma:media'
1.824754 O b'-1:lemma:anaerobic'
1.808509 Supp b'-2:lemma:agent'
1.807657 O b'+1:postag:RB'
1.807328 Gtype b'-1:lemma:rpob'
1.803500 O b'postag:NNS'
1.797656 Technique b'lemma:ChIP-Seq'
1.773838 O b'lemma:chip'
1.773424 Strain b'+1:lemma:substr'
1.773424 Strain b'-2:lemma:str'
1.772977 O b'-1:lemma:glucose'
1.769253 Anti b'+1:lemma:antibody'
1.768929 Gversion b'lemma:.2'
1.768929 Gversion b'-1:lemma:u00096'
1.753884 O b'lemma:\xcf\x8332'
1.753283 O b'-2:lemma:myc'
1.752434 Anti b'+2:lemma:antibody'
1.746191 Gtype b'lemma:pk4854'
1.745489 Technique b'-1:lemma:IP'
1.733914 Supp b'lemma:Leu'
1.733914 Supp b'-2:lemma:Lrp'
1.720315 O b'postag:DT'
1.720167 Strain b'lemma:k-12'
1.714367 Med b'+2:postag:CC'
1.702196 Gtype b'-2:lemma:delta'
1.700861 O b'lemma:argr'
1.699626 O b'+2:postag:JJ'
1.699572 O b'lemma:affyexp'
1.698615 Air b'-1:lemma:-'
1.698323 Air b'lemma:anaeroibc'
1.697509 Temp b'lemma:43'
1.686900 Supp b'lemma:Adenine'
1.667205 O b'lemma:soxs'
1.667205 O b'lemma:soxr'
1.665708 Supp b'lemma:fructose'
1.663126 O b'lemma:ompr'
1.657174 O b'lemma:purr'
1.642276 Technique b'-1:lemma:chip-exo'
1.640609 Gtype b'+1:lemma:ph5'
1.640609 Gtype b'+2:lemma:.5'
1.635130 Temp b'-1:lemma:43'
1.629117 Med b'+1:lemma:0.4'
1.624603 Supp b'-1:postag:CC'
1.623648 O b'+1:lemma:pq'
1.620057 Med b'-1:lemma:in'
1.607167 Technique b'-1:lemma:_'
1.597588 Technique b'-2:lemma:wt'
1.594913 Med b'lemma:minimal'
1.582538 Temp b'-2:lemma:\xcf\x8332'
1.579977 Gversion b'-2:lemma:nc'
1.577928 O b'-1:lemma:\xc2\xb0c'
1.574442 O b'+1:lemma:wt'
1.571857 Supp b'-1:lemma:+'
1.571133 O b'lemma:trpr'
1.568931 O b'lemma:culture'
1.568914 O b'lemma:genotype/variation'
1.567478 Technique b'-1:lemma:input'
1.560894 O b'+1:postag:NNP'
1.559633 O b'-1:lemma:lb'
1.558911 Gtype b'lemma:\xce\xb4ompr'
1.557164 Phase b'+1:lemma:phase'
1.552494 O b'+2:lemma:cra'
1.551712 Supp b'-2:lemma:for'
1.548775 Gtype b'+2:lemma:glucose'
1.548228 Med b'lemma:media'
1.546489 Supp b'lemma:rifampicin'
1.538993 Air b'lemma:anaerobically'
1.538769 Gtype b'lemma:\xce\xb4oxyr'
1.527888 Gversion b'lemma:u00096'
1.527888 Gversion b'+1:lemma:.2'
1.510740 Phase b'lemma:exponential'
1.510740 Phase b'lemma:stationary'
1.504271 O b'+1:lemma:chip-seq'
1.500405 Gversion b'-2:lemma:build'
1.494395 Gtype b'lemma:ptac'
1.491733 O b'-1:lemma:Aerobic'
1.489191 Agit b'lemma:rpm'
1.488153 Technique b'postag:NNP'
1.481440 pH b'lemma:.5'
1.481440 pH b'-1:lemma:ph5'
1.479765 O b'-2:lemma:min'
1.461483 Med b'+2:lemma:b1'
1.458322 O b'lemma:-lrb-'
1.457545 O b'lemma:ml'
1.456515 O b'-1:lemma:type'
1.455521 Phase b'lemma:phase'
1.454471 Temp b'-1:lemma:\xcf\x8332'
1.445071 Gtype b'-2:postag:DT'
1.444366 O b'+1:lemma:od600'
1.441153 Med b'+1:lemma:minimal'
1.435416 O b'-1:lemma:wt'
1.433093 O b'+1:lemma:coli'
1.432963 Gtype b'+1:lemma:_'
1.414930 Gtype b'+1:lemma:flagtag'
1.409771 Med b'lemma:broth'
1.409771 Med b'-1:lemma:L'
1.404102 Gtype b'-1:postag:VBG'
1.402997 O b'+1:lemma:condition'
1.385125 O b'-2:lemma:ChIP-Seq'
1.378975 O b'lemma:Custom'
1.368428 Gtype b'-1:lemma:ptac'
1.367249 Supp b'-2:lemma:condition'
1.365896 Supp b'-1:lemma:_'
1.360344 Gversion b'-2:postag:VB'
1.358613 Gtype b'lemma:arca8myc'
1.358613 Gtype b'-2:lemma:chip-arca'
1.355013 O b'lemma:s'
1.352241 Technique b'-1:lemma:rna-seq'
Top negative:
-0.240864 O b'-1:lemma:n2'
-0.241870 Supp b'+2:postag::'
-0.244948 Supp b'-1:postag:-LRB-'
-0.245788 O b'+1:lemma:_'
-0.250584 O b'+1:lemma:\xc2\xb0c'
-0.251484 Supp b'+1:postag:VBN'
-0.251630 Technique b'-2:postag:NN'
-0.255068 O b'+1:lemma:culture'
-0.255092 O b'lemma:ph'
-0.257956 OD b'+2:postag:NN'
-0.258052 O b'+1:lemma:gade'
-0.259067 Gtype b'-2:postag:CD'
-0.259245 O b'lemma:250'
-0.260012 Phase b'+1:postag:NN'
-0.261463 O b'-1:lemma:sodium'
-0.261463 O b'+2:lemma:1/100'
-0.261641 O b'-1:lemma:1m'
-0.261641 O b'+2:lemma:7.6'
-0.267912 Strain b'postag:NN'
-0.268585 O b'-2:lemma:aerobically'
-0.270821 O b'lemma:0.2'
-0.271046 O b'-2:lemma:2'
-0.273281 Temp b'-1:lemma:\xc2\xb0c'
-0.273389 O b'+1:lemma:mg1655'
-0.275465 Med b'-1:postag:CD'
-0.279720 Supp b'+1:lemma:rifampicin'
-0.282890 O b'+1:postag:IN'
-0.290800 Supp b'+2:lemma:acetate'
-0.293273 O b'-2:lemma:mg1655'
-0.294116 Anti b'+2:postag:JJ'
-0.299017 Supp b'lemma:1'
-0.301190 O b'-1:postag:IN'
-0.309209 Supp b'+1:postag:-RRB-'
-0.311352 Supp b'+2:postag:CC'
-0.313923 O b'+1:postag:VBG'
-0.315176 Supp b'-1:lemma:dpd'
-0.321987 O b'+1:lemma:gadw'
-0.325650 Med b'-1:postag:NN'
-0.327648 O b'lemma:methanol'
-0.327648 O b'-2:lemma:dissolve'
-0.328318 O b'-1:lemma:0.2'
-0.334852 O b'lemma:fecl2'
-0.339654 O b'lemma:anaerobic'
-0.341230 O b'-1:lemma:chip-exo'
-0.353401 O b'-1:lemma:cra'
-0.354424 O b'-2:lemma:anaerobically'
-0.355426 O b'-2:lemma:rpob'
-0.355678 O b'-1:lemma:contain'
-0.361362 O b'+1:lemma:g/l'
-0.361781 O b'lemma:dissolve'
-0.361781 O b'+2:lemma:methanol'
-0.366638 O b'lemma:lb'
-0.367583 Supp b'+1:lemma:fructose'
-0.369374 Med b'+1:postag:NN'
-0.369510 O b'lemma:m63'
-0.370064 O b'-2:lemma:phase'
-0.370439 O b'+1:lemma:minimal'
-0.370982 O b'-2:lemma:pahse'
-0.371136 Supp b'-2:lemma:grow'
-0.375991 Vess b'postag:NN'
-0.378096 O b'+1:lemma:rep2'
-0.378255 O b'+2:lemma:-rrb-'
-0.380278 O b'+2:lemma:at'
-0.384210 O b'-1:lemma:minimal'
-0.388239 O b'-2:lemma:glucose'
-0.391106 Air b'-1:postag:JJ'
-0.391908 O b'-1:lemma:until'
-0.392584 Supp b'+2:lemma:-rrb-'
-0.394595 O b'+1:lemma:Aerobic'
-0.396109 O b'-1:lemma:final'
-0.396858 Med b'+1:postag:IN'
-0.398638 O b'-1:lemma:iptg'
-0.405984 O b'-2:lemma:mm'
-0.412751 O b'-1:lemma:37'
-0.423858 O b'+1:lemma:dissolve'
-0.428909 O b'-2:lemma:supplement'
-0.431989 O b'+1:lemma:m'
-0.436777 Supp b'+2:postag:-RRB-'
-0.437255 Supp b'-1:postag:VBN'
-0.440236 O b'+2:lemma:tag'
-0.446461 Supp b'+1:postag:NNS'
-0.448337 O b'lemma:nitrogen'
-0.452881 Supp b'postag:CC'
-0.454287 Supp b'+2:lemma:glucose'
-0.459760 O b'lemma:minimal'
-0.470804 O b'-2:lemma:nh4cl'
-0.491402 O b'postag:RB'
-0.494015 O b'lemma:37'
-0.499646 O b'-1:lemma:g/l'
-0.502121 O b'+2:lemma:a'
-0.507239 Supp b'+1:lemma:acetate'
-0.509993 O b'-1:lemma:dissolve'
-0.509993 O b'+1:lemma:methanol'
-0.518444 Supp b'-1:postag:NNP'
-0.522170 O b'-1:lemma:grow'
-0.523412 O b'-2:lemma:a'
-0.531453 O b'+1:lemma:1m'
-0.531453 O b'-2:lemma:vol'
-0.534602 O b'+2:lemma:250'
-0.538057 Gtype b'-2:lemma:\xe2\x88\x86'
-0.549372 O b'+2:lemma:then'
-0.549638 O b'+2:lemma:genome'
-0.550134 Supp b'-2:lemma:treat'
-0.556977 O b'-1:lemma:fresh'
-0.558288 O b'-1:lemma:dfnr'
-0.565708 O b'+1:lemma:supplement'
-0.569022 O b'lemma:fructose'
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-0.639334 O b'-1:lemma:mm'
-0.646392 O b'-1:lemma:\xe2\x88\x86'
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-0.661116 O b'lemma:2h'
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-0.688555 Supp b'+1:lemma:-lrb-'
-0.690175 Supp b'-2:postag:JJ'
-0.690245 Phase b'postag:JJ'
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-0.708967 Anti b'+1:lemma:anti-fur'
-0.728829 O b'+1:lemma:until'
-0.747693 O b'-1:lemma:ml'
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-0.849054 O b'-2:lemma:media'
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-0.867470 O b'-2:lemma:1/100'
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-0.919858 O b'-1:lemma:1'
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-0.934298 O b'lemma:mid-log'
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-0.976905 O b'+2:lemma:fnr'
-0.983443 Anti b'+2:lemma:polyclonal'
-0.983730 O b'lemma:nitrate'
-0.994076 Supp b'+2:lemma:fructose'
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-0.999246 O b'-1:lemma:ph'
-1.004751 OD b'+1:postag:NN'
-1.006120 O b'+1:lemma:+'
-1.012830 O b'-2:lemma:0.3'
-1.019854 O b'+2:lemma:b'
-1.020397 O b'+1:lemma:2.0'
-1.043510 O b'-1:lemma:sample'
-1.049774 OD b'+2:lemma:aerobically'
-1.060960 O b'lemma:30'
-1.076454 O b'lemma:rifampicin'
-1.098762 Supp b'+2:postag:CD'
-1.112282 O b'lemma:aerobic'
-1.121896 Gtype b'+2:lemma:cra'
-1.139537 Supp b'+2:lemma:2'
-1.152551 Supp b'+2:lemma:1'
-1.156894 O b'lemma:media'
-1.166267 O b'+1:lemma:at'
-1.166551 O b'-1:lemma:nsrr'
-1.176235 O b'+1:lemma:in'
-1.183711 O b'+2:lemma:rifampicin'
-1.212779 O b'lemma:wt'
-1.245458 O b'-2:lemma:rifampicin'
-1.334770 O b'lemma:\xce\xb4fur'
-1.335529 O b'-1:lemma:IP'
-1.335617 Anti b'postag:NNP'
-1.392108 O b'lemma:0.3'
-1.428060 Gtype b'postag:VBG'
-1.462629 O b'-1:postag:VBG'
-1.559454 Supp b'postag:JJ'
-1.728116 O b'+1:lemma:1'
-2.237261 O b'+1:lemma:2'
-2.735096 O b'-1:lemma::'
-3.093805 O b'-1:lemma:_'