Carlos-Francisco Méndez-Cruz / automatic-extraction-growth-conditions

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annot-input_bg_outputII.txt 312 KB
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GSE100233	antibody : Flag	Gtype
GSE100233	ChIP-Seq 	Gtype
GSE100233	induce the expression of flag-parB -LRB- WT	Gtype
GSE100233	developmental stage : mixed population , exponential phase	Gtype
GSE100233	R . The sequence in between the summit of upper strand profile and that of the lower strand profile defines the minimal parS	Gtype
GSE100233	genotype : AB1157 ybbD : : parS scrambled site 3 pUTC18 : : parB -LRB- G101S -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS scrambled site 3 pUTC18 : : parB -LRB- WT -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 1 pUTC18 : : parB -LRB- WT -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 2 pUTC18 : : parB -LRB- G101S -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 2 pUTC18 : : parB -LRB- WT -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 3 pUTC18 : : parB -LRB- G101S -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 3 pUTC18 : : parB -LRB- WT -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 4 pUTC18 : : parB -LRB- G101S -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 4 pUTC18 : : parB -LRB- WT -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 5 pUTC18 : : parB -LRB- G101S -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 5 pUTC18 : : parB -LRB- WT -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 6 pUTC18 : : parB -LRB- WT -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 7 pUTC18 : : parB -LRB- G101S -RRB-	Gtype
GSE100233	genotype : AB1157 ybbD : : parS site 7 pUTC18 : : parB -LRB- WT -RRB-	Gtype
GSE100233	None 	O
GSE100233	tab-delimited text file of nucleotide-resolution coverage from RNA-seq data -LRB- column 1 : genome ID , column 2 : nucleotide position , column 3 : coverage -RRB-	Gtype
GSE100233	E. coli CMA540 -LRB- MG1693 ∆ hfq : : cat -RRB-	Gtype
GSE100373	U00096 .3	Gtype
GSE100373	growth phase : Exponential	Gtype
GSE100373	Hfq mut exp mRNA	Gtype
GSE100373	Hfq mut exp RPF	Gtype
GSE100373	RNA-Seq 	O
GSE100373	strain : CMA540 -LRB- MG1693 delta _ hfq : : cat -RRB-	Gtype
GSE100373	strain : MG1693	Gtype
GSE100373	Read counts were normalized by the length of the unique CDS per kilobase -LRB- RPKM -RRB- and the total mapped reads per million -LRB- RPM -RRB-	Gtype
GSE100373	WT exp mRNA	Gtype
GSE100373	WT exp RPF	Gtype
GSE100373	M63 -LRB- mM63 : pH 7.0 , 62 mM K2HPO4 , 39 mM KH2PO4 , 15 mM ammonium sulfate , 1.8 µM FeSO4-7H2O , 15 µM thiamine hydrochloride , 0.2 mM MgSO4-7H2O and 22 mM glucose	Gtype
GSE101471	cell type : Ancestral I - cells	Gtype
GSE101471	cell type : Ancestral L	Gtype
GSE101471	cell type	Gtype
GSE101471	cell type	Gtype
GSE101471	cell type : Original prototroph DH1 cells	Gtype
GSE101471	culture type : coculture	Gtype
GSE101471	culture type : monoculture	Gtype
GSE101471	DH1-log 	Gtype
GSE101471	DH1-log-tr 	Gtype
GSE101471	genotype 	O
GSE101471	growth type : amino acid starvation	Gtype
GSE101471	growth type : log phase	Gtype
GSE101471	IA-co1 	Gtype
GSE101471	IA-co2 	Gtype
GSE101471	IA-log 	Gtype
GSE101471	IA-starve 	Gtype
GSE101471	IE-co1 	Gtype
GSE101471	IE-co2 	Gtype
GSE101471	IE-log 	Gtype
GSE101471	IE-starve 	Gtype
GSE101471	LA-co1 	Gtype
GSE101471	LA-co2 	Gtype
GSE101471	LA-log 	Gtype
GSE101471	LA-log-tr 	Gtype
GSE101471	LA-starve 	Gtype
GSE101471	LE-co1 	Gtype
GSE101471	LE-co2 	Gtype
GSE101471	LE-log 	Gtype
GSE101471	LE-log-tr 	Gtype
GSE101471	LE-starve 	Gtype
GSE101471	substrain : DH1	Gtype
GSE101471	cold phenol-ethanol solution -LRB- 0.1g-phenol	Gtype
GSE101471	antibody : Anti-Dps antibodies	Gtype
GSE101471	antibody : rabbit pre-immune IgG	Gtype
GSE101471	Bacterial cells	Med
GSE101471	ChIP-Seq 	O
GSE101471	100 mM Tris-HCl -LRB- pH 8.6 -RRB- ; 100 mM NaCl ; 5 mM EDTA ; 0,2 % NaN3 , 5 % Triton-X-100	Gtype
GSE101471	Exp 1 _ control	Gtype
GSE101471	Exp 2 _ control	Gtype
GSE101471	E. coli K-12 MG1655 -LRB- U00096 .3 -RRB-	Gtype
GSE101471	growth stage : log-phase	Gtype
GSE101471	quantifies the scaling factor on the basis	Gtype
GSE101471	sequencing mode : 50 nt single-end read protocol	Gtype
GSE101471	sequencing mode : paired-end 2 * 150 nt protocol	Gtype
GSE101471	To apply the second approach variable	Gtype
GSE102091	od : 0.8	Gtype
GSE102091	Sample 1	Temp
GSE102091	Sample 2	Temp
GSE102091	strain : BW25113	Gtype
GSE102091	untreated 	Anti
GSE102091	Adaptive threshold -LRB- quantitation method -RRB- uses the parameters of the spot	Gtype
GSE102091	E. coli K12 -LRB- W3110 -RRB- , fed-batch	Gtype
GSE102091	RviaT1 _ SR1	Gtype
GSE102322	RviaT1 _ SR2	Gtype
GSE102322	RviaT1 _ SR3	Gtype
GSE102322	RviaT2 _ SR1	Gtype
GSE102322	RviaT2 _ SR2	Gtype
GSE102322	RviaT2 _ SR3	Gtype
GSE102322	RviaT3 _ SR1	Gtype
GSE102322	RviaT3 _ SR2	Gtype
GSE102322	RviaT3 _ SR3	Gtype
GSE102322	RviaT4 _ SR1	Gtype
GSE102322	RviaT4 _ SR2	Gtype
GSE102322	RviaT4 _ SR3	Gtype
GSE102322	RviaT5 _ SR2	Gtype
GSE102322	RviaT5 _ SR3	Gtype
GSE102322	RviaT6 _ SR2	Gtype
GSE10307	RviaT6 _ SR3	Gtype
GSE10307	RviaT7 _ SR2	Gtype
GSE10307	RviaT7 _ SR3	Gtype
GSE10307	RviaT8 _ SR2	Gtype
GSE10307	RviaT8 _ SR3	Gtype
GSE10307	T1viaR _ SR1	Gtype
GSE10307	T1viaR _ SR2	Gtype
GSE10307	T1viaR _ SR3	Gtype
GSE10307	T2viaR _ SR1	Gtype
GSE10307	T2viaR _ SR2	Gtype
GSE10307	T2viaR _ SR3	Gtype
GSE10307	T3viaR _ SR1	Gtype
GSE10307	T3viaR _ SR2	Gtype
GSE10307	T3viaR _ SR3	Gtype
GSE10307	T4viaR _ SR1	Gtype
GSE10307	T4viaR _ SR2	Gtype
GSE10307	T4viaR _ SR3	Gtype
GSE10307	T5viaR _ SR2	Gtype
GSE10307	T5viaR _ SR3	Gtype
GSE10307	T6viaR _ SR2	Gtype
GSE10307	T6viaR _ SR3	Gtype
GSE10307	T7viaR _ SR2	Gtype
GSE10307	T7viaR _ SR3	Gtype
GSE10307	T8viaR _ SR2	Gtype
GSE10307	T8viaR _ SR3	Gtype
GSE10307	E. coli , unlimited growth -LRB- batch -RRB-	Gtype
GSE10307	The batch medium -LRB- batch volume VR ,0 = 17 l -RRB- consisted of 8.8 g l − 1 glucose • H2O , 2.0 g l − 1 Na2SO4 • 10H2O , 2.68 g l − 1 -LRB- NH4 -RRB- 2SO4 , 1.0 g l − 1 NH4Cl , 14.6 g l − 1 K2HPO4 , 4.02 g l − 1 NaH2PO4 • 2H2O , 0.01 g l − 1 thiamine HCl ; 0.3 mM CaCl2 • 2H2O , 2mM MgSO4 • 7H2O ; 3 ml l − 1 of trace element solution -LRB- TES : 16.7 g l − 1 FeCl3 • 6H2O , 20.1 g l − 1	Gtype
GSE10307	Escherichia coli O157 TUV93-0 MEM-HEPES + 20uM ME0052 -LRB- in DMSO -RRB-	Gtype
GSE10307	Escherichia coli O157 TUV93-0 MEM-HEPES + 20uM ME0053 -LRB- in DMSO -RRB-	Gtype
GSE10307	Escherichia coli O157 TUV93-0 MEM-HEPES + 20uM ME0054 -LRB- in DMSO -RRB-	Gtype
GSE10307	Escherichia coli O157 TUV93-0 MEM-HEPES + 20uM ME0055 -LRB- in DMSO -RRB-	Gtype
GSE10307	Escherichia coli O157 TUV93-0 was grown in the presence of 20uM ME0052	Gtype
GSE10307	Escherichia coli O157 TUV93-0 was grown in the presence of 20uM ME0053	Gtype
GSE10307	Escherichia coli O157 TUV93-0 was grown in the presence of 20uM ME0054	Gtype
GSE10307	Escherichia coli O157 TUV93-0 was grown in the presence of 20uM ME0055	Gtype
GSE10307	inhibitor : 20uM ME0052	Gtype
GSE10307	inhibitor : 20uM ME0053	Gtype
GSE10307	inhibitor : 20uM ME0054	Gtype
GSE10307	inhibitor : 20uM ME0055	Gtype
GSE10307	LOWESS normalised data that represents the average of the three replicate experiments	Gtype
GSE10307	ME0052 	Gtype
GSE10307	ME0053 	Gtype
GSE10307	ME0054 	Gtype
GSE10307	ME0055 	Gtype
GSE10307	no inhibitor : equivalent volume of DMSO added	Gtype
GSE10307	od : 0.7	Gtype
GSE10307	strain : O157 : H7 EHEC TUV93-0	Gtype
GSE10307	DMS-seq , the position of each alignment was the position immediately 5 ' of the 5 ' end of the read .	Gtype
GSE10319	0.1 mM CspA protein	Gtype
GSE10319	37 °C	Temp
GSE10319	DMS-seq 8 hr after shift to 10 °C in ∆ cspABEG cells	Gtype
GSE10319	DMS-seq 8 hr after shift to 10 °C in ∆ cspBG cells	Gtype
GSE103421	NC000913 .2	Gtype
GSE103421	genotype 	Gtype
GSE103421	MG1655 	Gtype
GSE103421	MG1655 ∆ cspABCEG	Gtype
GSE103421	MG1655 ∆ cspABEG	Gtype
GSE103421	MG1655 ∆ cspBG	Gtype
GSE103421	MG1655 ∆ rnr	Gtype
GSE103421	molecule subtype : DMS-modified mRNA	Gtype
GSE103421	molecule subtype : mRNA	Gtype
GSE103421	molecule subtype : Ribosome protected mRNA	Gtype
GSE103421	molecule subtype : Total RNA	Gtype
GSE103421	mRNA-seq 8 hr after shift to 10 °C in ∆ cspABEG cells	Gtype
GSE103421	OTHER 	O
GSE103421	RNA-Seq 	O
GSE103421	strain background : MG1655	Gtype
GSE103421	strain : MG1655	Gtype
GSE103421	first column containing chromosome positions -LRB- relative to transcription start site -LRB- 1 -RRB- of cspA -RRB- and second column containing the mutation rate .	Gtype
GSE103421	temperature : 10 °C	Gtype
GSE103421	temperature : 37 °C	Gtype
GSE103421	Total RNA-seq 4 hr after shift to 10 °C in ∆ rnr cells	Gtype
GSE103421	Total RNA-seq	Technique
GSE103421	Total RNA-seq 8 hr after shift to 10 °C in ∆ rnr cells	Gtype
GSE103421	Total RNA-seq 8	Technique
GSE103421	Total RNA-seq after rifampicin treatment -- 4 hr after shift to 10 °C in ∆ rnr cells	Gtype
GSE103421	Total RNA-seq	Technique
GSE103421	Total RNA-seq before rifampicin treatment -- 2 hr after shift to 10 °C in ∆ rnr cells	Gtype
GSE103421	Total RNA-seq before rifampicin treatment -- 2 hr after shift to 10 °C in WT cells	Gtype
GSE103421	treatment : 0.025 mM CspA protein	Gtype
GSE103421	treatment : 0.05 mM CspA protein	Gtype
GSE103421	treatment : 0.1 mM CspA protein	Gtype
GSE103421	treatment : After 10 mg	Gtype
GSE103421	treatment : Before rifampicin treatment	Gtype
GSE103421	37 C	Gtype
GSE103421	Drug : bicyclomycin	Gtype
GSE103421	Drug : none	Gtype
GSE103421	Extraction : Rneasy	Gtype
GSE103421	Growth phase : exponential	Gtype
GSE103421	OD600 = 0.3	Gtype
GSE103421	Isolate : EDL933	Gtype
GSE103421	Isolate : MDS42	Gtype
GSE103421	Isolate : MG1655	Gtype
GSE103421	K12 strain MG1655 , 100 mcg	Gtype
GSE103421	K12 strain MG1655 , 10 mcg	Gtype
GSE103421	K12 strain MG1655 , 25 mcg	Gtype
GSE103421	K12 strain MG1655 , control sample , exponential phase	Gtype
GSE103421	O157 : H7 strain EDL933 , 100 mcg	Gtype
GSE10345	O157 : H7 strain EDL933 , control sample , exponential phase	Gtype
GSE10345	Reduced genome strain MDS42 , 100 mcg	Gtype
GSE10345	Reduced genome strain MDS42 , control sample , exponential phase	Gtype
GSE10345	Reduced genome strain MDS42 , deletion of nusA gene , OD600 = 0.3	Gtype
GSE10345	K-12 reduced genome	Gtype
GSE10345	Strain : O157 : H7	Gtype
GSE10345	Bacterial cells	Med
GSE10345	bcl2fastq2 v2 .15.0 -LRB- Demultiplexing -RRB- , Fastqc 0.11.5 -LRB- read quality -RRB- , Cutadapt-1.9.1 -LRB- adaptor trimming -RRB-	Gtype
GSE10345	NC000913 .2 MG1655	Gtype
GSE10345	genotype : -LCB- delta -RCB- nusG	Gtype
GSE10345	genotype : -LCB- delta -RCB- rho	Gtype
GSE10345	genotype : wild type	Gtype
GSE10345	∆ nusG UvsW _ replicate1	Gtype
GSE10345	∆ nusG UvsW _ replicate2	Gtype
GSE10345	∆ nusG UvsW _ replicate3	Gtype
GSE10345	∆ rho UvsW _ replicate1	Gtype
GSE10345	∆ rho UvsW _ replicate2	Gtype
GSE10345	∆ rho UvsW _ replicate3	Gtype
GSE10345	ssRNA-seq 	Gtype
GSE10345	Strand-specific RNA-Seq	Technique
GSE10345	the aid of the di-tagged cDNA strategy -LRB- ScriptSeq -RRB-	Gtype
GSE10345	substrain : GJ13507	Gtype
GSE10345	substrain : GJ13519	Gtype
GSE10345	substrain : GJ13531	Gtype
GSE10345	substrain : GJ13533	Gtype
GSE10345	content : The text file contains sense and antisense raw	Gtype
GSE10345	their respective shelter plasmid-carrying derivatives GJ13531	Gtype
GSE10345	WT glucose _ replicate1	Gtype
GSE10345	WT glucose _ replicate2	Gtype
GSE10345	WT glucose _ replicate3	Gtype
GSE10345	WT _ glycerol _ replicate1	Gtype
GSE10345	WT _ glycerol _ replicate2	Gtype
GSE10345	WT _ glycerol _ replicate3	Gtype
GSE10345	WT UvsW _ replicate1	Gtype
GSE10345	WT UvsW _ replicate2	Gtype
GSE10345	WT UvsW _ replicate3	Gtype
GSE103937	cells 	Gtype
GSE103937	crpfis.rep1.ee 	O
GSE103937	crpfis.rep1.me 	O
GSE103937	crpfis.rep2.ee 	O
GSE103937	crpfis.rep2.me 	O
GSE103937	crp.rep1.ee 	O
GSE103937	crp.rep1.me 	O
GSE103937	crp.rep2.ee 	O
GSE103937	crp.rep2.me 	O
GSE103937	cya.rep1.ee 	O
GSE103937	cya.rep1.me 	O
GSE103937	cya.rep2.ee 	O
GSE103937	cya.rep2.me 	O
GSE103937	fis.rep1.ee 	O
GSE103937	fis.rep1.me 	O
GSE103937	fis.rep2.ee 	O
GSE103937	fis.rep2.me 	O
GSE103937	Escherichia coli -LRB- NC000913 .2 -RRB-	Gtype
GSE103937	genotype : crpfis mutant background	Gtype
GSE103937	genotype : crp mutant background	Gtype
GSE103937	genotype : cya mutant background	Gtype
GSE103937	genotype : fis mutant background	Gtype
GSE103937	genotype : wildtype	Gtype
GSE103937	growth phase : Early exponential	Gtype
GSE103937	Mid exponential	Gtype
GSE103937	NEXTflexRapid Directional RNA-Seq library kit	Gtype
GSE103937	RNA-Seq 	O
GSE103937	srain : K12 MG1655	Gtype
GSE103937	srain : K12 MG1656	Gtype
GSE103937	srain : K12 MG1657	Gtype
GSE103937	srain : K12 MG1658	Gtype
GSE103937	srain : K12 MG1659	Gtype
GSE103937	srain : K12 MG1660	Gtype
GSE103937	srain : K12 MG1661	Gtype
GSE103937	srain : K12 MG1662	Gtype
GSE103937	srain : K12 MG1663	Gtype
GSE103937	srain : K12 MG1664	Gtype
GSE103937	srain : K12 MG1665	Gtype
GSE103937	srain : K12 MG1666	Gtype
GSE103937	srain : K12 MG1667	Gtype
GSE103937	srain : K12 MG1668	Gtype
GSE103937	srain : K12 MG1669	Gtype
GSE103937	srain : K12 MG1670	Gtype
GSE103937	srain : K12 MG1671	Gtype
GSE103937	srain : K12 MG1672	Gtype
GSE103937	srain : K12 MG1673	Gtype
GSE103937	srain : K12 MG1674	Gtype
GSE104504	wt.rep1.ee 	O
GSE104504	wt.rep1.me 	O
GSE104504	wt.rep2.ee 	O
GSE104504	wt.rep2.me 	O
GSE104504	E. coli 042 WT	Gtype
GSE104504	meta-feature leve . Paired-end : no . Strand specific : yes	Gtype
GSE104504	NCBI reference sequence -LRB- NC _ 017626.1 -RRB-	Gtype
GSE104504	genotype : mutant hhahha2	Gtype
GSE104504	genotype : mutant hhs	Gtype
GSE104504	genotype : mutant hns2	Gtype
GSE104504	genotype : mutant hnshns2	Gtype
GSE104504	genotype : wild type	Gtype
GSE104504	Illumina sequencing instruments generate per-cycle BCL base call files as primary sequencing output in bcl2 format . Conversion of the bcl2 file to gzipped fastq	Gtype
GSE104504	LB medium	Med
GSE104504	RNA-Seq 	O
GSE104504	∆ ompR pH 5.6 A	Gtype
GSE104504	∆ ompR pH 5.6 B	Gtype
GSE104504	∆ ompR pH 5.6 C	Gtype
GSE104504	∆ ompR pH 7.2 +15 % sucrose A	Gtype
GSE104504	∆ ompR pH 7.2 +15 % sucrose B	Gtype
GSE104504	WT pH 5.6 A	Gtype
GSE104504	WT pH 5.6 C	Gtype
GSE104504	WT pH 7.2 +15 % sucrose A	Gtype
GSE104504	WT pH 7.2 +15 % sucrose B	Gtype
GSE104504	WT pH 7.2 +15 % sucrose C	Gtype
GSE104504	genotype : Wildtype	Gtype
GSE104504	∆ ompR pH 5.6 A	Gtype
GSE104504	∆ ompR pH 5.6 B	Gtype
GSE104504	∆ ompR pH 5.6 C	Gtype
GSE104504	∆ ompR pH 7.2 +15 % sucrose A	Gtype
GSE104504	∆ ompR pH 7.2 +15 % sucrose B	Gtype
GSE104504	ph : 5.6	Gtype
GSE104504	ph : 7.2	Gtype
GSE104504	strain : MG1655	Gtype
GSE104504	sucrose status : no sucrose	Gtype
GSE104504	sucrose status : with 15 % sucrose	Gtype
GSE104504	Supplementary files contain the following : Raw Signal Values : The term `` raw '' signal values refer to the linear data	Gtype
GSE104504	WT pH 5.6 A	Gtype
GSE104504	WT pH 5.6 B	Gtype
GSE104504	WT pH 5.6 C	Gtype
GSE104504	WT pH 7.2 +15 % sucrose A	Gtype
GSE104504	WT pH 7.2 +15 % sucrose B	Gtype
GSE104504	WT pH 7.2 +15 % sucrose C	Gtype
GSE104504	to the first strand synthesis mix 5 μl of Second strand synthesis buffer -LSB- Cat No B6117S -RSB- , 3 μl of dNTPs -LSB- Cat No N0446S -RSB- , 2μl of RNAseH -LSB- Cat No M0297L -RSB-	Gtype
GSE104504	MiniElute PCR purification kit -LSB- Cat No 28004 -RSB- with final elution in 10 μl of DEPC-treated free water	Gtype
GSE105133	Bacterial cells	Med
GSE106628	plasmid : None	Gtype
GSE106628	plasmid : PD864	Gtype
GSE106628	plasmid : PLYS	Gtype
GSE106628	plasmid : PSB1C3	Gtype
GSE106628	RNA-Seq 	O
GSE106628	strain : DH10BGFP	Gtype
GSE106628	strain : MG1655GFP	Gtype
GSE106628	synthetic circuit : H3	Gtype
GSE106628	synthetic circuit : LACZ	Gtype
GSE106628	synthetic circuit : Lux	Gtype
GSE106628	synthetic circuit : M1	Gtype
GSE106628	synthetic circuit : None	Gtype
GSE106628	treatment : 15 min	Gtype
GSE106628	3C-seq : 5 µg of a 3C library was suspended in water -LRB- final volume 130 µL	Gtype
GSE106628	exponential phase 37 °C	Gtype
GSE107093	plasmid pGBM2-5xmatS in exponential phase 30 °C	Gtype
GSE107093	plasmid pGBM2 in exponential phase 30 °C	Gtype
GSE107093	plasmid pGBM2-5xmatS in exponential phase 30 °C	Gtype
GSE107093	plasmid pGBM2 in exponential phase 30 °C	Gtype
GSE107093	3C-seq of E. coli wt cells in exponential phase 22 °C	Gtype
GSE107093	3C-seq of E. coli wt cells in exponential phase 30 °C	Gtype
GSE107093	3C-seq of E. coli wt cells in exponential phase 37 °C	Gtype
GSE107093	3C-seq of E. coli wt cells in stationary phase 30 °C -LRB- 30h -RRB-	Gtype
GSE107093	plasmid pGBM2-5xmatS in exponential phase 30 °C	Gtype
GSE107093	plasmid pGBM2 in exponential phase 30 °C	Gtype
GSE107093	Assignment to restriction fragment	Gtype
GSE107093	E. coli MG1655 GenBank : U00096 .2 , total length : 4639675 bp	Gtype
GSE107093	rfb-50 rph-1 -LSB- delta -RSB- fis : : frt-kan-frt	Gtype
GSE107093	rfb-50 rph-1 -LSB- delta -RSB- hns : : frt	Gtype
GSE107093	rfb-50 rph-1 -LSB- delta -RSB- matP : : frt-cam-frt	Gtype
GSE107093	rfb-50 rph-1 -LSB- delta -RSB- mukB : : frt - kan	Gtype
GSE107093	rfb-50 rph-1 -LSB- delta -RSB- zapB : : frt-kan-frt	Gtype
GSE107093	rfb-50 rph-1 matP -LSB- delta -RSB- C20 : : frt-cam-frt	Gtype
GSE107093	rfb-50 rph-1 phi80 + -LSB- delta -RSB- hupA : : frt - kan - frt -LSB- delta -RSB- hupB : : frt-cam-frt	Gtype
GSE107093	rfb-50 rph-1phi80 + -LSB- delta -RSB- mukB : : frt - apra -LSB- delta -RSB- matP : : frt-cam-frt	Gtype
GSE107093	growth condition : LB	Gtype
GSE107093	30 °C	Supp
GSE107093	growth condition : LB	Gtype
GSE107093	37 °C	Temp
GSE107093	30 °C	Supp
GSE107093	Iterative alignment , Min-leght = 20 , step = 5 , bowtie2 -- very-sensitive	Gtype
GSE107093	Library strategy : 3C-seq	Gtype
GSE107301	OTHER 	Gtype
GSE107301	RNA-Seq 	O
GSE107301	RNA-seq of E. coli wt cells in stationary phase 30 °C -LRB- 30h -RRB-	Gtype
GSE107301	RNA-seq of E. coli wt cells in stationary phase 30 °C -LRB- 30h -RRB- - Replicate 1	O
GSE107301	content : rna-seq : genomic position -LRB- middle of the 5kb-bin -RRB- to each count . 3C seq : contact	Gtype
GSE107301	Bacterial liquid culture	Gtype
GSE107301	ercc spike-in : No	Gtype
GSE107301	Prior to extraction	Gtype
GSE107301	NCBI reference sequence : NC _ 000913.2	Gtype
GSE107301	plasmid : pBAD30-empty	Gtype
GSE107301	plasmid : pBAD30-MazF	Gtype
GSE107301	ribozero : No	Gtype
GSE107301	ribozero : Yes	Gtype
GSE107301	RNA-Seq 	Gtype
GSE107301	strain : MG1655 delta _ mazF	Gtype
GSE107301	30 minutes	Supp
GSE107301	time induction : 5 minutes	Gtype
GSE107301	time induction : 60 minutes	Gtype
GSE107301	Bacteria 	Gtype
GSE107301	to the probe signal value divided by the local background intensity	Gtype
GSE107301	gut origin : Human colon	Gtype
GSE107301	the acrB locus -LRB- marR1 , acrB : : kan -RRB- resulting in a multidrug efflux negative phenotype .	Gtype
GSE107301	E. coli AcrB Multidrug Efflux Mutant	Gtype
GSE107301	HNCE4 is an isogenic mutant derived from drug sensitive AG102MB -LRB- marR1 , AcrB : : kan -RRB- . It contains an additional mutation at the emrAB locus -LRB- marR1 , acrB : : kan , emrAB : : cat -RRB- resulting in a multidrug efflux negative phenotype .	Gtype
GSE107301	is drug hyper-resistant due to a mutation in marR -LRB- marR1 -RRB- which increases expression of MarA , a global regulator , which in turn results in overexpression of the AcrAB-TolC multidrug efflux system .	Gtype
GSE107301	NEB 's protocol from the NEBNext ® ChIP-Seq library preparation kit .	Gtype
GSE107301	background strain : BW27784	Gtype
GSE107327	Bacterial Cell Lysates	Gtype
GSE107327	ChIP-Seq 	O
GSE107327	DL4184 biological repeat 1 RecA ChIP	Gtype
GSE107327	DL4201 biological repeat 1 RecA ChIP	Gtype
GSE107327	DL5699 biological repeat 1 RecA ChIP	Gtype
GSE107327	DL5699 biological repeat 2 RecA ChIP	Gtype
GSE107327	DL6204 biological repeat 1 RecA ChIP	Gtype
GSE107327	DL6204 biological repeat 2 RecA ChIP	Gtype
GSE107327	DL4201 _ in _ lab _ reference _ genome -LRB- available on series record -RRB-	Gtype
GSE107327	genotype : BW27784 delta _ recD lacZ : : XXX mhpR : : XXX proA : : ISceIcs tsx : : ISceIcs PBAD-sbcDC lacZ + cynX : : GmR lacIq lacZX	Gtype
GSE107327	genotype : BW27784 delta _ recD lacZ : : XXX mhpR : : XXX proA : : ISceIcs tsx : : ISceIcs PBAD-sbcDC lacZ : : pal246 cynX : : GmR lacIq lacZX	Gtype
GSE107327	genotype : BW27784 lacZ : : XXX mhpR : : XXX proA : : ISceIcs tsx : : ISceIcs PBAD-sbcDC lacZ + cynX : : GmR lacIq lacZX	Gtype
GSE107327	genotype : BW27784 lacZ : : XXX mhpR : : XXX proA : : ISceIcs tsx : : ISceIcs PBAD-sbcDC lacZ : : pal246 cynX : : GmR lacIq lacZX	Gtype
GSE107327	strain : DL4184	Gtype
GSE107327	strain : DL4201	Gtype
GSE107327	strain : DL5966	Gtype
GSE107327	strain : DL6204	Gtype
GSE107327	induced DNA double strand break	Gtype
GSE107327	is drug hyper-resistant due to a mutation in marR -LRB- marR1 -RRB- which increases expression of MarA , a global regulator , which in turn results in overexpression of the AcrAB-TolC multidrug efflux system .	Gtype
GSE107327	Cholic Acid Treatment	Gtype
GSE107327	DMSO-Only Treatment	Gtype
GSE107327	37C in the presence of dimethyl sulfoxide -LRB- DMSO -RRB-	Gtype
GSE107327	37C in the presence of dimethyl sulfoxide -LRB- DMSO -RRB-	Gtype
GSE107550	37C in the presence of dimethyl sulfoxide -LRB- DMSO -RRB-	Gtype
GSE107550	37C in the presence of dimethyl sulfoxide -LRB- DMSO -RRB-	Gtype
GSE107550	37C in the presence of dimethyl sulfoxide -LRB- DMSO -RRB-	Gtype
GSE107550	Estradiol Treatment	Phase
GSE107550	Hydrocortisone Treatment	Phase
GSE107550	Progesterone Treatment	Phase
GSE10757	e154 -LRB- 2007 -RRB- and purified by phenol	Anti
GSE10757	0 min	Supp
GSE10757	evolved temperature up shift 0 min	Gtype
GSE10757	evolved temperature up shift 16 min	Gtype
GSE10757	evolved temperature up shift 44 min	Gtype
GSE10757	genomic DNA	Gtype
GSE10757	Genomic DNA served as a universal reference	Gtype
GSE10757	MG1655 	Gtype
GSE10757	0 min	Supp
GSE10757	12 min	Supp
GSE10757	20 min	Supp
GSE107972	28 min	Supp
GSE107972	44 min	Supp
GSE107972	8 min	Supp
GSE107972	oxygen down shift , 0 min	Gtype
GSE107972	oxygen down shift , 12 min	Gtype
GSE107972	oxygen down shift , 20 min	Gtype
GSE107972	oxygen down shift , 28 min	Gtype
GSE107972	oxygen down shift , 44 min	Gtype
GSE107972	oxygen down shift , 8 min	Gtype
GSE107972	0 min	Supp
GSE107972	12 min	Supp
GSE107972	20 min	Supp
GSE107972	28 min	Supp
GSE107972	44 min	Supp
GSE107972	8 min	Supp
GSE107972	oxygen up shift , 0 min	Gtype
GSE107972	oxygen up shift , 12 min	Gtype
GSE107972	oxygen up shift , 20 min	Gtype
GSE107972	oxygen up shift , 28 min	Gtype
GSE107972	oxygen up shift , 44 min	Gtype
GSE107972	oxygen up shift , 8 min	Gtype
GSE107972	0 min	Supp
GSE107972	parental temperature up shift 0 min	Gtype
GSE107972	parental temperature up shift 16 min	Gtype
GSE107972	parental temperature up shift 44 min	Gtype
GSE10811	0 min	Supp
GSE10811	12 min	Supp
GSE10811	20 min	Supp
GSE10811	28 min	Supp
GSE10811	44 min	Supp
GSE10811	8 min	Supp
GSE10811	temperature down shift , 0 min	Gtype
GSE10811	temperature down shift , 12 min	Gtype
GSE10811	temperature down shift , 20 min	Gtype
GSE10811	temperature down shift , 28 min	Gtype
GSE10811	temperature down shift , 44 min	Gtype
GSE10811	temperature down shift , 8 min	Gtype
GSE10811	0 min	Supp
GSE10855	20 min	Supp
GSE10855	temperature up shift , 0 min	Gtype
GSE10855	temperature up shift , 12 min	Gtype
GSE10855	temperature up shift , 20 min	Gtype
GSE10855	temperature up shift , 28 min	Gtype
GSE10855	temperature up shift , 44 min	Gtype
GSE10855	temperature up shift , 8 min	Gtype
GSE10855	Basecalling performed by MiSeq -LRB- RTA -RRB-	Gtype
GSE10855	carbon source : Glucose	Gtype
GSE10855	carbon source : Glycerol	Gtype
GSE10855	CF104 .3.3 _ u1	Gtype
GSE10855	CF104 .3.3 _ u7	Gtype
GSE10855	CF104 .3.3 _ y2	Gtype
GSE10855	CF104 .3.3 _ y9	Gtype
GSE10855	CON206 .3 A _ u1	Gtype
GSE10855	CON206 .3 A _ u2	Gtype
GSE10855	CON206 .3 A _ y1	Gtype
GSE10855	CON206 .3 A _ y2	Gtype
GSE10855	CON208 .3 A _ u1	Gtype
GSE10855	CON208 .3 A _ u8	Gtype
GSE10855	CON208 .3 A _ y2	Gtype
GSE10855	CON208 .3 A _ y6	Gtype
GSE10855	disease state : control	Gtype
GSE10855	disease state : cystic fibrosis	Gtype
GSE10855	healthy child stool	Gtype
GSE10855	individual : CF patient	Gtype
GSE10855	individual : healthy child	Gtype
GSE10855	replicate : 1	Gtype
GSE10855	replicate : 2	Gtype
GSE10855	RNA-Seq 	Gtype
GSE10855	content : expression level files are tab-delimited text	Gtype
GSE10855	type , reference _ replicon -LRB- type	Gtype
GSE10855	E.coli 	O
GSE10855	45-60 -RRB- in which the endogenous	Gtype
GSE10855	human Hsp10 and the mature part of human wild type	Gtype
GSE10855	MAS5 .0	Gtype
GSE10855	E.coli CFT073 genomic DNA	Gtype
GSE10855	E.coli CFT073 genomic DNA hybridization to LLNL virulence mechanism array v2A	Gtype
GSE10855	E.coli O157 : H7 EDL 933 genomic DNA	Gtype
GSE10855	E.coli O157 : H7 EDL 933 genomic DNA hybridization to LLNL virulence mechanism array v2A	Gtype
GSE10855	Escherichia coli O157 : H7 str . EDL933	Gtype
GSE10855	serovar O157 : H7 strain EDL933 ; GenBank accession NC _ 002655.2	Gtype
GSE10855	strain CFT073 ; GenBank accession AE014075 .1	Gtype
GSE10855	incubation time : 5 hr	Gtype
GSE10855	RNA-Seq 	O
GSE10855	H7 Sakai genome using the Subjunc aligner program from the Subread package -LRB- v1 .4.6 -RRB- -LRB- http :	Gtype
GSE10855	comma-delimited text files include RPKM values	Gtype
GSE108846	The alignment Bam files were compared against the gene annotation general feature format -LRB- GFF -RRB-	Gtype
GSE108846	BC-7ppm replicate 1	Gtype
GSE108846	BC-7ppm replicate 2	Gtype
GSE108846	BC-9ppm replicate 1	Gtype
GSE108846	BC-9ppm replicate 2	Gtype
GSE108846	CH3COOH -LRB- pH 5.9 ± 0.05 -RRB- ; HCl -LRB- pH 4.75 ± 0.05 -RRB- ; NaOH -LRB- pH 9.6 ± 0.05 -RRB- ; EtOH -LRB- 5 % -RRB- ; NaCl -LRB- 4.5 % -RRB- ; Glycerol -LRB- 15 % -RRB- ; BC -LRB- 7 and 9 mg	Gtype
GSE108846	CH3COOH replicate 1	Gtype
GSE108846	CH3COOH replicate 2	Gtype
GSE108846	CH3COOH replicate 3	Gtype
GSE108846	EtBr replicate 1	Gtype
GSE108846	EtBr replicate 2	Gtype
GSE108846	EtBr replicate 3	Gtype
GSE108846	EtOH replicate 1	Gtype
GSE108846	EtOH replicate 2	Gtype
GSE108846	HCl replicate 1	Gtype
GSE108846	HCl replicate 3	Gtype
GSE108846	NaOH replicate 1	Gtype
GSE10974	NaOH replicate 3	Gtype
GSE10974	accession : NC	Gtype
GSE11010	RNAP beta subunit antibody	Gtype
GSE11010	Na10 _ rep3	Gtype
GSE110255	Na20 _ rep3	Gtype
GSE110255	Na45 _ rep3	Gtype
GSE110255	genotype : Fusion of venus to the 3 ' end of rpoC in E. coli wild-type MG1655	Gtype
GSE110255	RNAP beta subunit ChIP DNA from E. coli CC72 10 min after osmotic stress	Gtype
GSE110255	RNAP beta subunit ChIP DNA from E. coli CC72 45 min after osmotic stress	Gtype
GSE110255	antibody against the RNAP β ' subunit and pan mouse magnetic beads . The same sample without the β ' antibody	Gtype
GSE11041	the array of median brightness -LRB- BS -RRB- . Model method : model-base expression ; background substraction : Mismatch Probe -LRB- PM	Gtype
GSE11041	exponential phase	Gtype
GSE11041	JO2057 -LRB- WT -RRB-	Gtype
GSE11041	JO2057 -LRB- WT -RRB- , exponential phase , repetition1	Gtype
GSE11041	JO2057 -LRB- WT -RRB- , exponential phase , repetition2	Gtype
GSE11041	JO2057 -LRB- WT -RRB- , Min Glucose , exponential phase	Gtype
GSE11041	JO2057 -LRB- WT -RRB- , Min Glucose , stationary phase	Gtype
GSE11041	JO2057 -LRB- WT -RRB- , stationary phase , repetition1	Gtype
GSE11041	JO2057 -LRB- WT -RRB- , stationary phase , repetition2	Gtype
GSE11041	JO2057 -LRB- WT -RRB- , transition phase	Gtype
GSE11041	JO2081 -LRB- hupA -RRB-	Gtype
GSE11041	JO2081 -LRB- hupA -RRB- , exponential phase	Gtype
GSE11041	JO2081 -LRB- hupA -RRB- , stationary phase	Gtype
GSE11041	JO2081 -LRB- hupA -RRB- , transition phase	Gtype
GSE11041	JO2083 -LRB- hupB -RRB-	Gtype
GSE11041	JO2083 -LRB- hupB -RRB- , exponential phase	Gtype
GSE11041	JO2083 -LRB- hupB -RRB- , stationary phase	Gtype
GSE11041	JO2083 -LRB- hupB -RRB- , transition phase	Gtype
GSE11041	JO3020 -LRB- hupAB -RRB-	Gtype
GSE11041	JO3020 -LRB- hupAB -RRB- , exponential phase , repetition1	Gtype
GSE11041	JO3020 -LRB- hupAB -RRB- , exponential phase , repetition2	Gtype
GSE110831	JO3020 -LRB- hupAB -RRB- , Min Glucose , exponential phase	Gtype
GSE110831	JO3020 -LRB- hupAB -RRB- , Min Glucose , stationary phase	Gtype
GSE110831	JO3020 -LRB- hupAB -RRB- , stationary phase , repetition1	Gtype
GSE110831	JO3020 -LRB- hupAB -RRB- , stationary phase , repetition2	Gtype
GSE110831	JO3020 -LRB- hupAB -RRB- , transition phase	Gtype
GSE110831	MW30 -LRB- rpoS -RRB-	Gtype
GSE110831	Seven mililiter of phenol	Gtype
GSE110831	stationary phase	Gtype
GSE110831	exponential phase : OD600 0.6-0.7 ; transition : 2.2-2.5 and stationary : 4.6-4.8 -LRB- 3.0	Gtype
GSE110831	transition phase	Phase
GSE110831	Anaerobic , minus nitrate , IP	O
GSE11183	The value is the simple linear ratio of	Gtype
GSE11183	The value is the simple linear ratio of	Gtype
GSE11183	condition : in vivo	Gtype
GSE11183	E058 in vivo , biological rep1	Gtype
GSE11183	E058 in vivo , biological rep2	Gtype
GSE11183	E058 in vivo , biological rep3	Gtype
GSE11183	E058ΔrstAB in vivo , biological rep1	Gtype
GSE11183	E058ΔrstAB in vivo , biological rep2	Gtype
GSE11183	E058ΔrstAB in vivo , biological rep3	Gtype
GSE11183	genotype 	O
GSE11183	strain : E058	Gtype
GSE11183	43 . FHI63.nIND.HUS	Temp
GSE112421	fresh SILAC -LRB- stable isotope labeling	Gtype
GSE112421	E. coli strain FHI24	Gtype
GSE112421	E. coli strain FHI25	Gtype
GSE112421	E. coli strain FHI27	Gtype
GSE112421	E. coli strain FHI36	Gtype
GSE112421	E. coli strain FHI4	Gtype
GSE112421	E. coli strain FHI43	Gtype
GSE112421	E. coli strain FHI48	Gtype
GSE112421	E. coli strain FHI6	Gtype
GSE112421	E. coli strain FHI63	Gtype
GSE112421	E. coli strain FHI66	Gtype
GSE112430	E. coli strain FHI7	Gtype
GSE112430	E. coli strain FHI79	Gtype
GSE112430	E. coli strain FHI8	Gtype
GSE112430	E. coli strain FHI83	Gtype
GSE112430	E. coli strain FHI9	Gtype
GSE112430	E. coli strain FHI95	Gtype
GSE112430	genome accession : GCA _ 000752975	Gtype
GSE112430	genome accession : GCA _ 000753215	Gtype
GSE112430	genome accession : GCA _ 000753275	Gtype
GSE112430	genome accession : GCA _ 000936225	Gtype
GSE112430	genome accession : GCA _ 000936245	Gtype
GSE112430	genome accession : GCA _ 000936475	Gtype
GSE112430	genome accession : GCA _ 000937275	Gtype
GSE112430	genome accession : GCA _ 000938695	Gtype
GSE112430	genome accession : GCA _ 000938995	Gtype
GSE112430	genome accession : GCA _ 000939195	Gtype
GSE112430	genome accession : GCA _ 000939755	Gtype
GSE112430	genome accession : GCA _ 000939955	Gtype
GSE112430	genome accession : GCA _ 000941395	Gtype
GSE112430	genome accession : GCA _ 000941895	Gtype
GSE112430	genome accession : GCA _ 000946755	Gtype
GSE112430	genome accession : GCA _ 000947315	Gtype
GSE112430	genome accession : GCA _ 000951835	Gtype
GSE112430	genome accession : GCA _ 000951875	Gtype
GSE112430	genome accession : GCA _ 000951915	Gtype
GSE112430	genome accession : GCA _ 000965545	Gtype
GSE112430	genome accession : GCA _ 000965555	Gtype
GSE112430	genome accession : GCA _ 000965575	Gtype
GSE112430	genome accession : GCA _ 000965625	Gtype
GSE112430	genome accession : GCA _ 000965635	Gtype
GSE112430	genome accession : GCA _ 000965655	Gtype
GSE112430	genome accession : GCA _ 000965665	Gtype
GSE112430	genome accession : GCA _ 000965705	Gtype
GSE112430	genome accession : GCA _ 000965715	Gtype
GSE112430	genome accession : GCA _ 000966935	Gtype
GSE112430	genome accession : PVRW00000000	Gtype
GSE112430	group -LRB- hus	Gtype
GSE112430	hus	Gtype
GSE112430	csaw -LRB- Bioconductor -RRB-	Gtype
GSE112430	RNA-Seq 	O
GSE112430	strain : FHI12	Gtype
GSE112430	strain : FHI24	Gtype
GSE112430	strain : FHI25	Gtype
GSE112430	strain : FHI27	Gtype
GSE112430	strain : FHI36	Gtype
GSE112430	strain : FHI4	Gtype
GSE112430	strain : FHI43	Gtype
GSE112430	strain : FHI48	Gtype
GSE112430	strain : FHI6	Gtype
GSE112430	strain : FHI63	Gtype
GSE112430	strain : FHI66	Gtype
GSE112430	strain : FHI7	Gtype
GSE112430	strain : FHI79	Gtype
GSE112430	strain : FHI8	Gtype
GSE112430	strain : FHI83	Gtype
GSE112430	strain : FHI9	Gtype
GSE112430	strain : FHI95	Gtype
GSE112430	the weighted likelihood empirical Bayes method	Gtype
GSE112430	We used the SPARTA -LRB- version 1 -RRB- software package	Gtype
GSE112430	Annotation : The reference genome -LRB- Escherichia	Gtype
GSE112430	Bacteria 	O
GSE112430	0.2 µM of lysozyme	Supp
GSE112430	ampicillin -LRB- 100 µg	Gtype
GSE112430	plasmid : pBAD	Gtype
GSE112430	plasmid : pBAD-tosR	Gtype
GSE112430	qC : We checked the quality of the raw reads data	Gtype
GSE112430	RNA-Seq 	O
GSE112430	strain : CFT073	Gtype
GSE112430	30 °C	Gtype
GSE112430	30 °C	Gtype
GSE112430	42 °C	Gtype
GSE112430	30 °C	Supp
GSE112430	E.coli K12 BW25113	Gtype
GSE112430	medium : SB broth	Gtype
GSE112430	Overnight cultures of the dnaB-Ts single mutant -LRB- strain 2429 -RRB- and the dnaB-Ts ΔahpC double mutant -LRB- strain 3780 -RRB-	Gtype
GSE112430	Reads Per Kilobase of exon per Megabase of library size -LRB- RPKM -RRB-	Gtype
GSE112430	RNA-Seq 	O
GSE112430	Samples -LRB- 200-ml -RRB- of the above	Gtype
GSE112430	strain : 2429	Gtype
GSE112430	strain : 3780	Gtype
GSE112430	Tab-delimited text files include RPKM values	Gtype
GSE112430	bacterial cells	Med
GSE112430	U00096 .3	Gtype
GSE112430	RNA-Seq 	O
GSE112430	stimulus : Control	Gtype
GSE112430	K-12 substr .	O
GSE112430	the ` feaureCounts ' function from the R package ` Rsubread '	Gtype
GSE112430	the enriched mRNA using the NEBNext Ultra RNA library prep kit -LRB- NEB	Gtype
GSE112430	The R package ` DESeq2 ' -LRB- Version 1.12.4 -RRB- was used to calculate differential gene expression between the LP group and	Gtype
GSE112430	U00096 .3 -RRB- using bowtie2 -LRB- Version 2.2.4 -RRB-	Gtype
GSE112430	tissue : bacterial cells	Gtype
GSE112430	to the manufacturer 's protocol with the addition of 1 mg	Gtype
GSE112430	bacterial pellet	Gtype
GSE112430	Qiagen 's RNeasy minikit Cat # 74106	Gtype
GSE112878	ChIP-Seq 	O
GSE112878	Escherichia coli W3110 MuSGS -LRB- on the basis of NC	Gtype
GSE114917	strong gyrase binding site from bacteriophage Mu -RRB- with BWA MEM -LRB- default settings -RRB-	Gtype
GSE116304	strain : DY330	Gtype
GSE116304	content : tar archives contain the following :	Gtype
GSE116304	DNA-gyrase binding motif -RRB-	Gtype
GSE116304	text wig files contain coverage depth data	Gtype
GSE116304	position of the genome -RRB-	Gtype
GSE117186	BW25113 	O
GSE117186	envz3600 	O
GSE117186	envz600 	O
GSE117186	envz900 	O
GSE117186	envzM1200 	O
GSE117186	envzM2400 	O
GSE117186	envzM3600 	O
GSE117186	envzM600 	O
GSE117186	envzM900 	O
GSE117186	input signal frequency : 1	Gtype
GSE117186	Ampicillin -LRB- 50 ng	Gtype
GSE117186	plasmid : pLCenvZM , pPCB -LRB- mutation -RRB-	Gtype
GSE117186	Ampicillin -LRB- 50 ng	Gtype
GSE117186	plasmid : pLCenvZ , pPCB -LRB- wild type -RRB-	Gtype
GSE117186	RNA-Seq 	O
GSE117186	strain : JW3367	Gtype
GSE117186	content : The txt file includes the gene expression profiles of all the samples . The xlsx file contains the PC1	Gtype
GSE117186	BW25113 sdiA-empty vector 12h biofilm	Gtype
GSE117186	mutant SdiA1E11	Gtype
GSE117186	wild type SdiA	Gtype
GSE117186	Steady-state continuously-cultured control samples in the presence of adequate Zn	Gtype
GSE117186	Steady-state continuously-cultured experiment samples in the total absence of Zn	Gtype
GSE117186	Steady-state continuously-cultured experiment samples in total absence of Zn	Gtype
GSE117186	Steady-state continuously-cultured MG1655 in the presence of adequate Zn	Gtype
GSE117186	Steady-state continuously-cultured MG1655 in the total absence of Zn	Gtype
GSE117186	severe zinc limitation Chemostat 1B	Gtype
GSE117186	tetrameric human collagen prolyl 4-hydroxylase in Escherichia coli : improvement by gene optimisation of the PDI	Gtype
GSE117186	oxygen downshift , sample S1	Gtype
GSE117186	GCOS 1.0	Gtype
GSE117186	1.0	Gtype
GSE117186	Strain : Escherichia coli W3110 -LSB- F -- IN -LRB- rrnD-rrnE -RRB- 1 -RSB-	Gtype
GSE117186	volume of 8 L . The mineral salt medium contained per liter : 14.6 g K2HPO4 , 3.6 g NaH2PO4 × 2 H2O , 2.0 g Na2SO4 , 2.47 g -LRB- NH4 -RRB- 2SO4 , 0.5 g NH4Cl , 1.0 g -LRB- NH4 -RRB- 2-H-citrate , 2 mM MgSO4 , 0.1 g thiamine hydrochloride , 0.1 mL antifoam 204 -LRB- Sigma -RRB- and 2 mL trace element solution -LRB- 1 -RRB- . The initial glucose concentration was 40 g L-1 . The feed solution contained 650 g L-1 glucose	Gtype
GSE117186	controlled addition of 25 % ammonia solution . At the end of the exponential growth phase -LRB- cell dry weight about 16 g L-1 -RRB- the stirrer rate	Gtype
GSE117186	E. coli control -LRB- biological replicate 2 -RRB-	Gtype
GSE117186	E. coli Frag1 -LRB- biological replicate 2 -RRB-	Gtype
GSE117186	E. coli Frag1 -LRB- control sample 1 -RRB-	Gtype
GSE117186	E. coli Frag1 , hyperosmotic NaCl treatment -LRB- biological replicate 1 -RRB-	Gtype
GSE117186	E. coli Frag1 , NaCl hyperosmotic treatment -LRB- biological replicate 2 -RRB-	Gtype
GSE117186	E.coli Frag1 , sucrose hyperosmotic treatment -LRB- biological replicate 1 -RRB-	Gtype
GSE117186	E. coli Frag1 , sucrose hyperosmotic treatment -LRB- biological replicate 2 -RRB-	Gtype
GSE117186	E. coli NaCl hyperosmotic treatment -LRB- biological replicate 1 -RRB-	Gtype
GSE117186	E. coli NaCl hyperosmotic treatment -LRB- biological replicate 2 -RRB-	Gtype
GSE117186	E. coli sucrose hyperosmotic treatment -LRB- biological replicate 1 -RRB-	Gtype
GSE117186	E. coli sucrose hyperosmotic treatment -LRB- biological replicate 2 -RRB-	Gtype
GSE117186	No treatment -LRB- control sample -RRB- .	Gtype
GSE117186	the RNAeasy MIDI RNA extraction kit -LRB- Qiagen -RRB-	Gtype
GSE117326	E. coli 15 minute 5 µM cadmium dye swap treatment	Gtype
GSE117326	E. coli 5 minute 5 µM cadmium dye swap treatment	Gtype
GSE117326	pH 7 in the presence of 5.4 µM -LRB- 1 µg	Gtype
GSE117326	pH 5 in the presence of 5.4 µM -LRB- 1 µg	Gtype
GSE117326	pH 5 in the presence of 5.4 µM -LRB- 1 µg	Gtype
GSE11779	pH 7 in the presence of 5.4 µM -LRB- 1 µg	Gtype
GSE11779	pH 7 in the presence of 5.4 µM -LRB- 1 µg	Gtype
GSE11779	the ma-anova package in the open-source statistical software package , R -LRB- www.r-project.org	Gtype
GSE11779	the ma-anova package in the open-source statistical software package , R -LRB- www.r-project.org	Gtype
GSE11894	low IPTG -LRB- 0.1 mM -RRB- , biological rep1 , technical rep 1	Gtype
GSE11894	low IPTG -LRB- 0.1 mM -RRB- , biological rep2 , technical rep 1	Gtype
GSE12006	0.1 mM IPTG	Supp
GSE12006	0 mM IPTG	Supp
GSE12006	1.0 mM IPTG	Supp
GSE12006	low IPTG -LRB- 0.1 mM -RRB- , biological rep1 , technical rep 1	Gtype
GSE12006	low IPTG -LRB- 0.1 mM -RRB- , biological rep2 , technical rep 1	Gtype
GSE12006	0.1 mM IPTG	Supp
GSE12006	0 mM IPTG	Supp
GSE12190	1.0 mM IPTG	Supp
GSE12190	to the manufacturer 's protocol	Gtype
GSE12190	Exp-rpoS-Rep1 	O
GSE12190	Exp-rpoS-Rep2 	O
GSE12190	Exp-rpoS-Rep3 	O
GSE12190	Exp-WT-Rep1 	O
GSE12190	Exp-WT-Rep2 	O
GSE12190	Exp-WT-Rep3 	O
GSE12190	MG1655 rpoS mutants	Gtype
GSE12190	MG1655 wild type	Gtype
GSE12190	Stat-rpoS-Rep1 	Gtype
GSE12190	Stat-rpoS-Rep2 	Gtype
GSE12190	Stat-rpoS-Rep3 	Gtype
GSE12190	Stat-WT-Rep1 	Gtype
GSE12190	Stat-WT-Rep2 	Gtype
GSE12190	Stat-WT-Rep3 	Gtype
GSE12373	E. coli 8624 qseF deletion mutant	Gtype
GSE12373	Escherichia coli 8624 qseF deletion mutant	Gtype
GSE12373	strain : Escherichia coli 8624	Gtype
GSE12373	Sample 1a	Gtype
GSE12373	Sample 1b	Gtype
GSE12373	Sample 2a	Gtype
GSE12373	Sample 2b	Gtype
GSE12373	Sample 3a	Gtype
GSE12373	Sample 3b	Gtype
GSE12373	Sample 4a	Gtype
GSE12373	Sample 4b	Gtype
GSE12373	Anaerobic E. coli exposed to CO-RMs for 15 minutes	O
GSE12373	Anaerobic E. coli not exposed to CO-RMs for 15 minutes -LRB- control cells -RRB-	O
GSE12373	Anaerobic E. coli were exposed to CO-RMs for 15 minutes	O
GSE12373	Anaerobic MG1655 exposed to CO-RMs for 15 minutes	O
GSE12373	Anaerobic MG1655 not exposed to CO-RMs for 15 minutes -LRB- control cells -RRB-	O
GSE12373	Anaerobic MG1655 were exposed to CO-RMs for 15 minutes	O
GSE12411	Sample 1a	Gtype
GSE12411	Sample 1b	Gtype
GSE12411	Sample 2a	Gtype
GSE12411	Sample 2b	Gtype
GSE12411	Sample 3a	Gtype
GSE12411	Sample 3b	Gtype
GSE12411	Sample 4a	Gtype
GSE12411	Sample 4b	Gtype
GSE12411	REL606 , exponential phase , LB	Gtype
GSE12411	REL606 , stationary phase , LB	Gtype
GSE12411	Ecoli ko-arcA grown in MOPS	Med
GSE12797	Ecoli ko-fur grown in MOPS	Med
GSE12797	Ecoli ko-ihfA grown in MOPS	Med
GSE12831	Ecoli ko-phoB grown in MOPS	Med
GSE12831	Ecoli ko-ubiE grown in MOPS	Med
GSE12831	wildtype _ 1 % _ butanol _ Sample1 _ TechRep1	Gtype
GSE12877	wildtype _ 1 % _ butanol _ Sample1 _ TechRep2	Gtype
GSE12877	wildtype _ 1 % _ butanol _ Sample2 _ TechRep1	Gtype
GSE12877	wildtype _ 1 % _ butanol _ Sample2 _ TechRep2	Gtype
GSE12877	wildtype _ 1 % _ butanol _ Sample3 _ TechRep1	Gtype
GSE12877	wildtype _ 1 % _ butanol _ Sample3 _ TechRep2	Gtype
GSE12877	wildtype _ 1 % _ butanol _ Sample4 _ TechRep1	Gtype
GSE12877	wildtype _ 1 % _ butanol _ Sample4 _ TechRep2	Gtype
GSE12877	wildtype _ 1 % _ isobutanol _ Sample1 _ TechRep1	Gtype
GSE12877	wildtype _ 1 % _ isobutanol _ Sample1 _ TechRep2	Gtype
GSE12877	wildtype _ 1 % _ isobutanol _ Sample2 _ TechRep1	Gtype
GSE12877	wildtype _ 1 % _ isobutanol _ Sample2 _ TechRep2	Gtype
GSE12877	wildtype _ 1 % _ isobutanol _ Sample3 _ TechRep1	Gtype
GSE12877	wildtype _ 1 % _ isobutanol _ Sample3 _ TechRep2	Gtype
GSE12877	wildtype _ 1 % _ isobutanol _ Sample4 _ TechRep1	Gtype
GSE12877	wildtype _ 1 % _ isobutanol _ Sample4 _ TechRep2	Gtype
GSE12878	wildtype _ 1 % _ isobutanol _ Sample5 _ TechRep1	Gtype
GSE12878	wildtype _ 1 % _ isobutanol _ Sample5 _ TechRep2	Gtype
GSE12878	wildtype _ 3 % _ ethanol _ Sample1 _ TechRep1	O
GSE12878	wildtype _ 3 % _ ethanol _ Sample1 _ TechRep2	O
GSE12878	wildtype _ 3 % _ ethanol _ Sample2 _ TechRep1	O
GSE12878	wildtype _ 3 % _ ethanol _ Sample2 _ TechRep2	O
GSE12878	wildtype _ 3 % _ ethanol _ Sample3 _ TechRep1	O
GSE12878	wildtype _ 3 % _ ethanol _ Sample3 _ TechRep2	O
GSE12878	wildtype _ 3 % _ ethanol _ Sample4 _ TechRep1	O
GSE12878	wildtype _ 3 % _ ethanol _ Sample4 _ TechRep2	O
GSE12878	wildtype _ calibration _ Sample1 _ TechRep1	Gtype
GSE12878	wildtype _ calibration _ Sample1 _ TechRep2	Gtype
GSE12878	wildtype _ calibration _ Sample2 _ TechRep1	Gtype
GSE12878	wildtype _ calibration _ Sample2 _ TechRep2	Gtype
GSE12878	Ecoli wildtype grown in MOPS	Med
GSE13011	strain : BW25113	Gtype
GSE13011	Strain : BW25113	Gtype
GSE13011	Strain : BW25113	Gtype
GSE13011	BW25113 , water -LRB- negative control -RRB-	Gtype
GSE13011	BW25113 ychH , H2O2	Gtype
GSE13011	BW25113 ychH , water -LRB- negative control -RRB-	Gtype
GSE13011	BW25113 ygiW , H2O2	Gtype
GSE13011	BW25113 ygiW , water -LRB- negative control -RRB-	Gtype
GSE13444	Genomic DNA control	Gtype
GSE13444	Genomic DNA control from E. coli K-12 MG1655 HA3 : : nusG cells	Gtype
GSE13444	Monoclonal antibody for RNA polymerase Beta ' subunit -LRB- NT73 -RRB-	Anti
GSE13444	: nusG cells	Gtype
GSE13444	RNA polymerase -LRB- Beta ' -RRB- ChIP-chip	Anti
GSE13444	RNA polymerase -LRB- Beta ' -RRB- ChIP-chip	Anti
GSE13444	RNA polymerase -LRB- Beta ' -RRB- ChIP-chip	Anti
GSE13444	RNA polymerase -LRB- Beta ' -RRB- ChIP-chip	Anti
GSE13444	RNA polymerase -LRB- Beta ' -RRB- ChIP-chip	Anti
GSE13444	RNA polymerase -LRB- Beta ' -RRB-	Anti
GSE13444	RNA polymerase -LRB- Beta ' -RRB-	Anti
GSE13444	RNA polymerase -LRB- Beta ' -RRB-	Anti
GSE13444	RNA polymerase -LRB- Beta ' -RRB-	Anti
GSE13444	VALUE = log2 -LRB- Cy3 _ signal	Gtype
GSE13444	VALUE = log2 -LRB- Cy5 _ signal	Gtype
GSE13444	15 min _ aerobic	Gtype
GSE13444	EHEC strain 86-24	Gtype
GSE13444	Trizol -LRB- Invitrogen -RRB-	Gtype
GSE13444	Treatment 2 : AA30 -LRB- EHEC 86-24 pH 5.0 , followed by 30 min pH 3.0 -RRB-	Gtype
GSE13698	BW25113 	O
GSE13698	BW25113 wt	Gtype
GSE13698	Chipchip BW25113	Phase
GSE13698	wild type BW25113	Gtype
GSE13698	wild type BW25113	Gtype
GSE13698	K-12 BW25113 wild type	Gtype
GSE13938	72 hr colony growth equiv . to wildtype colony size	Gtype
GSE13938	L-form colony morphology	Gtype
GSE13938	MasterPure RNA purification Kit	Gtype
GSE13938	overnight colony growth	Gtype
GSE13938	strain : L-form	Gtype
GSE13938	strain : wildtype	Gtype
GSE13938	wildtype , brain heart infusion agar , rep 1	Gtype
GSE13938	wildtype , brain heart infusion agar , rep 2	Gtype
GSE13938	wildtype , brain heart infusion agar , rep 3	Gtype
GSE13938	wildtype , brain heart infusion agar	Gtype
GSE13938	wildtype , brain heart infusion agar	Gtype
GSE13938	wildtype , brain heart infusion agar	Gtype
GSE13938	wildtype colony morphology	Gtype
GSE13938	Escherichia coli 8624 in LB	Med
GSE13938	Escherichia coli 8624 kdpE deletion mutant	Gtype
GSE13938	Escherichia coli 8624 qseB deletion mutant	Gtype
GSE13982	strain : Escherichia coli 8624	Gtype
GSE13982	strain : Escherichia coli strain 8624	Gtype
GSE13982	strain : Escherichia coli strain 8624 kdpE mutant	Gtype
GSE13982	strain : Escherichia coli strain 8624 qseB mutant	Gtype
GSE13982	strain : Escherichia coli strain 8624 qseC	Gtype
GSE13982	strain : Escherichia coli strain 8624 qseC mutant	Gtype
GSE13982	E. coli strain B-a	Gtype
GSE13982	E. coli strain B-b	Gtype
GSE13982	E. coli strain K12-a	Gtype
GSE13982	E. coli strain K12-b	Gtype
GSE13982	E. coli strain K12-c	Gtype
GSE13982	E. coli strain K12-d	Gtype
GSE13982	E. coli strain K12 DNA	Gtype
GSE14069	strain : B	Gtype
GSE14069	Adenosine addition	Phase
GSE14069	Alanine addition	Gtype
GSE14069	Arginine addition	Supp
GSE14069	Aspartate addition	Phase
GSE14069	Cysteine addition	Phase
GSE14069	Cytidine addition	Phase
GSE14069	Glutamate addition	Gtype
GSE14069	Glutamine addition	Gtype
GSE14069	Glycine addition	Gtype
GSE14069	Guanosine addition	Gtype
GSE14069	Histidine addition	Gtype
GSE14203	Isoleucine addition	Phase
GSE14203	Lysine addition	Gtype
GSE14203	Methionine addition	Phase
GSE14203	Phenylalanine addition	Gtype
GSE14203	Proline addition	Gtype
GSE14203	Serine addition	Phase
GSE14203	stress : Adenosine addition	Gtype
GSE14203	stress : Alanine addition	Gtype
GSE14203	stress : Arginine addition	Gtype
GSE14203	stress : Aspartate addition	Gtype
GSE14203	stress : control -LRB- before perturbation -RRB-	Gtype
GSE14203	stress : Cysteine addition	Gtype
GSE14203	stress : Cytidine addition	Gtype
GSE14203	stress : Glutamate addition	Gtype
GSE14203	stress : Glutamine addition	Gtype
GSE14203	stress : Glycine addition	Gtype
GSE14203	stress : Guanosine addition	Gtype
GSE14796	stress : Histidine addition	Gtype
GSE14796	stress : Isoleucine addition	Gtype
GSE14796	stress : Lysine addition	Gtype
GSE14796	stress : Methionine addition	Gtype
GSE14796	stress : Phenylalanine addition	Gtype
GSE14796	stress : Proline addition	Gtype
GSE14796	stress : Serine addition	Gtype
GSE14796	stress : Threonine addition	Gtype
GSE14796	stress : Thymidine addition	Gtype
GSE14796	stress : Tryptophan addition	Gtype
GSE14796	stress : Uridine addition	Gtype
GSE14796	stress : Valine addition	Gtype
GSE14796	Threonine addition	Phase
GSE14796	Thymidine addition	Gtype
GSE14796	Tryptophan addition	Gtype
GSE14796	Uridine addition	Phase
GSE14796	Valine addition	Gtype
GSE14796	antibody : IgG	Gtype
GSE15050	antibody : RNAP beta subunit -LRB- NT63 -RRB-	Gtype
GSE15050	condition : heat-shocked condition without rifampicin treatment	Gtype
GSE15050	condition : mid-exponential condition without rifampicin treatment	Gtype
GSE15050	condition : mid-exponential condition with rifampicin treatment	Gtype
GSE15050	condition : nitrogen-limiting condition without rifampicin treatment	Gtype
GSE15050	condition : stationary condition without rifampicin treatment	Gtype
GSE15050	normal mouse IgG -LRB- Upstate -RRB- for the control -LRB- mock-IP -RRB- .	Gtype
GSE15050	4822 -RRB-	Gtype
GSE15050	rifampicin treatment	Supp
GSE15050	rifampicin treatment	Supp
GSE15050	rifampicin treatment	Supp
GSE15050	rifampicin treatment	Supp
GSE15050	rifampicin treatment	Supp
GSE15050	Input DNA from heat-shocked condition without rifampicin treatment	Gtype
GSE15391	Input DNA from mid-exponential condition without rifampicin treatment	Gtype
GSE15391	rifampicin treatment	Supp
GSE15391	Input DNA from nitrogen-limiting condition without rifampicin treatment	Gtype
GSE15391	Input DNA from stationary condition without rifampicin treatment	Gtype
GSE15391	reference : Input DNA	Gtype
GSE15391	strain : MG1655	Gtype
GSE15391	test : ChIP DNA	Gtype
GSE15409	replicate : 1	Gtype
GSE15409	replicate : 2	Gtype
GSE15409	replicate : 3	Gtype
GSE15409	replicate : 4	Gtype
GSE15409	strain : e. coli o157 H7 strain TW10915	Gtype
GSE15409	strain : e. coli o157 H7 strain TW10916	Gtype
GSE15409	strain : e. coli o157 H7 strain TW10917	Gtype
GSE15409	strain : e. coli o157 H7 strain TW10938	Gtype
GSE15409	strain : e. coli o157 H7 strain TW10948	Gtype
GSE15409	strain : e. coli o157 H7 strain TW10950	Gtype
GSE15409	strain : e. coli o157 H7 strain TW10957	Gtype
GSE15409	strain : e. coli o157 H7 strain TW10967	Gtype
GSE15409	Genomic DNA Extraction : Genomic DNA	Gtype
GSE15409	chloroform : isoamyl alcohol . A white disk was readily discernible at the aqueous	Gtype
GSE15409	genomic _ ref1	Gtype
GSE15409	genomic _ ref2	Gtype
GSE15409	genomic _ ref3	Gtype
GSE15409	genomic _ ref4	Gtype
GSE15409	genomic _ ref5	Gtype
GSE15409	genomic _ ref6	Gtype
GSE15588	early-phase DNA-protein complexes	Gtype
GSE15588	early-phase DNA-protein complexes	Gtype
GSE15588	late-phase DNA-protein complexes	Gtype
GSE15588	MG1655 genomic DNA	Gtype
GSE15588	MG1655 RNA	Phase
GSE15588	strain : MDS42	Gtype
GSE15588	strain : MG1655	Gtype
GSE15588	Monoclonal antibody for RNA polymerase Beta ' subunit -LRB- NT73 -RRB-	Anti
GSE15588	Monoclonal antibody for RNA polymerase Beta subunit -LRB- W0002 -RRB-	Anti
GSE15588	reference : input Genomic DNA control	Gtype
GSE15588	RNA polymerase -LRB- Beta ' -RRB- ChIP-chip	Anti
GSE15588	RNA polymerase -LRB- Beta -RRB- ChIP-chip	Anti
GSE15588	RNA polymerase -LRB- Beta ' -RRB- ChIP-chip	Anti
GSE15588	RNA polymerase -LRB- Beta -RRB- ChIP-chip	Anti
GSE15588	RNA polymerase -LRB- Beta ' -RRB-	Anti
GSE15588	RNA polymerase -LRB- Beta	Anti
GSE15588	RNA polymerase -LRB- Beta ' -RRB-	Anti
GSE15588	RNA polymerase -LRB- Beta	Anti
GSE15588	VALUE = log2 -LRB- Cy5 _ signal	Gtype
GSE15588	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba	Gtype
GSE15588	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba vs. Control Slide 1	Gtype
GSE15588	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba vs. Control Slide 2	Gtype
GSE15588	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba vs. Control Slide 3	Gtype
GSE15588	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba vs. Control Slide 4	Gtype
GSE15588	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba vs. Control Slide 5	Gtype
GSE15588	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba vs. Control Slide 6	Gtype
GSE15783	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba vs. Control Slide 7	Gtype
GSE15783	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba vs. Control Slide 8	Gtype
GSE15783	Escherichia coli O157 : H7 EDL933 Inside Acanthamoeba vs. Control Slide 9	Gtype
GSE15783	Escherichia coli O157 : H7 EDL933 Outside Control	Gtype
GSE15783	growth condition : Inside Acanthamoeba	Gtype
GSE15783	growth condition : Outside Control	Gtype
GSE15783	-LSB- mean log transformed median centered lowess normalized signal intensity -RSB-	Gtype
GSE15783	30 min on ice in RNA stop solution -LRB- 0.1 % SDS , 1 % Acidic phenol , 19 % ethanol , ice cold -RRB-	Gtype
GSE15783	Genomic response analysis of E.coli during coexpression of a bacteriocin release protein	Gtype
GSE15783	time point : 0 minutes related to point of BRP induction	Gtype
GSE15783	time point : -10 minutes related to point of BRP induction	Gtype
GSE15783	time point : 10 minutes related to point of BRP induction	Gtype
GSE15783	time point : 20 minutes related to point of BRP induction	Gtype
GSE15783	time point : 2 minutes related to point of BRP induction	Gtype
GSE15783	time point : 30 minutes related to point of BRP induction	Gtype
GSE15783	time point : 45 minutes related to point of BRP induction	Gtype
GSE15783	time point : 5 minutes related to point of BRP induction	Gtype
GSE15783	0min-1 	O
GSE15783	0min-2 	O
GSE15783	0min-3 	O
GSE15783	195min-1 	O
GSE15783	195min-2 	O
GSE15783	195min-3 	O
GSE15783	30 min , 0.8 % butanol	Gtype
GSE15783	30min-1 	Gtype
GSE15783	30min-2 	Gtype
GSE15783	30min-3 	Gtype
GSE15783	30 min , unstressed	Gtype
GSE15783	80min-1 	O
GSE15783	80min-2 	O
GSE15783	80min-3 	O
GSE16414	strain : E. coli DH1	Gtype
GSE16414	time : 0 min	Gtype
GSE16414	time : 195 min	Gtype
GSE16414	30 min	Supp
GSE16414	time : 80 min	Gtype
GSE16414	81-4420 	O
GSE16414	83-2315 	O
GSE16414	86-1390 	O
GSE16414	86-4220 	O
GSE16414	87-4725 	O
GSE16414	88-1861 	O
GSE16414	88-4299 	O
GSE16414	89-56-196 	O
GSE16414	91-19-172 	O
GSE16414	EDL -LRB- O157 : H7 -RRB-	Gtype
GSE16414	Escherichia coli O157 : H7	Gtype
GSE16414	Escherichia coli O157 : H7 str . EDL933	Gtype
GSE16414	referece : The three	Gtype
GSE16414	H7 -RRB-	Gtype
GSE16414	See the paper Variation in the Genomic islands of porcine enteropathogenic	Gtype
GSE16414	strain : EHEC strain	Gtype
GSE16414	strain : Porcine EPEC strain O45	Gtype
GSE16414	strain : Rabbit EPEC strain O103	Gtype
GSE16562	FRIK2000 Cy3 rep1 vs EDL933 pool Cy5	Gtype
GSE16562	FRIK2000 Cy3 rep3 vs EDL933 pool Cy5	Gtype
GSE16562	FRIK2000 Cy5 rep4 vs EDL933 pool Cy3	Gtype
GSE16562	FRIK966 Cy3 rep1 vs EDL933 pool Cy5	Gtype
GSE16562	FRIK966 Cy3 rep3 vs EDL933 pool Cy5	Gtype
GSE16562	FRIK966 Cy5 rep2 vs EDL933 pool Cy3	Gtype
GSE16562	FRIK966 Cy5 rep4 vs EDL933 pool Cy3	Gtype
GSE16562	isolate : bovine isolate of e coli o157 : H7 FRIK2000 lineage II	Gtype
GSE16562	isolate : bovine isolate of e coli o157 : H7 FRIK966 lineage II	Gtype
GSE16562	isolate : clinical isolate e coli o157 : H7 lineage I	Gtype
GSE16562	RNA from late log phase E coli EDL933 pooled reference	Gtype
GSE16562	RNA from late log phase E coli FRIK2000 rep 1	Gtype
GSE16562	RNA from late log phase E coli FRIK2000 rep 2	Gtype
GSE16562	RNA from late log phase E coli FRIK2000 rep 3	Gtype
GSE16762	RNA from late log phase E coli FRIK2000 rep 4	Gtype
GSE16762	RNA from late log phase E coli FRIK966 rep 1	Gtype
GSE16762	RNA from late log phase E coli FRIK966 rep 2	Gtype
GSE16762	RNA from late log phase E coli FRIK966 rep 3	Gtype
GSE16762	RNA from late log phase E coli FRIK966 rep 4	Gtype
GSE16762	strain : EDL933	Gtype
GSE16762	strain : FRIK2000	Gtype
GSE16762	strain : FRIK966	Gtype
GSE16762	E.coli ， 37 °C ， 60 min	Gtype
GSE16946	direct labeling method -LRB- replicate-1 -RRB-	Gtype
GSE16946	direct labeling method -LRB- replicate-2 -RRB-	Gtype
GSE16946	PAOD method -LRB- replicate-1 -RRB-	Gtype
GSE16946	PAOD method -LRB- replicate-2 -RRB-	Gtype
GSE16946	random priming method -LRB- replicate-1 -RRB-	Gtype
GSE16946	random priming method -LRB- replicate-2 -RRB-	Gtype
GSE16946	strain : DH5α	Gtype
GSE16946	which the intensity was lower than the average intensity plus 2 standard deviations of the negative controls on the array	Gtype
GSE16946	gyrase binding -LRB- ChIP-chip -RRB- no. 1	Gtype
GSE16946	gyrase binding -LRB- ChIP-chip -RRB- no. 2	Gtype
GSE16946	gyrase binding -LRB- ChIP-chip -RRB- no. 4	Gtype
GSE16946	gyrase binding -LRB- ChIP-chip -RRB- no. 5	Gtype
GSE16946	gyrase binding -LRB- ChIP-chip -RRB- no. 6	Gtype
GSE16946	gyrase binding -LRB- ChIP-chip -RRB- no. 7	Gtype
GSE16946	gyrase binding -LRB- ChIP-chip -RRB- no. 8	Gtype
GSE16946	Reference Genomic DNA	Gtype
GSE16946	Escherichia coli O157 : H7 str . EDL933	Gtype
GSE16946	OD600 of 0.3	OD
GSE16946	Exponential phase culture of EDL933 wild type	Gtype
GSE16946	OD600 of 0.3	OD
GSE16946	Exp-rpoS-rep1 	OD
GSE16946	Exp-rpoS-rep2 	OD
GSE16946	Exp-rpoS-rep3 	OD
GSE16946	Exp-WT-rep1 	OD
GSE16946	Exp-WT-rep2 	OD
GSE16946	Exp-WT-rep3 	OD
GSE16946	GCRMA method	Phase
GSE16946	genotype : rpoS	Gtype
GSE16946	growth phase : Exponential	Gtype
GSE16946	growth phase : Stationary	Gtype
GSE16973	OD600 of 1.5	OD
GSE16973	Stationary phase culture of EDL933 wild type	Gtype
GSE16973	OD600 of 1.5	OD
GSE16973	Stat-rpoS-rep1 	OD
GSE16973	Stat-rpoS-rep2 	OD
GSE16973	Stat-rpoS-rep3 	OD
GSE16973	Stat-WT-rep1 	OD
GSE16973	Stat-WT-rep2 	OD
GSE16973	Stat-WT-rep3 	OD
GSE16973	agent : no triclosan	Gtype
GSE16973	agent : triclosan	Gtype
GSE16973	E. coli imp fabI -LRB- G93V -RRB- -LSB- control -RSB-	Gtype
GSE16973	E. coli imp fabI -LRB- G94V -RRB- -LSB- control -RSB-	Gtype
GSE16973	imp mutation : contains a 23 codon deletion allele in imp -LRB- increased membrane permeability -RRB- , substitution of the 93th codon of fabI , NTG treatment ; fabI -LRB- G93V -RRB- , substitution of Gly -LRB- the 93th codon -RRB- of fabI	Gtype
GSE16973	imp mutation : contains a 23 codon deletion allele in imp -LRB- increased membrane permeability -RRB- , substitution of the 94th codon of fabI , NTG treatment ; fabI -LRB- G93V -RRB- , substitution of Gly -LRB- the 94th codon -RRB- of fabI	Gtype
GSE16973	imp mutation : contains a 23 codon detion allele in imp -LRB- increased membrane permeability -RRB- , substitution of the 93th codon of fabI ; fabI -LRB- G93V -RRB- , substitution of Gly -LRB- the 93th codon -RRB- of fabI with Val	Gtype
GSE16973	imp mutation : contains a 23 codon detion allele in imp -LRB- increased membrane permeability -RRB- , substitution of the 94th codon of fabI ; fabI -LRB- G93V -RRB- , substitution of Gly -LRB- the 94th codon -RRB- of fabI with Val	Gtype
GSE16973	No triclosan treatment	Gtype
GSE16973	NTG-treated E. coli imp fabI -LRB- G93V -RRB- -LSB- E. coli IFN4 -RSB-	Gtype
GSE16973	NTG-treated E. coli imp fabI -LRB- G93V -RRB- -LSB- E. coli IFN5 -RSB-	Gtype
GSE16973	ntg treatment : yes	Gtype
GSE16973	passage : 4	Gtype
GSE16973	strain : E. coli imp 4231 -LRB- G93V -RRB-	Gtype
GSE16973	strain : E. coli imp 4231 -LRB- G93V -RRB- , substitution of the 93th codon of fabI	Gtype
GSE16973	strain : E. coli imp 4231 -LRB- G93V -RRB- , substitution of the 94th codon of fabI	Gtype
GSE16973	Transcription profiles of NTG-treated E. coli imp fabI -LRB- G93V -RRB- and its control strain in the absence of triclosan	Gtype
GSE16973	Transcription profiles of NTG-treated E. coli imp fabI -LRB- G93V -RRB- and its control strain in the presence of triclosan	Gtype
GSE16973	Treatment of sub-lethal triclosan ; 50 mg	Gtype
GSE16973	5mL of hot acid phenol : chloroform	Gtype
GSE16973	isoamyl alcohol -LRB- 24.1 -RRB- . RNA was precipitated overnight	Gtype
GSE16973	genotype : rpoN mutant -LRB- EcJR-8 -RRB-	Gtype
GSE17036	genotype : wild type	Gtype
GSE17036	growth protocol : logarithmic phase in DMEM-MOPS	Gtype
GSE17036	growth protocol : transition phase in DMEM-MOPS	Gtype
GSE17036	Logarithmic phase sample 1	Gtype
GSE17036	Logarithmic phase sample 2	Gtype
GSE17036	Logarithmic phase sample 3	Gtype
GSE17036	Logarithmic phase sample 4	Gtype
GSE17036	transition phase	Phase
GSE17036	Transition phase sample 1	Gtype
GSE17036	Transition phase sample 2	Gtype
GSE17036	Transition phase sample 3	Gtype
GSE17036	Transition phase sample 4	Gtype
GSE17036	wild type grown to logarithmic phase	Gtype
GSE17036	wild type grown to transition phase	Gtype
GSE17036	plasmid : pPROEx-CAT	Gtype
GSE17070	5 mM IPTG	Supp
GSE17070	Serine hydrxamate -LRB- 100 mg	Gtype
GSE17070	strain : MG1655	Gtype
GSE17070	1A 1y	Phase
GSE17070	1A 4y	Phase
GSE17070	1A T0	Phase
GSE17070	2A 1y	Phase
GSE17070	2A 4y	Phase
GSE17074	3A 1m	Phase
GSE17074	3A 1y	Phase
GSE17074	3A 4y	Phase
GSE17074	4A 1m	Phase
GSE17074	4A 1y	Phase
GSE17074	4A 4y	Phase
GSE17074	5A 1m	Phase
GSE17074	6A 1m	Phase
GSE17074	9A 3y	Gtype
GSE17074	9A 5y	Gtype
GSE17074	9A T0	Phase
GSE17074	Alert 	Phase
GSE17074	Archaea 	Phase
GSE17074	Bacteria 	Phase
GSE17074	Bio1 1m	Phase
GSE17074	Bio1 1y	Phase
GSE17074	Bio2 1m	Phase
GSE17074	Bio2 1y	Phase
GSE17074	Bio3 1m	Phase
GSE17074	Bio3 1y	Phase
GSE17074	Bio4 1m	Phase
GSE17074	Bio4 1y	Phase
GSE1735	Bio-6 	Phase
GSE1735	Bio Contro	Phase
GSE1735	Alert -LRB- ex situ -RRB-	Gtype
GSE1735	Eureka -LRB- in situ -RRB-	Gtype
GSE1735	BZNT 	Gtype
GSE1735	CompA 	Gtype
GSE1735	CompB 	Gtype
GSE1735	contamination status : hydrocarbon contaminated	Gtype
GSE1735	coli	O
GSE1735	Lambda phage	Gtype
GSE1735	NFNT 	Gtype
GSE1735	phage : Lambda	Gtype
GSE1735	Poly 	Gtype
GSE1735	sample : 1A	Gtype
GSE1735	sample : 23S	Gtype
GSE1735	sample : 2A	Gtype
GSE1735	sample : 32D	Gtype
GSE17420	sample : 33D	Gtype
GSE17420	sample : 35B	Gtype
GSE17420	sample : 3A	Gtype
GSE17420	sample : 4A	Gtype
GSE17420	sample : 5A	Gtype
GSE17420	sample : # 6	Gtype
GSE17420	sample : 6A	Gtype
GSE17420	sample : 9A	Gtype
GSE17420	sample : Bio-1	Gtype
GSE17420	sample : Bio-2	Gtype
GSE17420	sample : Bio-3	Gtype
GSE17420	sample : Bio-4	Gtype
GSE17420	sample : Biopile control	Gtype
GSE17420	sample : BZ-NT	Gtype
GSE17420	sample : Composite A	Gtype
GSE17420	sample : Composite B	Gtype
GSE17420	sample : LC-1	Gtype
GSE17420	sample : NC	Gtype
GSE17420	sample : NF-NT	Gtype
GSE17420	sample : Polygons	Gtype
GSE17420	sample : Vegetated	Gtype
GSE17420	the histogram quantitation method ; the percentile ranges	Gtype
GSE17420	high background range . The median intensity minus the median background intensity	Gtype
GSE17420	-LRB- Median Signal -- Median Background -RRB-	Gtype
GSE17420	year : 2000	Gtype
GSE17441	year : 2001	Gtype
GSE17441	year : 2003	Gtype
GSE17441	year : 2004	Gtype
GSE17441	year : 2005	Gtype
GSE17441	year : 2006	Gtype
GSE17441	year : 2007	Gtype
GSE17441	year : 2008	Gtype
GSE17441	0.5 % -LRB- w	Gtype
GSE17441	0 % sodiumbenzoate _ 0 min	Gtype
GSE17441	0 % sodiumbenzoate _ 15 min	Gtype
GSE17441	30 min	Supp
GSE17441	0 % sodiumbenzoate _ 5 min	Gtype
GSE17441	0 % sodiumbenzoate _ 60 min	Gtype
GSE17441	E.coliO157 _ 0.5 % -LRB- w	Gtype
GSE17441	30 min	Supp
GSE17441	30 min	Supp
GSE17467	Escherichia coli O157 : H7 str . EDL933	Gtype
GSE17467	growth phase : stationary	Gtype
GSE17467	Stationary phase growth -LRB- 24 hr -RRB- ~ 8 log CFU	Gtype
GSE17467	0.5 hour expression of synthetic protein DX in E. coli	Gtype
GSE17467	1.5 hour expression of synthetic protein DX in E. coli	Gtype
GSE17467	1 hour expression of synthetic protein DX in E. coli	Gtype
GSE17467	2 hour expression of synthetic protein DX in E. coli	Gtype
GSE17467	3.5 hour expression of synthetic protein DX in E. coli	Gtype
GSE17467	3 hour expression of synthetic protein DX in E. coli	Gtype
GSE17467	4 hour expression of synthetic protein DX in E. coli	Gtype
GSE17467	median normalize each channel and lowess normalize the sample set .	Gtype
GSE17467	reference : E. coli TOP10 containing pBAD18 vector with no arabinose added	Gtype
GSE17506	cell type : biofilm	Gtype
GSE17506	growth protocol : biofilm grown on glass wool , 37C	Gtype
GSE17506	medium : LB	Gtype
GSE17506	pCA24N-hnsK57N biofilm	Phase
GSE17506	strain : BW25113 hha hns	Gtype
GSE17506	time : 7 hours	Gtype
GSE17506	Adapted E. coli -LRB- DST160 , tolerant to high succinic acid concentration -RRB-	Gtype
GSE17506	E. coli W3110 -LRB- control -RRB-	Gtype
GSE17506	rep Dn	Gtype
GSE17506	rep Up	Gtype
GSE17506	sample type : control	Gtype
GSE17517	sample type : test	Gtype
GSE17517	30 g	Gtype
GSE17517	to the supplier 's protocol -LRB- the composition of the RNeasy solutions are unknown -RRB-	Gtype
GSE17517	strain : TG-1	Gtype
GSE17517	strain : TG-2	Gtype
GSE17517	The average fluorescent signal intensity and local background correction	Gtype
GSE17517	A-stat gene expression changes 0.3	Gtype
GSE17517	specific growth rate : 0.3 h-1	Gtype
GSE17517	Specific growth rate 0.3 h-1	Gtype
GSE17517	specific growth rate : 0.47 h-1	Gtype
GSE17517	Specific growth rate 0.47 h-1	Gtype
GSE17517	strain : Escherichia coli K12 MG1655	Gtype
GSE17517	OD600 of about 0.3	OD
GSE17517	30 °C -LRB- see control sample -RRB-	Temp
GSE17517	OD600 of about 0.3	OD
GSE17517	43 °C -LRB- see heat sample -RRB-	Temp
GSE17517	RNA polymerase subunit β	Anti
GSE17517	Crosslink 	Anti
GSE17517	Crosslinked 	Anti
GSE17517	fraction : input DNA	Gtype
GSE17517	fraction : input DNA , SeqA ChIP supernatant	Gtype
GSE17517	genotype : wildtype	Gtype
GSE17517	genotype : ΔseqA	Gtype
GSE17517	Non-crosslinked DNA	Gtype
GSE17517	RNAP old rep1	Gtype
GSE17517	RNAP old rep2	Gtype
GSE17517	SeqA new deltaSeqA	Gtype
GSE17517	SeqA old deltaSeqA	Gtype
GSE17517	strain : MG1655	Gtype
GSE17517	strain : MG1655 ΔseqA	Gtype
GSE17519	37 ℃	Temp
GSE17519	growth stage : log phase	Gtype
GSE17519	pooled reference RNA	Gtype
GSE17519	SHX-treated Delta dksA Cells	Gtype
GSE17519	SHX-treated Wild-type Cells	Gtype
GSE17519	SHX-treated Wild-type Cells Replicate 1	Gtype
GSE17519	SHX-treated Wild-type Cells Replicate 2	Gtype
GSE17519	SHX-treated Wild-type	Gtype
GSE17519	strain : MG1655 delta lac	Gtype
GSE17519	strain : MG1655 delta lac delta dksA	Gtype
GSE17519	strain : MG1655 delta lac + MG1655 delta lac delta dksA	Gtype
GSE17519	treatment : 0.5 mg	Gtype
GSE17519	treatment : No treatment	Gtype
GSE17519	Pooled RNA from mixture of the same amount of wt , wt	Gtype
GSE17568	Wild-type Cells	Gtype
GSE17568	Wild-type Cells Replicate 1	Gtype
GSE17568	Wild-type Cells Replicate 2	Gtype
GSE17568	Biotinylated GST protein	Gtype
GSE17568	GSH-sepharose 4b purification	Gtype
GSE17568	protein : GST expressed in E. coli BL21 -LRB- DE3 -RRB- from pGEX-4T-3	Gtype
GSE17568	strain : EDL 933	Gtype
GSE17568	30 min after shift to thymineless medium	Gtype
GSE17853	TLD-15-rep1 	O
GSE17853	TLD-15-rep2 	O
GSE17853	TLD-30-rep1 	O
GSE17853	TLD-30-rep2 	O
GSE17853	TLD-45-rep1 	O
GSE17853	TLD-45-rep2 	O
GSE17853	TLD-60-rep1 	O
GSE17853	TLD-60-rep2 	O
GSE17853	TLD-90-rep1 	O
GSE17853	TLD-90-rep2 	O
GSE17853	TLM-15 	O
GSE17853	TLM-30 	O
GSE17853	TLM-45 	O
GSE17853	TLM-60 	O
GSE17853	TLM-90 	O
GSE17991	H7 EDL933 in LB	Gtype
GSE17991	strain : 86-24	Gtype
GSE17991	strain : EDL933	Gtype
GSE17991	fresh MOPS minimal medium	Med
GSE19879	stress experiment	Gtype
GSE19879	Oxidative stress 200 ug	Gtype
GSE19879	treatment group : cold stress	Gtype
GSE19879	treatment group : control	Gtype
GSE19879	treatment group : heat stress	Gtype
GSE19879	treatment group : lactose shift	Gtype
GSE19879	treatment group : oxidative stress	Gtype
GSE19879	treatment time : T10 : 210 min after stress	Gtype
GSE19879	treatment time : T11 : 235 min after stress	Gtype
GSE19879	treatment time : T12 : 260 min after stress	Gtype
GSE19879	treatment time : T1 : OD 0.3	Gtype
GSE19879	treatment time : T1 : OD 0.5	Gtype
GSE19879	treatment time : T2 : OD 0.5	Gtype
GSE19879	treatment time : T2 : OD 0.6	Gtype
GSE19879	treatment time : T3 : 10 min	Gtype
GSE19879	treatment time : T3 : 10 min after stress	Gtype
GSE19879	treatment time : T3 : OD 0.6	Gtype
GSE19879	treatment time : T3 : OD 0.7	Gtype
GSE19879	treatment time : T4 : 10 min after growth lag	Gtype
GSE19879	treatment time : T4 : 10 min after stress	Gtype
GSE19879	treatment time : T4 : 20 min	Gtype
GSE19879	treatment time : T4 : 20 min after stress	Gtype
GSE19879	treatment time : T5 : 20 min after growth lag	Gtype
GSE19879	treatment time : T5 : 20 min after stress	Gtype
GSE19879	treatment time : T5 : 30 min	Gtype
GSE19953	treatment time : T5 : 30 min after stress	Gtype
GSE19953	treatment time : T6 : 30 min after growth lag	Gtype
GSE19953	treatment time : T6 : 30 min after stress	Gtype
GSE19953	treatment time : T6 : 40 min	Gtype
GSE19953	treatment time : T6 : 40 min after stress	Gtype
GSE19953	treatment time : T7 : 40 min after growth lag	Gtype
GSE19953	treatment time : T7 : 40 min after stress	Gtype
GSE19953	treatment time : T7 : 50 min	Gtype
GSE19953	treatment time : T7 : 50 min after stress	Gtype
GSE20305	treatment time : T8 : 90 min	Gtype
GSE20305	treatment time : T8 : 90 min after stress	Gtype
GSE20305	treatment time : T9 : 150 min after stress	Gtype
GSE20305	bile +1	Gtype
GSE20305	bile +2	Gtype
GSE20305	bile +3	Gtype
GSE20305	ctrl1 	Gtype
GSE20305	ctrl2 	Gtype
GSE20305	ctrl3 	Gtype
GSE20305	E.coli O157 : H7 in LB	Gtype
GSE20305	LB ; 0.8 % bile salts	Gtype
GSE20305	mid-log phase	Gtype
GSE20305	Hot phenol extraction of total RNA .	Gtype
GSE20305	strain : strain O157 : H7	Gtype
GSE20305	serotype : o157 : H7 clade 2	Gtype
GSE20305	, stx 1 and 2	Supp
GSE20305	serotype : o157 : H7 clade 2 , stx 2	Gtype
GSE20305	serotype : o157 : H7 clade 8 , stx 2	Gtype
GSE20305	serotype : o157 : H7 clade 8 , stx 2 and 2c	Gtype
GSE20305	strain TW02883	Phase
GSE20305	strain TW02883	Phase
GSE20305	strain TW04863	Phase
GSE20305	strain TW07591	Phase
GSE20305	strain TW07937	Phase
GSE20305	strain TW07961	Phase
GSE20305	strain TW07961	Phase
GSE20305	strain TW08030	Phase
GSE20305	strain TW08609	Phase
GSE20305	strain TW08609	Phase
GSE20305	strain TW08610	Phase
GSE20305	strain TW08623	Phase
GSE20305	strain TW08635	Phase
GSE20305	strain TW08635	Phase
GSE20305	strain TW09098	Phase
GSE20305	strain TW09098	Phase
GSE20305	strain TW09189	Phase
GSE20305	strain TW10012	Phase
GSE20305	strain TW10045	Phase
GSE20305	strain TW10045	Phase
GSE20305	strain TW11028	Phase
GSE20305	strain TW11029	Phase
GSE20305	strain TW11029	Phase
GSE20305	strain TW11032	Phase
GSE20305	strain TW11032	Phase
GSE20305	strain TW11037	Phase
GSE20305	strain TW11110	Phase
GSE20305	strain TW11110	Phase
GSE20305	strain TW11185	Phase
GSE20305	strain TW11185	Phase
GSE20305	strain TW11308	Phase
GSE20305	strain TW11308	Phase
GSE20305	strain TW14279	Phase
GSE20305	strain TW14279	Phase
GSE20305	strain TW14313	Phase
GSE20305	strain TW14359	Phase
GSE20305	independent biological replicate of its group -LRB- n = 6 -RRB-	Gtype
GSE20305	Stx + Sample ; where the biological replicate -LRB- Sample -RRB-	Gtype
GSE20305	the MAANOVA package -LRB- version 0.98-8 -RRB- in R software -LRB- version 2.2.1 -RRB- . This model allows independent consideration of the effect of ` Clade ' -LRB- clade divergence -RRB- and ` Stx ' -LRB- stx type	Gtype
GSE20305	Stx ' interaction effect to examine the combined effect of clade and stx type on differences in gene expression among O157 : H7 strains	Gtype
GSE20305	Leu t = 0	Gtype
GSE20305	Leu t = 0 total	Gtype
GSE20305	Leu t = 17	Gtype
GSE20305	Leu t = 17 total	Gtype
GSE20305	Leu t = 2 total	Gtype
GSE20305	Leu t = 32	Gtype
GSE20305	Leu t = 32 total	Gtype
GSE20305	Leu t = 7	Gtype
GSE20305	Leu t = 7 total	Gtype
GSE20305	Bear feces isolate B3	Gtype
GSE20305	Bear feces isolate B5	Gtype
GSE20305	Cattle feces isolate C1A	Gtype
GSE20305	Cattle feces isolate C4A	Gtype
GSE20305	Cattle feces isolate C6D	Gtype
GSE20305	Human I versus MG1655 technical replicate 1	Gtype
GSE20305	Human sewage isolate H1	Gtype
GSE20305	Human sewage isolate H2	Gtype
GSE20305	Human sewage isolate H3	Gtype
GSE20305	background ratio > 1.5 and overall intensity > 350 in the reference channel and an intensity : background ratio of > 1.0 in the experimental channel	Gtype
GSE20305	strain : Bear feces isolate B1	Gtype
GSE20305	strain : Bear feces isolate B3	Gtype
GSE20305	strain : Bear feces isolate B5	Gtype
GSE20305	strain : Cattle feces isolate C1A	Gtype
GSE20305	strain : Cattle feces isolate C4A	Gtype
GSE20305	strain : Cattle feces isolate C6D	Gtype
GSE20305	strain : Deer feces isolate D1	Gtype
GSE20305	strain : Deer feces isolate W6A	Gtype
GSE20305	strain : E. coli K12 MG1655	Gtype
GSE20305	strain : Human sewage isolate H1	Gtype
GSE20305	strain : Human sewage isolate H2	Gtype
GSE20380	strain : Human sewage isolate H3	Gtype
GSE20380	RNA-Seq 	O
GSE20380	count before the logarithmic conversion to avoid an undefined logarithm of 0 . The lifetime was determined from the inverse of the slope of a linear fit to the logarithmic values	Gtype
GSE20380	strain : DY330 -LRB- W3110 -RRB-	Gtype
GSE20380	time point 0	Gtype
GSE20380	time point 2	Gtype
GSE20380	time point 4	Gtype
GSE20380	time point 6	Gtype
GSE20380	time point 8	Gtype
GSE20380	treatment group : rifampicin time point 0	Gtype
GSE20397	treatment group : rifampicin time point 2	Gtype
GSE20397	treatment group : rifampicin time point 4	Gtype
GSE20397	treatment group : rifampicin time point 6	Gtype
GSE20397	treatment group : rifampicin time point 8	Gtype
GSE20397	10 min	Supp
GSE20397	10 min -LRB- additional -RRB-	Gtype
GSE20397	15 min	Supp
GSE20397	15 min -LRB- additional -RRB-	Gtype
GSE20397	5 min	Supp
GSE20397	5 min -LRB- additional -RRB-	Gtype
GSE20397	control 	Gtype
GSE20397	control -LRB- additional -RRB-	Med
GSE20397	Cells grew in MOPS minimal medium	Med
GSE20397	E. coli MG1655 PhoB knock-out strain grows under phosphate starvation condition	Gtype
GSE20397	E. coli MG1655 wildtype strain grows under phosphate starvation condition	Gtype
GSE20397	genotype 	O
GSE20397	PhoB knock-out strain , rep1	Gtype
GSE20397	PhoB knock-out strain , rep2	Gtype
GSE20397	strain : MG1655	Gtype
GSE20397	Wildtype strain , rep1	Gtype
GSE20397	wildtype strain , rep2	Gtype
GSE20397	E4 + O2 1	Supp
GSE20397	E4 + O2 2	Supp
GSE20397	Respiratory defecient E. coli mutant -LRB- ECOM4 -RRB- , M9 media	Gtype
GSE20397	strain : ECOM4	Gtype
GSE20397	K-12 MG1655	Gtype
GSE20397	WT +	Gtype
GSE20397	O2 1	Supp
GSE20397	WT +	Gtype
GSE20397	O2 2	Supp
GSE20397	Cells grew in MOPS minimal medium	Med
GSE20397	MG1655 wild type strain	Gtype
GSE20397	genotype 	O
GSE20397	strain : MG1655	Gtype
GSE20397	% CO2 -LRB- EHEC strain : 86-24 -RRB-	Gtype
GSE20397	% CO2 , static -LRB- unstressed -RRB-	Gtype
GSE20397	ehec strain : 86-24	Gtype
GSE20397	Trizol -LRB- Invitrogen -RRB-	Gtype
GSE20397	IVT-RNA _ sigma70-1	Gtype
GSE20397	IVT-RNA _ sigma70-2	Gtype
GSE20397	IVT-RNA _ sigmaS	Gtype
GSE20397	IVT-RNA _ sigmaS-2	Gtype
GSE20397	sample type : cDNA produced by RT of RNA	Gtype
GSE20397	sample type : cDNA produced by RT of RNA	Gtype
GSE20397	high QC -LRB- quality control -RRB- value > 0.1 , good flag	Gtype
GSE2065	growth mode : planktonic culture in annular reactor	Gtype
GSE2065	growth time : 7-day	Gtype
GSE2065	K-12 PHL644	Gtype
GSE2065	treatment : non-sorted	Gtype
GSE21115	mouse kidney on day 2 post infection	Gtype
GSE21115	cDNA made from strain PC1012 -LRB- marArobsoxS -RRB- extracted from mouse kidney on day 2 post infection	Gtype
GSE21115	KMD 1	Supp
GSE21115	PC 1	Supp
GSE21115	strain : KMD	Gtype
GSE21115	strain : PC1012	Gtype
GSE21115	tissue source : kidney from CD-1 mice	Gtype
GSE21115	Control 	Med
GSE21115	WT _ 100uM _ KCN _ Sample1 _ TechRep2	O
GSE21115	WT _ 100uM _ KCN _ Sample2 _ TechRep1	O
GSE21115	WT _ 100uM _ KCN _ Sample2 _ TechRep2	O
GSE21115	WT _ 100uM _ KCN _ Sample3 _ TechRep1	O
GSE21115	WT _ 100uM _ KCN _ Sample3 _ TechRep2	O
GSE21115	WT _ 100uM _ KCN _ Sample4 _ TechRep1	O
GSE21115	WT _ 100uM _ KCN _ Sample4 _ TechRep2	O
GSE21115	strain : BW25113	Gtype
GSE21115	Untreated 	O
GSE21115	Astat _ chemostat	Gtype
GSE21115	A-stat , specific growth rate 0.48 1	Gtype
GSE21115	chemostat , specific growth rate 0.51 1	Gtype
GSE21115	cultivation : continuous cultivation , A-stat	Gtype
GSE21115	cultivation : continuous cultivation , chemostat	Gtype
GSE21115	specific growth rate 0.11 1	Gtype
GSE21115	specific growth rate 0.21 1	Gtype
GSE21115	specific growth rate 0.26 1	Gtype
GSE21115	specific growth rate 0.31 1	Gtype
GSE21115	specific growth rate 0.36 1	Gtype
GSE21115	specific growth rate 0.40 1	Gtype
GSE21115	specific growth rate 0.48 1	Gtype
GSE21341	Escherichia coli DH5 -LSB- alpha -RSB-	Gtype
GSE21341	equal ratio -LRB- 500ng each -RRB-	Gtype
GSE21341	Genomic DNA of Escherichia coli DH5α	Gtype
GSE21341	only non-degraders in equal ratio	Gtype
GSE21341	Genomic DNA of mixed culture -LRB- Degraders : NM-05 , IITR-02 , RHA1 ; Non-degraders : DH5α , BL21 and K12 in equal ratio -RRB-	Gtype
GSE21341	isolation source : Mixed culture	Gtype
GSE21341	isolation source : Pure culture	Gtype
GSE21341	Rhodococcus jostii RHA1	Gtype
GSE2140	The Sphingomonas sp. strain NM-05 used in the study is a known degrader of γ-hexachlorocyclohexane -LRB- γ-HCH	Gtype
GSE2140	The Sphingomonas sp. strain NM-05 used in the study is a known degrader of γ-hexachlorocyclohexane -LRB- γ-HCH	Gtype
GSE2140	Escherichia coli ptsN mutant strain	Gtype
GSE2140	Escherichia coli wild type strain	Gtype
GSE2140	genotype 	Gtype
GSE2140	ptsN mutant replicate 1	Gtype
GSE2140	ptsN mutant replicate 2	Gtype
GSE21820	to the manufacturer 's instruction	Gtype
GSE21820	10 % Luria broth	Gtype
GSE21820	culture system : static petri dish -LRB- disposable -RRB-	Gtype
GSE21820	culture temperature : room temperature -LRB- 20 C -RRB-	Gtype
GSE21820	culture time : 18 h	Gtype
GSE21820	high QC -LRB- quality control -RRB- value > 0.1 , good flag	Gtype
GSE21839	10 % Luria broth	Gtype
GSE21839	culture temperature : room temperature -LRB- 20 C -RRB-	Gtype
GSE21839	culture time : 18 h	Gtype
GSE21839	high QC -LRB- quality control -RRB- value > 0.1 , good flag	Gtype
GSE21856	10 % Luria broth	Gtype
GSE21856	culture system : static petri dish -LRB- disposable -RRB-	Gtype
GSE22060	culture temperature : room temperature -LRB- 20 C -RRB-	Gtype
GSE22060	culture time : 18 h	Gtype
GSE22060	high QC -LRB- quality control -RRB- value > 0.1 , good flag	Gtype
GSE22207	FLAG antibody	Gtype
GSE22207	RNAP beta subunit antibody	Gtype
GSE22207	ChIP-Seq 	Gtype
GSE22207	-LSB- E-MTAB-332 -RSB- fis early-exponential	Gtype
GSE22207	-LSB- E-MTAB-332 -RSB- fis mid-exponential	Gtype
GSE22207	-LSB- E-MTAB-332 -RSB- H-NS early-exponential	Gtype
GSE22207	-LSB- E-MTAB-332 -RSB- H-NS mid-exponential	Gtype
GSE22207	-LSB- E-MTAB-332 -RSB- H-NS stationary	Gtype
GSE22885	-LSB- E-MTAB-332 -RSB- H-NS transition-to-stationary	Gtype
GSE22885	-LSB- E-MTAB-332 -RSB- rpo delfis mid-exponential	Gtype
GSE22885	-LSB- E-MTAB-332 -RSB- rpo delhns mid-exponential	Gtype
GSE22885	-LSB- E-MTAB-332 -RSB- rpo wt mid-exponential	Gtype
GSE22885	genotype : del-fis	Gtype
GSE22885	genotype : del-hns	Gtype
GSE22885	genotype : fis : : 3xFLAG	Gtype
GSE22885	genotype : hns : : 3xFLAG	Gtype
GSE22885	genotype : wild _ type	Gtype
GSE22885	growth condition : early-exponential	Gtype
GSE22885	growth condition : mid-exponential	Gtype
GSE22885	growth condition : stationary	Gtype
GSE22885	growth condition : transition-to-stationary	Gtype
GSE22885	grow  The E. coli K-12 MG1655 bacterial strains used in this work are the following : E. coli MG1655 -LRB- F	Gtype
GSE22885	: Kanr -RRB- ; MG1655 fis -LRB- fis : : Kanr -RRB- ; MG1655 hns-FLAG -LRB- hns : : 3xFLAG : : Kanr -RRB- ; MG1655 fis-FLAG -LRB- fis : : 3xFLAG : : Kanr -RRB- . Luria-Bertani -LRB- 0.5 % NaCl -RRB- broth and agar -LRB- 15 g	Gtype
GSE23417	material type : whole _ organism	Gtype
GSE23417	rpo , wt , ME	Gtype
GSE23417	K-12 substr .	O
GSE23417	E. coli flhD , A600 = 0.4 on mannose	Gtype
GSE23578	E. coli flhD , A600 = 0.5 on mucus	Gtype
GSE23578	E. coli MG1655star , A600 = 0.4 on mannose	Gtype
GSE23578	E. coli MG1655star , A600 = 0.5 on mucus	Gtype
GSE23578	E. coli wild-type , A600 = 0.2 on mucus	Gtype
GSE23578	E. coli wild-type , A600 = 0.4 on glucose	Gtype
GSE23578	E. coli wild-type , A600 = 0.4 on mannose	Gtype
GSE23578	E. coli wild-type , A600 = 0.5 on mucus	Gtype
GSE23578	flhD-glucose 	Substrain
GSE23578	flhD-mannose 	Substrain
GSE23578	flhD-mucus-P1 	Substrain
GSE23578	flhD-mucus-P2 	Substrain
GSE23578	genotype 	Substrain
GSE23578	MG1655star-glucose 	Substrain
GSE23578	MG1655star-mannose 	Substrain
GSE23578	MG1655star-mucus-P1 	Substrain
GSE23578	MG1655star-mucus-P2 	Substrain
GSE23578	affy Version : 1.8.1 Date : 2005-09-03 ,	Gtype
GSE23578	WT-glucose-Rep1 	O
GSE23578	WT-glucose-Rep2 	O
GSE23578	WT-mannose 	O
GSE23578	WT-mucus-P1 	O
GSE23578	WT-mucus-P2 	O
GSE25601	INTENSITY -RRB- are zero , assign the value null .	Gtype
GSE25601	Calculate the value of log2 ratio -LRB- Reference	Gtype
GSE25601	Genomic DNA purified from wild type bacteri	Gtype
GSE25601	Genomic DNA purified from wild type bacteria	Gtype
GSE25601	None 	O
GSE25601	strain : 173150	Gtype
GSE25601	strain : 174750	Gtype
GSE25601	strain : 174900	Gtype
GSE25601	strain : 178200	Gtype
GSE25601	strain : 178850	Gtype
GSE25601	strain : 178900	Gtype
GSE25601	strain : 179100	Gtype
GSE25601	strain : 179550	Gtype
GSE25601	strain : 180050	Gtype
GSE25601	strain : 180200	Gtype
GSE25601	strain : 180600	Gtype
GSE25601	strain : 2-1	Gtype
GSE25601	strain : 214-4	Gtype
GSE25601	strain : 2230	Gtype
GSE25601	strain : 229-1	Gtype
GSE25601	strain : 278485-1	Gtype
GSE25601	strain : 292-1	Gtype
GSE25601	strain : 350C1A	Gtype
GSE25601	strain : 42-1 C1	Gtype
GSE25601	strain : ARG-2	Gtype
GSE25601	strain : ARG-3	Gtype
GSE25601	strain : B2C	Gtype
GSE25601	strain : B7A	Gtype
GSE25601	strain : BCE001 , MS16	Gtype
GSE25601	strain : BCE002 , MS12	Gtype
GSE25601	strain : BCE003 , DS5	Gtype
GSE25601	strain : BCE005 , MS23	Gtype
GSE25601	strain : BCE007	Gtype
GSE25601	strain : BCE007 , MS11	Gtype
GSE25601	strain : BCE008 _ MS1	Gtype
GSE25601	strain : BCE008 , MS13	Gtype
GSE25601	strain : BCE011 , DS3	Gtype
GSE25601	strain : BCE013 , DS1	Gtype
GSE25601	strain : BCE018 , DS6	Gtype
GSE25601	strain : BCE019 , MS16	Gtype
GSE25601	strain : BCE021 , DS7	Gtype
GSE25601	strain : BCE022DS6	Gtype
GSE25601	strain : BCE035 , DS6	Gtype
GSE25601	strain : BCE035 , MS8	Gtype
GSE25601	strain : BCE039 , DS2	Gtype
GSE25601	strain : BCE039 , MS13	Gtype
GSE25601	strain : BCE041 , MS11	Gtype
GSE25601	strain : BCE046 , DS2	Gtype
GSE25601	strain : BCE046 , DS7	Gtype
GSE25601	strain : BCE046 , MS16	Gtype
GSE25601	strain : BCE049 , DS3	Gtype
GSE25601	strain : BCE049 , MS9	Gtype
GSE25601	strain : BCE054 , DS4	Gtype
GSE25601	strain : BCE054 , MS24	Gtype
GSE25601	strain : BCE055 , DS1	Gtype
GSE25601	strain : BCE058 , MS13	Gtype
GSE25601	strain : BCE061 , DS1	Gtype
GSE25601	strain : BCE062 , DS2	Gtype
GSE25601	strain : BCE062 , MS24	Gtype
GSE25601	strain : BCE063 , DS4	Gtype
GSE25601	strain : BCE063 , MS14	Gtype
GSE25601	strain : BCE066 , DS5	Gtype
GSE25601	strain : BCE068 , MS10	Gtype
GSE25601	strain : BCE068 , MS23	Gtype
GSE25601	strain : BCE069 , DS2	Gtype
GSE25601	strain : BCE069 , MS15	Gtype
GSE25601	strain : BCE069 , MS9	Gtype
GSE25601	strain : BCE129 , DS2	Gtype
GSE25601	strain : C-34666	Gtype
GSE25601	strain : C-35134	Gtype
GSE25601	strain : C-35209	Gtype
GSE25601	strain : C-35213	Gtype
GSE25601	strain : C-35605	Gtype
GSE25601	strain : C-35662	Gtype
GSE25601	strain : C-35776	Gtype
GSE25601	strain : C-35959	Gtype
GSE25601	strain : C-36255	Gtype
GSE25601	strain : CFT073	Gtype
GSE25601	strain : cocar 07-043	Gtype
GSE25601	strain : cocar 07-40	Gtype
GSE25601	strain : cosin 07-14	Gtype
GSE25601	strain : cosin 07-36	Gtype
GSE25601	strain : cosin 07-61	Gtype
GSE25601	strain : cosin 07-88	Gtype
GSE25601	strain : cosin 07-92	Gtype
GSE25601	strain : D02-2	Gtype
GSE25601	strain : DS168-1	Gtype
GSE25601	strain : DS26-1	Gtype
GSE25601	strain : E1392	Gtype
GSE25601	strain : E1777	Gtype
GSE25601	strain : E1785	Gtype
GSE25601	strain : E1786	Gtype
GSE25601	strain : E1787	Gtype
GSE25601	strain : E1788	Gtype
GSE25601	strain : E1789	Gtype
GSE25601	strain : E1790	Gtype
GSE25601	strain : E1791	Gtype
GSE25601	strain : E1792	Gtype
GSE25601	strain : E20738A	Gtype
GSE25601	strain : E24377A	Gtype
GSE25601	strain : E2528C1	Gtype
GSE25601	strain : E7473	Gtype
GSE25601	strain : E7476A	Gtype
GSE25601	strain : E8775	Gtype
GSE25601	strain : E9034A	Gtype
GSE25601	strain : ETEC 10	Gtype
GSE25601	strain : ETEC 18	Gtype
GSE25601	strain : ETEC 8	Gtype
GSE25601	strain : ETP05-002	Gtype
GSE25601	strain : ETP05-003	Gtype
GSE25601	strain : ETP05-007	Gtype
GSE25601	strain : ETP05-008	Gtype
GSE25601	strain : ETP05-009	Gtype
GSE25601	strain : ETP05-010	Gtype
GSE25601	strain : ETP05-011	Gtype
GSE25601	strain : ETP05-012	Gtype
GSE25601	strain : ETP05-015	Gtype
GSE25601	strain : ETP05-016	Gtype
GSE25601	strain : ETP05-017	Gtype
GSE25601	strain : ETP05-019	Gtype
GSE25601	strain : ETP05-020	Gtype
GSE25601	strain : ETP05-026	Gtype
GSE25601	strain : ETP05-035	Gtype
GSE25601	strain : ETP05-038	Gtype
GSE25601	strain : ETP05-039	Gtype
GSE25601	strain : ETP05-044	Gtype
GSE25601	strain : ETP05-046	Gtype
GSE25601	strain : ETP05-047	Gtype
GSE25601	strain : ETP05-050	Gtype
GSE25601	strain : ETP98004	Gtype
GSE25601	strain : ETP98015	Gtype
GSE25601	strain : ETP98028	Gtype
GSE25601	strain : ETP98038	Gtype
GSE25601	strain : ETP98042	Gtype
GSE25601	strain : ETP98053	Gtype
GSE25601	strain : ETP98056	Gtype
GSE25601	strain : ETP98061	Gtype
GSE25601	strain : ETP98062	Gtype
GSE25601	strain : ETP98066	Gtype
GSE25601	strain : ETP98068	Gtype
GSE25601	strain : ETP98073	Gtype
GSE25601	strain : ETP98097	Gtype
GSE25601	strain : ETP98103	Gtype
GSE25601	strain : ETP98105	Gtype
GSE25601	strain : ETP98109	Gtype
GSE25601	strain : ETP98111	Gtype
GSE25601	strain : ETP98112	Gtype
GSE25601	strain : ETP98114	Gtype
GSE25601	strain : ETP98115	Gtype
GSE25601	strain : F5656-C1	Gtype
GSE25601	strain : F595C	Gtype
GSE25601	strain : HS	Gtype
GSE25601	strain : ICDDR , B _ p1	Gtype
GSE25601	strain : ICDDR , B _ p10	Gtype
GSE25601	strain : ICDDR , B _ p11	Gtype
GSE25601	strain : ICDDR , B _ p12	Gtype
GSE25601	strain : ICDDR , B _ p13	Gtype
GSE25601	strain : ICDDR , B _ p2	Gtype
GSE25601	strain : ICDDR , B _ p4	Gtype
GSE25601	strain : ICDDR , B _ p5	Gtype
GSE25601	strain : ICDDR , B _ p7	Gtype
GSE25601	strain : LSN02-012560	Gtype
GSE25601	strain : LSN03-016011	Gtype
GSE25601	strain : M408C1	Gtype
GSE25601	strain : M424C1	Gtype
GSE25601	strain : MG1655	Gtype
GSE25601	strain : NN-34-1-3	Gtype
GSE25601	strain : NR-12	Gtype
GSE25601	strain : O157 : h7	Gtype
GSE25601	strain : O63 : nm	Gtype
GSE25601	strain : O78 : h11	Gtype
GSE25601	strain : PE360	Gtype
GSE25601	strain : PUTI O26 UMN O26	Gtype
GSE25601	strain : sPRH-20	Gtype
GSE25601	strain : sPRH-21	Gtype
GSE25601	strain : sPRH-25	Gtype
GSE25601	strain : sPRH-372	Gtype
GSE25601	strain : sPRH-403	Gtype
GSE25601	strain : sPRH-414	Gtype
GSE25601	strain : sPRH-418	Gtype
GSE25601	strain : sPRH-420	Gtype
GSE25601	strain : sPRH-421	Gtype
GSE25601	strain : sPRH-443	Gtype
GSE25601	strain : sPRH-445	Gtype
GSE25601	strain : sPRH-450	Gtype
GSE25601	strain : sPRH-604	Gtype
GSE25601	strain : sPRH-605	Gtype
GSE25601	strain : sPRH-606	Gtype
GSE25601	strain : sPRH-609	Gtype
GSE25601	strain : sPRH-610	Gtype
GSE25601	strain : sPRH-612	Gtype
GSE25601	strain : sPRH-613	Gtype
GSE25601	strain : TW03439	Gtype
GSE25601	strain : TW03452	Gtype
GSE25601	strain : TW03574	Gtype
GSE25601	strain : TW03576	Gtype
GSE25601	strain : TW03585	Gtype
GSE25601	strain : TW03741	Gtype
GSE25601	strain : WS 0115A	Gtype
GSE25601	strain : WS1896A	Gtype
GSE25601	strain : WS1896 A-1	Gtype
GSE25601	strain : WS 1933D	Gtype
GSE25601	strain : WS2068A	Gtype
GSE25601	strain : WS 2173A	Gtype
GSE25601	strain : WS2741 A-1	Gtype
GSE25601	strain : WS3080A	Gtype
GSE25601	strain : WS 3294A	Gtype
GSE25601	strain : WS 3572 A-1	Gtype
GSE25601	strain : WS 3596 A-4	Gtype
GSE25601	strain : WS4087 A-1	Gtype
GSE25601	strain : WS4264 A-1	Gtype
GSE25601	strain : WS5874 A-1	Gtype
GSE25601	strain : WS6582 A-1	Gtype
GSE25601	strain : WS 6866B-1	Gtype
GSE25601	strain : WS 7162 A-1	Gtype
GSE25601	strain : WS7179 A-2	Gtype
GSE25601	growth condition : LB broth alone -LRB- control -RRB-	Gtype
GSE25601	strain : CFT073	Gtype
GSE25601	Comparison cya mutant with wt under glucose-limited conditions -LRB- replicate 1 -RRB-	Gtype
GSE25601	Comparison cya mutant with wt under glucose-limited conditions -LRB- replicate 2 -RRB-	Gtype
GSE25601	Comparison cya mutant with wt under glucose-limited conditions -LRB- replicate 3 -RRB-	Gtype
GSE25601	Comparison rpoS mutant with wt under glucose-limited conditions -LRB- replicate 1 -RRB-	Gtype
GSE25601	Comparison rpoS mutant with wt under glucose-limited conditions -LRB- replicate 2 -RRB-	Gtype
GSE25601	Comparison rpoS mutant with wt under glucose-limited conditions -LRB- replicate 3 -RRB-	Gtype
GSE25601	condition : glucose limited	Gtype
GSE25601	control 	Gtype
GSE25601	cya mutant	Gtype
GSE25601	genotype : cya mutant	Gtype
GSE25601	genotype : rpoS mutant	Gtype
GSE25601	genotype : wild-type	Gtype
GSE25601	rpoS mutant	Gtype
GSE25601	strain : MG1655	Gtype
GSE25601	EDL932 unexposed	Gtype
GSE25601	strain : E.coli O157 : H7 EDL 932	Gtype
GSE25601	antibody : 9E10 Myc tag antibody	Gtype
GSE25601	antibody manufacturer : Upstate	Gtype
GSE25601	antibody : normal mouse IgG	Gtype
GSE25601	genotype : ArgR-8myc	Gtype
GSE25601	genotype : Lrp-8myc	Gtype
GSE25601	genotype : TrpR-8myc	Gtype
GSE25601	treatment : glucose -LRB- 2 g	Gtype
GSE25601	agent : H2O	Gtype
GSE25601	agent : ZnSO4	Gtype
GSE25601	30 mins	Supp
GSE25601	strain : MG1655	Gtype
GSE25601	time : 0 mins	Gtype
GSE25601	time : 10 mins	Gtype
GSE25601	time : 2.5 mins	Gtype
GSE25601	30 mins	Supp
GSE25601	time : 7 mins	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- 0A1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 0A2 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 0B1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 0B2 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 10A1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 10A2 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 10A3 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 10B1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 10B2 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 2.5 A1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 2.5 A2 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 2.5 B1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 2.5 B2 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 30A1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 30A2 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 30B1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 30B2 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 7A1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 7A2 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 7B1 -RRB-	Gtype
GSE25601	Transcriptional profiling of Escherichia coli during a transition from zinc starvation to surfeit -LRB- slide 7B2 -RRB-	Gtype
GSE25601	cell type : bacterial liquid culture	Gtype
GSE25601	extracted molecule : plasmid DNA	Gtype
GSE25601	clustering analysis in MeV -LRB- CAST -RRB-	Gtype
GSE25601	RNA purification -LRB- Qiagen -RRB- as per the manufacturer 's protocol .	Gtype
GSE25601	induce the protein expression	Gtype
GSE25601	catalytically inactive mutant of M.HpyAVIB	Gtype
GSE25601	wild-type M.HpyAVIB	Gtype
GSE25601	Escherichia coli BL21 -LRB- DE3 -RRB-	Gtype
GSE25601	genotype 	Gtype
GSE25601	mutant 	Gtype
GSE25601	wild type	Gtype
GSE25601	antibody : normal mouse IgG -LRB- Upstate -RRB-	Gtype
GSE25601	9E10 Myc tag antibody	Anti
GSE25601	genotype : PurR-8myc	Gtype
GSE25601	growth condition : glucose	Gtype
GSE25601	noRh -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	LP _ noDP -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	LP _ noDP -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	LP _ noDP -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	LP _ noDP -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	noDP -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	noDP -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	noDP -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	LP _ noDP _ noRh -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	noDP -LSB- COPRO-Seq -RSB-	Gtype
GSE25601	LP _ noDP _ noRh -LSB- COPRO-Seq -RSB-	Gtype
GSE25745	LP _ noDP _ noRh -LSB- COPRO-Seq -RSB-	Gtype
GSE25745	LP _ noDP _ noRh -LSB- COPRO-Seq -RSB-	Gtype
GSE25745	noRh -LSB- COPRO-Seq -RSB-	Gtype
GSE25745	noRh -LSB- COPRO-Seq -RSB-	Gtype
GSE25745	noRh -LSB- COPRO-Seq -RSB-	Gtype
GSE25745	32nt barcoded sample and a 36-nt non-barcoded sample -LRB- 29 was selected as the minimum score for 32nt barcoded samples ; 33 was the minimum	Gtype
GSE25745	Bacteroides caccae ATCC 43185	Gtype
GSE25745	Bacteroides ovatus ATCC 8483	Gtype
GSE25745	-LSB- Clostridium -RSB- symbiosum	Gtype
GSE25745	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE25745	m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE25745	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE25745	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE25982	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26017	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26017	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26017	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26017	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26017	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26017	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26017	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26017	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26017	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	D2 _ 7 _ m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26054	m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26187	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26223	D3 _ 7 _ m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26340	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26340	m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26340	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m11 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26589	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m10 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m12 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m13 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m9 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	D4 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	D4 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	D4 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	D4 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	D4 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	Desulfovibrio piger GOR1	Gtype
GSE26687	diet : Mouse was fed a meal of human pureed food in the following concentrations -LRB- g	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E11 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E11 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E11 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E11 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E11 _ 7 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E11 _ 7 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E13 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E13 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E13 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E13 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E13 _ 7 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E13 _ 7 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 6 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 6 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 6 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 6 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 6 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 7 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E15 _ 7 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E17 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E17 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E17 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E17 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E17 _ 7 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E1 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E1 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E1 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E1 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E1 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E1 _ 7 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E1 _ 7 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E19 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E19 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E19 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E19 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E19 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E19 _ 7 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E19 _ 7 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E2 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E2 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E2 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E2 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E2 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E2 _ 7 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E2 _ 7 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E3 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E3 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E3 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E3 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E3 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E3 _ 7 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E3 _ 7 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m1 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E9 _ 7 _ m2 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E9 _ 7 _ m3 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E9 _ 7 _ m4 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E9 _ 7 _ m5 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E9 _ 7 _ m6 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E9 _ 7 _ m7 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	E9 _ 7 _ m8 -LSB- COPRO-Seq -RSB-	Gtype
GSE26687	-LSB- Eubacterium -RSB- rectale ATCC 33656	Gtype
GSE26687	chloroform : isoamyl alcohol	Gtype
GSE26687	chloroform : isoamyl alcohol	Gtype
GSE26687	OTHER 	O
GSE26687	RNA-Seq 	O
GSE26687	rRNA depletion : Genomic DNA	Gtype
GSE26687	sample source : Fecal pellet from a mouse -LRB- c57Bl6 -RRB- colonized with 10-gut bacteria	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet	Gtype
GSE26687	sample source : Fecal pellet from a mouse -LRB- c57Bl6 -RRB- colonized with 8-gut bacteria	Gtype
GSE26687	sample source : Fecal pellet from a mouse -LRB- c57Bl6 -RRB- colonized with 9-gut bacteria	Gtype
GSE26687	37 °C	Temp
GSE26687	First biological repeat 37 °C	Gtype
GSE26687	First biological repeat 50 °C	Gtype
GSE26687	37 °C	Temp
GSE26687	heat sensitivity : resistant	Gtype
GSE26687	heat sensitivity : sensitive	Gtype
GSE26687	Second biological repeat 37 °C	Gtype
GSE26687	Second biological repeat 50 °C	Gtype
GSE26687	strain : AW1 .7	Gtype
GSE26687	strain : GGG10	Gtype
GSE26687	Third biological repeat 37 °C	Gtype
GSE26687	Third biological repeat 50 °C	Gtype
GSE26687	37 °C	Temp
GSE26687	treatment : 50 °C heatshock	Gtype
GSE26687	agent : 0.05 mg	Gtype
GSE26687	agent : control	Gtype
GSE26687	H7 EDL933 in LB	Gtype
GSE26687	H7 EDL933 in LB	Gtype
GSE26687	agent : 0.5 % honey	Gtype
GSE26687	agent : control	Gtype
GSE26687	H7 EDL933 in LB	Gtype
GSE26687	H7 EDL933 in LB	Gtype
GSE26687	the presence of histidine -LRB- 1 mM -RRB-	Gtype
GSE26687	genotype : DH1 ΔhisC : : cat ΔintC : : Ptrc-rfp-tetR-zeocinr ΔgalK : : PtetA-gfp-hisC-kanr	Gtype
GSE26687	genotype : DH1 ΔhisC : : cat ΔintC : : Ptrc-rfp-tetR-zeocinr ΔgalK : : PtetA-gfp-kanr	Gtype
GSE26687	HisC rewired strain exponentially grown in the presence of histidine -LRB- 1 mM -RRB-	Gtype
GSE26687	log10 mRNA concentration -LRB- pM -RRB- data are provided as a supplementary file on the SERIES record .	Gtype
GSE26687	1278-1285 . -RRB- and the thermodynamic model of non-specific binding -LRB- NSB -RRB- on short nucleotide	Gtype
GSE26687	platform _ id design : EcFS _ 1	Gtype
GSE26687	platform _ id design : EcFS _ 2	Gtype
GSE26687	volume of 50µl and the other halve treated similar	Gtype
GSE26687	OD450 of about 0.07	OD
GSE26687	OD450 of about 0.07	OD
GSE26687	OD450 of about 0.07	OD
GSE26687	OD450 of about 0.07	OD
GSE26687	OD450 of about 0.07	OD
GSE26687	OD450 of about 0.07	OD
GSE26687	OD450 of about 0.07	OD
GSE26687	OD450 of about 0.15	OD
GSE26687	genotype : dnaC2	Gtype
GSE26687	genotype : dnaC2 , pMQ430	Gtype
GSE26687	genotype : GATC-cluster : : hisA	Gtype
GSE26687	genotype : GATC-cluster : : srlA	Gtype
GSE26687	genotype : GATC-cluster : : ter	Gtype
GSE26687	genotype : GATC-cluster : : tnaA	Gtype
GSE26687	genotype : wildtype	Gtype
GSE26687	input DNA	Phase
GSE26687	Methylation in 0 min dnaC2 rep1	Gtype
GSE26687	Methylation in 0 min dnaC2 rep2	Gtype
GSE26687	Methylation in 15 min dnaC2 rep1	Gtype
GSE26687	Methylation in 15 min dnaC2 rep2	Gtype
GSE26687	SeqA in 15 min dnaC2 LB	Gtype
GSE26687	SeqA in 15 min dnaC2 rep3	Gtype
GSE26687	SeqA in srlA GATC cluster rep1	Gtype
GSE26687	SeqA in srlA GATC cluster rep2	Gtype
GSE26687	SeqA in ter GATC cluster rep1	Gtype
GSE26687	SeqA in ter GATC cluster rep2	Gtype
GSE26687	SeqA in tnaA GATC cluster rep1	Gtype
GSE26687	SeqA in tnaA GATC cluster rep2	Gtype
GSE26687	strain : MG1655	Gtype
GSE26687	strain : MG1655dnaC2	Gtype
GSE26687	strain : TB16	Gtype
GSE26687	strain : TWx30	Gtype
GSE26687	strain : TWx31	Gtype
GSE26687	strain : TWx34	Gtype
GSE26687	strain : TWx48	Gtype
GSE26687	treatment : control	Gtype
GSE26687	treatment : DpnI digested DNA	Gtype
GSE26687	untreated control	Gtype
GSE26687	285c 	Gtype
GSE26687	Control samples -LRB- 285c	Med
GSE26687	genotype : 285c rpoD mutation	Gtype
GSE26687	Sigma70 LB	Phase
GSE26687	Sigma70 LB-1	Phase
GSE26687	Sigma70 LB-2	Phase
GSE26687	Sigma70 LB-3	Phase
GSE26687	Sigma70 LP	Phase
GSE26687	Sigma70 LP-1	Phase
GSE26687	Sigma70 LP-2	Phase
GSE26687	Sigma70 LP-3	Phase
GSE26687	transformation : empty vector	Gtype
GSE26687	transformation : pSigma70-LB	Gtype
GSE26687	transformation : pSigma70-LP	Gtype
GSE26687	30 C	Gtype
GSE26687	treatment : 42 C	Gtype
GSE26687	CFT073 in K-med	Gtype
GSE26687	CFT073 in NaCl	Gtype
GSE26687	CFT073 in urea	Gtype
GSE26687	CFT073 K-med biological rep 1	Gtype
GSE26687	CFT073 K-med biological rep 2	Gtype
GSE26687	CFT073 K-med biological rep 3	Gtype
GSE26687	CFT073 NaCl biological rep 1	Gtype
GSE26687	CFT073 NaCl biological rep 2	Gtype
GSE26687	CFT073 urea biological rep 1	Gtype
GSE26687	CFT073 urea biological rep 2	Gtype
GSE26687	CFT073 urea biological rep 3	Gtype
GSE26687	growth condition : 25 μl into K-medium	Gtype
GSE26687	growth condition : 50 µl into K-medium +	Gtype
GSE26687	0.3 M NaCl	Supp
GSE26687	growth condition : 75 µl into K-medium + 0.6 M urea	Gtype
GSE26687	Total RNA was extracted by the hot phenol -- chloroform method .	Gtype
GSE26687	Add 100 μl 1 mg	Gtype
GSE26687	Bacterial lysis	Gtype
GSE26687	Column purification	Phase
GSE26687	Data = read.madata -LRB- \ NormInput.txt \ , designfile = \ Designfile1.txt \ , header = TRUE , spotflag = TRUE , metarow = 1 , metacol = 2 , row = 3 , col = 4 , geneID = 5 , pmt = 6 -RRB-	Gtype
GSE26687	Data selection	Gtype
GSE27607	genotype : wild type	Gtype
GSE27607	genotype : ybjN mutant	Gtype
GSE27607	genotype : ybjN over-expression	Gtype
GSE27607	go to the directory :	Gtype
GSE27607	graphics.off -LRB- -RRB-	Med
GSE27607	OD600 of about 0.5-0.8	OD
GSE27607	M9 minimal medium	Gtype
GSE27607	LogData = createData -LRB- Data , n.rep = 1 , log.trans = TRUE -RRB-	Gtype
GSE27607	NormalData = transform.madata -LRB- LogData , method = c -LRB- \ glowess \ -RRB- -RRB-	Gtype
GSE27607	postscript -LRB- file = \ PlotGLOWESS.ps \ -RRB-	Gtype
GSE27607	postscript -LRB- file = \ PlotRawData.ps \ -RRB-	Gtype
GSE27607	riplot -LRB- LogData , onScreen = FALSE -RRB-	Gtype
GSE28144	riplot -LRB- NormalData , onScreen = FALSE -RRB-	Gtype
GSE28144	Sample collection from M9 medium	Gtype
GSE28144	Stage : logarithm phase	Gtype
GSE28144	strain : K12	Gtype
GSE28144	30 s. Place the column	Gtype
GSE28144	write.table -LRB- norm.temp , file = \ Normal _ Data.csv \ , sep =\ , \ , row.names = FALSE , col.names = TRUE , quote = FALSE -RRB-	Gtype
GSE28193	specific growth rate 0.5h-1 0h	Gtype
GSE28193	specific growth rate 0.5h-1 10h	Gtype
GSE28193	specific growth rate 0.5h-1 16h	Gtype
GSE28193	specific growth rate 0.5h-1 20h	Gtype
GSE28193	specific growth rate 0.5h-1 6h	Gtype
GSE28193	specific growth rate 0.5h-1 8h	Gtype
GSE28210	Fed batch high cell density cultivation	Gtype
GSE28210	specific growth rate 0.5h-1 0h	Gtype
GSE28210	specific growth rate 0.5h-1 10h	Gtype
GSE28210	specific growth rate 0.5h-1 16h	Gtype
GSE28210	specific growth rate 0.5h-1 5h	Gtype
GSE28210	specific growth rate 0.5h-1 8h	Gtype
GSE28210	Qiagen RNA extraction kit	Gtype
GSE28210	specific growth rate : 0.5h-1	Gtype
GSE28210	strain : W3110hns ∆ 93-1	Gtype
GSE28210	time post-induction : 0h	Gtype
GSE28210	time post-induction : 10h	Gtype
GSE28210	time post-induction : 16h	Gtype
GSE28210	time post-induction : 20h	Gtype
GSE28210	time post-induction : 5h	Gtype
GSE28210	time post-induction : 6h	Gtype
GSE28210	time post-induction : 8h	Gtype
GSE28210	treatment group : control	Gtype
GSE28210	treatment group : indole treated	Gtype
GSE28210	control 	O
GSE28210	double mutant -LRB- PPK1 and PPX -RRB-	Gtype
GSE28210	exopolyphosphatase -LRB- PPX -RRB- mutant	Gtype
GSE28210	genotype 	Gtype
GSE28210	polyphosphate kinase 1 -LRB- PPK1 -RRB- mutant	Gtype
GSE28210	PPK1-PPX double mutant	Gtype
GSE28210	single mutant in exopolyphosphatase -LRB- PPX -RRB-	Gtype
GSE28280	single mutant in polyphosphate kinase 1 -LRB- PPK1 -RRB-	Gtype
GSE28280	zi = -LRB- Ri -- mean -LRB- R -RRB- -RRB-	Gtype
GSE28280	growth medium : liquid culture	Gtype
GSE28280	P2-08 	Gtype
GSE28280	P2-51 	O
GSE28280	P2-58 	O
GSE28280	P2-66 	O
GSE28280	P2-77 	O
GSE28280	PF2-04 	O
GSE28280	PF2-08 	O
GSE28280	PF2-12 	O
GSE28280	strain : BW25113	Gtype
GSE28280	wild-type 	O
GSE28280	wt or mutant : P2-08	Gtype
GSE28280	wt or mutant : P2-51	Gtype
GSE28280	wt or mutant : P2-58	Gtype
GSE28280	wt or mutant : P2-66	Gtype
GSE28280	wt or mutant : P2-77	Gtype
GSE28280	wt or mutant : PF2-04	Gtype
GSE28280	wt or mutant : PF2-08	Gtype
GSE28280	wt or mutant : PF2-12	Gtype
GSE28280	WT @ 0.8 % But	Gtype
GSE28280	cpxA-ala-1 	Gtype
GSE28280	cpxA-ala-2 	Gtype
GSE28280	cpxA mutant in Ala media	Gtype
GSE28280	cpxA mutant in Gln media	Gtype
GSE28280	cysQ-gln-1 	Gtype
GSE28280	cysQ-gln-2 	Gtype
GSE28280	cysQ mutantin Ala media	Gtype
GSE28280	cysQ mutantin Gln media	Gtype
GSE28280	dnaJ-ala-1 	Gtype
GSE28280	dnaJ-ala-2 	Gtype
GSE28280	dnaJ-gln-1 	Gtype
GSE28280	dnaJ-gln-2 	Gtype
GSE28280	dnaJ mutant in Ala media	Gtype
GSE28280	dnaJ mutant in Gln media	Gtype
GSE28280	gcvT-ala-1 	Substrain
GSE28280	gcvT-ala-2 	Substrain
GSE28280	gcvT mutant in Ala media	Gtype
GSE28280	gcvT mutant in Gln media	Gtype
GSE28280	genotype 	Gtype
GSE28280	hfq-gln-1 	Gtype
GSE28280	hfq-gln-2 	Gtype
GSE28280	hfq mutant in Ala media	Gtype
GSE28280	hfq mutant in Gln media	Gtype
GSE28280	Irp mutant in Ala media	Gtype
GSE28280	Irp mutant in Gln media	Gtype
GSE28280	lrp-gln-1 	O
GSE28280	lrp-gln-2 	O
GSE28280	pgi-ala-1 	O
GSE28280	pgi-ala-2 	O
GSE28280	pgi mutantin Ala media	Gtype
GSE28280	pgi mutantin Gln media	Gtype
GSE28280	strain : AH28	Gtype
GSE28280	strain : ZD1	Gtype
GSE28280	strain : ZD26	Gtype
GSE28280	strain : ZD51	Gtype
GSE28280	strain : ZD56	Gtype
GSE28280	strain : ZD59	Gtype
GSE28280	strain : ZD60	Gtype
GSE28280	strain : ZD8	Gtype
GSE28280	to the manufacturer 's directions except in the last step the RNA	Gtype
GSE28280	wild-type in ala media	Gtype
GSE28280	wild-type in ala media	Gtype
GSE28320	wild-type in gln media	Gtype
GSE28320	wild-type in gln media	Gtype
GSE28320	H7 EDL933 in LB	Gtype
GSE28320	E. coli O157 : H7 EDL933 in LB	Gtype
GSE28320	serotype : O157 : H7	Gtype
GSE28320	strain : EDL933	Gtype
GSE28320	genotype : ethanol-tolerant mutant E1 of IrrE	Gtype
GSE28320	genotype : wild type IrrE	Gtype
GSE28320	mutant E1 , biological rep1	Gtype
GSE28320	mutant E1 , biological rep2	Gtype
GSE28320	mutant E1 , biological rep3	Gtype
GSE28399	strain : DH5a	Gtype
GSE28399	wild type E0 , biological rep1	Gtype
GSE28399	wild type E0 , biological rep2	Gtype
GSE28399	wild type E0 , biological rep3	Gtype
GSE28399	OD600 of 0.7-0.8 -RRB-	OD
GSE28399	genotype : gss mutant	Gtype
GSE28399	genotype : wild type	Gtype
GSE28399	gss-1 	Gtype
GSE28399	gss-2 	Gtype
GSE28399	gss-3 	Gtype
GSE28399	MAS 5.0	Gtype
GSE28399	wild type	Gtype
GSE28399	WT-1 	O
GSE28399	WT-2 	O
GSE28399	WT-3 	O
GSE28399	E. coli K12 strain JM109	Gtype
GSE28399	JM109-3 , biological rep3	Gtype
GSE28630	JM109 GLY-1 , biological rep1	Gtype
GSE28630	JM109 GLY-2 , biological rep2	Gtype
GSE28630	JM109 GLY-3 , biological rep3	Gtype
GSE28630	lower red phenol-chloroform phase , interphase and the colorless upper aqueous phase . Transfer the aqueous phase to a fresh tube . Precipitate RNA from the aqueous phase	Gtype
GSE28630	on-column DNase digestion with RNase-free DNase I -LRB- Qiagen -RRB- to purify the total RNA .	Gtype
GSE28630	treatment : 200 mM glyphosate shock	Gtype
GSE28630	treatment : without salt shock	Gtype
GSE28630	BW25113 mqsR	Phase
GSE28630	cell type : Planktonic	Gtype
GSE28630	genotype 	O
GSE28630	medium : LB	Gtype
GSE28630	K-12 BW25113	Gtype
GSE28630	temp : 37ºC	Gtype
GSE28630	time : 1 h with 20 μg	Gtype
GSE28630	EM1456 wild-type pNM12	Gtype
GSE28630	# 1 + arabinose	Supp
GSE28630	experiment # 115	Gtype
GSE28630	experiment # 116	Gtype
GSE28630	experiment # 203	Gtype
GSE28630	experiment # 204	Gtype
GSE28630	experiment # 205	Gtype
GSE28630	experiment # 206	Gtype
GSE28630	experiment # 303	Gtype
GSE28630	experiment # 305	Gtype
GSE28630	experiment # 306	Gtype
GSE28630	fur mutant pBAD-ryhB	Gtype
GSE28630	# 1 + arabinose	Supp
GSE28630	fur mutant pBAD-ryhB	Gtype
GSE28630	# 2 + arabinose	Supp
GSE28630	fur mutant pNM12	Gtype
GSE28630	# 1 + arabinose	Supp
GSE28630	fur mutant pNM12	Gtype
GSE28630	# 2 + arabinose	Supp
GSE28630	Microarray suite 5.0	Gtype
GSE28630	Strain EM1453 wild-type pBAD-ryhB	Gtype
GSE28630	# 1 + arabinose	Supp
GSE28630	wild-type pBAD-ryhB	Gtype
GSE28630	# 1 + arabinose	Supp
GSE28630	wild-type pBAD-ryhB	Gtype
GSE28630	# 1 + FeSO4 + arabinose	Supp
GSE28630	wild-type pBAD-ryhB	Gtype
GSE28630	# 2 + arabinose	Supp
GSE28630	wild-type pBAD-ryhB	Gtype
GSE28630	# 2 + FeSO4 + arabinose	Supp
GSE28630	wild-type pNM12	Gtype
GSE28630	# 1 + arabinose	Supp
GSE28630	wild-type pNM12	Gtype
GSE28630	# 1 + FeSO4 + arabinose	Supp
GSE28630	wild-type pNM12	Gtype
GSE28630	# 2 + arabinose	Supp
GSE28630	wild-type pNM12	Gtype
GSE28630	# 2 + FeSO4 + arabinose	Supp
GSE28630	N3433 -LRB- rne deletion -RRB- pBADRNE in LB	Gtype
GSE28630	N3433 -LRB- rne deletion -RRB- pBAD-RNE w	Gtype
GSE28630	N3433 -LRB- rne deletion -RRB- pNRNE5	Gtype
GSE28630	N3433 -LRB- rne deletion -RRB- pRNG3	Gtype
GSE28630	N3433 -LRB- rng deletion -RRB- in LB	Gtype
GSE29486	N3433 -LRB- rng deletion -RRB- LB	Gtype
GSE29486	30 C	Supp
GSE29486	N3433 -LRB- wt -RRB- in LB	Gtype
GSE29486	N3433 -LRB- wt -RRB- pPM30 in LB	Gtype
GSE29486	N3433 -LRB- wt -RRB- pRNG3 in LB	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- rne deletion -RRB- pBADRNE in LB	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- rne deletion -RRB- pBAD-RNE w	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- rne deletion -RRB- pNRNE5	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- rne deletion -RRB- pNRNE5	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- rne deletion -RRB- pRNG3	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- rne deletion -RRB- pRNG3	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- rng deletion -RRB- in LB	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- rng deletion -RRB- LB	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- wt -RRB- pRNG3 in LB	Gtype
GSE29486	N3433 -LRB- wt -RRB- vs N3433 -LRB- wt -RRB- pRNG3 in LB	Gtype
GSE29486	VALUE is Log -LRB- base 2 -RRB- of the ratio of the median	Gtype
GSE29486	A10 : LJ110 del pdhr MMAcetat	Gtype
GSE29486	A11 : LJ110 pTM30 MMAcetat	Gtype
GSE29486	A12 : LJ110 pTM30pdhr MMAcetat	Gtype
GSE29486	A1 : LJ110 LBo	Gtype
GSE29486	A2 : LJ110 del pdhr LBo	Gtype
GSE29486	A3 : LJ110 pTM30 LBo	Gtype
GSE29486	A4 : LJ110 pTM30pdhr LBo	Gtype
GSE29486	A5 : LJ110 MMPyruvat	Gtype
GSE29486	A6 : LJ110 del pdhr MMPyruvat	Gtype
GSE29486	A7 : LJ110 pTM30 MMPyruvat	Gtype
GSE29486	A8 : LJ110 pTM30pdhr MMPyruvat	Gtype
GSE29486	A9 : LJ110 MMAcetat	Gtype
GSE29954	B10 : LJ110 del pdhr MMAcetat	Gtype
GSE29954	B11 : LJ110 pTM30 MMAcetat	Gtype
GSE29954	B12 : LJ110 pTM30pdhr MMAcetat	Gtype
GSE29954	B1 : LJ110 LBo	Gtype
GSE29954	B2 : LJ110 del pdhr LBo	Gtype
GSE29954	B3 : LJ110 pTM30 LBo	Gtype
GSE29954	B4 : LJ110 pTM30pdhr LBo	Gtype
GSE29954	B5 : LJ110 MMPyruvat	Gtype
GSE29954	B6 : LJ110 del pdhr MMPyruvat	Gtype
GSE29954	B7 : LJ110 pTM30 MMPyruvat	Gtype
GSE29954	B8 : LJ110 pTM30pdhr MMPyruvat	Gtype
GSE29954	B9 : LJ110 MMAcetat	Gtype
GSE30005	background strain : LJ110	Gtype
GSE30005	genetic modification : empty plasmid -LRB- LJ110	Gtype
GSE30005	genetic modification : PdhR knockout mutant -LRB- LJ110deltapdhR -RRB-	Gtype
GSE30005	genetic modification : PdhR overexpression strain -LRB- LJ110	Gtype
GSE30005	genetic modification : wild type LJ110	Gtype
GSE30005	LJ110 del pdhr LBo	Gtype
GSE30005	LJ110 del pdhr MMAcetat	Gtype
GSE30005	LJ110 del pdhr MMPyruvat	Gtype
GSE30005	LJ110 LBo	Phase
GSE30005	LJ110 MMAcetat	Phase
GSE30005	LJ110 MMPyruvat	Phase
GSE30005	LJ110 pTM30 LBo	Gtype
GSE30005	LJ110 pTM30 MMAcetat	Gtype
GSE30005	LJ110 pTM30 MMPyruvat	Gtype
GSE30005	LJ110 pTM30pdhr LBo	Gtype
GSE30005	LJ110 pTM30pdhr MMAcetat	Gtype
GSE30005	LJ110 pTM30pdhr MMPyruvat	Gtype
GSE30005	MMAcetat 	Gtype
GSE30005	MMPyruvat 	Gtype
GSE30005	RNAeasy 	Gtype
GSE30005	CRE Multi 0uM Rep1 Plasmid	Gtype
GSE30005	CRE Multi 0uM Rep2 Plasmid	Gtype
GSE30005	CRE Multi 100uM Rep1 Plasmid	Gtype
GSE30005	CRE Multi 100uM Rep2 Plasmid	Gtype
GSE30005	CRE Single 100uM Rep1 Plasmid	Gtype
GSE30005	CRE Single 100uM Rep2 Plasmid	Gtype
GSE30005	HEK293T 	O
GSE30005	IFNB Multi SeV0 Rep1 Plasmid	Gtype
GSE30005	IFNB Multi SeV10 Rep1 Plasmid	Gtype
GSE30005	IFNB Single SeV10 Rep1 Plasmid	Gtype
GSE30005	Plasmid pool	Phase
GSE30005	reporter : CRE multi-hit	Gtype
GSE30005	reporter : CRE single-hit	Gtype
GSE30005	reporter : IFNB multi-hit	Gtype
GSE30005	reporter : IFNB single-hit	Gtype
GSE30005	RNA-Seq 	Gtype
GSE30005	sample type : plasmid pool	Gtype
GSE30005	treatment : N	Gtype
GSE30005	0 min	Supp
GSE30005	10 min	Supp
GSE30005	30 min	Supp
GSE30005	60 min	Supp
GSE30345	5 % -LRB- v	Gtype
GSE30345	time : 0 min	Gtype
GSE30345	time : 10 min	Gtype
GSE30345	30 min	Supp
GSE30345	time : 60 min	Gtype
GSE30345	to the manufacturer 's protocol	Gtype
GSE30345	treatment : 5 percent isooctane	Gtype
GSE30345	ppsA mutant 15 min -LRB- 1 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 15 min -LRB- 1 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 1 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 1 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 1 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 1 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 1 hour -LRB- 3 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 1 hour -LRB- 3 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 2 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 2 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 2 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 2 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 2 hour -LRB- 3 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 2 hour -LRB- 3 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 30 min -LRB- 1 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 30 min -LRB- 1 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 3 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 3 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 3 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 3 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 3 hour -LRB- 3 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 3 hour -LRB- 3 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 4 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 4 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 4 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 4 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 4 hour -LRB- 3 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 4 hour -LRB- 3 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 5 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 5 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 5 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 5 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 5 min -LRB- 1 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 5 min -LRB- 1 -RRB- slide 2	Gtype
GSE30345	ppsA mutant 6 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30345	ppsA mutant 6 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30424	ppsA mutant 6 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30424	ppsA mutant 6 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30424	strain BW25113	Phase
GSE30424	Strain BW25113	Phase
GSE30424	Strain BW25113	Phase
GSE30424	strain BW25113 ppsA deletion	Gtype
GSE30441	wild-type 15 min -LRB- 1 -RRB- slide 1	Gtype
GSE30441	wild-type 15 min -LRB- 1 -RRB- slide 2	Gtype
GSE30441	wild-type 15 min -LRB- 2 -RRB- slide 1	Gtype
GSE30441	wild-type 15 min -LRB- 2 -RRB- slide 2	Gtype
GSE30441	wild-type 1 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30441	wild-type 1 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30441	wild-type 1 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30441	wild-type 1 hour -LRB- 3 -RRB- slide 1	Gtype
GSE30679	wild-type 1 hour -LRB- 3 -RRB- slide 2	Gtype
GSE30679	wild-type 2 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30679	wild-type 2 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30679	wild-type 2 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30679	wild-type 2 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30679	wild-type 2 hour -LRB- 3 -RRB- slide 1	Gtype
GSE30679	wild-type 2 hour -LRB- 3 -RRB- slide 2	Gtype
GSE30679	wild-type 30 min -LRB- 1 -RRB- slide 1	Gtype
GSE30679	wild-type 30 min -LRB- 1 -RRB- slide 2	Gtype
GSE30679	wild-type 30 min -LRB- 2 -RRB- slide 1	Gtype
GSE30679	wild-type 30 min -LRB- 2 -RRB- slide 2	Gtype
GSE30679	wild-type 3 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30679	wild-type 3 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30838	wild-type 3 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30838	wild-type 3 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30838	wild-type 3 hour -LRB- 3 -RRB- slide 1	Gtype
GSE30838	wild-type 3 hour -LRB- 3 -RRB- slide 2	Gtype
GSE30838	wild-type 4 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30838	wild-type 4 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30838	wild-type 4 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30838	wild-type 4 hour -LRB- 2 -RRB- slide 2	Gtype
GSE30838	wild-type 4 hour -LRB- 3 -RRB- slide 1	Gtype
GSE30838	wild-type 4 hour -LRB- 3 -RRB- slide 2	Gtype
GSE30838	wild-type 5 hour -LRB- 1 -RRB- slide 1	Gtype
GSE30838	wild-type 5 hour -LRB- 1 -RRB- slide 2	Gtype
GSE30838	wild-type 5 hour -LRB- 2 -RRB- slide 1	Gtype
GSE30838	wild-type 5 hour -LRB- 2 -RRB- slide 2	Gtype
GSE31054	wild-type 5 min -LRB- 1 -RRB- slide 1	Gtype
GSE31054	wild-type 5 min -LRB- 1 -RRB- slide 2	Gtype
GSE31054	wild-type 5 min -LRB- 2 -RRB- slide 1	Gtype
GSE31054	wild-type 5 min -LRB- 2 -RRB- slide 2	Gtype
GSE31054	wild-type 6 hour -LRB- 1 -RRB- slide 1	Gtype
GSE31054	wild-type 6 hour -LRB- 1 -RRB- slide 2	Gtype
GSE31054	wild-type 6 hour -LRB- 2 -RRB- slide 1	Gtype
GSE31054	wild-type 6 hour -LRB- 2 -RRB- slide 2	Gtype
GSE31054	EGS084 	O
GSE3105	EGS212 	O
GSE3105	∆ fadE with overexpression of ` tesA and MlfabH via an IPTG-inudcible promoter	Gtype
GSE3105	∆ fadE with overexpression of ` tesA via an IPTG-inudcible promoter	Gtype
GSE3105	phenotype : normal	Gtype
GSE3105	phenotype : small improvement in methyl ketone production	Gtype
GSE3105	substrain : DH1	Gtype
GSE3105	on-column DNase digestion with the RNase-Free DNase set -LRB- Qiagen -RRB-	Gtype
GSE3105	LB media	Med
GSE3123	LB media	Med
GSE3123	LB media	Med
GSE3123	LB media	Med
GSE3123	LB media	Med
GSE3123	E. coli MG1655 mid-log phase in M9 media	Gtype
GSE31333	10 min	Supp
GSE31333	LBTMP50 _ 120 min	Gtype
GSE31333	30 min	Supp
GSE31333	60 min	Supp
GSE31333	10 min	Supp
GSE31333	M9TMP5 _ 120 min	Gtype
GSE31333	30 min	Supp
GSE31333	60 min	Supp
GSE31333	90 min	Supp
GSE31333	M9TMP5 _ AdAA _ 120 min	Gtype
GSE31333	30 min	Supp
GSE31333	M9TMP5 _ AdAA _ 60 min	Gtype
GSE31333	M9TMP5 _ AdAA _ 90 min	Gtype
GSE31333	30 min	Supp
GSE31333	M9TMP _ AA _ 120 min	Gtype
GSE31333	30 min	Supp
GSE31333	M9TMP _ AA _ 60 min	Gtype
GSE31333	M9TMP _ Ad _ 120 min	Gtype
GSE31333	30 min	Supp
GSE31333	strain : MG1655	Gtype
GSE31333	VALUE is Log -LRB- base 2 -RRB- of the ratio of the median	Gtype
GSE31333	30 C	Supp
GSE31333	30 C	Supp
GSE31982	30 C	Supp
GSE31982	30 C	Supp
GSE31982	MG1655 2 ' post rif	Gtype
GSE31982	MG1655 4 ' post rif	Gtype
GSE31982	MG1655 6 ' post rif	Gtype
GSE31982	MG1655 8 ' post rif	Gtype
GSE31982	0.2 % Glucose	Supp
GSE31982	0.2 % Glucose	Supp
GSE31982	0.2 % Glucose	Supp
GSE32131	VALUE is Log -LRB- base 2 -RRB- of the ratio of the mean	Gtype
GSE32131	VALUE is Log -LRB- base 2 -RRB- of the ratio of the median	Gtype
GSE32131	20 ug total RNA ,10 ug pdN6 \	Gtype
GSE32131	20 ug total ,10 ug pdN6 \	Gtype
GSE32131	accession : U00006	Gtype
GSE3250	Escherichia coli K12 wild-type	Gtype
GSE3250	Wild Type	Gtype
GSE3250	hybridization buffer -LRB- formamide content -RRB- : 0 % formamide	Gtype
GSE3250	hybridization buffer -LRB- formamide content -RRB- : 10 % formamide	Gtype
GSE3250	hybridization buffer -LRB- formamide content -RRB- : 15 % formamide	Gtype
GSE3250	hybridization buffer -LRB- formamide content -RRB- : 20 % formamide	Gtype
GSE3250	hybridization buffer -LRB- formamide content -RRB- : 25 % formamide	Gtype
GSE3250	hybridization buffer -LRB- formamide content -RRB- : 32.5 % formamide	Gtype
GSE3250	hybridization buffer -LRB- formamide content -RRB- : 45 % formamide	Gtype
GSE3250	hybridization buffer -LRB- formamide content -RRB- : 5 % formamide	Gtype
GSE3250	hybridization buffer -LRB- total rna -RRB- : 50 ng	Gtype
GSE3250	hybridization buffer -LRB- total rna -RRB- : 5 ng	Gtype
GSE3250	phenotype : normal	Gtype
GSE3250	growth protocol : heat shock	Gtype
GSE3250	growth protocol : steady growth	Gtype
GSE3250	heat shock response in the minimal medium	Gtype
GSE3250	MDS42 , biological rep 1	Gtype
GSE3250	MDS42 , biological rep 2	Gtype
GSE3250	MDS42 , biological rep 4	Gtype
GSE3250	MDS42 , biological rep 5	Gtype
GSE3250	MDS42 , biological rep 6	Gtype
GSE3250	MDS42 , biological rep 7	Gtype
GSE3250	MDS42 exponentially grown in the minimal medium	Gtype
GSE3250	MDS42 , heat shock , biological rep 1	Gtype
GSE3250	MDS42 , heat shock , biological rep 2	Gtype
GSE3250	the minimal medium	Gtype
GSE3250	on the finite hybridisation -LRB- FH -RRB- model -LRB- Ono et al , 2008 -RRB- and the thermodynamic model of non-specific binding -LRB- NSB -RRB- on short nucleotide	Gtype
GSE3250	strain : MDS42 -LRB- genome reduced -RRB-	Gtype
GSE3250	strain : MG1655 -LRB- parent -RRB-	Gtype
GSE3250	The log10 mRNA concentration -LRB- pM -RRB- data are provided as a supplementary file on the SERIES record .	Gtype
GSE3250	DSP1 _ Total	Gtype
GSE3250	DSP2 _ Total	Gtype
GSE3250	DSP3 _ Total	Gtype
GSE3250	EDC1 _ Total	Gtype
GSE3250	genotype 	O
GSE3250	mid-log phase	Gtype
GSE3250	Harvested by rapid filtration ; DSP treated ex vivo ; Total footprints	Gtype
GSE3250	Harvested by rapid filtration ; EDC treated ex vivo ; Affinity purified TF crosslinked RNC footprints	Gtype
GSE3250	Harvested by rapid filtration ; EDC treated ex vivo ; Total footprints	Gtype
GSE3250	library strategy : Selective ribosome	Gtype
GSE3250	RNA-Seq 	O
GSE3250	strain : MC4100	Gtype
GSE32561	are part of the R	Gtype
GSE32561	Standard hot-phenol method	Gtype
GSE32561	treatment : control	Gtype
GSE32561	genotype : Δ -LRB- yjjP-yjjQ-bglJ -RRB-	Gtype
GSE32561	genotype : Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO	Gtype
GSE32561	genotype : Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB	Gtype
GSE32561	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + ctrl	Gtype
GSE32561	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + ctrl , biological replicate 1	Gtype
GSE32561	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + ctrl , biological replicate 2	Gtype
GSE32561	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + ctrl , biological replicate 4	Gtype
GSE32561	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + pBglJ	Gtype
GSE32561	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + pBglJ , biological replicate 1	Gtype
GSE32561	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + pBglJ , biological replicate 2	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + pBglJ , biological replicate 4	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + pLeuO	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + pLeuO , biological replicate 1	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + pLeuO , biological replicate 2	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- + pLeuO , biological replicate 4	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + ctrl	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + ctrl , biological replicate 1	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + ctrl , biological replicate 2	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + ctrl , biological replicate 3	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + ctrl , biological replicate 4	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + pBglJ	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + pBglJ , biological replicate 1	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + pBglJ , biological replicate 2	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + pBglJ , biological replicate 3	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔleuO + pBglJ , biological replicate 4	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + ctrl	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + ctrl , biological replicate 1	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + ctrl , biological replicate 2	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + ctrl , biological replicate 3	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + ctrl , biological replicate 4	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + pBglJ	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + pBglJ , biological replicate 1	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + pBglJ , biological replicate 2	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + pBglJ , biological replicate 3	Gtype
GSE32562	K12 Δ -LRB- yjjP-yjjQ-bglJ -RRB- ΔrcsB + pBglJ , biological replicate 4	Gtype
GSE32562	overexpression : BglJ	Gtype
GSE32562	overexpression : LeuO	Gtype
GSE32562	plasmid : pKEDR13	Gtype
GSE32562	plasmid : pKESK22	Gtype
GSE32562	plasmid : pKETS1	Gtype
GSE32562	sample id : 1a	Gtype
GSE32562	sample id : 1b	Gtype
GSE32562	sample id : 1c	Gtype
GSE32562	sample id : 1d	Gtype
GSE32562	sample id : 2a	Gtype
GSE32562	sample id : 2b	Gtype
GSE32562	sample id : 2c	Gtype
GSE32562	sample id : 2d	Gtype
GSE32562	sample id : 3a	Gtype
GSE32562	sample id : 3b	Gtype
GSE32562	sample id : 3c	Gtype
GSE32562	sample id : 3d	Gtype
GSE32562	sample id : 4a	Gtype
GSE32562	sample id : 4b	Gtype
GSE32562	sample id : 4c	Gtype
GSE32562	sample id : 4d	Gtype
GSE32562	sample id : 5a	Gtype
GSE32562	sample id : 5b	Gtype
GSE32562	sample id : 5c	Gtype
GSE32562	sample id : 5d	Gtype
GSE32562	sample id : 6a	Gtype
GSE32562	sample id : 6b	Gtype
GSE32562	sample id : 6c	Gtype
GSE32562	sample id : 6d	Gtype
GSE32562	sample id : 7a	Gtype
GSE32562	sample id : 7b	Gtype
GSE32562	sample id : 7c	Gtype
GSE32562	sample id : 7d	Gtype
GSE3265	strain : T175	Gtype
GSE3265	strain : T177	Gtype
GSE3265	strain : T75	Gtype
GSE3265	control , biological rep1 C1	Gtype
GSE3265	control , biological rep1 C2	Gtype
GSE3265	control , biological rep1 C3	Gtype
GSE3265	control , biological rep2 C4	Gtype
GSE3265	control , biological rep2 C5	Gtype
GSE3265	control , biological rep2 C6	Gtype
GSE3267	Experimental , biological rep1 G1	Gtype
GSE3267	Experimental , biological rep1 G2	Gtype
GSE3267	Experimental , biological rep1 G3	Gtype
GSE3267	Experimental , biological rep2 G4	Gtype
GSE3267	Experimental , biological rep2 G5	Gtype
GSE3267	Experimental , biological rep2 G6	Gtype
GSE3267	strain : Escherichia coli	Gtype
GSE33021	M9 minimal complete media	Med
GSE33021	MG1655 rpoHp3 : : lacZ delta lacX74	Gtype
GSE33021	Wild type control -LRB- 0 min -RRB-	Gtype
GSE33021	Wild type control -LRB- 10 min -RRB-	Gtype
GSE33021	Wild type control -LRB- 15 min -RRB-	Gtype
GSE33021	Wild type control -LRB- 20 min -RRB-	Gtype
GSE33021	Wild type control -LRB- 2.5 min -RRB-	Gtype
GSE33021	Wild type control -LRB- 30 min -RRB-	Gtype
GSE33021	Wild type control -LRB- 5 min -RRB-	Gtype
GSE33021	Wild type control -LRB- 60 min -RRB-	Gtype
GSE33021	E. coli -LSB- K-12 MG1655 strain -LRB- U00096 .2 -RRB-	Gtype
GSE33212	U00096 .2	Gversion
GSE33212	RNA-Seq 	O
GSE33212	the same transcription unit that had the same unique tag	Gtype
GSE33212	log phase under furfural stress	Gtype
GSE33212	Furfural-tolerant IrrE mutant F1-37 , biological rep1	Gtype
GSE33212	Furfural-tolerant IrrE mutant F1-37 , biological rep2	Gtype
GSE33212	Furfural-tolerant IrrE mutant F1-37 , biological rep3	Gtype
GSE33212	genotype : furfural-tolerant mutant F1-37 of IrrE	Gtype
GSE33212	genotype : wild type IrrE	Gtype
GSE33212	strain : DH5a	Gtype
GSE33212	Wild-type IrrE , biological rep1	Gtype
GSE33212	Wild-type IrrE , biological rep2	Gtype
GSE33212	Wild-type IrrE , biological rep3	Gtype
GSE33671	sham _ sinusoidal _ interm _ 15h _ rep3	Gtype
GSE34023	growth condition : steady-state continuous cultivation -LRB- dilution rate of 0.4 h-1 -RRB- , aerobic	Gtype
GSE34023	treatment duration : 10 min	Gtype
GSE34023	treatment duration : 15 h	Gtype
GSE34023	treatment duration : 2.5 h	Gtype
GSE34023	treatment duration : 8 min	Gtype
GSE34023	treatment duration : none	Gtype
GSE34023	treatment : sham-treated power line intermittent -LRB- 2 min on , 4 min off -RRB- magnetic field	Gtype
GSE34023	treatment : sham-treated sinusoidal continous magnetic field	Gtype
GSE34023	treatment : sham-treated sinusoidal intermittent -LRB- 2 min on , 4 min off -RRB- magnetic field	Gtype
GSE34023	treated power line intermittent -LRB- 2 min on , 4 min off -RRB- magnetic field	Gtype
GSE34023	treated sinusoidal continous magnetic field	Gtype
GSE34023	treated sinusoidal intermittent -LRB- 2 min on , 4 min off -RRB- magnetic field	Gtype
GSE34023	treatment : unexposed , left chamber	Gtype
GSE34023	treatment : unexposed , right chamber	Gtype
GSE34023	medium : MOPS	Gtype
GSE34023	OmpFrecode _ f.wig : NC _ 000913.2	Gtype
GSE34023	RNA-Seq 	O
GSE34023	strain : BJW9 w	Gtype
GSE34023	treatment : Ribosome-protected mRNA , Ribosome footprint sample digested with 60 units of micrococcal nuclease per A260 absorbance	Gtype
GSE34023	aerobic reference	Gtype
GSE34023	anaerobic reference	Air
GSE34023	Genetic background : wtGrowth conditions : aerobic	Gtype
GSE34023	anaerobic plus NO2	Air
GSE34023	plus NO3	Supp
GSE34275	narXLP rep 1	Gtype
GSE34275	narXLP rep 2	Gtype
GSE34275	narXL rep 1	Gtype
GSE34275	narXL rep 2	Gtype
GSE34275	narXL rep 4	Gtype
GSE34275	anaerobic plus NO2	Air
GSE34275	plus NO3	Supp
GSE34275	anaerobic plus NO2	Air
GSE34275	anaerobic plus NO2	Air
GSE34275	wt , Growth conditions : aerobic	Gtype
GSE34275	wt , Growth conditions :	O
GSE34275	wt , Growth conditions : anaerobic plus NO2	Gtype
GSE34275	wt , Growth conditions : anaerobic plus	Gtype
GSE34275	wt aerobic	Gtype
GSE34275	wt aerobic AN rep 1	Gtype
GSE3437	wt aerobic AN rep 2	Gtype
GSE3437	wt aerobic AN rep 3	Gtype
GSE3437	wt aerobic rep 1	Gtype
GSE3437	wt aerobic rep 2	Gtype
GSE3437	wt aerobic rep 3	Gtype
GSE3437	wt anaerobic	Air
GSE3437	wt anaerobic	Air
GSE3437	wt anaerobic AN rep 1	Gtype
GSE3437	wt anaerobic AN rep 2	Gtype
GSE3437	wt anaerobic AN rep 3	Gtype
GSE3437	wt anaerobic plus NO2	Gtype
GSE3437	wt anaerobic plus NO2 AN rep 1	Gtype
GSE3437	wt anaerobic plus NO2 AN rep 2	Gtype
GSE3437	wt anaerobic plus NO2 AN rep 3	O
GSE3437	wt anaerobic plus NO2 rep 1	Gtype
GSE3437	wt anaerobic plus NO2 rep 2	Gtype
GSE3437	wt anaerobic plus NO2 rep 3	Gtype
GSE3437	wt anaerobic plus	Gtype
GSE3437	wt anaerobic plus NO3 AN rep 1	O
GSE3437	wt anaerobic plus NO3 AN rep 2	O
GSE3437	wt anaerobic plus NO3 AN rep 3	O
GSE3437	wt anaerobic plus NO3 rep 1	Gtype
GSE3437	wt anaerobic plus NO3 rep 2	Gtype
GSE3437	wt anaerobic plus NO3 rep 3	O
GSE3437	wt anaerobic rep 1	Gtype
GSE3437	wt anaerobic rep 2	Gtype
GSE3437	wt anaerobic rep 3	Gtype
GSE3437	untreated -LRB- reference sample -RRB- _ rep # 1	Gtype
GSE3437	untreated -LRB- reference sample -RRB- _ rep # 2	Gtype
GSE3437	E. coli O157 -LRB- Sakai -RRB- untreated -LRB- reference sample -RRB- _ rep # 1	Gtype
GSE3437	E. coli O157 -LRB- Sakai -RRB- untreated -LRB- reference sample -RRB- _ rep # 2	Gtype
GSE3437	E. coli O157 -LRB- Sakai -RRB- untreated -LRB- reference sample -RRB-	Gtype
GSE3437	od600 : 0.4	Gtype
GSE3437	Oxidative stress in E. coli O157 -LRB- Sakai -RRB- # 1	Gtype
GSE34449	Oxidative stress in E. coli O157 -LRB- Sakai -RRB- # 2	Gtype
GSE34449	k-12 MG1655 wild-type	Gtype
GSE34449	strain : o157 : H7 -LRB- Sakai -RRB- wild-type	Gtype
GSE34449	treatment : 0.5 mg	Gtype
GSE34449	ampicilin treatment	Phase
GSE34449	statistical _ output.txt : NC _ 000913.2	Gtype
GSE34449	log phase	Phase
GSE35100	eliminate DNA contamination from the sample -LRB- Qiagen -RRB-	Gtype
GSE35100	florfenicol treatment	Phase
GSE35100	RNA-Seq 	O
GSE35100	strain : DH5α -LRB- pAR060302 -RRB-	Gtype
GSE35100	streptomycin treatment	Phase
GSE35100	statistical _ output.txt : NC _ 012692.1	Gtype
GSE35100	statistical _ output.txt : NC _ 000913.2	Gtype
GSE35100	treatment : ampicillin -LRB- 50 µg	Gtype
GSE35100	treatment : florfenicol -LRB- 30 µg	Gtype
GSE35371	treatment : streptomycin -LRB- 50 µg	Gtype
GSE35371	H7 interacted with lettuce rhizosphere biological rep 1 slide 1	Gtype
GSE35371	H7 interacted with lettuce rhizosphere biological rep 1 slide 2	Gtype
GSE35371	H7 interacted with lettuce rhizosphere biological rep 2 slide 3	Gtype
GSE35371	E. coli O157 : H7 interacted with lettuce rhizosphere biological rep 2 slide 4	Gtype
GSE35371	H7 interacted with lettuce rhizosphere biological rep 3 slide 5	Gtype
GSE35371	H7 interacted with lettuce rhizosphere biological rep 3 slide 6	Gtype
GSE35371	genotype 	O
GSE35371	are part of the R	Gtype
GSE35371	Standard hot-phenol method	Gtype
GSE35371	strain : O157 : H7	Gtype
GSE35371	grown in lettuce rhizosphere	Gtype
GSE35371	grown without lettuce rhizosphere	Gtype
GSE35371	colicin M treatment	Gtype
GSE35371	colicin M treatment	Gtype
GSE35371	treatment : treated culture	Gtype
GSE35371	treatment : untreated culture	Gtype
GSE35371	the robust multiarray average algorithm -LRB- RMA -RRB-	Gtype
GSE35371	Escherichia coli O157 : H7 str . EDL933	Gtype
GSE35371	Germfree rat 's caecum , biological rep1	Gtype
GSE35371	Germfree rat 's caecum , biological rep2	Gtype
GSE35371	Germfree rat 's caecum , biological rep3	Gtype
GSE35371	growth protocol : control	Gtype
GSE35371	growth protocol : in the caecal content of rats associated with the human microbiota	Gtype
GSE35371	Human intestinal microbiota associated rat 's caecum , biological rep1	Gtype
GSE35371	Human intestinal microbiota associated rat 's caecum , biological rep2	Gtype
GSE35371	Human intestinal microbiota associated rat 's caecum , biological rep3	Gtype
GSE35371	to the manufacturer 's recommendations	Gtype
GSE35371	control 	O
GSE35371	H2O2 	O
GSE35371	1 % -LRB- v	Gtype
GSE35371	K-12 W3110	Gtype
GSE35371	to the manufacturer 's protocol	Gtype
GSE35371	treatment : 1 % H202 ,	Gtype
GSE35371	treatment : 1 % H2O2 ,	Gtype
GSE35371	treatment : control ,	Gtype
GSE35371	Escherichia coli wild type	Gtype
GSE35371	Escherichia coli wild type	Gtype
GSE35371	Escherichia coli wild type	Gtype
GSE35371	Escherichia coli wild type	Gtype
GSE35371	Escherichia coli wild type	Gtype
GSE35371	Escherichia coli wild type	Gtype
GSE35371	genotype : luxS	Gtype
GSE35371	genotype : wild type	Gtype
GSE35371	K-12 W3110	Gtype
GSE35371	to the manufacturer 's protocol	Gtype
GSE35371	treatment : 10 % H202	Gtype
GSE35371	30 % H202	Gtype
GSE35371	wild type , 10 % H2O2	Gtype
GSE35641	wild type , 30 % H2O2	Gtype
GSE35641	wild type , without H2O2	Gtype
GSE35641	JCB570 	O
GSE35641	JQ004 -LRB- rraA -RRB-	Gtype
GSE35641	rraA deletion , OD600 = 0.3	Gtype
GSE35641	VALUE is Log -LRB- base 2 -RRB- of the ratio of the median	Gtype
GSE35641	KSL2000 , 0.1 % arabinose	Gtype
GSE35641	KSL2000 , no arabinose	Gtype
GSE3591	KSL2000-Rne depletion	Phase
GSE3591	KSL2000-RraA overexpression	Phase
GSE3591	KSL2009 , 0.1 % arabinose	Gtype
GSE3591	KSL2009 , no arabinose	Gtype
GSE3591	KSL2009-N-Rne depletion	Phase
GSE3591	KSL2009-RraA overexpression	Phase
GSE3591	VALUE is Log -LRB- base 2 -RRB- of the ratio of the median	Gtype
GSE3591	genetic background : O157 H19	Gtype
GSE3591	genotype : triclosan tolerant mutant	Gtype
GSE3591	genotype : wild type	Gtype
GSE3591	Mutant E. coli O157 untreated , biological rep 1	Gtype
GSE3591	Mutant E. coli O157 untreated , biological rep 2	Gtype
GSE3591	Mutant E. coli O157 untreated , biological rep 3	Gtype
GSE3591	strain : T3 5H5	Gtype
GSE3591	strain : T3 5H5 M	Gtype
GSE3591	The wildtype and mutant E. coli O157 : H19	Gtype
GSE3591	treatment : triclosan	Gtype
GSE3591	treatment : untreated	Gtype
GSE3591	Triclosan tolerant mutant triclosan treated biological rep 1	Gtype
GSE3591	Triclosan tolerant mutant triclosan treated biological rep 2	Gtype
GSE3591	Triclosan tolerant mutant triclosan treated biological rep 3	Gtype
GSE3591	Triclosan tolerant mutant untreated biological rep 1	Gtype
GSE3591	Triclosan tolerant mutant untreated biological rep 2	Gtype
GSE3591	Triclosan tolerant mutant untreated biological rep 3	Gtype
GSE3591	Wildtype E. coli O157 untreated , biological rep 1	Gtype
GSE3591	Wildtype E. coli O157 untreated , biological rep 2	Gtype
GSE3591	Wildtype E. coli O157 untreated , biological rep 3	Gtype
GSE3591	Wildtype triclosan treated biological rep 1	Gtype
GSE3591	Wildtype triclosan treated biological rep 2	Gtype
GSE3591	Wildtype triclosan treated biological rep 3	Gtype
GSE3591	Wildtype untreated biological rep 1	Gtype
GSE3591	Wildtype untreated biological rep 2	Gtype
GSE3591	Wildtype untreated biological rep 3	Gtype
GSE3591	Solvent control , biological rep1	Gtype
GSE3591	Solvent control , biological rep2	Gtype
GSE3591	Solvent control , biological rep3	Gtype
GSE3591	strain : CVCC2943	Gtype
GSE3591	VALUE is Log -LRB- base 2 -RRB- of the ratio of the median	Gtype
GSE3591	Wild Type	Gtype
GSE3591	Wild Type	Gtype
GSE3591	30 CMid Log	Gtype
GSE3591	Wild Type -LRB- K10 -RRB- M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE3591	Wild Type -LRB- N3433 -RRB-	Gtype
GSE3591	Wild Type -LRB- N3433 -RRB- M9 0.2 % Glycerol , 0.2 % Tryptone	Gtype
GSE3591	Wild Type	Gtype
GSE3591	WT -LRB- K10	Gtype
GSE3591	WT -LRB- N3433	Gtype
GSE36130	WT -LRB- N3433	Gtype
GSE36130	WT -LRB- N3433	Gtype
GSE36130	WT -LRB- N3433	Gtype
GSE36130	WT -LRB- N3433	Gtype
GSE36130	WT -LRB- N3433	Gtype
GSE36130	WT -LRB- SH3208 -RRB- M9	Gtype
GSE36130	WT -LRB- SH3208 -RRB- vs N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36130	1.5 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36130	1.5 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36130	1.5 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36130	1.5 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36130	1.5 ' RNA Decay of WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone , 40 mM Suc	Gtype
GSE36130	1.5 ' RNA Decay of WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc.at 30 C	Gtype
GSE36130	1.5 ' RNA Decay of WT -LRB- N3433 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone	Gtype
GSE36130	1.5 ' RNA Decay of WT -LRB- N3433 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone	Gtype
GSE36130	1.5 ' RNA Decay of WT -LRB- N3433 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone	Gtype
GSE36248	1.5 ' RNA Decay of WT -LRB- N3433 -RRB-	Gtype
GSE36248	1.5 ' RNA Decay of WT -LRB- SH3208 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone	Gtype
GSE36248	1.5 ' RNA Decay of WT -LRB- SH3208 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone	Gtype
GSE36248	3 ' RNA Decay of WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE36248	4.5 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36248	4.5 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36248	4.5 ' RNA Decay of WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE36248	4.5 ' RNA Decay of WT -LRB- N3433 -RRB-	Gtype
GSE36248	4.5 ' RNA Decay of WT -LRB- N3433 -RRB-	Gtype
GSE36248	4.5 ' RNA Decay of WT -LRB- SH3208 -RRB-	Gtype
GSE36248	6 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36885	6 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36885	6 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36885	6 ' RNA Decay N-RNaseE -LRB- BZ453 -RRB-	Gtype
GSE36885	6 ' RNA Decay of WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE36885	6 ' RNA Decay of WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE36885	6 ' RNA Decay of WT -LRB- N3433 -RRB-	Gtype
GSE36885	6 ' RNA Decay of WT -LRB- N3433 -RRB-	Gtype
GSE36885	6 ' RNA Decay of WT -LRB- N3433 -RRB-	Gtype
GSE36885	6 ' RNA Decay of WT -LRB- N3433 -RRB-	Gtype
GSE37026	6 ' RNA Decay of WT -LRB- SH3208 -RRB-	Gtype
GSE37026	6 ' RNA Decay of WT -LRB- SH3208 -RRB-	Gtype
GSE38185	VALUE is Log -LRB- base 2 -RRB- of the ratio of the median	Gtype
GSE38185	WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE38185	WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE38185	WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE38185	WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE38185	WT -LRB- K10 -RRB- in M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE38185	WT -LRB- K10 -RRB- M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Suc	Gtype
GSE38185	WT -LRB- K10 -RRB- M9 0.2 % Glycerol 0.2 % Tryptone 40 mM Succinate	Gtype
GSE38185	WT -LRB- N3433 -RRB-	Gtype
GSE38185	WT -LRB- N3433 -RRB-	Gtype
GSE38185	WT -LRB- N3433 -RRB-	Gtype
GSE38186	WT -LRB- N3433 -RRB-	Gtype
GSE38186	WT -LRB- N3433 -RRB- M9	Gtype
GSE38186	WT -LRB- SH3208 -RRB-	Gtype
GSE38186	WT -LRB- SH3208 -RRB-	Gtype
GSE38186	WT -LRB- SH3208 -RRB-	Gtype
GSE38186	WT -LRB- SH3208 -RRB-	Gtype
GSE38186	WT -LRB- SH3208 -RRB- M9	Gtype
GSE38186	Bacterial cell	Gtype
GSE38186	biological replicate : 1	Gtype
GSE38186	biological replicate : 2	Gtype
GSE38186	significantly over-expressed relative to the reference : average	Gtype
GSE38186	Escherichia coli strain K12 sub-strain MG1655 genome -LRB- GenBank accession no . U00096 .2 -RRB-	Gtype
GSE3869	m 25 -LRB- quality trim 10 , quality filter 10 , minimal length 25 -RRB-	Gtype
GSE3869	RNA-Seq 	O
GSE3869	strain : MG 1655	Gtype
GSE3870	stress : acidic	Gtype
GSE3870	stress : Minimal medium	Gtype
GSE3870	stress : n-butanol	Gtype
GSE3870	stress : osmotic	Gtype
GSE3870	stress : oxidative	Gtype
GSE3870	content : Tab delimited text file ; includes : gene differential expression levels relative to the G500 strain	Gtype
GSE3870	technical replicates : 2	Gtype
GSE3870	iced water bath under constant agitation -LRB- 150 rpm -RRB- until the temperature	Gtype
GSE39343	growth phase : stationary phase	Gtype
GSE39343	37 °C	Temp
GSE39343	growth protocol : Treatment 1 -LRB- 58 °C F = 2 -RRB-	Gtype
GSE39343	growth protocol : Treatment 2 -LRB- 58 °C F = 3 -RRB-	Gtype
GSE39343	growth protocol : Treatment 3 -LRB- 60 °C F = 3 -RRB-	Gtype
GSE39343	growth protocol : Treatment 4 -LRB- core temperature of 71 °C -RRB-	Gtype
GSE39343	strain : strain K12 substrain MG1655	Gtype
GSE39343	20 min	Supp
GSE39607	20 min	Supp
GSE39607	20 min	Supp
GSE39607	20 min	Supp
GSE3978	strain : Wild type strain MG1655	Gtype
GSE3978	dpiA 2x Overexpression pHI1429 in LB	Gtype
GSE3978	dpiAoverexpressor 	O
GSE3978	ecd3-c-0081429 wt vs dpiAoverexpressor	Gtype
GSE3978	ecd3-c-0101429 wt vs dpiAoverexpressor	Gtype
GSE3978	VALUE is Log -LRB- base 2 -RRB- of the ratio of the median	Gtype
GSE3978	Affinity Purified FNR antibody	Anti
GSE3978	Pre-cleared FNR antibody	Anti
GSE3978	antibody : Pre-cleared H-NS polyclonal antibody	Gtype
GSE3978	antibody : Pre-cleared IHF polyclonal antibody	Gtype
GSE3978	RNA Polymerase ß monoclonal antibody from NeoClone -LRB- W0002 -RRB-	Anti
GSE3978	16 µM IPTG	Supp
GSE3978	4 µM IPTG	Supp
GSE3978	8 µM IPTG	Supp
GSE3978	∆ hns	Gtype
GSE3978	∆ fnr ChIP DNA from PK4854	Gtype
GSE3978	∆ hns ∆ stpA A	Gtype
GSE3978	∆ hns ∆ stpA B	Gtype
GSE3978	16 µM INPUTTG	Supp
GSE3978	4 µM INPUTTG	Supp
GSE3978	8 µM INPUTTG	Supp
GSE3978	16 µM IPTG	Supp
GSE3978	4 µM IPTG	Supp
GSE3978	8 µM IPTG	Supp
GSE3978	16 µM IPTG	Supp
GSE3978	4 µM IPTG	Supp
GSE3978	8 µM IPTG	Supp
GSE3978	growth condition : Aerobic	Gtype
GSE39926	INPUT ChIP DNA from ∆ hns	Gtype
GSE39926	Ptac : : fnr	Gtype
GSE39926	16 µM IPTG	Supp
GSE39926	Ptac : : fnr	Gtype
GSE39926	4 µM IPTG	Supp
GSE39926	Ptac : : fnr	Gtype
GSE39926	8 µM IPTG	Supp
GSE39926	Ptac : : fnr	Gtype
GSE39926	16 µM IPTG	Supp
GSE39926	Ptac : : fnr	Gtype
GSE39926	4 µM IPTG	Supp
GSE39926	Ptac : : fnr	Gtype
GSE39926	8 µM IPTG	Supp
GSE39926	Ptac : : fnr	Gtype
GSE39926	16 µM IPTG	Supp
GSE39926	strain : ∆ hns	Gtype
GSE39926	strain : MG1655 K-12 WT	Gtype
GSE39926	strain : PK4854	Gtype
GSE39926	strain : PK8263	Gtype
GSE39926	MG1655 K-12 WT	Gtype
GSE39926	aerobic INPUT DNA	Gtype
GSE39926	Anaerobic Cultures	Air
GSE39926	anaerobic INPUT DNA	Gtype
GSE40557	W0002 , Lot Number : 2008L10-001	Gtype
GSE40557	W0004 , Lot Number : 2008K12-001 All other	Gtype
GSE40557	Affinity purified FNR polyclonal antibody	Anti
GSE40557	RNA Polymerase σ70 monoclonal antibody from NeoClone -LRB- W0004 -RRB-	Anti
GSE40557	ChIP-Seq 	O
GSE40557	U00096 .2	Gversion
GSE40557	U00096 .2	Gversion
GSE40557	U00096 .2	Gversion
GSE40557	growth condition : Anaerobic Cultures	Gtype
GSE40557	U00096 .2	Gversion
GSE40557	U00096 .2	Gversion
GSE40557	U00096 .2	Gversion
GSE40557	U00096 .2	Gversion
GSE40557	strain : Wild Type K-12	Gtype
GSE40557	dFNR _ rep2 _	O
GSE40557	wild-type _ rep1 _	O
GSE40557	wild-type _ rep2 _	O
GSE40557	dFNR -LRB- PK4854 -RRB-	Gtype
GSE40811	U00096 .2	Gversion
GSE40811	U00096 .2	Gversion
GSE40811	U00096 .2	Gversion
GSE40811	U00096 .2	Gversion
GSE40811	genoype : dFNR	Gtype
GSE40811	genoype : Wild-Type	Gtype
GSE40811	phenotype : lacking FNR protein	Gtype
GSE40811	phenotype : normal	Gtype
GSE40811	RNA-Seq 	O
GSE40811	WT _ Anaerobic _ RNAseq _ A _ Tag _ Count.txt :	O
GSE40811	U00096 .2	Gversion
GSE40811	U00096 .2	Gversion
GSE40811	U00096 .2	Gversion
GSE40811	U00096 .2	Gversion
GSE40811	cell type : bacterial cells	Gtype
GSE40811	anti-b -LRB- RNAP -RRB- NT63	Gtype
GSE40811	locally weighted linear regression -LRB- LOWESS -RRB- normalization on raw	Gtype
GSE40811	the `` normalizeWithinArrays '' function in the limma package for the statistical program R	Gtype
GSE40811	genotype 	O
GSE40811	MDS42 RNAP 1	Gtype
GSE40811	MDS42 RNAP 2	Gtype
GSE40811	MDS42 ΔnusA * RNAP 1	Gtype
GSE40811	MDS42 ΔnusA * RNAP 2	Gtype
GSE40811	MDS42 ΔnusG RNAP 1	Gtype
GSE40811	MDS42 ΔnusG RNAP 2	Gtype
GSE40811	sample type : input DNA	Gtype
GSE40811	strain : MDS42 -LRB- RL1961 -RRB-	Gtype
GSE40811	strain : MG1655 -LRB- RL1655 -RRB-	Gtype
GSE40811	strain : RL2673	Gtype
GSE40811	strain : RSW421 -LRB- RL1962 -RRB-	Gtype
GSE40811	strain : RSW422 -LRB- RL1963 -RRB-	Gtype
GSE40811	genotype 	O
GSE40811	MDS42 	O
GSE40811	MDS42 1	Supp
GSE40811	MDS42 + 20 ug	Supp
GSE40811	MDS42 ΔnusA *	Gtype
GSE40811	MDS42 ΔnusA * 1	Gtype
GSE40811	MDS42 ΔnusA * 2	Gtype
GSE40811	MDS42 ΔnusG	Phase
GSE40811	MDS42 ΔnusG 1	Gtype
GSE40811	MDS42 ΔnusG 2	Gtype
GSE40811	strain : MDS42 -LRB- RL1961 -RRB-	Gtype
GSE40811	strain : RSW421 -LRB- RL1962 -RRB-	Gtype
GSE40811	strain : RSW421 -LRB- RL1967 -RRB-	Gtype
GSE40811	strain : RSW422 -LRB- RL1963 -RRB-	Gtype
GSE40811	strain : RSW472 -LRB- RL1966 -RRB-	Gtype
GSE40811	20 ug	Gtype
GSE40811	Δrac 	Gtype
GSE40811	Δrac 1	Supp
GSE40811	Δrac + 20 ug	Supp
GSE40811	Δrac ΔnusG	Phase
GSE40811	Δrac ΔnusG 1	Gtype
GSE40811	Δrac ΔnusG 2	Gtype
GSE40811	U00096 .2	Gversion
GSE40811	genotype 	Gversion
GSE40811	MG1655 	Gversion
GSE40811	20 ug	Supp
GSE40811	molecule subtype : ribosome-depeleted RNA	Gtype
GSE40811	RNA-Seq 	Gtype
GSE40811	strain : MG1655	Gtype
GSE40811	agent : control -LRB- 1 ml of LB broth added -RRB-	Gtype
GSE40811	agent : ethanol -LRB- 1 ml of ethanol 20 % added -RRB-	Gtype
GSE40811	R2 .6.1 statistical software	Gtype
GSE40811	E.coli _ control _ repA _ t1	Gtype
GSE41186	ethanol _ repA _ t1	Gtype
GSE41186	ethanol _ repA _ t2	Gtype
GSE41186	ethanol _ repA _ t3	Gtype
GSE41186	ethanol _ repB _ t1	Gtype
GSE41186	ethanol _ repB _ t2	Gtype
GSE41186	ethanol _ repB _ t3	Gtype
GSE41186	ethanol _ repC _ t1	Gtype
GSE41186	ethanol _ repC _ t2	Gtype
GSE41186	ethanol _ repC _ t3	Gtype
GSE41186	37 °C	Temp
GSE41186	repA _ t1	Gtype
GSE41186	repA _ t3	Gtype
GSE41186	repB _ t1	Gtype
GSE41186	repB _ t2	Gtype
GSE41186	repB _ t3	Gtype
GSE41186	repC _ t1	Gtype
GSE41186	repC _ t2	Gtype
GSE41186	repC _ t3	Gtype
GSE41186	time : 20 minutes -LRB- t2 -RRB- after treatment	Gtype
GSE41186	time : 40 minutes -LRB- t3 -RRB- after treatment	Gtype
GSE41186	time : at time of treatment -LRB- t1 -RRB-	Gtype
GSE41186	genotype : wild type	Gtype
GSE41186	genotype : yajL mutant	Gtype
GSE41186	growth phase : exponential	Gtype
GSE41186	Intensity measures in wild type strain , replicate 1	Gtype
GSE41186	Intensity measures in wild type strain , replicate 2	Gtype
GSE41186	Intensity measures in yajL mutant strain , replicate 1	Gtype
GSE41186	strain 	O
GSE41186	Untreated wild type versus untreated yajL mutant .	Gtype
GSE41186	wild type MG1655	Gtype
GSE41186	yajL mutant -LRB- genetic background MG1655 -RRB-	Gtype
GSE41186	Computation of summary statistics	Gtype
GSE41186	genotype 	O
GSE41186	generate the bed	Gtype
GSE41186	the quality of the array data	Gtype
GSE41186	without D-galactose	Gtype
GSE41187	M9 minimal complete media	Med
GSE41187	MG1655 PhtpG : : lacZ delta lacX74	Gtype
GSE41187	Wild type control -LRB- 0 min -RRB-	Gtype
GSE41187	Wild type control -LRB- 10 min -RRB-	Gtype
GSE41187	Wild type control -LRB- 20 min -RRB-	Gtype
GSE41187	Wild type control -LRB- 2.5 min -RRB-	Gtype
GSE41187	Wild type control -LRB- 5 min -RRB-	Gtype
GSE41187	Ampicillin treatment T1	Gtype
GSE41190	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE41190	CaCl2 wash T1	Gtype
GSE41190	CaCl2 wash T2	Gtype
GSE41190	CaCl2 wash T3	Gtype
GSE41190	CaCl2 wash T4	Gtype
GSE41190	CaCl2 wash T5	Gtype
GSE41190	CaCl2 wash T6	Gtype
GSE41190	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE41936	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE41936	Indol-acrylate -LRB- 10 ug	Gtype
GSE41936	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE41936	Indol-acrylate -LRB- 15 ug	Gtype
GSE41936	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE41936	Kanamycin treatment T1	Gtype
GSE41936	Kanamycin treatment T2	Gtype
GSE41936	Kanamycin treatment T3	Gtype
GSE41936	Kanamycin treatment T4	Gtype
GSE41936	Kanamycin treatment T5	Gtype
GSE41936	Kanamycin treatment T6	Gtype
GSE41938	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE41939	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE42205	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE42205	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE42205	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE42205	Norfloxacin -LRB- 50 ug	Gtype
GSE42205	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE42205	gyrArparCr _ Norfloxacin -LRB- 15 ug	Gtype
GSE42205	Escherichia coli C600 -LRB- gyrArparCr -RRB- , LB	Gtype
GSE42205	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE42205	gyrArparCr _ Norfloxacin -LRB- 50 ug	Gtype
GSE42205	Escherichia coli C600 -LRB- gyrArparCr -RRB- , LB	Gtype
GSE42205	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE42205	Recovery in 10mM Na-P T1	Gtype
GSE42205	Recovery in 10mM Na-P T2	Gtype
GSE42205	Recovery in 10mM Na-P T3	Gtype
GSE42205	Recovery in 10mM Na-P T4	Gtype
GSE42205	Recovery in 10mM Na-P T5	Gtype
GSE42205	Recovery in 10mM Na-P T6	Gtype
GSE42205	Recovery in 10mM Na-P T7	Gtype
GSE42702	Escherichia coli MG1655 , 0 min recovery in 10 mM Na-P -LRB- pH 7.5 -RRB-	Gtype
GSE42702	Escherichia coli MG1655 , 15 min recovery in 10 mM Na-P -LRB- pH 7.5 -RRB-	Gtype
GSE42702	30 min recovery in 10mM Na-P	Gtype
GSE42702	30 min recovery in 10 mM Na-P -LRB- pH 7.5 -RRB-	Gtype
GSE42702	Escherichia coli MG1655 , 45 min recovery in 10 mM Na-P -LRB- pH 7.5 -RRB-	Gtype
GSE42702	Escherichia coli MG1655 , 60 min recovery in 10 mM Na-P -LRB- pH 7.5 -RRB-	Gtype
GSE42702	Escherichia coli MG1655 , 75 min recovery in 10 mM Na-P -LRB- pH 7.5 -RRB-	Gtype
GSE42702	Escherichia coli MG1655 , 90 min recovery in 10 mM Na-P -LRB- pH 7.5 -RRB-	Gtype
GSE42702	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE42821	0.2 % glucose	Supp
GSE42821	0.2 % glucose	Supp
GSE42821	0.2 % glucose	Supp
GSE42821	0.2 % glucose	Supp
GSE4321	0.2 % glucose	Supp
GSE4321	0.2 % glucose	Supp
GSE4321	0.2 % glucose	Supp
GSE4321	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4321	Sodium Azide treatment T1	Gtype
GSE4321	Sodium Azide treatment T2	Gtype
GSE4321	Sodium Azide treatment T3	Gtype
GSE4321	Sodium Azide treatment T4	Gtype
GSE4321	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4321	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4357	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4358	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4359	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4359	Gamma treatment T1	Gtype
GSE4359	Gamma treatment T2	Gtype
GSE4359	Gamma treatment T3	Gtype
GSE4359	Gamma treatment T4	Gtype
GSE4359	Gamma treatment T5	Gtype
GSE4360	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4360	Novobiocin treatment -LRB- 200 ug	Gtype
GSE4361	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4361	pUC expression OD 0.2	Gtype
GSE4362	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4362	Stationary phase in LB T1	Gtype
GSE4362	Stationary phase in LB T2	Gtype
GSE4362	Stationary phase in LB T3	Gtype
GSE4362	Stationary phase in LB T4	Gtype
GSE4362	Stationary phase in	Gtype
GSE4362	LB T5	Med
GSE4363	20 min	Supp
GSE4363	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4363	Temperature upshift in gyrBT mutant T1	Gtype
GSE4363	Normalized log -LRB- 2 -RRB- ratio of Cy5	Gtype
GSE4363	CCCP-3 , biological rep3	Gtype
GSE4363	Control-3 , biological rep3	Gtype
GSE4363	30 min	Supp
GSE4363	30 min	Supp
GSE4364	30 min	Supp
GSE4364	Gentamicin-3 , biological rep3	Gtype
GSE4364	growth phase : logarithmic growth	Gtype
GSE4364	PGRP-3 , biological rep3	Gtype
GSE4364	the formula : average intensity in treated group	Gtype
GSE4364	K-12 substrain MG1655	Gtype
GSE4364	tissue : entire bacterial cell	Gtype
GSE4364	100 µg	Gtype
GSE4364	5 µg	Gtype
GSE4365	800 µM CCCP for 15 min	Supp
GSE4367	Plasmid DNA , post conjugation	Gtype
GSE4367	plasmid source : Initial Recipient Library	Gtype
GSE4367	plasmid source : Post Selection Library	Gtype
GSE4367	cell type : Persister cells	Gtype
GSE4367	furanone-free control	Gtype
GSE4368	strain : E. coli RP437	Gtype
GSE4368	culture type : Ancestor	Gtype
GSE4368	culture type : evolved	Gtype
GSE4369	morphology : a	Gtype
GSE4369	morphology : b	Gtype
GSE4369	morphology : c	Gtype
GSE4369	oxygen regime : daily shift	Gtype
GSE4369	oxygen regime : transfers in constant static conditions	Gtype
GSE4369	oxygen regime : transfers under constant shaking -LRB- 200rpm -RRB-	Gtype
GSE4369	population : 1	Gtype
GSE4369	population : 2	Gtype
GSE4369	population : 3	Gtype
GSE4369	population : 4	Gtype
GSE4370	population : 5	Gtype
GSE4370	population : 6	Gtype
GSE4370	population : 7	Gtype
GSE4370	Pure culture in LB	Med
GSE4370	the MA table conversion tool available on the MOLGEN Bioinformatics Server -LRB- http :	Gtype
GSE4370	strain : MC1000	Gtype
GSE4371	100ng 16S rRNA gene amplicon of a mock community	Gtype
GSE4371	-LSB- Clostridium -RSB- leptum	Gtype
GSE4372	Lactobacillus acidophilus	Phase
GSE4372	Mock community	Gtype
GSE4372	probe was the ratio between the spot 's median intensity	Gtype
GSE4372	sample type : mock community -LSB- artificial bacterial DNA mix -RSB-	Gtype
GSE4373	Escherichia coli O157 : H7	Gtype
GSE4373	genotype : plasmid cured strain	Gtype
GSE4373	genotype : wild type	Gtype
GSE4373	RNA-Seq 	O
GSE4373	strain : Xuzhou21	Gtype
GSE4373	strain : Xuzhou21m	Gtype
GSE4373	tab-delimited text files include RPKM values	Gtype
GSE4373	the RPKM method	Gtype
GSE4374	WT rep1	Gtype
GSE4374	WT rep2	Gtype
GSE4374	Xuzhou21 cured of the pO157	Gtype
GSE4374	bacterial cells	Med
GSE4374	condition : LB +3 g	Gtype
GSE4374	Escherichia coli BL21 -LRB- DE3 -RRB-	Gtype
GSE4374	gi  387825439	Gtype
GSE4374	genotype : Pck over-expressed	Gtype
GSE4374	genotype : wild-type	Gtype
GSE4375	RNA-Seq 	O
GSE4375	strain : BL21 -LRB- DE3 -RRB-	Gtype
GSE4375	control 12h	Gtype
GSE4375	control 24h	Gtype
GSE4375	control 6h	Gtype
GSE4375	so that the 75th percentile in the Cy3	Gtype
GSE4375	expose Bacillus VOC 12h	Gtype
GSE4375	Expose Bacillus VOC-12h rep1	Gtype
GSE4375	Expose Bacillus VOC-12h rep2	Gtype
GSE4375	Expose Bacillus VOC-12h rep3	Gtype
GSE4375	Expose Bacillus VOC-12h rep4	Gtype
GSE4375	expose Bacillus VOC24h	Gtype
GSE4376	Expose Bacillus VOC-24h rep1	Gtype
GSE4376	Expose Bacillus VOC-24h rep2	Gtype
GSE4376	Expose Bacillus VOC-24h rep3	Gtype
GSE4376	Expose Bacillus VOC-24h rep4	Gtype
GSE4376	expose Bacillus VOC 6h	Gtype
GSE4376	Expose Bacillus VOC-6h rep1	Gtype
GSE4376	Expose Bacillus VOC-6h rep2	Gtype
GSE4376	Expose Bacillus VOC-6h rep3	Gtype
GSE4376	Expose Bacillus VOC-6h rep4	Gtype
GSE4376	strain : MG1655	Gtype
GSE4376	time : 12 h	Gtype
GSE4376	time : 24 h	Gtype
GSE4376	time : 6 h	Gtype
GSE4376	manufacture 's instruction	Gtype
GSE4376	treatment : Bacillus volatile organic compounds -LRB- VOCs -RRB-	Gtype
GSE4376	treatment : control	Gtype
GSE4378	K-12 substr . MG1655 genome -LRB- NC _ 000913.3 -RRB-	O
GSE4378	genotype : CV108	Gtype
GSE4378	genotype : MG1655	Gtype
GSE4378	genotype : pHDB3	Gtype
GSE4378	genotype : pLCV1	Gtype
GSE4379	genotype : SgrR	Gtype
GSE4379	genotype : sgrS	Gtype
GSE4379	media : Defined MOPS Minimal +	Med
GSE4379	0.4 % Glycerol +0.5 % 2-DG	Gtype
GSE4379	0.2 % Glucose	Supp
GSE4417	RNA-Seq 	O
GSE44211	Total RNA from bacterial culture	Gtype
GSE44211	WT _ 1	Gtype
GSE44211	WT _ 2	O
GSE44211	WT _ 3	O
GSE44211	WT _ minus _ 2DG _ 1	O
GSE44211	WT _ minus _ 2DG _ 2	O
GSE44211	WT _ minus _ 2DG _ 3	O
GSE44211	WT _ plus _ 2DG _ 1	O
GSE44211	WT _ plus _ 2DG _ 2	O
GSE44211	WT _ plus _ 2DG _ 3	O
GSE44211	wt _ T _ 1	Gtype
GSE44211	wt _ T _ 2	O
GSE44211	wt _ T _ 3	O
GSE44211	wt _ un _ 1	Gtype
GSE44211	wt _ un _ 2	O
GSE44211	wt _ un _ 3	O
GSE44211	Chemostat 1 h irradiated	Gtype
GSE44211	Chemostat 1h irradiated	Gtype
GSE44211	Chemostat 50 h irradiated	Gtype
GSE44258	Jaguar 	O
GSE44258	UVA irradiated chemostat for 1 h , run 2 dye swap	Gtype
GSE44258	e.coli culture protocol : conditioned Caco-2 cell medium	Gtype
GSE44258	e.coli culture protocol : fresh medium	Gtype
GSE44258	STEC EC472	Phase
GSE44258	fresh medium , replicate 1 -LSB- FRESH -RSB-	Gtype
GSE44258	fresh medium , replicate 2 -LSB- FRESH -RSB-	Med
GSE44258	fresh medium , replicate 3 -LSB- FRESH -RSB-	Gtype
GSE44258	fresh medium , replicate 4 -LSB- FRESH -RSB-	Gtype
GSE44273	fresh medium , replicate 1 -LSB- FRESH -RSB-	Gtype
GSE44273	fresh medium , replicate 2 -LSB- FRESH -RSB-	Med
GSE44273	fresh medium , replicate 3 -LSB- FRESH -RSB-	Gtype
GSE44273	fresh medium , replicate 4 -LSB- FRESH -RSB-	Gtype
GSE44273	STEC EH41 , conditioned medium	Gtype
GSE44614	STEC EH41 , fresh medium	Med
GSE44614	strain : EC472	Gtype
GSE44614	strain : EH41 -LRB- isolated from patient with HUS -RRB-	Gtype
GSE44614	The fresh medium	Med
GSE44614	∆ ArcA	Gtype
GSE44614	∆ ArcA	Gtype
GSE44614	INPUT ChIP DNA from PK9416 , no ArcA control	Gtype
GSE44614	strain : MG1655 K-12 WT	Gtype
GSE44614	strain : PK9416	Gtype
GSE44614	Anaerobic Cultures	Air
GSE44614	U00096 .2	Gversion
GSE44614	U00096 .2	Gversion
GSE44614	ChIP-Seq 	O
GSE44614	culture condition : Anaerobic Cultures	Gtype
GSE44614	U00096 .2	Gversion
GSE44614	strain : Wild Type K-12	Gtype
GSE44614	BL21 -LRB- DE3 -RRB- _ adhE mutant	Gtype
GSE44614	BL21 -LRB- DE3 -RRB- , adhE mutant	Gtype
GSE44614	wild type	Gtype
GSE44614	B strain , wild type	Gtype
GSE44614	BW25113 _ adhE mutant	Gtype
GSE44614	BW25113 , adhE mutant	Gtype
GSE44614	Escherichia coli BL21 -LRB- DE3 -RRB-	Gtype
GSE44614	cDNA master mix -LRB- 5X First strand buffer , 0.1 M DTT , 10mM dNTP	Gtype
GSE44614	genotype 	O
GSE44614	wild type	Gtype
GSE44614	K-12 strain , wild type	Gtype
GSE44614	strain background : B	Gtype
GSE44614	wild type	Gtype
GSE44614	-LRB- 1 -RRB- K-12 strain , wild type ; -LRB- 2 -RRB- B strain , wild type ; -LRB- 3 -RRB- BW25113 , adhE mutants ; -LRB- 4 -RRB- BL21 -LRB- DE3 -RRB- , adhE mutants	Gtype
GSE44614	A single large fastq format file of high	Gtype
GSE44614	CASAVA version 1.4	Gtype
GSE44752	Each type	Gtype
GSE44752	particular type of base-substitution divided by the number of the reads with the reference base in each DNA position .	Gtype
GSE44752	E.coli strain MG1655	Gtype
GSE44752	error-prone in vitro -LRB- Mn2 + -RRB-	Anti
GSE44752	error-prone in vitro MnCl2	Gtype
GSE44752	error-proof in vitro 1 -LRB- GreAB	Gtype
GSE44752	error-proof in vitro 2 -LRB- GreAB	Gtype
GSE44752	error-proof in vitro MgCl2 + GreAB	Gtype
GSE44752	error-proof in vitro MnCl2 + GreAB	Gtype
GSE44752	2547695 -RRB-	Gtype
GSE44752	In vitro RNA preparation : The 5.7 kb RNA	Gtype
GSE44846	in vivo	Med
GSE44846	In vivo RNA preparation : The cells	Gtype
GSE44846	mrna synthesis : in vitro MgCl2	Gtype
GSE44846	mrna synthesis : in vitro MgCl2 + GreAB	Gtype
GSE44846	mrna synthesis : in vitro MnCl2	Gtype
GSE44846	mrna synthesis : in vitro MnCl2 + GreAB	Gtype
GSE44846	mrna synthesis : in vivo	Gtype
GSE44846	RNA-Seq 	Gtype
GSE44846	standard in vitro -LRB- Mg2 + -RRB-	Anti
GSE44846	standard in vitro MgCl2	Gtype
GSE44846	strain : MG1655	Gtype
GSE44846	tab-delimited text file of transition error rate per position . The position is corresponding to the position of \ Sequenced region of pPR9 plasmid \ -LRB- one of the attached txt file -RRB- .	Gtype
GSE44846	At the appropriate phase of growth , a one-eighth volume of stop solution -LRB- 95 % -LSB- v	Gtype
GSE44928	genotype : wild-type	Gtype
GSE44928	RNA-Seq 	O
GSE44928	strain : BW25113	Gtype
GSE44928	treatment : tobacco acid pyrophosphatase -LRB- TAP -RRB-	Gtype
GSE44928	anti-c-myc antibody	Gtype
GSE44928	anti-FecI antibody	Gtype
GSE44928	anti-RpoB antibody	Anti
GSE44928	anti-RpoD antibody	Gtype
GSE45228	anti-RpoF antibody	Gtype
GSE45228	anti-RpoN antibody	Gtype
GSE45228	anti-RpoS antibody	Anti
GSE45228	normal mouse IgG -LRB- Upstate -RRB-	Gtype
GSE45443	genotype : rpoH-8myc	Gtype
GSE45443	genotype : wild type	Gtype
GSE45443	genotype : ΔrpoN	Gtype
GSE45443	genotype : ΔrpoS	Gtype
GSE45443	0.2 % glucose and 0.2 % glutamine	Supp
GSE45443	stationary phase -LRB- OD600nm 1.5 -RRB- in M9 glucose media	Gtype
GSE4569	aerobically at 37 °C in M9 minimal media supplemented with 0.2 % glucose or W2 minimal media supplemented with 0.2 % glucose and 0.2 % glutamine . For heatshock conditions , cells were grown to mid-log phase and incubated at 42oC for 10 min .	O
GSE4569	RNA-Seq 	O
GSE4569	hash size = 10 , mismatch = 0	Gtype
GSE4569	strain : MG1655	Gtype
GSE4569	hash size = 10 , mismatch = 0	Gtype
GSE4569	treatment : glutamine	Gtype
GSE4569	treatment : heat shock	Gtype
GSE4569	treatment : stationary phase	Gtype
GSE45979	D1 _ 2x _ v2	Gtype
GSE45979	D1 _ 3x _ v2	Gtype
GSE45979	D1 _ 4x _ v2	Gtype
GSE45979	EDL933 _ 2x _ v2	Gtype
GSE45979	EDL933 _ 3x _ v2	Gtype
GSE45979	EDL933 _ 4x _ v2	Gtype
GSE45979	W3110 _ 2x _ v2	Gtype
GSE45979	W3110 _ 3x _ v2	Gtype
GSE45979	W3110 _ 4x _ v2	Gtype
GSE46413	overnight in Luria-Bertani -LRB- LB	Med
GSE46413	-RRB- broth with continuous agitation	Gtype
GSE46413	phage DNA	Phase
GSE46413	Qiagen Genomic Tip 500	Gtype
GSE46413	serotype O157 : H7	Gtype
GSE46413	serotype O157 : H7	Gtype
GSE46413	serotype O175 : H16	Gtype
GSE46413	Standard Affymetrix procedure	Gtype
GSE46413	40 hours of cultivation in continuous colture -LRB- mineral medium with 100 mg	Gtype
GSE46413	500 hours of cultivation in continuous colture -LRB- mineral medium with 100 mg	Gtype
GSE46414	control 	O
GSE46414	Control 	O
GSE46414	Sample 	O
GSE46414	represent log10 -LRB- Cy5	Gtype
GSE46414	noise -LRB- RawQ -RRB- less than 5 , background signal less than 40 -LRB- 100 target intensity	Gtype
GSE46414	P4XB2 Mutant -LRB- 1992 -RRB- in Arginine	Gtype
GSE46414	P4XB2 Mutant -LRB- 1993 -RRB- in Arginine	Gtype
GSE46414	P4XB2 Mutant -LRB- 1994 -RRB- in Arginine	Gtype
GSE46414	P4X Wild Type -LRB- 1753 -RRB- Reference	Gtype
GSE46414	P4X Wild Type -LRB- 1754 -RRB- in Arginine	Gtype
GSE46414	P4X Wild Type -LRB- 1765 -RRB- Reference	Gtype
GSE46414	P4X Wild Type -LRB- 1766 -RRB- in Arginine	Gtype
GSE46455	P4X Wild Type -LRB- 1989 -RRB- Reference	Gtype
GSE46455	P4X Wild Type -LRB- 1990 -RRB- in Arginine	Gtype
GSE46455	BW25113-pCA24N 	O
GSE46455	genotype 	O
GSE46455	overexpression of dosP -LRB- pCA24N _ dosP -RRB-	Gtype
GSE46455	overexpression of empty vector -LRB- pCA24N -RRB-	Gtype
GSE46455	strain : BW25113	Gtype
GSE46479	protocol : late log phase , LB	Gtype
GSE46479	protocol : late log	Gtype
GSE46479	strain : KCTC 2571	Gtype
GSE46479	strain : PKH5000	Gtype
GSE46479	wt E. coli , after butanol treatment	Gtype
GSE46479	wt E. coli , before butanol treatment	Gtype
GSE46479	APEC strain O08	Gtype
GSE46479	APEC strain SCI-07	Gtype
GSE46507	DMEM growth media	Gtype
GSE46507	strain : APEC SCI-07 -LRB- O nontypeable : H31 -RRB- isolated from lesions -LRB- gelatinous edema -RRB- on the skin of the head	Gtype
GSE46507	clinical signs of swollen head syndrome	Gtype
GSE46507	strain : O08 -LRB- O38 : H10 -RRB- obtained from the yolk of the abdomen of a diseased 1-day-old chick	Gtype
GSE46507	culture 	O
GSE46507	LB -LRB- OD = 0.87 -RRB-	Gtype
GSE46507	Escherichia coli K12 str MG1655	Gtype
GSE46541	RNA-Seq 	O
GSE46541	strain : K12	Gtype
GSE46541	substrain : MG1655	Gtype
GSE46541	M9 + 4 g	Supp
GSE46541	cra KO	Phase
GSE46541	library type	Gtype
GSE46541	library type	Gtype
GSE46541	genotype 	O
GSE46541	growth stage : mid exponetial phase	Gtype
GSE46541	Mid log _ cra KO _ glc minimal media _ aerobic	Gtype
GSE46541	Mid log _ cra KO _ glc minimal media + L-tryptophan _ aerobic	Gtype
GSE46541	Mid log _ wildtype _ glc minimal media + adenine _ aerobic	Gtype
GSE46541	Mid log _ wildtype _ glc minimal media	Gtype
GSE46541	Mid log _ wildtype _ glc minimal media	Gtype
GSE46541	Mid log _ wildtype _ glc minimal media _ aerobic rep3	Gtype
GSE46541	Mid log _ wildtype _ glc minimal media	Gtype
GSE46541	Mid log _ wildtype _ glc minimal media	Gtype
GSE46541	Mid log _ wildtype _ glc minimal media _ anaerobic rep3	Gtype
GSE46541	Mid log _ wildtype _ glc minimal media + L-tryptophan _ aerobic	Gtype
GSE46541	mntR KO	Phase
GSE46541	nac KO	Phase
GSE46541	oxygen condition : aerobic	Gtype
GSE46541	oxygen condition : anaerobic	Gtype
GSE46541	RNA-Seq 	O
GSE46541	supplementation : adenine -LRB- 10 mM -RRB-	Gtype
GSE46541	supplementation : L-tryptophan -LRB- 20 mg	Gtype
GSE46541	supplementation : None	Gtype
GSE46541	WT + L-trp	Gtype
GSE46541	23A1 	O
GSE46541	23B1 	O
GSE46541	23C3 	O
GSE46541	39A1 	O
GSE46541	39B1 	O
GSE46541	39C1 	O
GSE46541	genotype 	Gtype
GSE46541	RNA-Seq 	O
GSE46541	tab-delimited text files include count values	Gtype
GSE46541	WTA1 	O
GSE46541	WTB1 	O
GSE46541	WTC3 	O
GSE46541	condition : osmotic pressure	Gtype
GSE46541	condition : regular	Gtype
GSE46541	condition : starvation	Gtype
GSE46541	condition : temperature change	Gtype
GSE46541	on the finite hybridisation -LRB- FH -RRB- model -LRB- Ono et al , 2008 -RRB- and the thermodynamic model of non-specific binding -LRB- NSB -RRB- on short nucleotide	Gtype
GSE46541	strain : MDS42	Gtype
GSE46737	Control Wild type E.coli SE15 vs. LuxS mutant E.coli SE15	Gtype
GSE46737	genotype 	O
GSE46737	strain : SE15	Gtype
GSE46737	Wild type E.coli SE15 vs. LuxS mutant E.coli SE15	Gtype
GSE46737	Anti-FLAG -LRB- sigma-aldrich cat no F3165 -RRB-	Gtype
GSE46737	none , input	Anti
GSE46737	normal rabbit IgG -LRB- Upstate Biotechnology , Cat	Gtype
GSE46737	CSH50 control E-minimal medium 90 min	Gtype
GSE46737	CSH50 control -LRB- mock igG -RRB- E-minimal medium replicate 1	Gtype
GSE46737	CSH50 control -LRB- mock igG -RRB- E-minimal medium replicate 2	Gtype
GSE46737	CSH50 E-minimal medium pH 4.5 90 min	Gtype
GSE46737	CSH50 E-minimal medium pH 4.5 90 min replicate 1	Gtype
GSE46737	CSH50 E-minimal medium pH 4.5 90 min replicate 2	Gtype
GSE46737	CSH50 E-minimal medium pH 4.5 90 min replicate 3	Gtype
GSE46737	CSH50 E-minimal medium pH 7 90 min	Gtype
GSE46737	CSH50 E-minimal medium pH 7 90 min replicate 1	Gtype
GSE4690	CSH50 E-minimal medium pH 7 90 min replicate 2	Gtype
GSE4690	CSH50 E-minimal medium pH 7 90 min replicate 3	Gtype
GSE4690	strain : CSH50	Gtype
GSE4690	final volume of 20 ml 1X EG minimal medium of the same pH	Gtype
GSE4690	cells 	O
GSE4690	strain : CMCC -LRB- B -RRB- 44102	Gtype
GSE4690	treatment : bicontinious microemulsion	Gtype
GSE4690	treatment : control	Gtype
GSE4690	treatment : oil in water	Gtype
GSE4690	treatment : water in oil	Gtype
GSE4690	20 min	Supp
GSE4690	20 min	Supp
GSE4690	20 min	Supp
GSE47589	strain : Wild type strain MG1655	Gtype
GSE47589	time : 10 min	Gtype
GSE47589	time : 10 min	Gtype
GSE47589	20 min	Supp
GSE47589	time : 2.5 min	Gtype
GSE47589	time : 40 min	Gtype
GSE47589	time : 5 min	Gtype
GSE47589	time : 80 min	Gtype
GSE48015	anti-FLAG antibody	Anti
GSE48015	F3165-1MG -RRB-	Gtype
GSE48151	ChIP-Seq 	O
GSE48151	genome build : ASM584v1	Gtype
GSE48151	contents : reference seq,co-ordinate start position,co-ordinate end	Gtype
GSE48151	content : format : bed format	Gtype
GSE48151	final concentration of 25ug mL-1	Gtype
GSE48151	2xOriT 	Gtype
GSE48151	A2 , osmotolerant mutant	Gtype
GSE48151	A2 Replicate 1	Gtype
GSE48151	A2 Replicate 2	Gtype
GSE48151	A4 , osmotolerant mutant	Gtype
GSE48151	A4 Replicate 1	Gtype
GSE48151	A4 Replicate 2	Gtype
GSE48151	average fitness : 0.196851676684606	Gtype
GSE48151	average fitness : 0.296737932583603	Gtype
GSE48151	average fitness : 0.344592279464807	Gtype
GSE48151	average fitness : 0.353076289611459	Gtype
GSE48151	average fitness : 0.434286415079969	Gtype
GSE48324	average fitness : 0.502711019240335	Gtype
GSE48324	statistical significance using the MeV package	Gtype
GSE48324	G2 , osmotolerant mutant	Gtype
GSE48324	G2 Replicate 1	Gtype
GSE48324	G2 Replicate 2	Gtype
GSE48324	G3 , osmotolerant mutant	Gtype
GSE48324	G3 Replicate 1	Gtype
GSE48324	G3 Replicate 2	Gtype
GSE48324	G5 , osmotolerant mutant	Gtype
GSE48324	G5 Replicate 1	Gtype
GSE48324	G5 Replicate 2	Gtype
GSE48324	G6 , osmotolerant mutant	Gtype
GSE48324	G6 Replicate 1	Gtype
GSE48324	G6 Replicate 2	Gtype
GSE48324	genotype 	Gtype
GSE48324	0.55 M NaCl	Supp
GSE48324	population : A2	Gtype
GSE48324	population : A4	Gtype
GSE48324	population : G2	Gtype
GSE48324	population : G3	Gtype
GSE48324	population : G5	Gtype
GSE48324	population : G6	Gtype
GSE48324	strain description : E. coli BW25113	Gtype
GSE48324	strain description : E. coli BW25113	Gtype
GSE48324	strain : unevolved parent strain	Gtype
GSE48324	standard protocol	Gtype
GSE48324	the first pass , we use paired end color space mapping	Gtype
GSE48324	improve the overall alignment we mapped the orphan 5	Gtype
GSE48324	phase of growth : 15 min post stationary	Gtype
GSE48324	phase of growth : 180 min post stationary	Gtype
GSE48324	30 min post stationary	Gtype
GSE48324	phase of growth : Late log phase OD 1.6	Gtype
GSE48324	phase of growth : Log phase OD 0.1	Gtype
GSE48324	phase of growth : Log phase OD 0.2	Gtype
GSE48324	phase of growth : Log phase OD 0.3	Gtype
GSE48324	phase of growth : Log phase OD 0.4	Gtype
GSE48324	phase of growth : Log phase OD 0.8	Gtype
GSE48324	phase of growth : Log phase OD 1.4	Gtype
GSE48829	RNA-Seq 	O
GSE48829	rna treatment : no RNA treatment	Gtype
GSE48829	rna treatment : rRNA depleted	Gtype
GSE48829	rna treatment : rRNA depleted ; Terminal Exonuclease	Gtype
GSE48829	30 min	Supp
GSE48829	30 min	Supp
GSE48829	30 min	Supp
GSE48829	conversion of the sample alignment -LRB- BAM -RRB- files to strand-specific base count -LRB- WIG -RRB-	Gtype
GSE48829	sub strain : BW38028	Gtype
GSE48829	sub strain : BW39452	Gtype
GSE49296	Wild type	Gtype
GSE49296	WT _ 02 _ rep1	O
GSE49296	WT _ 03 _ rep1	O
GSE49296	WT _ 04 _ rep1	O
GSE49296	WT _ 04 _ rep2	O
GSE49296	WT _ 04-R _ rep1	O
GSE49296	WT _ 04 _ TEX	O
GSE49296	WT _ 14 _ rep1	O
GSE49296	WT _ 15 min _ rep1	O
GSE49296	WT _ 16 _ rep1	O
GSE49296	WT _ 16-R _ rep1	O
GSE49296	WT _ 180 min _ rep1	O
GSE49296	WT _ 30 min _ rep1	O
GSE49296	WT _ 30 min _ rep2	O
GSE49296	WT _ 30min-R _ rep1	O
GSE49296	WT _ 30 min _ TEX	O
GSE49296	genomic dna	Gtype
GSE49296	genomic DNA	Gtype
GSE49296	ration of median -LRB- 635	Gtype
GSE49296	Ratio of median	Gtype
GSE49296	reference DNA	Phase
GSE49914	SB1 genomic DNA	Gtype
GSE50713	Shigella boydii	Phase
GSE50713	Shigella boydii 13	Gtype
GSE50713	Shigella boydii 14	Gtype
GSE50713	Shigella boydii 15	Gtype
GSE50713	Shigella boydii 15	Gtype
GSE50713	Shigella boydii 16	Gtype
GSE50713	Shigella boydii 17	Gtype
GSE50713	Shigella boydii 18	Gtype
GSE50713	Shigella boydii serogroup 1	Gtype
GSE50713	Shigella boydii serogroup 2	Gtype
GSE50713	Shigella boydii serotype 1	Gtype
GSE50713	Shigella boydii serotype 10	Gtype
GSE50713	Shigella boydii serotype 11	Gtype
GSE50713	Shigella boydii serotype 12	Gtype
GSE50713	Shigella boydii serotype 13	Gtype
GSE50713	Shigella boydii serotype2	Gtype
GSE50713	Shigella boydii serotype 2	Gtype
GSE50713	Shigella boydii serotype3	Gtype
GSE50713	Shigella boydii serotype 3	Gtype
GSE50713	Shigella boydii serotype 5	Gtype
GSE50713	Shigella boydii serotype 6	Gtype
GSE50713	Shigella boydii serotype 7	Gtype
GSE50713	Shigella boydii serotype 7	Gtype
GSE50713	Shigella boydii serotype 8	Gtype
GSE50713	Shigella boydii serotype 9	Gtype
GSE50713	Shigella dysenteriae	Phase
GSE50713	Shigella dysenteriae 10	Gtype
GSE50713	Shigella dysenteriae 11	Gtype
GSE50713	Shigella dysenteriae 12	Gtype
GSE50828	Shigella dysenteriae 13	Gtype
GSE50828	Shigella dysenteriae 2	Gtype
GSE50828	Shigella dysenteriae 4	Gtype
GSE50828	Shigella dysenteriae 5	Gtype
GSE50828	Shigella dysenteriae 6	Gtype
GSE50828	Shigella dysenteriae 7	Gtype
GSE50828	Shigella dysenteriae 8	Gtype
GSE50828	Shigella flexneri	Phase
GSE50828	Shigella flexneri 1a	Gtype
GSE50828	Shigella flexneri 1b	Gtype
GSE50828	Shigella flexneri 2b	Gtype
GSE50828	Shigella flexneri 4a	Gtype
GSE51582	Shigella flexneri 4b	Gtype
GSE51582	Shigella flexneri 5	Gtype
GSE51582	Shigella flexneri 6	Gtype
GSE51582	Shigella flexneri variant x	Gtype
GSE51582	Shigella flexneri variant y	Gtype
GSE51582	composition -LRB- g l-1 -RRB- : 8 , glucose ; 14.6 , K2HPO4 ; 3.6 , NaH2PO4 · H2O ; 2.68 , -LRB- NH4 -RRB- 2SO4 ; 2 , Na2SO4 ; 1 , MgSO4 ; 1 , Na-citrate ; 0.5 , NH4Cl ; 2 ml of 10 mg l-1 of thiamine ; 3 ml of trace element solution -LRB- g l-1 20.0 , Na-EDTA ; 15.0 , FeCl3 · 6H2O ; 0.5 , CaCl2 · 2H2O ; 0.2 , ZnSO4 · 7H2O ; 0.2 , CoCl2 · 6H2O ; 0.2 , CuSO4 · 5H2O ; 0.2 , MnSO4 · 4H2O -RRB- . The chemostat	Gtype
GSE51582	BL21 	O
GSE51582	BL21 -LRB- mu = 0.20 -RRB- -LRB- 1 -RRB-	Gtype
GSE51582	BL21 -LRB- mu = 0.20 -RRB- -LRB- 2 -RRB-	Gtype
GSE51582	BL21 -LRB- mu = 0.20 -RRB- -LRB- 3 -RRB-	Gtype
GSE51582	BL21 -LRB- mu = 0.20 -RRB- -LRB- 4 -RRB-	Gtype
GSE51582	BL21 -LRB- mu = 0.46 -RRB- -LRB- 1 -RRB-	Gtype
GSE51582	BL21 -LRB- mu = 0.46 -RRB- -LRB- 2 -RRB-	Gtype
GSE51582	BL21 -LRB- mu = 0.46 -RRB- -LRB- 3 -RRB-	Gtype
GSE51582	BL21 -LRB- mu = 0.46 -RRB- -LRB- 4 -RRB-	Gtype
GSE51582	Escherichia coli BL21 -LRB- mu = 0.20 -RRB-	Gtype
GSE51582	Escherichia coli BL21 -LRB- mu = 0.46 -RRB-	Gtype
GSE51582	Genotype : F - ompT hsdSB -LRB- rB-mB - -RRB- gal dcm -LRB- DE3 -RRB-	Gtype
GSE51582	to the manufacturer 's instructions	Gtype
GSE51582	condition : 37ºC	Gtype
GSE51582	condition : 45ºC	Gtype
GSE51582	E. coli Type	Gtype
GSE51611	E. coli Type	Gtype
GSE51611	E. coli Type	Gtype
GSE51611	E. coli Type	Gtype
GSE51611	on the finite hybridisation -LRB- FH -RRB- model -LRB- Ono et al , 2008 -RRB- and the thermodynamic model of non-specific binding -LRB- NSB -RRB- on short nucleotide	Gtype
GSE51611	strain : DH1ΔleuB : : gfpuv5-kmr	Gtype
GSE51611	E. coli MG1655-MOPS +2 % Dextrose	Gtype
GSE51611	E. coli MG1655-MOPS +2 % Dextrose +10 mM C8	Gtype
GSE51611	10 mM octanoic acid -LRB- pH = 7.0 -RRB-	Gtype
GSE51611	strain : MG1655	Gtype
GSE51611	mRNA 	O
GSE51611	Transcriptional response of E. coli to TPEN -LRB- m1 -RRB-	Gtype
GSE51611	Transcriptional response of E. coli to TPEN -LRB- m2 -RRB-	Gtype
GSE51611	Transcriptional response of E. coli to TPEN -LRB- m3 -RRB-	Gtype
GSE51611	Transcriptional response of E. coli to TPEN -LRB- t1 -RRB-	Gtype
GSE51611	Transcriptional response of E. coli to TPEN -LRB- t2 -RRB-	Gtype
GSE51611	Transcriptional response of E. coli to TPEN -LRB- t3 -RRB-	Gtype
GSE52059	bacteria 	O
GSE52059	NC000913 .2	Gtype
GSE52059	mRNA-seq in rich defined media	Med
GSE52059	RNA-Seq 	O
GSE52059	strain : MG1655	Gtype
GSE52059	Streptococcus pneumoniae D39 -LRB- assembly ASM1436v1 -RRB-	Gtype
GSE52059	genotype 	Gtype
GSE52059	molecule subtype : total RNA , rRNA depleted	Gtype
GSE52059	OTHER 	Gtype
GSE52059	Reads Per Kilobase of exon per Megabase of library size -LRB- RPKM -RRB-	Gtype
GSE52059	by the size of the meta-transcript and by the size of the library	Gtype
GSE52059	RNA-Seq 	O
GSE52059	strain : JM83	Gtype
GSE52059	tab-delimited text files include RPKM values	Gtype
GSE52059	0.5 μg	Gtype
GSE52059	none -LRB- untreated control -RRB-	Gtype
GSE52059	min 1 mM IPTG	Supp
GSE52059	min 1 mM IPTG	Supp
GSE52059	genotype 	O
GSE52059	overexpression of arT -LRB- pCA24N _ arT -RRB-	Gtype
GSE52059	overexpression of empty vector -LRB- pCA24N -RRB-	Gtype
GSE52059	exponential phase in glucose minimal medium in the presence of the osmoprotectant glycine beatine	Gtype
GSE5212	growth phase : exponential	Gtype
GSE5212	growth phase : Exponential	Gtype
GSE5212	strain : K12	Gtype
GSE5212	compare different environmental conditions , the cDNA signal in each condition was normalised to that of gDNA with M = ln -LRB- cDNA	Gtype
GSE5212	0.5 mg	Gtype
GSE5212	antibody : anti-DksA rabbit polyclonal antisera	Gtype
GSE5212	antibody : anti-RNAP b subunit NT63 monoclonal antibodies	Gtype
GSE5212	anti-s70 monoclonal antibodies	Anti
GSE5212	antibody : None , input DNA	Gtype
GSE5212	wt cells	Gtype
GSE5212	DksA _ DdksA _ untreated	Gtype
GSE5212	wt _ untreated _ rep1	Gtype
GSE5212	wt _ untreated _ rep2	Gtype
GSE5212	genotype : MG1655	Gtype
GSE5212	genotype : MG1655 DdksA	Gtype
GSE5212	Input DNA from wt cells	Gtype
GSE5212	None 	Gtype
GSE5212	wt cells	Gtype
GSE5212	wt _ SHX _ rep1	O
GSE5212	wt _ SHX _ rep2	O
GSE5212	wt _ untreated _ rep1	Gtype
GSE5212	wt _ untreated _ rep2	Gtype
GSE5212	wt cells	Gtype
GSE5212	wt _ SHX _ rep1	O
GSE5212	wt _ SHX _ rep2	O
GSE5212	wt _ untreated _ rep1	Gtype
GSE5212	wt _ untreated _ rep2	Gtype
GSE5212	treatment : 0.5 mg	Gtype
GSE5212	DPD and rifampicin	Supp
GSE5212	Fe and rifampicin	Supp
GSE5212	ChIP-Seq 	O
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	genotype 	Gversion
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	-LRB- ChIP-exo -RRB-	Technique
GSE5212	Tab-delimited text files in gff format which has 8 columns : sequence id , source -LRB- empty -RRB- , feature -LRB- +	Gtype
GSE5212	genotype 	Gversion
GSE5212	Reads Per Kilobase of exon per Megabase of library size -LRB- RPKM -RRB-	Gtype
GSE5212	RNA-Seq 	O
GSE5212	Comma-delimited text file includes RPKM values	Gtype
GSE5212	WT with DPD 1	O
GSE5212	-LRB- RNA-seq -RRB-	Technique
GSE5212	WT with DPD 2	O
GSE5212	-LRB- RNA-seq -RRB-	Technique
GSE5212	WT with Fe 1	O
GSE5212	-LRB- RNA-seq -RRB-	Technique
GSE5212	WT with Fe 2	O
GSE5212	-LRB- RNA-seq -RRB-	Technique
GSE5212	Δfur with DPD 1	O
GSE5212	-LRB- RNA-seq -RRB-	Technique
GSE5212	Δfur with DPD 2	O
GSE5212	-LRB- RNA-seq -RRB-	Technique
GSE5212	Δfur with Fe 1	O
GSE5212	-LRB- RNA-seq -RRB-	Technique
GSE5212	Δfur with Fe 2	O
GSE5212	-LRB- RNA-seq -RRB-	Technique
GSE5212	20 min	Supp
GSE5212	20 min	Supp
GSE5212	CORM-3 addition -LRB- t = 0 -RRB-	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 1 _ Cy3 0 Cy5 120	Gtype
GSE5212	Wild type	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 1 _ Cy3 120 Cy5 0	Gtype
GSE5212	Wild type	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 1 _ Cy3 40 Cy5 0	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 1 _ Cy3 60 Cy5 0	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 2 _ Cy3 0 Cy5 10	Gtype
GSE5212	Wild type	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 2 _ Cy3 0 Cy5 120	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 2 _ Cy3 0 Cy5 40	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 2 _ Cy3 0 Cy5 60	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 2 _ Cy3 10 Cy5 0	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 2 _ Cy3 120 Cy5 0	Gtype
GSE5212	Wild type	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 2 _ Cy3 40 Cy5 0	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 2 _ Cy3 60 Cy5 0	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 1 _ Cy3 0 Cy5 10	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 1 _ Cy3 0 Cy5 20	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 1 _ Cy3 0 Cy5 40	Gtype
GSE5212	Wild type _ CORM-3 _ biol rep 1 _ Cy3 0 Cy5 60	Gtype
GSE5212	Slide 16 _ hemA _ CORM-3 _ biol rep 2 _ Cy3 0 Cy5 120	Gtype
GSE5212	Slide 16 _ hemA _ CORM-3 _ biol rep 2 _ Cy3 0 Cy5 40	Gtype
GSE5212	Slide 16 _ hemA _ CORM-3 _ biol rep 2 _ Cy3 0 Cy5 60	Gtype
GSE5212	Slide 17 _ hemA _ CORM-3 _ biol rep 1 _ Cy3 0 Cy5 120	Gtype
GSE5212	Slide 17 _ hemA _ CORM-3 _ biol rep 1 _ Cy3 0 Cy5 40	Gtype
GSE5212	Slide 17 _ hemA _ CORM-3 _ biol rep 1 _ Cy3 0 Cy5 60	Gtype
GSE5212	Slide 34 _ hemA _ iCORM-3 _ biol rep 1 _ Cy3 0 Cy5 120	Gtype
GSE5212	Slide 34 _ hemA _ iCORM-3 _ biol rep 1 _ Cy3 0 Cy5 40	Gtype
GSE5212	Slide 34 _ hemA _ iCORM-3 _ biol rep 1 _ Cy3 0 Cy5 60	Gtype
GSE5212	Slide 35 _ hemA _ iCORM-3 _ biol rep 2 _ Cy3 0 Cy5 120	Gtype
GSE5212	Slide 35 _ hemA _ iCORM-3 _ biol rep 2 _ Cy3 0 Cy5 40	Gtype
GSE5212	Slide 35 _ hemA _ iCORM-3 _ biol rep 2 _ Cy3 0 Cy5 60	Gtype
GSE5239	hemA vs. WT t = 0 _ biol rep 1 _ Cy3 hemA Cy5 WT	Gtype
GSE5239	hemA vs. WT t = 0 _ biol rep 2 _ Cy3 hemA Cy5 WT	Gtype
GSE5239	Cy3 WT Cy5 hemA	Gtype
GSE5239	strain : hemA strain MG1655	Gtype
GSE5239	strain : Wild type strain MG1655	Gtype
GSE5239	20 min	Supp
GSE5239	20 min	Supp
GSE52770	prior to CORM-3 addition -LRB- t = 0 -RRB-	Gtype
GSE52770	prior to iCORM-3 addition -LRB- t = 0 -RRB-	Gtype
GSE52770	Demultiplexing 	O
GSE52770	growth phase : exponential	Gtype
GSE52770	growth phase : stationary	Gtype
GSE52770	Hot phenol -LRB- Sharma et al.	Gtype
GSE53140	M63 0.4 B1 TEX neg L1 GA	Gtype
GSE5356	medium : LB	Gtype
GSE5356	medium : M63	Gtype
GSE5356	segemehl version 0.13 -LRB- TRAPL -RRB-	Gtype
GSE5356	RNA-Seq 	Gtype
GSE5356	strain : MG1655	Gtype
GSE5356	content : wiggle	Gtype
GSE5356	tobacco acid pyrophosphatase -LRB- TAP -RRB- followed by the ligation of the RNA adapter to the 5 ' - monophosphate of the RNA	Gtype
GSE5356	wild type	Gtype
GSE53767	NH4Cl _ NO3	Supp
GSE53767	delta-fnr _ glucose	Gtype
GSE53767	delta-fnr _ glucose	Gtype
GSE53767	delta-fnr _ glucose	Gtype
GSE53767	delta-fnr _ glucose	Gtype
GSE53767	delta-fnr _ glucose	Gtype
GSE53767	NH4Cl _ NO3	Supp
GSE53767	delta-fnr _ glucose	Gtype
GSE53767	delta-fnr _ glucose	Gtype
GSE53767	delta-fnr _ glucose	Gtype
GSE53767	wt _ glucose _ NH4CL _	O
GSE53767	wt _ glucose _ NH4CL _ anaerobic _ 1 . CEL	O
GSE53767	wt _ glucose _ NH4CL _ anaerobic _ 2 . CEL	O
GSE54199	wt _ glucose _ NH4CL _ anaerobic _ 3 . CEL	O
GSE54199	wt _ glucose _	O
GSE54199	NH4Cl _ NO3	Supp
GSE54199	wt _ glucose _ NH4Cl _ NO3 _ 1 . CEL	O
GSE54199	wt _ glucose _ NH4Cl _ NO3 _ 2 . CEL	O
GSE54199	wt _ glucose _ NH4Cl _ NO3 _ 3 . CEL	O
GSE54199	0.2 % -LRB- w	Gtype
GSE54199	culture condition : anaerobic fermentive condition	Gtype
GSE54199	culture condition : nitrate respiratory condition	Gtype
GSE54199	genotype 	Substrain
GSE54199	both the wild type	Gtype
GSE54199	biotin conjugated anti-c-myc antibody	Gtype
GSE54199	HRP-conjugated sheep anti-mouse IgG	Gtype
GSE54512	genotype 	Substrain
GSE54512	background strain : BW25113	Gtype
GSE54669	genotype 	O
GSE54669	Non-treated , fur mutant sample at T0 , biological rep 1	Gtype
GSE54669	Non-treated , fur mutant sample at T0 , biological rep 2	Gtype
GSE54669	Non-treated , WT control at T0 , biological rep 1	Gtype
GSE54669	Non-treated , WT control at T0 , biological rep 2	Gtype
GSE54669	We compared the microarray-determined mRNA	Gtype
GSE54669	WT _ CPR _ 2	O
GSE54669	WT _ noCPR _ 1	Gtype
GSE54669	WT _ noCPR _ 2	O
GSE54669	condition : histidine depleted	Gtype
GSE54669	condition : histidine supplied , 1 mM	Gtype
GSE54669	on the finite hybridisation -LRB- FH -RRB- model -LRB- Ono et al , 2008 -RRB- and the thermodynamic model of non-specific binding -LRB- NSB -RRB- on short nucleotide microarrays -LRB- Furusawa et al , 2009 -RRB- . The log10 mRNA concentration -LRB- pM -RRB- data are provided as a supplementary file on the SERIES record .	Gtype
GSE55097	strain : DH1 ΔhisA : : cat ΔintC : : Ptrc-dsred . t4-tetR-PEM7-zeo ΔgalK : : PtetA-gfpuv5	Gtype
GSE55097	strain : DH1 ΔhisB : : cat ΔintC : : Ptrc-dsred . t4-tetR-PEM7-zeo ΔgalK : : PtetA-gfpuv5	Gtype
GSE55097	strain : DH1 ΔhisC : : cat ΔintC : : Ptrc-dsred . t4-tetR-PEM7-zeo ΔgalK : : PtetA-gfpuv5	Gtype
GSE55097	strain : DH1 ΔhisD : : cat ΔintC : : Ptrc-dsred . t4-tetR-PEM7-zeo ΔgalK : : PtetA-gfpuv5	Gtype
GSE55097	strain : DH1 ΔhisF : : cat ΔintC : : Ptrc-dsred . t4-tetR-PEM7-zeo ΔgalK : : PtetA-gfpuv5	Gtype
GSE55097	strain : DH1 ΔhisG : : cat ΔintC : : Ptrc-dsred . t4-tetR-PEM7-zeo ΔgalK : : PtetA-gfpuv5	Gtype
GSE55097	strain : DH1 ΔhisI : : cat ΔintC : : Ptrc-dsred . t4-tetR-PEM7-zeo ΔgalK : : PtetA-gfpuv5	Gtype
GSE55097	strain : DH1 ΔintC : : Ptrc-dsred . t4-tetR-PEM7-zeo ΔgalK : : PtetA-gfpuv5	Gtype
GSE55097	Ecoli _ control _ 5h _ rep3	Gtype
GSE55097	Ecoli _ control _ 5h _ rep4	Gtype
GSE55097	NP-TiO2 _ 5h _ rep3	Gtype
GSE55097	NP-TiO2 _ 5h _ rep4	Gtype
GSE55097	incubation condition : In the dark , 5h , 20 °C , 150 rpm	Gtype
GSE55097	incubation medium : 10 mM NaCl	Gtype
GSE55097	10 mM NaCl + 100 mg	Supp
GSE55097	∆ mazEF	Gtype
GSE55097	genotype : ∆ mazEFlexA3	Gtype
GSE55097	∆ mazEF 0 μg	Gtype
GSE55097	∆ mazEF 100 μg	Gtype
GSE55097	∆ mazEF 10 μg	Gtype
GSE55097	∆ mazEFlexA3 0 μg	Gtype
GSE55097	∆ mazEFlexA3 100 μg	Gtype
GSE55097	∆ mazEFlexA3 10 μg	Gtype
GSE55097	sample type : E. coli strain MC4100relA	Gtype
GSE55097	sample type : E. coli strain MC4100relA	Gtype
GSE55097	sample type : E. coli strain MC4100relA	Gtype
GSE55097	sample type : E. coli strain MC4100relA + ∆ mazEF in mid log	Gtype
GSE55097	sample type : E. coli strain MC4100relA + ∆ mazEF in mid log	Gtype
GSE55199	sample type : E. coli strain MC4100relA + ∆ mazEF in mid log	Gtype
GSE55199	sample type : E. coli strain MC4100relA + ∆ mazEFlexA3 in mid log	Gtype
GSE55199	sample type : E. coli strain MC4100relA + ∆ mazEFlexA3 in mid log	Gtype
GSE55199	sample type : E. coli strain MC4100relA + ∆ mazEFlexA3 in mid log	Gtype
GSE55199	treatment : 0 μg	Gtype
GSE55199	treatment : 100 μg	Gtype
GSE55199	treatment : 10 μg	Gtype
GSE55199	WT 0 μg	Gtype
GSE55199	WT 100 μg	Gtype
GSE55199	WT 10 μg	Gtype
GSE55199	Aerobic culture	Gtype
GSE55199	ethanol treatment : 40 g EtOH	Gtype
GSE55199	ethanol treatment : no ethanol exposure	Gtype
GSE55199	, \ low ribosome occupancy \ , and \ high ribosome occupancy \ gene sets -RRB-	Gtype
GSE55199	1295-1308 -LRB- PMCID : PMC3277850 -RRB-	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T0 RNA rep 1	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T0 RNA rep 2	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T0 RP rep 1	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T0 RP rep 2	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T1 RNA rep 1	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T1 RNA rep 2	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T1 RP rep 1	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T1 RP rep 2	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T2 RNA rep 1	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T2 RNA rep 2	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T2 RP rep 1	Gtype
GSE55199	Mutant -LRB- EP61 -RRB- T2 RP rep 2	Gtype
GSE55199	ribosome-protected : No	Gtype
GSE55199	ribosome-protected : Yes	Gtype
GSE55199	RNA-Seq 	Gtype
GSE55199	strain : EP61	Gtype
GSE55365	strain : MG1655	Gtype
GSE55365	\ as the final character in the file name cover the minus strand of the genome ; those with a \ + \ as the final character in the file name cover the plus strand of the genome .	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T0 RNA rep 2	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T0 RP rep 1	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T0 RP rep 2	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T1 RNA rep 1	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T1 RNA rep 2	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T1 RP rep 1	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T1 RP rep 2	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T2 RNA rep 1	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T2 RNA rep 2	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T2 RP rep 1	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- T2 RP rep 2	Gtype
GSE55365	Aerobic culture	Gtype
GSE55365	ASM584v1 , U00096 .2	Gversion
GSE55365	Mutant -LRB- RL2325 -RRB- RNA-seq	Gtype
GSE55365	RNA-Seq 	Gtype
GSE55365	short oligonucleotide alignment program -LRB- SOAP -RRB-	Gtype
GSE55365	strain : MG1655	Gtype
GSE55365	strain : RL2325	Gtype
GSE55365	cover the minus strand of the genome ; those with designated \ plus \ cover the plus strand of the genome .	Gtype
GSE55365	Wild-type -LRB- MG1655 -RRB- RNA-seq	Gtype
GSE55365	Bacteria 	Gtype
GSE55366	NC _ 000913	Gversion
GSE55366	genotype 	Gversion
GSE55366	molecule subtype : Total RNA	Gtype
GSE55366	RNA-Seq 	Gtype
GSE55366	strain background : MG1655	Gtype
GSE55366	EvgSc mutant rep 1	Gtype
GSE55366	EvgSc mutant rep 2	Gtype
GSE55366	EvgSc ompR double mutant rep 1	Gtype
GSE55366	EvgSc ompR double mutant rep 2	Gtype
GSE55366	genotype : EvgSc KO	Gtype
GSE55366	genotype : EvgSc ompR KO	Gtype
GSE55366	genotype : ompR KO	Gtype
GSE55366	Wild Type	Gtype
GSE55366	LB media	Med
GSE55366	ompR mutant rep 1	Gtype
GSE55366	ompR mutant rep 2	Gtype
GSE55662	strain : MG1655	Gtype
GSE55662	wild type rep 1	Gtype
GSE55662	wild type rep 2	Gtype
GSE55662	WT _ 1	Gtype
GSE55662	WT _ 2	O
GSE55662	Automatic extractor in Verigene system of genomic DNA	Gtype
GSE55662	Blood culture	Phase
GSE55662	Blood culture bottle	Phase
GSE55662	gram status : Gram-negative	Gtype
GSE55662	Sample 79	Temp
GSE55662	source : Peripheral blood	Gtype
GSE55662	treatment : Supernatant	Gtype
GSE55662	OD600 = 0.55-0.6 culture	Gtype
GSE55662	genotype 	O
GSE55662	pFlag-only control	Gtype
GSE55662	RhIB wild type	Gtype
GSE55719	RhlBP238L mutant	Gtype
GSE55719	strain : BL21 -LRB- DE3 -RRB- rne131 DrhlB	Gtype
GSE55719	analysis : in vitro	Gtype
GSE55719	analysis : in vivo	Gtype
GSE55719	U00096 .2	Gversion
GSE55719	genotype : n	Gtype
GSE55719	genotype : rne-3071 -LRB- ts -RRB-	Gtype
GSE55719	genotype : rne wild-type	Gtype
GSE55719	genotype : rng mutant	Gtype
GSE55719	genotype : rng wild-type	Gtype
GSE55719	incubation time : 0 min	Gtype
GSE55719	incubation time : 10 min	Gtype
GSE55719	incubation time : n	Gtype
GSE55719	RNA-Seq 	O
GSE55719	rne-3071 ts	Med
GSE55719	rne wild-type	Gtype
GSE55719	rng mutant	Gtype
GSE55719	rng wild-type	Gtype
GSE55719	strain : BW25113	Gtype
GSE55719	strain : GM11	Gtype
GSE55719	strain : MC1061	Gtype
GSE55719	strain : N3431	Gtype
GSE55719	strain : N3433	Gtype
GSE55719	coordinates should be the same . Each line in the data set represents the position of the first nucleotide	Gtype
GSE55719	T170V 0 min	Gtype
GSE55719	T170V 10 min	Gtype
GSE55719	standard protocol	Gtype
GSE55719	genotype : rpoS	Gtype
GSE55719	30 min post stationary	Gtype
GSE55719	growth phase : Log phase OD 0.4	Gtype
GSE55719	RNA-Seq 	O
GSE55719	sample type : no RNA treatment	Gtype
GSE55719	conversion of the sample alignment -LRB- BAM -RRB- files to strand-specific base count -LRB- BigWIG -RRB-	Gtype
GSE55719	strain : BW38028	Gtype
GSE55719	Carbon starvation	Gtype
GSE55719	treatment : log phase sample	Gtype
GSE55719	treatment : Nitrogen starvation	Gtype
GSE55719	Wild type	Gtype
GSE55719	WT _ glucose _ log	O
GSE55719	WT _ glucose _ log _ TEX	O
GSE55719	WT _ glucose _ stat _ TEX	O
GSE55719	WT _ N _ strv _ TEX	O
GSE55719	bacterial cell culture	Gtype
GSE55719	anti-Flag -LRB- Sigma -RRB-	Anti
GSE55719	ChIP-Seq 	Anti
GSE55719	450μl of TES buffer -LRB- 50mM Tris-HCl pH 7.5 , 150mM NaCl -RRB- and 20μl of lysis solution -LRB- 13.6 mg	Gtype
GSE55719	genotype : wild type	Gtype
GSE55719	genotype : ΔbolA	Gtype
GSE55719	BWA tool -LRB- version 0.5.9 -RRB- against the reference genome	Gtype
GSE55719	Escherichia coli K12 MG1655 , version : iGenome	Gtype
GSE55719	strain : no tag	Gtype
GSE55719	strain : wt 3xflag strain	Gtype
GSE55719	wild type	Gtype
GSE55719	ΔbolA 	Gtype
GSE55719	bacteria 	O
GSE55719	NC000913 .2	Gtype
GSE55719	molecule subtype : mRNA	Gtype
GSE55719	molecule subtype : ribosome protected mRNA	Gtype
GSE55719	mRNA-seq in rich defined media	Med
GSE55719	mRNA-seq MicL-S t0	Gtype
GSE55719	mRNA-seq MicL-S t10	Gtype
GSE55719	mRNA-seq MicL-S t20	Gtype
GSE55719	mRNA-seq MicL-S t4	Gtype
GSE55719	mRNA-seq MicL t0	Gtype
GSE55719	mRNA-seq MicL t10	Gtype
GSE55719	mRNA-seq MicL t20	Gtype
GSE55719	mRNA-seq MicL t4	Gtype
GSE55719	mRNA-seq WT t10	Gtype
GSE55719	mRNA-seq WT t4	Gtype
GSE55719	plasmid : empty vector	Gtype
GSE55719	plasmid : pMicL	Gtype
GSE55719	plasmid : pMicL-S	Gtype
GSE55719	ribosome profiling in rich defined media	Gtype
GSE55719	RNA-Seq 	O
GSE55719	strain : MG1655	Gtype
GSE55719	biological replicate : 318	Gtype
GSE55719	biological replicate : 320	Gtype
GSE55719	biological replicate : 327	Gtype
GSE55719	1.25 ml ice-cold 5 % -LRB- vol	Gtype
GSE56251	growth phase : Exp	Gtype
GSE56251	growth phase : Stat1	Gtype
GSE56251	growth phase : Stat2	Gtype
GSE56251	medium : SynH	Gtype
GSE56251	medium : SynH _ LT	Gtype
GSE56251	robust multichip averaging -LRB- RMA -RRB- in the program ArrayStar -LRB- DNASTAR	Gtype
GSE56251	strain : GLBRCE1	Gtype
GSE56251	technical replicate : 1	Gtype
GSE56251	technical replicate : 2	Gtype
GSE56251	1.25 ml ice-cold 5 % -LRB- vol	Gtype
GSE56372	growth phase : Exp	Gtype
GSE56372	growth phase : Stat	Gtype
GSE56372	robust multichip averaging -LRB- RMA -RRB- in the program ArrayStar -LRB- DNASTAR	Gtype
GSE56372	strain : GLBRCE1	Gtype
GSE56372	strain : GLBRCE1 _ pBBR	Gtype
GSE56372	1.25 ml ice-cold 5 % -LRB- vol	Gtype
GSE56372	growth phase : log phase	Gtype
GSE56372	growth phase : stat 1	Gtype
GSE56372	growth phase : stat 2	Gtype
GSE56372	growth phase : transition	Gtype
GSE56372	medium : SynH	Gtype
GSE56407	SynH + LTs	Supp
GSE56407	medium : SynH w	Gtype
GSE56407	robust multichip averaging -LRB- RMA -RRB- in the program ArrayStar -LRB- DNASTAR	Gtype
GSE56407	strain : GLBRCE1	Gtype
GSE56407	1.25 ml ice-cold 5 % -LRB- vol	Gtype
GSE56407	growth phase : Exp	Gtype
GSE56407	growth phase : Exp1	Gtype
GSE56407	growth phase : Exp2	Gtype
GSE56407	growth phase : Exp3	Gtype
GSE56407	growth phase : Stat	Gtype
GSE56407	growth phase : Stat1	Gtype
GSE56407	growth phase : Stat2	Gtype
GSE56720	medium : SynH	Gtype
GSE56720	medium : SynH	Gtype
GSE56720	medium : SynH _ LT	Gtype
GSE56720	robust multichip averaging -LRB- RMA -RRB- in the program ArrayStar -LRB- DNASTAR	Gtype
GSE56720	strain : GLBRCE1	Gtype
GSE57784	Evolved strain C , time point 4	Gtype
GSE57784	Evolved strain C , time point 5	Gtype
GSE57784	Evolved strain D , time point 4	Gtype
GSE57784	Evolved strain D , time point 5	Gtype
GSE58285	Evolved strain E , time point 4	Gtype
GSE58285	Evolved strain E , time point 5	Gtype
GSE58285	Evolved strain F , time point 4	Gtype
GSE58285	Evolved strain F , time point 5	Gtype
GSE58285	Parent strain of experimental evolution	Gtype
GSE58285	Parent strain of experimental evolution as adaptive evolved E. coli W3110 strain to M9 synthetic medium without ethanol stress	Gtype
GSE58285	id design : EcFS _ 1	Gtype
GSE58285	id design : EcFS _ 2	Gtype
GSE58285	id design : EcFS	Gtype
GSE58285	strain C of experimental evolution under ethanol stress	Gtype
GSE58285	strain C of experimental evolution under ethanol stress	Gtype
GSE58285	strain C of experimental evolution under ethanol stress	Gtype
GSE58285	strain C of experimental evolution under ethanol stress	Gtype
GSE58285	strain C of experimental evolution under ethanol stress	Gtype
GSE58285	strain D of experimental evolution under ethanol stress	Gtype
GSE58285	strain D of experimental evolution under ethanol stress	Gtype
GSE58285	strain D of experimental evolution under ethanol stress	Gtype
GSE58285	strain D of experimental evolution under ethanol stress	Gtype
GSE58556	strain D of experimental evolution under ethanol stress	Gtype
GSE58556	strain E of experimental evolution under ethanol stress	Gtype
GSE58556	strain E of experimental evolution under ethanol stress	Gtype
GSE58556	strain E of experimental evolution under ethanol stress	Gtype
GSE58556	strain E of experimental evolution under ethanol stress	Gtype
GSE58556	strain E of experimental evolution under ethanol stress	Gtype
GSE58556	strain F of experimental evolution under ethanol stress	Gtype
GSE58556	strain F of experimental evolution under ethanol stress	Gtype
GSE58556	strain F of experimental evolution under ethanol stress	Gtype
GSE58556	strain F of experimental evolution under ethanol stress	Gtype
GSE58556	strain F of experimental evolution under ethanol stress	Gtype
GSE58556	1.25 ml ice-cold 5 % -LRB- vol	Gtype
GSE58556	growth phase : Exp	Gtype
GSE58556	growth phase : Stat1	Gtype
GSE58623	medium : SynH	Gtype
GSE58623	medium : SynH _ LT	Gtype
GSE58623	RNA-Seq 	O
GSE58623	strain : GLBRCE1	Gtype
GSE58637	is the cDNA . The actual size we use in selection will be larger , typically the target fragment size	Gtype
GSE58637	BW25113 HEPES-glu 30 min 4.5 % deoxycholate	Gtype
GSE58637	BW25113 ΔmqsRA HEPES-glu 30 min 4.5 % deoxycholate	Gtype
GSE58637	BW25113 ΔmqsRA with deoxycholate stress	Gtype
GSE58637	genotype 	O
GSE58637	0.2 ppm deoxynivalenol	Gtype
GSE58637	0.2 ppm nivalenol	Gtype
GSE58637	2 ppm deoxynivalenol	Gtype
GSE58637	2 ppm nivalenol	Gtype
GSE58637	acetonitrile 	Gtype
GSE58637	0.2 ppm	Gtype
GSE58637	concentration : 2 ppm	Gtype
GSE58637	condition : acetonitrile -LRB- control -RRB-	Gtype
GSE58637	condition : myxotoxin	Gtype
GSE58637	RNA-Seq 	O
GSE58637	K-12 substr . DH10B	O
GSE58637	content : txt : tab-delimited text files include RPKM values	Gtype
GSE58637	toxin : deoxynivalenol	Gtype
GSE58806	toxin : nivalenol	Gtype
GSE58806	genotype : PNPase mutant	Gtype
GSE58806	genotype : RNase II mutant	Gtype
GSE58806	genotype : RNase R mutant	Gtype
GSE58806	genotype : Wild-type	Gtype
GSE58806	Exponential Phase	Gtype
GSE58806	kanamycin , 50 mg ml-1 ; tetracycline , 20 mg ml-1 ; streptomycin	Gtype
GSE58806	∆ pnp	Gtype
GSE58806	RNA-Seq 	O
GSE58806	∆ rnb	Gtype
GSE58806	∆ rnr	Gtype
GSE58806	strain : K12-MG1693	Gtype
GSE58806	tab-delimited text files include RPKM values	Gtype
GSE58806	preliminary analysis of the high-throughput sequencing results which included the mapping of the reads against E. coli genome -LRB- NC	Gtype
GSE58806	estimates the relative abundance of the transcripts	Gtype
GSE58806	common reference -LRB- OD600 = 0.5 -RRB-	Gtype
GSE58806	= -LRB- log -LRB- Ts -RRB- + log -LRB- Rs -RRB- -RRB-	Gtype
GSE58806	OD : 0.1	Gtype
GSE58806	OD : 0.3	Gtype
GSE58806	OD : 0.4	Gtype
GSE58806	OD : 0.5	Gtype
GSE58806	OD : 0.6	Gtype
GSE58806	OD : 1.0	Gtype
GSE58806	OD : 1.3	Gtype
GSE58806	OD : 1.7	Gtype
GSE58806	OD : 2.7	Gtype
GSE58806	OD : 4.5	Gtype
GSE58806	OD : 4.7	Gtype
GSE58806	OD : 4.8	Gtype
GSE58806	Reference Design timecourse c _ t10 .2	Gtype
GSE58806	Reference Design timecourse c _ t1 .1	Gtype
GSE58806	Reference Design timecourse c _ t11 .1	Gtype
GSE58806	Reference Design timecourse c _ t11 .2	Gtype
GSE58806	Reference Design timecourse c _ t1 .2	Gtype
GSE58806	Reference Design timecourse c _ t2 .1	Gtype
GSE58806	Reference Design timecourse c _ t2 .2	Gtype
GSE58806	Reference Design timecourse c _ t3 .1	Gtype
GSE58806	Reference Design timecourse c _ t3 .2	Gtype
GSE58806	Reference Design timecourse c _ t4 .1	Gtype
GSE58806	Reference Design timecourse c _ t4 .2	Gtype
GSE58806	Reference Design timecourse c _ t5 .1	Gtype
GSE58806	Reference Design timecourse c _ t5 .2	Gtype
GSE58806	Reference Design timecourse c _ t6 .1	Gtype
GSE58806	Reference Design timecourse c _ t6 .2	Gtype
GSE58806	Reference Design timecourse c _ t7 .1	Gtype
GSE58806	Reference Design timecourse c _ t7 .2	Gtype
GSE58806	Reference Design timecourse c _ t8 .1	Gtype
GSE58806	Reference Design timecourse c _ t8 .2	Gtype
GSE58806	Reference Design timecourse c _ t9 .1	Gtype
GSE58806	Reference Design timecourse c _ t9 .2	Gtype
GSE58806	Strain : W3110	Gtype
GSE58806	time 10 -LRB- OD600 = 4.7 -RRB-	Gtype
GSE58806	time 11 -LRB- OD600 = 4.8 -RRB-	Gtype
GSE58806	time 1 -LRB- OD600 = 0.1 -RRB-	Gtype
GSE58806	time 5 -LRB- OD600 = 1.0 -RRB-	Gtype
GSE58902	time 6 -LRB- OD600 = 1.3 -RRB-	Gtype
GSE58902	time 7 -LRB- OD600 = 1.7 -RRB-	Gtype
GSE58902	time 8 -LRB- OD600 = 2.7 -RRB-	Gtype
GSE58902	time 9 -LRB- OD600 = 4.5 -RRB-	Gtype
GSE58902	Anti-myc -LRB- 9E10 -RRB-	Anti
GSE58902	ChIP-Seq 	O
GSE58902	substrain : MG1655	Gtype
GSE58902	content : gff file is generated by in-house script	Gtype
GSE58902	OH-CAAGCAGAAGACGGCATACGAGATNNNNNNGTGACTGGAGTTCAGACGTGT -RRB- . The degenerative sequence -LRB- the underlined 6Ns -RRB- in the P3 primer indicates the index sequence	Gtype
GSE58976	cy5 are comparable	Gtype
GSE58976	Strain MG1655	Phase
GSE58976	cy5 are comparable	Gtype
GSE58976	Strain MG1655	Phase
GSE58976	= -LRB- log -LRB- Ts -RRB- + log -LRB- Rs -RRB- -RRB-	Gtype
GSE58976	OD : 0.1	Gtype
GSE58976	OD : 0.3	Gtype
GSE58976	OD : 0.4	Gtype
GSE58976	OD : 0.6	Gtype
GSE58976	OD : 0.6	Gtype
GSE58976	OD : 1.0	Gtype
GSE58976	OD : 1.3	Gtype
GSE58976	OD : 1.7	Gtype
GSE58976	OD : 2.7	Gtype
GSE58976	OD : 4.5	Gtype
GSE58976	OD 4.5	Gtype
GSE58976	OD : 4.7	Gtype
GSE58976	OD : 4.8	Gtype
GSE58977	OD : OD 0.1	Gtype
GSE58977	Sequential Design timecourse t10 _ t11 .1	Gtype
GSE58977	Sequential Design timecourse t10 _ t11 .2	Gtype
GSE58977	Sequential Design timecourse t1 _ t2 .1	Gtype
GSE58977	Sequential Design timecourse t1 _ t2 .2	Gtype
GSE58977	Sequential Design timecourse t2 _ t3 .1	Gtype
GSE58977	Sequential Design timecourse t2 _ t3 .2	Gtype
GSE58977	Sequential Design timecourse t3 _ t4 .1	Gtype
GSE58977	Sequential Design timecourse t3 _ t4 .2	Gtype
GSE58977	Sequential Design timecourse t4 _ t5 .1	Gtype
GSE58977	Sequential Design timecourse t4 _ t5 .2	Gtype
GSE58977	Sequential Design timecourse t5 _ t6 .1	Gtype
GSE58977	Sequential Design timecourse t5 _ t6 .2	Gtype
GSE58977	Sequential Design timecourse t6 _ t7 .1	Gtype
GSE58977	Sequential Design timecourse t6 _ t7 .2	Gtype
GSE58977	Sequential Design timecourse t7 _ t8 .1	Gtype
GSE58977	Sequential Design timecourse t7 _ t8 .2	Gtype
GSE58977	Sequential Design timecourse t8 _ t9 .1	Gtype
GSE58977	Sequential Design timecourse t8 _ t9 .2	Gtype
GSE58977	Sequential Design timecourse t9 _ t10 .1	Gtype
GSE58977	Sequential Design timecourse t9 _ t10 .2	Gtype
GSE58977	Strain W3110	Phase
GSE58977	Strain : W3110	Gtype
GSE58977	Strain : W3110	Gtype
GSE58977	Strain : W3110	Gtype
GSE58977	Strian : W3110	Gtype
GSE58977	time 10 -LRB- OD600 = 4.7 -RRB-	Gtype
GSE58977	time 11 -LRB- OD600 = 4.8 -RRB-	Gtype
GSE58977	time 1 -LRB- OD600 = 0.1 -RRB-	Gtype
GSE58977	time 5 -LRB- OD600 = 1.0 -RRB-	Gtype
GSE58977	time 6 -LRB- OD600 = 1.3 -RRB-	Gtype
GSE58977	time 7 -LRB- OD = 1.7 -RRB-	Gtype
GSE58977	time 7 -LRB- OD600 = 1.7 -RRB-	Gtype
GSE58977	time 8 -LRB- OD = 2.7 -RRB-	Gtype
GSE58977	time 8 -LRB- OD600 = 2.7 -RRB-	Gtype
GSE58977	time 9 -LRB- OD600 = 4.5 -RRB-	Gtype
GSE58977	genotype : E. coli -LSB- supE44 hsdS20 -LRB- rB-mB - -RRB- recA13 ara-14 proA2 lacY1 galK2 rpsL20 xyl-5 mtl-1 -RSB-	Gtype
GSE58977	HB101 , biological rep3	Gtype
GSE59050	strain : HB101	Gtype
GSE59050	genotype 	O
GSE59050	Drosophila immune proteins	Gtype
GSE59050	GST alone -LRB- 3 μM ; control -RRB-	Gtype
GSE59050	incubation duration : 10 min	Gtype
GSE59050	strain : BW25113	Gtype
GSE59050	E. coli MG1655 minimal C	Gtype
GSE59050	E. coli MG1655 minimal C&N	Gtype
GSE59050	E. coli MG1655 minimal N	Gtype
GSE59050	strain : MG1655	Gtype
GSE59050	on-column DNase digestion with the RNase-Free DNase set -LRB- Qiagen -RRB-	Gtype
GSE59050	Cold Shock	Gtype
GSE59050	Heat Shock	Gtype
GSE59050	treatment : Low pH	Gtype
GSE59050	treatment : minimal C&N source	Gtype
GSE59397	treatment : minimal C source	Gtype
GSE59397	treatment : minimal N source	Gtype
GSE59397	treatment : Osmotic stress	Gtype
GSE59397	treatment : Oxidative stress	Gtype
GSE59397	treatment : UV	Gtype
GSE59397	condition : exponential growth , 36.9 ºC	Gtype
GSE59397	condition : exponential growth , 41.2 ºC	Gtype
GSE59397	condition : exponential growth , 43.2 ºC	Gtype
GSE59397	condition : exponential growth , 44.8 ºC	Gtype
GSE59397	condition : heat shock response , 44.8 ºC	Gtype
GSE60107	on the finite hybridisation -LRB- FH -RRB- model -LRB- Ono et al , 2008 -RRB- and the thermodynamic model of non-specific binding -LRB- NSB -RRB- on short nucleotide	Gtype
GSE60107	strain : DH1ΔleuB : : gfpuv5-kmr	Gtype
GSE60107	on the series record in the file \ GSE61749	Gtype
GSE60107	7 h biofilm cells	Gtype
GSE6033	7 h isatin biofilm cells	Gtype
GSE6033	7 h suspension cells	Gtype
GSE6033	EHEC wild type	Gtype
GSE6033	EHEC wild type	Gtype
GSE6033	EHEC wild type	Gtype
GSE6033	EHEC wild type	Gtype
GSE6033	cDNA library of the nascent RNA	Gtype
GSE6033	genotype 	O
GSE6033	molecule subtype : nascent 3 ' RNA	Gtype
GSE6033	Pause sites in E. coli wild-type strain identified by RNET-seq	Gtype
GSE6033	RNA-Seq 	O
GSE6033	The 200 ml eluate from the Ni-NTA agarose	Gtype
GSE6033	1.6-fold more total reads in the ΔgreAB strain . The high φ parameter allowed us to define a reliable pause-inducing element	Gtype
GSE6033	W3110 rpoC-6xHis : : kan gal490	Gtype
GSE6033	W3110 rpoC-6xHis : : kan greA : : tet , greB : : amp	Gtype
GSE6033	rRNA via the MICROBExpress kit -LRB- Ambion -RRB-	Gtype
GSE6033	calculate the gene expression level by the RPKM method , which is able to eliminate the influence of different gene length and sequencing discrepancy on the calculation of gene	Gtype
GSE6033	Bacterium 	O
GSE6033	In order to generate the VBNC state in E. coli O157 : H7 , 20 mL of the exponential-phase cell suspensions	Gtype
GSE6033	RNA-Seq 	O
GSE6033	strain : O157 : H7 NCTC 12900	Gtype
GSE6033	H7 EDL933 using SOAP2	Gtype
GSE6033	strain : MC4100 derivative	Gtype
GSE60546	strain : MC4100 derivative , dcd : : kan	Gtype
GSE60546	strain : MC4100 derivative , ndk : : cam	Gtype
GSE60546	strain : MC4100 derivative , recA730	Gtype
GSE60546	strain : MC4100 derivative , recA730 , dcd : : kan	Gtype
GSE60546	strain : MC4100 derivative , recA730 , ndk : : cam	Gtype
GSE60546	WT _ vs _ dcd	O
GSE60546	bacterial cells	Med
GSE60546	Demultiplexing 	O
GSE6060	LB ,	Med
GSE6060	37 °C	Temp
GSE6060	segemehl -LRB- via READemption -RRB-	Gtype
GSE6060	rip antibody : Monoclonal ANTI-FLAG ^ = AE M2	Gtype
GSE6060	RIP-Seq 	O
GSE6060	oligo -LRB- dT -RRB- barcoded adapter primer and the M-MVL reverse transcriptase	Gtype
GSE6060	strain : W3110	Gtype
GSE6061	content : wiggle	Gtype
GSE6061	equal volume of phenol : chloroform : isopropanol	Gtype
GSE6061	chloroform : isopropanol . The spike-in RNA -LRB- 5 ' P-CUCGUCCGACGUCACCUAGA , IBA -RRB-	Gtype
GSE6061	AT1 biological replicate	Gtype
GSE6061	LB media	Med
GSE6061	LB RPF	Med
GSE6061	LB RPF biological replicate	Med
GSE6100	RNA-Seq 	O
GSE6100	sample type : AT1 digested total RNA	Gtype
GSE6100	sample type : ribosome protected	Gtype
GSE6100	sample type : V1 digested total RNA	Gtype
GSE6100	strain : MC4100	Gtype
GSE6100	strain : MC4101	Gtype
GSE6100	strain : MC4102	Gtype
GSE6100	strain : MC4103	Gtype
GSE6100	strain : MC4104	Gtype
GSE6100	strain : MC4105	Gtype
GSE6100	strain : MC4106	Gtype
GSE6100	strain : MC4107	Gtype
GSE6100	tab separated	Gtype
GSE6100	GeneJET ™ RNA Purification Kit -LRB- Fermentas -RRB- and ribosomal RNA with two cycle of MICROBExpress ™ Bacterial mRNA Enrichment Kit -LRB- Ambion -RRB- . To probe the RNA structure two µg of enriched mRNA	Gtype
GSE6100	V1 biological replicate	Gtype
GSE6100	OD450 = 0.3	OD
GSE6100	delta hfq	Gtype
GSE6100	Delta hfq	Gtype
GSE6100	Delta rseA	Gtype
GSE6100	EC12n097 delta rseA	Gtype
GSE6100	EC12n098 delta rseA	Gtype
GSE6100	EC12n099 delta rseA	Gtype
GSE6100	EC18n018 hfq + rpoE overexpression 20 min	Gtype
GSE6100	EC18n019 hfq - rpoE overexpression 20 min	Gtype
GSE6100	EC18n035 delta rseA	Gtype
GSE6100	EC18n036 delta rseA	Gtype
GSE6100	EC18n037 delta hfq	Gtype
GSE6100	EC18n038 delta hfq	Gtype
GSE6100	EC18n039 delta hfq	Gtype
GSE6100	EC18n040 delta hfq	Gtype
GSE6100	EC18n136 hfq + rpoE overexpression 20 min	Gtype
GSE6100	Ec18n137 hfq - rpoE overexpression 20 min	Gtype
GSE6100	EC18n139 hfq + rpoE overexpression 20 min	Gtype
GSE6100	EC18n140 hfq - rpoE overexpression 20 min	Gtype
GSE6100	EC19n075 delta hfq	Gtype
GSE6100	EC19n076 delta hfq	Gtype
GSE6100	EC19n098 delta hfq	Gtype
GSE6100	EC19n099 delta hfq	Gtype
GSE6100	EC19n100 delta rseA	Gtype
GSE6100	EC19n101 delta rseA	Gtype
GSE6100	hfq + Wild type control -LRB- 20 min -RRB-	Gtype
GSE6100	M9 minimal complete media	Med
GSE6100	MG1655 rpoHp3 : : lacZ delta lacX74	Gtype
GSE6100	MG1655 rpoHp3 : : lacZ delta lacX74 hfq1 : : omega -LRB- Km ; BclI -RRB- -LRB- hfq - -RRB-	Gtype
GSE6100	MG1655 rpoHp3 : : lacZ delta lacX74 hfq2 : : omega -LRB- Km ; KpnI -RRB- -LRB- hfq + -RRB-	Gtype
GSE6100	MG1655 rpoHp3 : : lacZ delta lacX74 nadB : : Tn10 drseA	Gtype
GSE61092	Wild type control	Gtype
GSE61092	Wild type control -LRB- 20 min -RRB-	Gtype
GSE61092	E. coli CRP Monoclonal Antibody , Neoclone , #N0004	Gtype
GSE61092	ChIPExo-ArcA _ ArcA8myc _ glucose	Gtype
GSE61092	ChIPExo-ArcA _ ArcA8myc _ glucose	Gtype
GSE61092	ChIPExo-ArcA _ ArcA8myc _ glucose	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61604	ChIPExo-Crp _ wt	Gtype
GSE61736	ChIPExo-Fnr _ Fnr8myc _ glucose	Gtype
GSE61736	ChIPExo-Fnr _ Fnr8myc _ glucose	Gtype
GSE61736	ChIPExo-Fnr _ Fnr8myc _ glucose	Gtype
GSE61736	wt _ fructose _ NH4Cl _ O2 _ 1 _ anti-rpod	O
GSE61736	wt _ fructose _ NH4Cl _ O2 _ 2 _ anti-rpod	O
GSE61736	wt _ fructose _ NH4Cl _ O2 _ 3 _ anti-rpod	O
GSE61736	wt _ glucose _ NH4Cl _ O2 _ 1 _ anti-rpod	O
GSE61736	wt _ glucose _ NH4Cl _ O2 _ 2 _ anti-rpod	O
GSE61736	wt _ glucose _ NH4Cl _ O2 _ 3 _ anti-rpod	O
GSE61736	wt _ glycerol _ NH4Cl _ O2 _ 1 _ anti-rpod	O
GSE61736	wt _ glycerol _ NH4Cl _ O2 _ 2 _ anti-rpod	O
GSE61736	wt _ glycerol _ NH4Cl _ O2 _ 3 _ anti-rpod	O
GSE61736	ChIP-Seq 	O
GSE61736	Chromosomal DNA	Gtype
GSE61736	strain : ArcA8myc	Gtype
GSE61736	strain : Crp _ delAr1	Gtype
GSE61736	strain : Crp _ delAr1delAr2	Gtype
GSE61736	strain : Crp _ delAr2	Gtype
GSE61736	strain : delta Crp	Gtype
GSE61736	strain : Fnr8myc	Gtype
GSE61736	strain : wt	Gtype
GSE61736	RNA-Seq 	O
GSE61736	wt _ fructose _ NH4Cl _ O2 _ 1	O
GSE61736	wt _ fructose _ NH4Cl _ O2 _ 2	O
GSE61749	wt _ glucose _ NH4Cl _ O2 _ 1	O
GSE61749	wt _ glucose _ NH4Cl _ O2 _ 2	O
GSE61749	wt _ glucose _ NH4Cl _ O2 _ 3	O
GSE61749	wt _ glycerol _ NH4Cl _ O2 _ 1	O
GSE61749	wt _ glycerol _ NH4Cl _ O2 _ 2	O
GSE61749	strain : Crp _ delAr1	Gtype
GSE61749	strain : Crp _ delAr1delAr2	Gtype
GSE61749	strain : Crp _ delAr2	Gtype
GSE61749	strain : delta Crp	Gtype
GSE61749	strain : wt	Gtype
GSE61749	DNeasy -LRB- Qiagen -RRB-	Gtype
GSE61749	gDNA 520	Gtype
GSE61749	gDNA 521	Gtype
GSE61749	gDNA B02	Phase
GSE61749	gDNA B05	Phase
GSE61749	gDNA C01	Phase
GSE61749	gDNA C02	Phase
GSE61749	gDNA F01	Phase
GSE61749	gDNA F02	Phase
GSE61749	gDNA from E.coli K12 cyanine 3	Gtype
GSE61749	gDNA H01	Phase
GSE61749	gDNA H02	Phase
GSE61749	gDNA H03	Phase
GSE61749	gDNA H04	Phase
GSE61749	gDNA H05	Phase
GSE61749	gDNA H12	Phase
GSE61749	gDNA H23	Phase
GSE61749	gDNA H27	Phase
GSE61749	gDNA K12	Phase
GSE61749	gDNA S04	Phase
GSE61749	gDNA S05	Phase
GSE61749	gDNA S13	Phase
GSE61749	strain 520	Gtype
GSE61749	strain 521	Gtype
GSE61749	strain B02	Phase
GSE61749	strain B05	Phase
GSE61749	strain C01	Phase
GSE61749	strain C02	Phase
GSE61749	strain F01	Phase
GSE61749	strain F02	Phase
GSE61749	strain H01	Phase
GSE61749	strain H02	Phase
GSE61749	strain H03	Phase
GSE61749	strain H04	Phase
GSE61749	strain H05	Phase
GSE61749	strain H12	Phase
GSE61749	strain H23	Phase
GSE61749	strain H27	Phase
GSE61749	strain S04	Phase
GSE61749	strain S05	Phase
GSE61749	strain S13	Phase
GSE61749	Fis -- 120 min	Gtype
GSE61749	Fis -- 180 min	Gtype
GSE61749	Fis -- 420 min	Gtype
GSE61749	Fis -- 60 min	Gtype
GSE61749	GATC 	Gtype
GSE61749	Gene wise natural spline interpolation of temporal data	Gtype
GSE61749	genotype : delta-fis	Gtype
GSE6195	genotype : delta-hns	Gtype
GSE6195	genotype : wildtype	Gtype
GSE6195	Hns -180 min	Gtype
GSE6195	RNA extraction Kit	Gtype
GSE6195	RNA-Seq 	Gtype
GSE6195	strain : CSH50	Gtype
GSE6195	time : 120 minutes	Gtype
GSE6195	time : 180 minutes	Gtype
GSE6195	time : 300 minutes	Gtype
GSE6195	time : 420 minutes	Gtype
GSE6195	time : 60 minutes	Gtype
GSE62102	Wt -- 120 min	Gtype
GSE62102	Wt -- 180 min	Gtype
GSE62102	Wt -- 300 min	Gtype
GSE62102	Wt -- 420 min	Gtype
GSE62102	Wt -- 60 min	Gtype
GSE62102	4h after the induction of tynA expression	Gtype
GSE62102	wt 1h after the induction of tynA expression	Gtype
GSE62102	wt 4h after the induction of tynA expression	Gtype
GSE62394	genotype : wild type	Gtype
GSE62394	strain : K12	Gtype
GSE62394	wt at T0	O
GSE62394	wt at T1h	O
GSE62394	wt at T4h	O
GSE62394	acetate 	O
GSE62394	ChIP-Seq 	O
GSE62898	M9 minimal media	Gtype
GSE62898	0.2 % acetate	Supp
GSE62898	M9 minimal media	Gtype
GSE62898	0.2 % fructose	Supp
GSE62898	M9 minimal media	Gtype
GSE62898	0.2 % glucose	Supp
GSE62987	genotype 	Gversion
GSE62987	genotype : delta-cra Knock-out strain	Gtype
GSE62987	genotype : delta-crp Knock-out strain	Gtype
GSE62987	genotype : Wildtype	Gtype
GSE62987	RpoB ∆ cra 1	Gtype
GSE62987	RpoB ∆ cra 2	Gtype
GSE62987	RpoB ∆ crp 1	Gtype
GSE62987	RpoB ∆ crp 2	Gtype
GSE62987	K-12 MG1655	Gtype
GSE62987	Tab-delimited text files in gff format which has 8 columns : sequence id , source -LRB- empty -RRB- , feature -LRB- +	Gtype
GSE62987	carbon source : acetate	Gtype
GSE62987	carbon source : fructose	Gtype
GSE62987	carbon source : glucose	Gtype
GSE63817	genotype 	O
GSE63817	RNA-Seq 	O
GSE63817	K-12 MG1655	Gtype
GSE63817	comma-delimited text files include FPKM values	Gtype
GSE63817	WT acetate 2	Gtype
GSE63817	WT _ fructose	Gtype
GSE63817	WT fructose 1	Gtype
GSE63817	WT fructose 2	Gtype
GSE63817	WT _ glucose	Gtype
GSE63817	WT glucose	Gtype
GSE63817	WT glucose	Gtype
GSE63817	Δcra _ acetate	Gtype
GSE63817	Δcra acetate 1	Gtype
GSE63817	acetate 2	O
GSE63817	Δcra _ fructose	Gtype
GSE63817	Δcra fructose 1	Gtype
GSE63817	Δcra fructose 2	Gtype
GSE63817	Δcra _ glucose	Gtype
GSE63817	Δcra glucose	Gtype
GSE63817	Δcra glucose	Gtype
GSE6444	ChIP-Seq 	O
GSE6444	genotype 	Gversion
GSE6444	K-12 MG1655	Gtype
GSE6444	Tab-delimited text files in gff format which has 8 columns : sequence id , source -LRB- empty -RRB- , feature -LRB- +	Gtype
GSE6444	20 min	Supp
GSE6444	genotype 	O
GSE6444	RNA-Seq 	O
GSE6444	K-12 MG1655	Gtype
GSE6444	comma-delimited text files include FPKM values	Gtype
GSE6444	20 min	Supp
GSE6444	ΔoxyR PQ	Gtype
GSE6444	ΔsoxR PQ	Gtype
GSE64847	ΔsoxS PQ	Gtype
GSE64847	68908 	O
GSE64847	68909 	O
GSE64847	68910 	O
GSE64847	68911 	O
GSE64847	68912 	O
GSE64847	68913 	O
GSE64847	68915 	O
GSE64847	68916 	O
GSE64847	68917 	O
GSE64847	68919 	O
GSE64847	68920 	O
GSE64847	68921 	O
GSE64847	68922 	O
GSE64847	68923 	O
GSE64847	68924 	O
GSE64847	68925 	O
GSE64847	68926 	O
GSE64847	68927 	O
GSE64847	68928 	O
GSE64847	68929 	O
GSE64847	68930 	O
GSE64847	68931 	O
GSE64847	68932 	O
GSE64847	68933 	O
GSE64847	D1-ae10 	O
GSE64847	D1-ae11 	O
GSE64847	D1-ae12 	O
GSE64847	D1 + ae7	Supp
GSE64847	D1 + ae8	Supp
GSE64847	D1 + ae9	Supp
GSE64847	D1 + AN2	Supp
GSE64847	D1 + AN3	Supp
GSE64847	D1-AN4 	Supp
GSE64847	D1-AN5 	Supp
GSE64847	D1-AN6 	Supp
GSE64847	D3 + ae19	Supp
GSE64847	D3 + ae20	Supp
GSE64847	D3 + ae21	Supp
GSE64847	D3-ae22 	Supp
GSE64847	D3-ae23 	Supp
GSE64847	D3-ae24 	Supp
GSE64847	D3 + AN13	Supp
GSE64847	D3 + AN14	Supp
GSE64847	D3 + AN15	Supp
GSE64847	D3-AN16 	Supp
GSE64847	D3-AN17 	Supp
GSE64847	D3-AN18 	Supp
GSE64847	day : . strain : . oxygen : .	Gtype
GSE64847	Feature pixel median minus background pixel mean ;	Gtype
GSE64847	anti-RpoS -LRB- neoclone , WP009 -RRB-	Gtype
GSE64847	ChIP-exo GadW	Gtype
GSE64847	pH5 .5	pH
GSE64847	ChIP-exo GadW	Gtype
GSE64847	pH5 .5	pH
GSE64847	ChIP-exo GadX	Gtype
GSE64847	pH5 .5	pH
GSE64847	ChIP-exo GadX	Gtype
GSE64847	pH5 .5	pH
GSE64847	ChIP-exo RpoS	Gtype
GSE64847	pH5 .5	pH
GSE64847	ChIP-exo RpoS	Gtype
GSE64847	pH5 .5	pH
GSE64847	ChIP-Seq 	O
GSE64847	genotype : gadE-8myc	Gtype
GSE64847	genotype : gadW-8myc	Gtype
GSE64847	genotype : gadX-8myc	Gtype
GSE64847	K-12 MG1655	Gtype
GSE64847	Tab-delimited text files in gff format which has 8 columns : sequence id , source -LRB- empty -RRB- , feature -LRB- +	Gtype
GSE64847	genotype 	O
GSE64847	mid-log phase -LRB- OD600 = 0.3 -RRB-	Gtype
GSE64848	RNA-Seq 	O
GSE64848	K-12 MG1655	Gtype
GSE64848	comma-delimited text files include FPKM values	Gtype
GSE64848	pH5 .5	pH
GSE64848	pH5 .5	pH
GSE64848	WT pH5 .5 2	Gtype
GSE64848	pH5 .5	pH
GSE64848	pH5 .5	pH
GSE64848	pH5 .5	pH
GSE64848	pH5 .5	pH
GSE64848	pH5 .5	pH
GSE64848	pH5 .5	pH
GSE64848	pH5 .5	pH
GSE64848	pH5 .5	pH
GSE64848	pH5 .5	pH
GSE64848	growth phase : exponential growth phase	Gtype
GSE64848	growth phase : stationary growth phase	Gtype
GSE64848	growth phase : transition growth phase	Gtype
GSE64848	pControl _ exponential growth phase _ 1 ml cell pellet	Gtype
GSE64848	pControl _ stationary growth phase _ 1 ml cell pellet	Gtype
GSE64848	plasmid : pControl	Gtype
GSE64848	plasmid : pLPLσ	Gtype
GSE64848	pLPLσ _ exponential growth phase _ 1 ml cell pellet	Gtype
GSE64848	pLPLσ _ stationary growth phase _ 1 ml cell pellet	Gtype
GSE64848	timepoint 2 -LRB- 6h -RRB-	Gtype
GSE64848	timepoint 2 -LRB- 6h -RRB-	Gtype
GSE6486	strain : MG1655	Gtype
GSE6486	time point : 4.5 hrs after induction	Gtype
GSE6486	time point : 6 hrs after induction	Gtype
GSE6486	time point : 9 hrs after induction	Gtype
GSE6486	10-HT874-PS-60min1 	O
GSE6486	11-HT874-PS-60min2 	O
GSE6486	12-HT874-PS-60min3 	O
GSE6486	1-HT873-PA1 	O
GSE6486	2-HT873-PA2 	O
GSE6486	3-HT873-PA3 	O
GSE6486	4-HT873-PS-60min1 	O
GSE6486	5-HT873-PS-60min2 	O
GSE6486	6-HT873-PS-60min3 	O
GSE6486	7-HT874-PA1 	O
GSE6486	8-HT874-PA2 	O
GSE6486	9-HT874-PA3 	O
GSE6486	HT873-Con1 	O
GSE6486	HT873-Con2 	O
GSE6486	HT873-Con3 	O
GSE6486	HT873-PA1 	O
GSE6486	HT873-PA2 	O
GSE6486	HT873-PA3 	O
GSE6486	HT875-Con1 	O
GSE6486	HT875-Con2 	O
GSE6486	HT875-Con3 	O
GSE6486	HT875-PA1 	O
GSE6486	HT875-PA2 	O
GSE6486	HT875-PA3 	O
GSE6486	wild type	Gtype
GSE6486	strain : HT873	Gtype
GSE6486	strain : HT874	Gtype
GSE6486	strain : HT875	Gtype
GSE6486	treatment : Con1	Gtype
GSE6486	treatment : Con2	Gtype
GSE6486	treatment : Con3	Gtype
GSE6486	treatment : PA1	Gtype
GSE6486	treatment : PA2	Gtype
GSE6486	treatment : PA3	Gtype
GSE6486	treatment : PS-60min	Gtype
GSE6486	50 ng of the fragmented RNA	Gtype
GSE6486	cell type : Escherichia coli str	Gtype
GSE6486	RNA-Seq 	O
GSE6486	RNA-seq 37C	Technique
GSE6486	RNA-seq 37C	Technique
GSE6486	content : RPKM is generated by in-house script	Gtype
GSE6486	ChIP-Seq 	Gtype
GSE6486	deltamatP 22 °C	Gtype
GSE6486	genotype 	O
GSE6486	growth temperature : 22 °C	Gtype
GSE6486	37 °C	Temp
GSE65244	p 0.05 -- slocal = 1000 -- keep-dup = 20	Gtype
GSE65244	MatP 37 °C	Temp
GSE65244	MukB 22 °C	Gtype
GSE65244	MukB 37 °C	Temp
GSE65244	MukBDA 22 °C	Gtype
GSE65244	MukB deltamatP 22 °C	Gtype
GSE65244	MukBEQ 22 °C	Gtype
GSE65244	MukBEQ deltamatP 22 °C	Gtype
GSE65244	q -- no-mixed -- no-discordant -- no-unal	Gtype
GSE65244	content : MACS v2 .0.10.20131216 peaks file	Gtype
GSE65244	WT 22 °C	Gtype
GSE65244	WT 37 °C	Gtype
GSE65244	the full computational pipeline are available	Gtype
GSE65244	Glucose time course , 168 hour time point , biological replicate 1	Gtype
GSE65244	Glucose time course , 168 hour time point , biological replicate 2	Gtype
GSE65244	Glucose time course , 168 hour time point , biological replicate 3	Gtype
GSE65244	Glucose time course , 24 hour time point , biological replicate 1	Gtype
GSE65244	Glucose time course , 24 hour time point , biological replicate 2	Gtype
GSE65244	Glucose time course , 24 hour time point , biological replicate 3	Gtype
GSE65244	Glucose time course , 336 hour time point , biological replicate 1	Gtype
GSE65244	Glucose time course , 336 hour time point , biological replicate 2	Gtype
GSE65244	Glucose time course , 336 hour time point , biological replicate 3	Gtype
GSE65244	Glucose time course , 3 hour time point , biological replicate 1	Gtype
GSE65244	Glucose time course , 48 hour time point , biological replicate 1	Gtype
GSE65385	Glucose time course , 48 hour time point , biological replicate 2	Gtype
GSE65385	Glucose time course , 48 hour time point , biological replicate 3	Gtype
GSE65385	Glucose time course , 4 hour time point , biological replicate 1	Gtype
GSE65385	Glucose time course , 4 hour time point , biological replicate 2	Gtype
GSE65385	Glucose time course , 4 hour time point , biological replicate 3	Gtype
GSE65385	Glucose time course , 5 hour time point , biological replicate 1	Gtype
GSE65385	Glucose time course , 5 hour time point , biological replicate 2	Gtype
GSE65385	Glucose time course , 5 hour time point , biological replicate 3	Gtype
GSE65385	Glucose time course , 6 hour time point , biological replicate 1	Gtype
GSE65385	Glucose time course , 6 hour time point , biological replicate 2	Gtype
GSE65385	Glucose time course , 6 hour time point , biological replicate 3	Gtype
GSE65385	Glucose time course , 8 hour time point , biological replicate 1	Gtype
GSE65385	Glucose time course , 8 hour time point , biological replicate 2	Gtype
GSE65385	Glucose time course , 8 hourt ime point , biological replicate 3	Gtype
GSE65385	Bowtie2 2.1.0 with the -- k 1 option	Gtype
GSE65641	molecule subtype : rRNA-depleted total RNA	Gtype
GSE65641	molecule subtype : total RNA	Gtype
GSE65641	REL606 _ glucose-limited minimal medium _ 168 hr	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium _ 24 hr	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium _ 336 hr	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium _ 48 hr	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium _ 4 hr	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium _ 6 hr	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	REL606 _ glucose-limited minimal medium _ 8 hr	Gtype
GSE65641	REL606 _ glucose-limited minimal medium	Gtype
GSE65641	RNA-Seq 	O
GSE65641	RNAsnap 	O
GSE65641	RNA was fragmented using the NEBNext Magnesium RNA Fragmentation Module	Gtype
GSE65641	strain : REL606	Gtype
GSE65641	time point : 168 hours	Gtype
GSE65641	time point : 24 hours	Gtype
GSE65641	time point : 336 hours	Gtype
GSE65641	time point : 3 hours	Gtype
GSE65641	time point : 48 hours	Gtype
GSE65641	time point : 4 hours	Gtype
GSE65641	time point : 5 hours	Gtype
GSE65641	time point : 6 hours	Gtype
GSE65641	time point : 8 hours	Gtype
GSE65641	agno3 concentration in µm : 0	Gtype
GSE65641	agno3 concentration in µm : 5	Gtype
GSE65641	agno3 concentration in µm : 6.5	Gtype
GSE65641	agno3 concentration in µm : 8.5	Gtype
GSE65642	Ag0 .0 _ rep3	Gtype
GSE65642	Ag5 .0 _ rep3	Gtype
GSE65642	Growth : Anaerobic to early exponential growth	Gtype
GSE65642	20 mM trimethylamine-N-oxide	Supp
GSE65642	Media : Minimal salts + 20 mM trimethylamine-N-oxide +2.5 mM sodium nitrite	Gtype
GSE65642	pGIT1 	Gtype
GSE65642	pGIT1 .1	Gtype
GSE65642	pGIT1 .2	Gversion
GSE65642	pGIT1 .3	Phase
GSE65710	pGIT1 .4	Gtype
GSE65710	pGIT1 + NO2	Supp
GSE65710	pGIT8 	Supp
GSE65710	pGIT8 + NO2	Supp
GSE65710	Strain : MG1655 pGIT1 -LRB- carries the ytfE promoter in multicopy , titrates out NsrR to phenocopy an NsrR - mutation -RRB-	Gtype
GSE65710	Strain : MG1655 pGIT1 -LRB- carries the ytfE promoter in multicopy , titrates out NsrR to phenocopy an NsrR - mutation -RRB- Growth : Anaerobic to early exponential growth Media : Minimal	Gtype
GSE65710	20 mM trimethylamine-N-oxide	Supp
GSE65710	Strain : MG1655 pGIT1 -LRB- carries the ytfE promoter in multicopy , titrates out NsrR to phenocopy an NsrR - mutation -RRB- Growth : Anaerobic to early exponential growth Media : Minimal	Gtype
GSE65710	20 mM trimethylamine-N-oxide	Supp
GSE65710	Strain : MG1655 pGIT1 -LRB- carries the ytfE promoter in multicopy , titrates out NsrR to phenocopy an NsrR - mutation -RRB- Growth : Anaerobic to early exponential growth Media : Minimal salts + 20 mM trimethylamine-N-oxide +2.5 mM sodium nitrite	Gtype
GSE65710	Strain : MG1655 pGIT8 -LRB- carries 1 base pair deletion in the NsrR-binding site of the ytfE promoter -RRB-	Gtype
GSE65710	Strain : MG1655 pGIT8 -LRB- carries 1 base pair deletion in the NsrR-binding site of the ytfE promoter -RRB- Growth : Anaerobic to early exponential growth Media : Minimal	Gtype
GSE65710	20 mM trimethylamine-N-oxide + 2.5 mM sodium nitrite	Supp
GSE65710	Strain : MG1655 pGIT8 -LRB- carries 1 base pair deletion in the NsrR-binding site of the ytfE promoter -RRB- Growth : Anaerobic to early exponential growth Media : Minimal salts + 20 mM trimethylamine-N-oxide +2.5 mM sodium nitrite	Gtype
GSE65710	Strain : MG1655 pGIT8 -LRB- carries 1 base pair deletion in the NsrR-binding site of the ytfE promoter -RRB- Growth : Anaerobic to early exponential growth Media : Minimal	Gtype
GSE65710	20 mM trimethylamine-N-oxide + .5 mM sodium nitrite	Supp
GSE65710	Strain : MG1655 pGIT8 -LRB- carries 1 base pair deletion in the NsrR-binding site of the ytfE promoter -RRB- Growth : Anaerobic to early exponential growth Media : Minimal	Gtype
GSE65710	b2618 upregulation , 0.075 ug	Gtype
GSE65710	bcp upregulation , 0.075 ug	Gtype
GSE65711	30 _ r1	Gtype
GSE65711	30 _ r1	Gtype
GSE65711	30 _ r2	Gtype
GSE65711	30 _ r1	Gtype
GSE6609	cpxR upregulation , 0.075 ug	Gtype
GSE6609	crcB upregulation , 0.075 ug	Gtype
GSE6609	crp upregulation , 0.075 ug	Gtype
GSE6609	cspF upregulation , 0.075 ug	Gtype
GSE6609	dam upregulation , 0.075 ug	Gtype
GSE6609	dinI upregulation , amp 50ug	Gtype
GSE6609	dinP upregulation , amp 50ug	Gtype
GSE6609	dnaA upregulation , 0.075 ug	Gtype
GSE6609	dnaN upregulation , 0.075 ug	Gtype
GSE6609	dnaT upregulation , 0.075 ug	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli MG1063 -LRB- recA56 = recA	Gtype
GSE6609	E.coli W1863 wt lambda	Gtype
GSE6609	E.coli W1863 wt lambda	Gtype
GSE6609	E.coli W1863 wt lambda	Gtype
GSE6609	E.coli W1863 wt lambda	Gtype
GSE6609	E.coli W1863 wt lambda	Gtype
GSE6609	E.coli W1863 wt lambda	Gtype
GSE6609	E.coli W1863 wt lambda	Gtype
GSE6609	E.coli W1863 wt lambda	Gtype
GSE66441	emrR upregulation , 0.075 ug	Gtype
GSE66441	era upregulation , 0.075 ug	Gtype
GSE66441	fis upregulation , 0.075 ug	Gtype
GSE66441	fklB upregulation , 0.075 ug	Gtype
GSE66441	folA upregulation , 0.075 ug	Gtype
GSE66441	galF upregulation , 0.075 ug	Gtype
GSE66481	gcvR upregulation , 0.075 mg	Gtype
GSE66481	gyrA upregulation , 0.075 mg	Gtype
GSE66481	gyrI upregulation , 0.075 mg	Gtype
GSE66481	hlpA upregulation , 0.075 mg	Gtype
GSE66481	holD upregulation , 0.075 mg	Gtype
GSE66481	hscA upregulation , 0.075 mg	Gtype
GSE66481	IHF upregulation , 0.075 mg	Gtype
GSE67119	30 _ r1	Gtype
GSE67119	30 _ r1	Gtype
GSE67119	30 _ r2	Gtype
GSE67119	30 _ r1	Gtype
GSE67119	ldrA upregulation , 0.075 mg	Gtype
GSE67119	lexA upregulation , amp 50ug	Gtype
GSE67119	lon upregulation , amp 50ug	Gtype
GSE67119	luciferase 0.025 ug	Gtype
GSE67119	luciferase no drug	Gtype
GSE67119	luc upregulation , 0.000 ug	Gtype
GSE67119	luc upregulation , 0.075 ug	Gtype
GSE67119	luc upregulation , amp 50ug	Gtype
GSE67119	mazF _ chpA upregulation , amp 50ug	Gtype
GSE67218	mcrB upregulation , 0.075 mg	Gtype
GSE67218	mcrC upregulation , 0.075 mg	Gtype
GSE67218	menB upregulation , 0.075 mg	Gtype
GSE67221	menC upregulation , 0.075 mg	Gtype
GSE67221	minD upregulation , 0.075 mg	Gtype
GSE67221	minE upregulation , 0.075 mg	Gtype
GSE67221	murI upregulation , 0.075 mg	Gtype
GSE67221	nrdA upregulation , 0.075 mg	Gtype
GSE67221	nrdB upregulation , 0.075 mg	Gtype
GSE67221	nupC upregulation , 0.075 mg	Gtype
GSE67402	pyrC upregulation , 0.075 mg	Gtype
GSE67402	recA deletion 0.05 ug	Gtype
GSE67402	recA deletion 0 ug	Gtype
GSE67402	recA deletion 1.0 ug	Gtype
GSE67402	recA upregulation , amp 50ug	Gtype
GSE67402	relE upregulation , amp 50ug	Gtype
GSE67402	rimI upregulation , 0.075 mg	Gtype
GSE67402	RNAEasy with RNAProtect -LRB- Qiagen -RRB-	Gtype
GSE67402	rstB upregulation , 0.075 mg	Gtype
GSE67402	ruvA upregulation , amp 50ug	Gtype
GSE67402	ruvC upregulation , 0.075 mg	Gtype
GSE67402	sbcB upregulation , 0.075 mg	Gtype
GSE67402	sulA upregulation , amp 50ug	Gtype
GSE67402	umuD upregulation , amp 50ug	Gtype
GSE67735	uspA upregulation , 0.075 mg	Gtype
GSE67735	uvrA upregulation , amp 50ug	Gtype
GSE67735	wild-type 1.0 ug	Gtype
GSE67735	wild-type cells	Gtype
GSE67735	wild-type cells	Gtype
GSE67735	wild-type cells	Gtype
GSE67735	wild-type cells without norfloxacin	Gtype
GSE67735	WT _ D _ N1000 _ r1	Gtype
GSE67735	WT _ D _ N1000 _ r2	Gtype
GSE67735	WT _ N0000 _ r1	Gtype
GSE67735	WT _ N0000 _ r2	Gtype
GSE67735	WT _ N0025 _ r1	O
GSE67735	WT _ N0025 _ r2	O
GSE67735	WT _ N0050 _ r1	Gtype
GSE67735	WT _ N0050 _ r2	Gtype
GSE67735	WT _ N0075 _ r1	Gtype
GSE67735	WT _ N0075 _ r2	Gtype
GSE67735	yebF upregulation , 0.075 ug	Gtype
GSE6781	yoeB upregulation , 0.075 mg	Gtype
GSE6781	zipA upregulation , 0.075 ug	Gtype
GSE6781	BW25113 W	Phase
GSE6781	BW25113 ymgB LBglu 24h biofilm cells	Gtype
GSE6781	channel 1	Supp
GSE6781	BW25113 wild type after 24h of growth in LBglu with glass wool	Gtype
GSE6781	agent : control	Gtype
GSE6781	agent : glycolaldehyde	Gtype
GSE6781	genotype 	O
GSE6781	xylose as the only carbon source -LRB- 100 ml in 500 ml shake	Gtype
GSE6781	PEN205 	O
GSE6781	PEN205 strain first repetition	Gtype
GSE6781	PEN205 strain second repetition	Gtype
GSE6781	PEN205 strain third repetition	Gtype
GSE6781	strain : MG1655	Gtype
GSE6781	wild-type MG1655	Gtype
GSE6781	wild-type MG1655 + glycolaldehyde 10 mM	Gtype
GSE6781	WT strain treated with glycolaldehyde first repetition	Gtype
GSE6781	WT strain treated with glycolaldehyde second repetition	Gtype
GSE6781	WT strain treated with glycolaldehyde third repetition	Gtype
GSE6781	WT strain without glycolaldehyde first repetition	Gtype
GSE6781	WT strain without glycolaldehyde second repetition	Gtype
GSE6781	WT strain without glycolaldehyde third repetition	Gtype
GSE6836	Monoclonal ANTI-FLAG M5 -LRB- Sigma-Aldrich , catalog number : F4042 -RRB-	Gtype
GSE6836	ChIP-Seq 	Anti
GSE6836	bowtie -LRB- version 0.12.8 -RRB-	Gtype
GSE6836	in the IlluminaTruSeq DNA sample preparation kit and Phusion DNA polymerase -LRB- NEB -RRB- . Products of the ligation reaction and PCR amplification in the range 300-400 bp	Gtype
GSE6836	CFT073 -LRB- AE014075 .1 -RRB-	Gtype
GSE6836	NsrR _ ChIPSeq _ rep1	Gtype
GSE6836	NsrR _ ChIPSeq _ rep2	Gtype
GSE6836	NsrR _ ChIPSeq _ rep3	Gtype
GSE6836	NsrR _ input	Gtype
GSE6836	strain : CFT073 nsrR : : 3X-Flag tag	Gtype
GSE6836	content : bed format peak file generated from MACS2	Gtype
GSE6836	uropathogenic Escherichia coli -LRB- UPEC -RRB-	Gtype
GSE6836	CFT073 -LRB- AE014075 .1 -RRB-	Gtype
GSE6836	genotype : deltahmp deltanrfA deltanorVW	Gtype
GSE6836	RNA-Seq 	O
GSE6836	bowtie -LRB- version 0.12.8 -RRB-	Gtype
GSE6836	strain : CFT073	Gtype
GSE6836	tab-delimited text files include TPM values for each Sample ; column1 : transcript id ; column2 : TPM value	Gtype
GSE6836	uropathogenic Escherichia coli -LRB- UPEC -RRB- grown without nitrosative stress	Gtype
GSE6836	DnaK deletant _ 37C	Gtype
GSE6836	E.coli gene expression data in deletion of chaperone DnaK	Gtype
GSE6836	genotype 	O
GSE6836	strain background : BW25113	Gtype
GSE6836	The signal	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	M1655 wild type	Gtype
GSE6836	agitation speed : 1200 rpm	Gtype
GSE6836	agitation speed : 600 rpm	Gtype
GSE6836	bacterial cells	Med
GSE6836	fermentation time : 20h	Gtype
GSE6836	fermentation time : 30h	Gtype
GSE6836	fermentation time : 40h	Gtype
GSE6836	RNA-Seq 	O
GSE6836	SH0003 30h	Gtype
GSE6836	SH0012 20h	Gtype
GSE6836	SH0012 30h	Gtype
GSE6836	Sh0012 40h	Gtype
GSE6836	SH0012 no rpm change	Gtype
GSE6836	SH0012 no vitamin B12	Gtype
GSE6836	strain : SH0003	Gtype
GSE6836	strain : SH0012	Gtype
GSE6836	E. coli harboring pRadGro replicate 1	Gtype
GSE6836	Ec-pR VS Ec-1558 rep1	Gtype
GSE6836	Ec-pR VS Ec-1558 rep2	Gtype
GSE6836	Ec-pR VS Ec-1558 rep3	Gtype
GSE6836	Non-treatment 	O
GSE6836	strain information : E. coli harboring empty vector -LRB- pRADgro -RRB- , used as a control strain	Gtype
GSE6836	strain information : E. coli harboring pRADgro : : dr1558	Gtype
GSE6836	when the logarithmic gene expression ratios had a 2-fold difference in the expression level . The significance of the data	Gtype
GSE6836	0 ' in minimal medium +0.2 % glu , 25 ug total RNA	Gtype
GSE6836	0 ' in min med +0.2 % glu , 25ug total RNA	Gtype
GSE6836	0 ' minimal + 0.2 % glu , 25 ug total RNA	Gtype
GSE6836	0 ' minimal +02 % glu , 25 ug total RNA	Gtype
GSE6836	0 ' minimal medium + 0.2 % glu , 25 ug total	Gtype
GSE6836	NEB 's protocol from the NEBNext ® ChIP-Seq library preparation kit .	Gtype
GSE6836	anti-RecA antibody	Gtype
GSE6836	ChIP-Seq 	Gtype
GSE6836	DL4899 	O
GSE6836	DL4900 	O
GSE6836	DL5215 	O
GSE6836	DL5322 	O
GSE6836	DL5324 	O
GSE6836	DL5326 	O
GSE6836	DL5328 	O
GSE6836	DL5330 	O
GSE6836	Escherichia coli K12 MG1655 NC000913 .3	Gtype
GSE6836	Novoalign version 2.07 -LRB- www.novocraft.com -RRB- - Example : -LRB- novoalign - f DL4900	Gtype
GSE6836	lacIq lacZχ - cynX : : GmR lacZY : : χχχ mhpA : : χχχ rph +	Gtype
GSE6836	lacIq lacZχ - lacZ : : 246pal cynX : : GmR lacZY : : χ mhpA : : χχχ codBχ	Gtype
GSE6836	lacIq lacZχ - lacZ : : 246pal cynX : : GmR lacZY : : χχ mhpA : : χχχ codBχ	Gtype
GSE6836	lacIq lacZχ - lacZ : : 246pal cynX : : GmR lacZY : : χχχ mhpA : : χχχ codBχ	Gtype
GSE6836	lacIq lacZχ - lacZ : : 246pal cynX : : GmR lacZY : : χχχ mhpA : : χχχ rph +	Gtype
GSE6836	lacIq lacZχ - lacZ : : 246pal cynX : : GmR lacZY : : χχχχ mhpA : : χχχ codBχ	Gtype
GSE6836	lacIq lacZχ - lacZ : : 246pal cynX : : GmR lacZY : : χχχχχ mhpA : : χχχ codBχ	Gtype
GSE6836	lacIq lacZχ - lacZ : : 246pal cynX : : GmR lacZY : : χχχχχχ mhpA : : χχχ codBχ	Gtype
GSE6836	K-12 MG1655	Gtype
GSE6836	pyPileup.py -- file _ type = novo - f DL4900.novo -- tab = NC000913 .3 . tab -- chr = Wholechom.txt.gz -- ignorestrand	Gtype
GSE6836	15 ' 10 ug	Gtype
GSE6836	15 ' 15 ug	Gtype
GSE6836	15 ' +50 ug	Gtype
GSE6836	alignment : STAR 2.4.0 i	Gtype
GSE6836	batch culture	Phase
GSE6836	batch culture rep3 , 0.5 min	Gtype
GSE6836	batch culture rep3 , 0 min	Gtype
GSE6836	batch culture rep3 , 2 min	Gtype
GSE6836	batch culture rep3 , 5 min	Gtype
GSE6836	gene counting : HTSeq-Count 0.6.0	Gtype
GSE6836	replicate : 1	Gtype
GSE6836	replicate : 2	Gtype
GSE6836	replicate : 3	Gtype
GSE6836	RNA-Seq 	O
GSE6836	TruSeq ™ RNA Sample Preparation Kitv2 -LRB- Illumina -RRB-	Gtype
GSE6836	strain : K12 W3110	Gtype
GSE6836	content : The file format is . xlsx . The file contains the raw gene	Gtype
GSE6836	time : 0.5 min	Gtype
GSE6836	time : 0 min	Gtype
GSE6836	time : 10 min	Gtype
GSE6836	time : 1 min	Gtype
GSE6836	time : 2 min	Gtype
GSE6836	time : 5 min	Gtype
GSE6836	15 ' in minimal medium +0.2 % glu , 25 ug total RNA	Gtype
GSE6836	15 ' in min med +0.2 % glu +50 ug	Gtype
GSE6836	15 ' vs 0 ' in minimal medium +0.2 % glu	Gtype
GSE6836	agent : control	Gtype
GSE6836	agent : CORM-401	Gtype
GSE6836	Slide 46 _ Aerobic culture _ CORM-401 _ biol rep 2 _ Cy3 0 Cy5 10	Gtype
GSE6836	strain : Wild type strain MG1655	Gtype
GSE6836	time : 0 min	Gtype
GSE6836	time : 10 min	Gtype
GSE6836	20 min	Supp
GSE6836	time : 2.5 min	Gtype
GSE6836	time : 40 min	Gtype
GSE6836	time : 5 min	Gtype
GSE6836	time : 80 min	Gtype
GSE6836	K12 WT 3110	Gtype
GSE6836	MasterPure RNA purification Kit	Gtype
GSE6836	Overnight culture	Gtype
GSE6836	phoU gene mutant	Gtype
GSE6836	phoU gene mutant ; minimal medium	Gtype
GSE6836	wildtype strain ; minimal medium	Gtype
GSE6836	30 ' 10 ug	Gtype
GSE6836	30 ' 15 ug	Gtype
GSE6836	30 ' +50 ug	Gtype
GSE6836	30 ' in minimal medium +0.2 % glu , 25 ug total RNA	Gtype
GSE6836	30 ' in min med +0.2 % glu +50 ug	Gtype
GSE6836	30 ' vs 0 ' in minimal medium +0.2 % glu	Gtype
GSE6836	BL21 -LRB- DE3 -RRB- HPA 0mM	Gtype
GSE6836	BL21 -LRB- DE3 -RRB- HPA 3mM	Gtype
GSE6836	BL21 -LRB- DE3 -RRB- with 3 mM of heptanoic acid	Gtype
GSE6836	BL21 -LRB- DE3 -RRB- without heptanoic acid	Gtype
GSE6836	Escherichia coli BL21 -LRB- DE3 -RRB-	Gtype
GSE6836	K12 MG1655 with 10 mM of heptanoic acid	Gtype
GSE6836	K12 MG1655 without heptanoic acid	Gtype
GSE6836	metabolic response : BL21 -LRB- DE3 -RRB- is very susceptible to heptanoic acid , because several acid resistance systems stay inactive under this stress condition	Gtype
GSE6836	metabolic response : K12 MG1655 activates various acid resistance systems under heptanoic acid stress	Gtype
GSE6836	MG1655 HPA 0mM	Gtype
GSE6836	MG1655 HPA 10mM	Gtype
GSE6836	strain : BL21 -LRB- DE3 -RRB-	Gtype
GSE6836	strain : K12 MG1655	Gtype
GSE6836	stress : control	Gtype
GSE6836	stress : heptanoic acid	Gtype
GSE6836	TRIzol -LRB- Invitrogen -RRB-	Gtype
GSE6836	aspC KO rep1	Gtype
GSE6836	aspC KO rep2	Gtype
GSE6836	aspC KO rep3	Gtype
GSE6836	cysA KO rep1	Gtype
GSE6836	cysA KO rep2	Gtype
GSE6836	cysA KO rep3	Gtype
GSE6836	dcd KO LB rep1	Med
GSE6836	dcd KO LB rep2	Med
GSE6836	dcd KO M9 rep1	Gtype
GSE6836	dcd KO M9 rep2	Gtype
GSE6836	entF KO rep1	Gtype
GSE6836	entF KO rep2	Gtype
GSE6836	entF KO rep3	Gtype
GSE6836	fadr KO M9 rep1	Gtype
GSE6836	fadr KO M9 rep2	Gtype
GSE6836	fepA KO M9 rep1	Gtype
GSE6836	fepA KO M9 rep2	Gtype
GSE6836	fliY KO rep1	Gtype
GSE6836	fliY KO rep2	Gtype
GSE6836	fliY KO rep3	Gtype
GSE6836	gabT KO rep1	Gtype
GSE6836	gabT KO rep2	Gtype
GSE6836	gabT KO rep3	Gtype
GSE6836	galE KO rep1	Gtype
GSE6836	galE KO rep2	Gtype
GSE6836	galE KO rep3	Gtype
GSE6836	genotype 	O
GSE6836	kefB KO rep1	Gtype
GSE6836	kefB KO rep2	Gtype
GSE6836	kefB KO rep3	Gtype
GSE6836	khc KO rep1	Gtype
GSE6836	khc KO rep2	Gtype
GSE6836	khc KO rep3	Gtype
GSE6836	lacA KO M9 rep1	Gtype
GSE6836	lacA KO M9 rep2	Gtype
GSE6836	lplA KO rep1	Gtype
GSE6836	lplA KO rep2	Gtype
GSE6836	lplA KO rep3	Gtype
GSE6836	mgtA KO rep1	Gtype
GSE6836	mgtA KO rep2	Gtype
GSE6836	mgtA KO rep3	Gtype
GSE6836	mhpD KO rep1	Gtype
GSE6836	mhpD KO rep2	Gtype
GSE6836	mhpD KO rep3	Gtype
GSE6836	Parent LB rep1	Med
GSE6836	Parent LB rep2	Med
GSE6836	ppk KO LB rep1	Med
GSE6836	ppk KO LB rep2	Med
GSE6836	ppk KO M9 rep1	Gtype
GSE6836	ppk KO M9 rep2	Gtype
GSE6836	putP KO rep1	Gtype
GSE6836	putP KO rep2	Gtype
GSE6836	putP KO rep3	Gtype
GSE6836	rfbA KO rep1	Gtype
GSE6836	rfbA KO rep2	Gtype
GSE6836	rfbA KO rep3	Gtype
GSE6836	RNA-Seq 	Gtype
GSE6836	sdhC KO rep1	Gtype
GSE6836	sdhC KO rep2	Gtype
GSE6836	sdhC KO rep3	Gtype
GSE6836	strain 	Gtype
GSE6836	content : htcount : expression count	Gtype
GSE6836	treatment : 0.3 % glucose	Gtype
GSE6836	treatment : 0.4 % glucose	Gtype
GSE6836	trpD KO rep1	Gtype
GSE6836	trpD KO rep2	Gtype
GSE6836	trpD KO rep3	Gtype
GSE6836	ugpC KO rep1	Gtype
GSE6836	ugpC KO rep2	Gtype
GSE6836	ugpC KO rep3	Gtype
GSE69829	WT rep1	Gtype
GSE69829	WT rep2	Gtype
GSE69829	WT rep3	Gtype
GSE69829	wzc KO M9 rep1	Gtype
GSE69829	wzc KO M9 rep2	Gtype
GSE69829	yghD KO M9 rep1	Gtype
GSE69829	yghD KO M9 rep2	Gtype
GSE69829	5-azacytidine-treated 	Gtype
GSE69829	early stationary phase 1	Gtype
GSE69830	early stationary phase 2	Gtype
GSE69830	early stationary phase 3	Gtype
GSE69830	early stationary phase 4	Gtype
GSE69830	early stationary phase 5	Gtype
GSE69830	250 RPM	Agit
GSE69830	log phase 1	Gtype
GSE69830	log phase 2	Phase
GSE69830	log phase 3	Gtype
GSE69830	log phase 4	Phase
GSE69830	log phase 5	Gtype
GSE69830	phase : early stationary phase	Gtype
GSE69830	phase : log phase	Gtype
GSE69830	strain : BW25113	Gtype
GSE69830	untreated 	O
GSE69912	Escherichia coli MG1655 fis : : kan grown 150 minutes	Gtype
GSE69912	Escherichia coli MG1655 fis : : kan grown 240 minutes	Gtype
GSE69912	Escherichia coli MG1655 fis : : kan grown 360 minutes	Gtype
GSE6992	Escherichia coli MG1655 fis : : kan grown 90 minutes	Gtype
GSE6992	MasterPure RNA purification Kit per manufacturers protocol	Gtype
GSE6992	not all of the probes on the new platform were present on the old platform	Gtype
GSE6992	Escherichia coli MG1655 wt grown 150 minutes	Gtype
GSE6992	Escherichia coli MG1655 wt grown 240 minutes	Gtype
GSE6992	Escherichia coli MG1655 wt grown 360 minutes	Gtype
GSE6992	Escherichia coli MG1655 wt grown 90 minutes	Gtype
GSE6992	MasterPure RNA purification Kit per manufacturers protocol	Gtype
GSE70507	not all of the probes on the new platform were present on the old platform	Gtype
GSE70507	wildtype Escherichia coli	Gtype
GSE70507	wt 150 minutes growth rep3	Gtype
GSE70507	wt 240 minutes growth rep1	O
GSE70507	wt 240 minutes growth rep2	O
GSE70507	wt 240 minutes growth rep3	Gtype
GSE70507	wt 360 minutes growth rep1	O
GSE70507	wt 360 minutes growth rep2	O
GSE70507	wt 360 minutes growth rep3	Gtype
GSE70507	wt 90 minutes growth rep1	O
GSE70507	wt 90 minutes growth rep2	O
GSE70507	wt 90 minutes growth rep3	Gtype
GSE70507	Enterohemorrhagic Escherichia coli O157 : H7 strain EDL933	Gtype
GSE70507	Escherichia coli O157 : H7 str . EDL933	Gtype
GSE70507	genotype : -LCB- delta -RCB- hns	Gtype
GSE70507	genotype : wild type	Gtype
GSE70507	phase : logarithmic phase	Gtype
GSE70507	621-628 -RRB-	Gtype
GSE70688	RNA-Seq 	O
GSE70688	content : RPKM	Gtype
GSE70688	136-138 -RRB-	Gtype
GSE70688	wt _ 1	Gtype
GSE70688	wt _ 2	O
GSE70688	Bacterial cells	Med
GSE70688	genotype : del rpoS	Gtype
GSE70688	genotype : del rsd	Gtype
GSE70688	genotype : del rsd ; del ssrS	Gtype
GSE70688	genotype : del ssrS	Gtype
GSE70688	genotype : Wild-type	Gtype
GSE70688	growth phase : Early Exponential	Gtype
GSE70688	growth phase : Late Stationary	Gtype
GSE70688	growth phase : Mid-Exponential	Gtype
GSE7	growth phase : Stationary	Gtype
GSE7	growth phase : Transition to Stationary	Gtype
GSE71249	RNA-Seq 	O
GSE71562	Tab-delimited text file ; genes	Gtype
GSE71562	wt _ EE _ 1	Gtype
GSE71562	wt _ EE _ 2	O
GSE71562	wt _ LS _ 1	Gtype
GSE71562	wt _ LS _ 2	O
GSE71562	wt _ ME _ 1	O
GSE71562	wt _ ME _ 2	O
GSE71562	wt _ S _ 1	O
GSE71562	wt _ S _ 2	O
GSE71562	wt _ TS _ 1	Gtype
GSE71562	wt _ TS _ 2	O
GSE71562	Monoclonal anti-FLAG antibody , Murine IgG	Gtype
GSE71562	1.1 % -LSB- wt	Gtype
GSE71562	OTHER 	Technique
GSE71562	Genetrack -LRB- u = 0 , d = 80 , b = 2 , m = mode -RRB-	Gtype
GSE71562	strain : MG1655	Gtype
GSE71562	content : chromosome chromosomeStartPosition chromosomeStopPosition readCoverage -LRB- positive values	Gtype
GSE71562	UvrY -LRB- Response regulator of the BarA	Gtype
GSE71562	Bacterial cells	Med
GSE7	RpoS -LRB- Neoclone cat	Gtype
GSE7	ChIP-Seq 	O
GSE71784	genotype : MG1655 del ssrS	Gtype
GSE71784	genotype : MG1655 wild-type	Gtype
GSE71784	wt _ 1 _ input	O
GSE71784	wt _ 1 _ IP	O
GSE71784	wt _ 2 _ input	Gtype
GSE71784	wt _ 2 _ IP	O
GSE71784	culture condition : Aerobic cultures	Gtype
GSE71784	culture condition : Anaerobic cultures	Gtype
GSE71784	∆ fur Aerobic A	Gtype
GSE71784	∆ fur Aerobic B	Gtype
GSE71784	∆ fur Anaerobic A	Gtype
GSE71784	∆ fur Anaerobic B	Gtype
GSE71784	∆ fur ∆ ryhB Aerobic A	Gtype
GSE71784	∆ fur ∆ ryhB Aerobic B	Gtype
GSE71784	∆ fur ∆ ryhB Anaerobic A	Gtype
GSE71784	∆ fur ∆ ryhB Anaerobic B	Gtype
GSE71784	genotype 	Gtype
GSE71784	∆ ryhB Aerobic	Gtype
GSE71784	∆ ryhB	Gtype
GSE71784	RyhB-minus_cDNA_Aerobic_WIG.txt 	Air
GSE71784	RyhB-minus_cDNA_Anaerobic_WIG.txt 	Air
GSE71784	Wild-type Aerobic A	Gtype
GSE71784	Wild-type Aerobic B	Gtype
GSE71784	Wild-type Anaerobic A	Gtype
GSE71784	Wild-type Anaerobic B	Gtype
GSE71784	Wild-type _ cDNA _ Aerobic	Gtype
GSE71784	Wild-type _ cDNA	Gtype
GSE71784	10 µM FeSO4	Supp
GSE71784	∆ fur Anaerobic -LSB- IP vs nput -RSB-	Gtype
GSE71784	genotype 	Gtype
GSE71784	Input ∆ fur	Gtype
GSE71784	ip antibody : affinity purified anti-Fur antibody	Anti
GSE71784	IP ∆ fur	Gtype
GSE71784	the statistical program R . The sample data table contains the log2 ratio of the IP	Gtype
GSE71784	sample type : input control	Gtype
GSE71784	Sodium phosphate -LRB- 1	Gtype
GSE71784	Anaerobic cultures	Air
GSE71784	, Iron Deficient cultures	Med
GSE71784	Custom anti-Fur polyclonal antibody	Gtype
GSE7243	ChIP-Seq 	Anti
GSE7243	Deconvolute peaks in close proximity , dPeak	Gtype
GSE7	U00096 .2	Gversion
GSE7	genotype 	Gversion
GSE7	Combined input	Gtype
GSE7	growth medium : MOPS minimal glucose media	Med
GSE7	10 µM FeSO4	Supp
GSE7	growth medium : MOPS minimal glucose media	Med
GSE7	Input ChIP-Seq	Gversion
GSE73640	peak shape by visual inspection	Gtype
GSE73640	Sodium phosphate -LRB- 1	Gtype
GSE73640	5 ' 10 ug	Gtype
GSE73640	5 ' 15 ug	Gtype
GSE73640	5 ' +50 ug	Gtype
GSE73640	antiFlag M2	Gtype
GSE73640	ChIP-Seq 	Anti
GSE73640	: flag	Gtype
GSE73640	E. coli MG1655 parE : : flag	Gtype
GSE73672	Minimal Medium	Gtype
GSE73672	Input ParE-flag S20min	Gtype
GSE73672	Input ParE-flag S40min	Gtype
GSE73672	NorflIP Input ParC-flag 1	Gtype
GSE73672	NorflIP Input ParC-flag 2	Gtype
GSE73672	NorflIP Input ParE-flag 1	Gtype
GSE73672	content : Enrichement -LRB- IP	Gtype
GSE73672	bla _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	15 min	Supp
GSE73672	bla _ 1 min	Supp
GSE73672	bla _ 2 min	Supp
GSE73672	6 min	Supp
GSE73672	8 min	Supp
GSE73672	target the signal-peptide-coding	Gtype
GSE73672	genotype 	O
GSE73672	lacZ _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	lacZ _ 15 min	Gtype
GSE73672	lacZ _ 1 min	Supp
GSE73672	lacZ _ 2 min	Supp
GSE73672	lacZ _ 6 min	Gtype
GSE73672	lacZ _ 8 min	Gtype
GSE73672	mg1655 	Gtype
GSE73672	mMaple3 _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	15 min	Supp
GSE73672	mMaple3 _ 1 min	Supp
GSE73672	mMaple3 _ 2 min	Supp
GSE73672	6 min	Supp
GSE73672	8 min	Supp
GSE73672	MutRep1 _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	15 min	Supp
GSE73672	20 min	Supp
GSE73672	MutRep1 _ 2 min	Supp
GSE73672	6 min	Supp
GSE73672	8 min	Supp
GSE73672	MutRep2 _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	15 min	Supp
GSE73672	20 min	Supp
GSE73672	MutRep2 _ 2 min	Supp
GSE73672	6 min	Supp
GSE73672	8 min	Supp
GSE73672	neo _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	15 min	Supp
GSE73672	neo _ 1 min	Supp
GSE73672	neo _ 2 min	Supp
GSE73672	neo _ 4 min	Gtype
GSE73672	neo _ 6 min	Gtype
GSE73672	neo _ 8 min	Gtype
GSE73672	phoA _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	15 min	Supp
GSE73672	phoA _ 1 min	Supp
GSE73672	phoA _ 2 min	Supp
GSE73672	6 min	Supp
GSE73672	8 min	Supp
GSE73672	RNA-Seq 	Supp
GSE73672	time point : 0 min	Gtype
GSE73672	time point : 10 min	Gtype
GSE73672	time point : 15 min	Gtype
GSE73672	time point : 1 min	Gtype
GSE73672	time point : 20 min	Gtype
GSE73672	time point : 2 min	Gtype
GSE73672	time point : 4 min	Gtype
GSE73672	time point : 6 min	Gtype
GSE73672	time point : 8 min	Gtype
GSE73672	WTKasRep1 _ 0 min	Gtype
GSE73672	15 min	Supp
GSE73672	20 min	Supp
GSE73672	WTKasRep1 _ 2 min	Supp
GSE73672	6 min	Supp
GSE73672	8 min	Supp
GSE73672	WTKasRep2 _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	15 min	Supp
GSE73672	20 min	Supp
GSE73672	WTKasRep2 _ 2 min	Supp
GSE73672	6 min	Supp
GSE73672	8 min	Supp
GSE73672	WTRep1 _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	15 min	Supp
GSE73672	20 min	Supp
GSE73672	WTRep1 _ 2 min	Supp
GSE73672	6 min	Supp
GSE73672	8 min	Supp
GSE73672	WTRep2 _ 0 min	Gtype
GSE73672	10 min	Supp
GSE73672	15 min	Supp
GSE73672	20 min	Supp
GSE73672	WTRep2 _ 2 min	Supp
GSE73672	6 min	Supp
GSE73672	8 min	Supp
GSE73672	cDNA of EPEC strain	Gtype
GSE73707	strain : EPEC	Gtype
GSE73707	time point : 0	Gtype
GSE73707	time point : 135 min	Gtype
GSE73707	time point : 180 min	Gtype
GSE73707	time point : 45 min	Gtype
GSE73707	time point : 90 min	Gtype
GSE73707	treatment : 2ug	Gtype
GSE73707	treatment : 4ug	Gtype
GSE73707	treatment : saline	Gtype
GSE7379	5 ' in minimal medium +0.2 % glu , 25 ug total RNA	Gtype
GSE7379	5 ' in min med +0.2 % glu +50 ug	Gtype
GSE7379	5 ' vs 0 ' in minimal medium +0.2 % glu	Gtype
GSE7379	60 ' 10 ug	Gtype
GSE7379	60 ' 15 ug	Gtype
GSE7379	60 ' + 50 ug	Supp
GSE7379	60 ' 50 ug	Gtype
GSE7379	60 ' +50 ug	Gtype
GSE7379	60 ' in min +.2 % glu , 25 ug RNA	Gtype
GSE7379	60 ' in minimal medium +0.2 % glu , 25 ug total RNA	Gtype
GSE7379	60 ' in min med +0.2 % glu +50 ug	Gtype
GSE7379	60 ' vs 0 ' in minimal medium +0.2 % glu	Gtype
GSE7379	60 ' vs 0 ' in minimal medium +0.2 % glu , II	Gtype
GSE7379	control condition	Gtype
GSE7379	nickel condition	Gtype
GSE7379	W3110 -LRB- NC _ 007779 -RRB-	Gtype
GSE7379	genotype : wild type	Gtype
GSE7379	growth phase : log phase	Gtype
GSE7379	RNA-Seq 	Technique
GSE7380	strain : W3110	Gtype
GSE7380	excess metal via the RcnAB efflux system	Gtype
GSE7380	DicF rep1	Phase
GSE7380	DicF rep2	Phase
GSE7380	DicF rep3	Phase
GSE7380	0.5 mM isopropyl-β-d-thiogalactopyranoside -LRB- IPTG -RRB- to induce expression of the empty vector or the small RNA .	Gtype
GSE7380	K-12 subst . MG1655 genome -LRB- NC _ 000913.3 -RRB-	Gtype
GSE7380	genotype : delta dicF , lacIq	Gtype
GSE7380	protocol : small RNA DicF	Gtype
GSE7380	protocol : vector control	Gtype
GSE7380	RNA-Seq 	O
GSE7380	Processed-VectorvsDicF-transcripts . txt : . txt raw output file from Rockhopper	Gtype
GSE7380	K-12 subst . MG1655 genome -LRB- NC _ 000913.3 -RRB-	Gtype
GSE7380	Total RNA from bacterial culture	Gtype
GSE7380	Vector rep3	Gtype
GSE7380	Bacterial cell pellet	Gtype
GSE7380	the 75th percentile shift	Gtype
GSE73969	plasmid : G181D NusA	Gtype
GSE73969	plasmid : R258C NusA	Gtype
GSE73969	plasmid : wild type NusA	Gtype
GSE73969	strain : MG1655	Gtype
GSE73969	Bacterial cell pellet	Gtype
GSE73969	the 75th percentile shift	Gtype
GSE73969	MG1655 WT NusA BR2 , control	Gtype
GSE74809	plasmid : G181D NusA	Gtype
GSE74809	plasmid : R258C NuSA	Gtype
GSE74809	plasmid : wild type NusA	Gtype
GSE74809	strain : MG1655	Gtype
GSE74809	Bacterial cell pellet	Gtype
GSE74809	strain : MG1655	Gtype
GSE74809	treatment : vector control	Gtype
GSE74809	WT Rho plasmid	Gtype
GSE74809	Bacterial cell pellet	Gtype
GSE74809	E. coli MG1655 ∆ Rac G324D , treated-Replicate1-mutant	Gtype
GSE74809	E. coli MG1655 ∆ Rac G324D , treated-Replicate2-mutant	Gtype
GSE74809	E. coli MG1655 ∆ Rac N340S , treated-Replicate1-mutant	Gtype
GSE74809	E. coli MG1655 ∆ Rac N340S , treated-Replicate2-mutant	Gtype
GSE74809	E. coli MG1655 ∆ Rac WT , control-Replicate1-Wildtype	Gtype
GSE74809	E. coli MG1655 ∆ Rac WT , control-Replicate2-Wildtype	Gtype
GSE74809	genotype : delta-rac	Gtype
GSE74809	plasmid : G324D Rho mutant	Gtype
GSE74809	plasmid : N340S Rho mutant	Gtype
GSE74809	plasmid : WT Rho	Gtype
GSE74809	strain : MG1655	Gtype
GSE74809	Rho -LRB- WT	Gtype
GSE74809	NEB 's protocol from the NEBNext ® ChIP-Seq library preparation kit .	Gtype
GSE74809	Bacterial Cell Lysates	Gtype
GSE74809	ChIP-Seq 	O
GSE74809	Escherichia coli K12 MG1655 NC000913 .3	Gtype
GSE74809	genotype : delta _ recG263 : : KanR lacZ : : χχχ mhpR : : χχχ proA : : ISceIcs tsx : : ISceIcs PBAD-sbcDC lacZ + cynX : : GmR lacIq lacZχ	Gtype
GSE74809	genotype : delta _ recG263 : : KanR lacZ : : χχχ mhpR : : χχχ proA : : ISceIcs tsx : : ISceIcs PBAD-sbcDC lacZ : : pal246 cynX : : GmR lacIq lacZχ	Gtype
GSE74809	genotype : lacZ : : χχχ mhpR : : χχχ proA : : ISceIcs tsx : : ISceIcs PBAD-sbcDC lacZ + cynX : : GmR lacIq lacZχ	Gtype
GSE74809	genotype : lacZ : : χχχ mhpR : : χχχ proA : : ISceIcs tsx : : ISceIcs PBAD-sbcDC lacZ : : pal246 cynX : : GmR lacIq lacZχ	Gtype
GSE74809	Novoalign version 2.07 -LRB- www.novocraft.com -RRB- - Example : -LRB- novoalign - f DL4900	Gtype
GSE74809	K-12 MG1655	Gtype
GSE74809	pyPileup.py -- file _ type = novo - f DL4184.novo -- tab = NC000913 .3 . tab -- chr = Wholechom.txt -- ignorestrand	Gtype
GSE74809	temperature controlled water bath . Before continuous cultivation -LRB- dilution rate = 0.25 -RRB- , 1 -- 2 ml of the ONC	Gtype
GSE74809	011741 -LRB- E.coli strain IAI1 -RRB- , NC _ 000913.2 -LRB- E.coli strain MG1655 -RRB- , TW09308 -LRB- E.coli strain TW09308 -RRB- , and TW11588 -LRB- E.coli strain TW11588 -RRB-	Gtype
GSE74809	growth protocol : Bacteria liquid culture	Gtype
GSE74809	IAI1 batch	Phase
GSE74809	IAI1 chemostat	Phase
GSE74809	IAI1 starvation	Phase
GSE74810	n 2-e 70-l 28 -- best -RRB-	Gtype
GSE74810	MG1655 batch	Phase
GSE74810	MG1655 chemostat	Phase
GSE74810	MG1655 starvation	Phase
GSE74810	Remove non-protein coding counts	Gtype
GSE74810	RNA-Seq 	O
GSE74810	strain : IAI1	Gtype
GSE74810	strain : K12 -LRB- MG1655 -RRB-	Gtype
GSE74810	strain : TW09308	Gtype
GSE74810	strain : TW11588	Gtype
GSE74836	Summarize the read count to each annotated gene	Gtype
GSE74836	content : All in tab-delimited ASCII format . raw_count.txt -LRB- pre-normalized read count -RRB- , normalized_count.txt , panGeneMap.txt -LRB- geneID map between the strains and pangene ID -RRB- , Gene_annotations.txt -LRB- annotation of genes -RRB-	Gtype
GSE74836	treatment : batch growth	Gtype
GSE74836	treatment : chemostat growth	Gtype
GSE74836	treatment : starvation growth	Gtype
GSE74836	TW09308 batch	Phase
GSE74836	TW09308 chemostat	Phase
GSE74836	TW09308 starvation	Phase
GSE74836	TW11588 batch	Phase
GSE74836	TW11588 chemostat	Phase
GSE74836	TW11588 starvation	Phase
GSE74836	bacteria 	O
GSE74836	DMS-seq , the position of each alignment was the position immediately 5 ' of the 5 ' end of the read .	Gtype
GSE74930	NC000913 .2	Gtype
GSE74930	mRNA-seq 37 °C in WT with control plasmid	Gtype
GSE74930	mRNA-seq 37 °C	Temp
GSE74930	mRNA-seq 37 °C	Temp
GSE74930	RNA-Seq 	O
GSE74930	strain : MG1655 -LSB- p-CTRL -RSB-	Gtype
GSE74930	strain : MG1655 -LSB- p-CUA -RSB-	Gtype
GSE74930	strain : MG1655 -LSB- p-CUG -RSB-	Gtype
GSE74930	the primer 5Phos	Gtype
GSE74930	treatment : 1mM IPTG	Gtype
GSE74930	pre-chilled stop solution -LRB- 5 % phenol	Gtype
GSE74930	tobacco acid pyrophosphatase -LRB- TAP -RRB- to allow for the ligation of the 5 ' end RNA adapter	Gtype
GSE74930	Escherichia coli O104 : H4	Gtype
GSE74930	FastX FastX -LRB- version 0.0.13 -RRB-	Gtype
GSE74930	origin of isolation : patient with hemolytic uremic syndrome -LRB- HUS -RRB-	Gtype
GSE74930	RNA-Seq 	O
GSE74930	strain : clinical isolate LB226692	Gtype
GSE74931	ice-cold STOP solution -LRB- 95 % ethanol , 5 % phenol -LRB- pH 4.7 -RRB- -RRB-	Gtype
GSE74931	analyzed in the statistical software program R -LRB- www.r-project.org -RRB- using the EdgeR package	Gtype
GSE74931	RNA-Seq 	O
GSE74931	strain : Crooks	Gtype
GSE74932	tab-delimited text files include gene expresion values	Gtype
GSE74932	carbon source : glycerol	Gtype
GSE74932	carbon source : glycerol + propionate	Gtype
GSE74932	delta-rnr mutant _ anoxic -LRB- NO3 -RRB- _ glycerol	Gtype
GSE74932	delta-rnr mutant _ anoxic -LRB- NO3 -RRB-	Gtype
GSE74932	delta-rnr mutant _ oxic _ glycerol	Gtype
GSE74932	delta-rnr mutant _ oxic _ glycerol + propionate	Gtype
GSE74932	d _ rnr NO3 w	Gtype
GSE74932	d _ rnr O2 w	Gtype
GSE74932	genotype 	Substrain
GSE74932	molecule subtype : total RNA -LRB- ribosome-depleted -RRB-	Gtype
GSE74932	oxic 	O
GSE74932	RNA-Seq 	O
GSE74932	modification of the 2nd strand cDNA synthesis	Gtype
GSE74932	wild type _ anoxic -LRB- NO3 -RRB- _ glycerol	Gtype
GSE74932	wild type	Gtype
GSE74932	wild type _ oxic _ glycerol	Gtype
GSE74932	wild type	Gtype
GSE74932	WT NO3 1	Gtype
GSE74932	WT NO3 2	Gtype
GSE74932	WT NO3 w	Gtype
GSE74932	WT O2 1	Gtype
GSE74932	WT O2 2	Gtype
GSE7	WT O2 w	Gtype
GSE75641	genotype 	O
GSE75641	Mutant B8 _ 0.8 % Bu	Gtype
GSE75641	Mutant B8 _ 0.8 % Bu	Gtype
GSE75641	Mutant B8 _ 0.8 % Bu _ 1.5 h _ rep3	Gtype
GSE75641	Mutant B8 , 0.8 % butanol ,1.5 h , replicate 1	Gtype
GSE75641	Mutant B8 , 0.8 % butanol ,1.5 h , replicate 2	Gtype
GSE75641	Mutant B8 , 0.8 % butanol ,1.5 h , replicate 3	Gtype
GSE75641	n-Butanol -LRB- 0.8 % , v	Gtype
GSE75641	phenotype : 0.6 % n-butanol tolerance	Gtype
GSE75641	phenotype : 2 % n-butanol tolerance	Gtype
GSE75641	strain : JM109	Gtype
GSE75641	Enteroheamorragic E. coli	Gtype
GSE75641	Genomic DNA from O111 strain 10828	Gtype
GSE75641	Genomic DNA from O111 strain 11109	Gtype
GSE75641	Genomic DNA from O111 strain 11117	Gtype
GSE75641	Genomic DNA from O111 strain 11128	Gtype
GSE75641	Genomic DNA from O111 strain 11619	Gtype
GSE75641	Genomic DNA from O111 strain 11711	Gtype
GSE75641	Genomic DNA from O111 strain 11788	Gtype
GSE75641	Genomic DNA from O111 strain 11845	Gtype
GSE75641	Genomic DNA from O111 strain 12009	Gtype
GSE75641	Genomic DNA from O111 strain 13369	Gtype
GSE75641	Genomic DNA from O111 strain ED71	Gtype
GSE75641	Genomic DNA from O111 strain PMK5	Gtype
GSE75641	Genomic DNA from O157 strain 980551	Gtype
GSE75641	Genomic DNA from O157 strain 980706	Gtype
GSE75641	Genomic DNA from O157 strain 980938	Gtype
GSE75641	Genomic DNA from O157 strain 981456	Gtype
GSE75818	Genomic DNA from O157 strain 981795	Gtype
GSE75818	Genomic DNA from O157 strain 982243	Gtype
GSE75818	Genomic DNA from O157 strain 990281	Gtype
GSE75818	Genomic DNA from O157 strain 990570	Gtype
GSE75818	Genomic DNA from O26 strain 11044	Gtype
GSE75818	Genomic DNA from O26 strain 11368	Gtype
GSE75818	Genomic DNA from O26 strain 11656	Gtype
GSE75818	Genomic DNA from O26 strain 12719	Gtype
GSE75818	Genomic DNA from O26 strain 12929	Gtype
GSE75818	Genomic DNA from O26 strain 13065	Gtype
GSE75818	Genomic DNA from O26 strain 13247	Gtype
GSE75818	Genomic DNA from O26 strain ED411	Gtype
GSE75818	O103 no. 1 -LRB- strain 10828 -RRB- replicate 1	Gtype
GSE75818	O103 no. 1 -LRB- strain 10828 -RRB- replicate 2	Gtype
GSE75818	O103 no. 2 -LRB- strain 11117 -RRB- replicate 1	Gtype
GSE75818	O103 no. 2 -LRB- strain 11117 -RRB- replicate 2	Gtype
GSE75818	O103 no. 3 -LRB- strain 11711 -RRB- replicate 1	Gtype
GSE75818	O103 no. 3 -LRB- strain 11711 -RRB- replicate 2	Gtype
GSE75818	O103 no. 4 -LRB- strain 11845 -RRB- replicate 1	Gtype
GSE75818	O103 no. 4 -LRB- strain 11845 -RRB- replicate 2	Gtype
GSE75818	O103 no. 5 -LRB- strain 12009 -RRB- replicate 1	Gtype
GSE75818	O103 no. 5 -LRB- strain 12009 -RRB- replicate 2	Gtype
GSE75818	O103 no. 6 -LRB- strain PMK5 -RRB- replicate 1	Gtype
GSE75818	O103 no. 6 -LRB- strain PMK5 -RRB- replicate 2	Gtype
GSE75818	O111 no. 1 -LRB- strain 11109 -RRB- replicate 1	Gtype
GSE75818	O111 no. 1 -LRB- strain 11109 -RRB- replicate 2	Gtype
GSE75818	O111 no. 2 -LRB- strain 11128 -RRB- replicate 1	Gtype
GSE75818	O111 no. 2 -LRB- strain 11128 -RRB- replicate 2	Gtype
GSE75818	O111 no. 3 -LRB- strain 11619 -RRB- replicate 1	Gtype
GSE75818	O111 no. 3 -LRB- strain 11619 -RRB- replicate 2	Gtype
GSE75818	O111 no. 4 -LRB- strain 11788 -RRB- replicate 1	Gtype
GSE75818	O111 no. 4 -LRB- strain 11788 -RRB- replicate 2	Gtype
GSE75818	O111 no. 5 -LRB- strain 13369 -RRB- replicate 1	Gtype
GSE75818	O111 no. 5 -LRB- strain 13369 -RRB- replicate 2	Gtype
GSE75818	O111 no. 6 -LRB- strain ED71 -RRB- replicate 1	Gtype
GSE75818	O111 no. 6 -LRB- strain ED71 -RRB- replicate 2	Gtype
GSE75818	O157 no. 2 -LRB- strain 980938 -RRB- replicate 1	Gtype
GSE75818	O157 no. 2 -LRB- strain 980938 -RRB- replicate 2	Gtype
GSE75818	O157 no. 3 -LRB- strain 980706 -RRB- replicate 1	Gtype
GSE75818	O157 no. 3 -LRB- strain 980706 -RRB- replicate 2	Gtype
GSE75818	O157 no. 4 -LRB- strain 990281 -RRB- replicate 1	Gtype
GSE75818	O157 no. 4 -LRB- strain 990281 -RRB- replicate 2	Gtype
GSE75818	O157 no. 5 -LRB- strain 980551 -RRB- replicate 1	Gtype
GSE75818	O157 no. 5 -LRB- strain 980551 -RRB- replicate 2	Gtype
GSE75818	O157 no. 6 -LRB- strain 990570 -RRB- replicate 1	Gtype
GSE75818	O157 no. 6 -LRB- strain 990570 -RRB- replicate 2	Gtype
GSE75818	O157 no. 7 -LRB- strain 981456 -RRB- replicate 1	Gtype
GSE75818	O157 no. 7 -LRB- strain 981456 -RRB- replicate 2	Gtype
GSE75818	O157 no. 8 -LRB- strain 982243 -RRB- replicate 1	Gtype
GSE75818	O157 no. 8 -LRB- strain 982243 -RRB- replicate 2	Gtype
GSE75818	O157 no. 9 -LRB- strain 981795 -RRB- replicate 1	Gtype
GSE75818	O157 no. 9 -LRB- strain 981795 -RRB- replicate 2	Gtype
GSE75818	O26 no. 1 -LRB- strain 11044 -RRB- replicate 1	Gtype
GSE75818	O26 no. 1 -LRB- strain 11044 -RRB- replicate 2	Gtype
GSE75818	O26 no. 2 -LRB- strain 11368 -RRB- replicate 1	Gtype
GSE75818	O26 no. 2 -LRB- strain 11368 -RRB- replicate 2	Gtype
GSE75818	O26 no. 3 -LRB- strain 11656 -RRB- replicate 1	Gtype
GSE75818	O26 no. 3 -LRB- strain 11656 -RRB- replicate 2	Gtype
GSE75818	O26 no. 4 -LRB- strain 12719 -RRB- replicate 1	Gtype
GSE75818	O26 no. 4 -LRB- strain 12719 -RRB- replicate 2	Gtype
GSE75818	O26 no. 5 -LRB- strain 12929 -RRB- replicate 1	Gtype
GSE75818	O26 no. 5 -LRB- strain 12929 -RRB- replicate 2	Gtype
GSE75818	O26 no. 6 -LRB- strain 13065 -RRB- replicate 1	Gtype
GSE75818	O26 no. 6 -LRB- strain 13065 -RRB- replicate 2	Gtype
GSE75818	O26 no. 7 -LRB- strain 13247 -RRB- replicate 1	Gtype
GSE75818	O26 no. 7 -LRB- strain 13247 -RRB- replicate 2	Gtype
GSE75818	O26 no. 8 -LRB- strain ED411 -RRB- replicate 1	Gtype
GSE75818	O26 no. 8 -LRB- strain ED411 -RRB- replicate 2	Gtype
GSE75818	172mM SCFA replicate 1	Gtype
GSE75818	172mM SCFA replicate 2	Gtype
GSE75818	30mM SCFA replicate 1	Gtype
GSE75818	30mM SCFA replicate 2	Gtype
GSE75818	30mM SCFA replicate 3	Gtype
GSE75818	30mM SCFA replicate 4	Gtype
GSE75818	e. coli subset : enterohemorrhagic E.coli	Gtype
GSE75818	enterohemorrhagic E. coli _ 172mM short chain fatty acid mix	Gtype
GSE75818	30mM short chain fatty acid mix	Gtype
GSE75818	N172-1 	O
GSE75818	N172-2 	O
GSE75818	N30-1 	O
GSE75818	N30-2 	O
GSE75818	N30-3 	O
GSE75818	N30-4 	O
GSE75818	172mM NaCl	Gtype
GSE75818	172mM short chain fatty acid mix	Gtype
GSE75818	30mM NaCl	Gtype
GSE75818	30mM short chain fatty acid mix	Gtype
GSE75818	REC-Seq -LRB- restriction enzyme cleavage -- sequencing -RRB- 1 ug of genomic DNA from C. crescentus NA1000	Gtype
GSE75818	genotype 	O
GSE75818	GHA507 	O
GSE75818	Library strategy : REC-Seq	Gtype
GSE75818	OTHER 	Gtype
GSE75818	strain : K12	Gtype
GSE75818	cyc1 	O
GSE75818	cyc2 	O
GSE75818	cyc3 	O
GSE75818	cyc4 	O
GSE75818	cyd1 	O
GSE75818	cyd2 	O
GSE75818	cyd3 	O
GSE75818	cyd4 	O
GSE75818	dnaC genomic DNA , Sau3A , 2 ug	Gtype
GSE75818	reference 0 ' , min +.2 % glu , 25 ug RNA	Gtype
GSE75818	tnaA2trpA46PR9 , W3110 min , 30 ug total	Gtype
GSE75818	tnaA2 , W3110 min ,30 ug total	Gtype
GSE75818	tnaA2 , W3110 minimal + Trp 50ug	Gtype
GSE75988	trpR2 +50 ug	Gtype
GSE75988	trpR2tnaA2 , W3110 minimal + Trp 50ug	Gtype
GSE75988	30 ug total RNA	Gtype
GSE75988	30 ug total RNA	Gtype
GSE75988	W3110 wt , min +.2 % glucose , 30 ug RNA	Gtype
GSE75988	W3110 wt-trp , 30 ug total RNA	Gtype
GSE75988	W3110 wt + trp , 30 ug total RNA	Gtype
GSE75988	wt +50 ug	Gtype
GSE75988	47-mm diameter polycarbonate membrane filter -LRB- 0.4 µm pore size	Gtype
GSE75988	same cell density -LRB- OD630 = 0.1 -RRB- in the medium	Gtype
GSE75988	six-hour incubation period in the absence of hypoxanthine -LRB- high-dilution protocol -RRB- . The effectiveness of the latter	Gtype
GSE75988	control strain w	Gtype
GSE75988	gpt _ 0 _ Hx Rep3	Gtype
GSE75988	gpt _ 120 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE75988	gpt _ 120 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE7	gpt _ 120 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE7	gpt _ 15 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE7	gpt _ 15 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE7	gpt _ 15 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE7	30 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE7	30 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE7	30 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE7	gpt _ 45 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE7	gpt _ 45 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE7	gpt _ 45 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE7	gpt _ 60 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE7	gpt _ 60 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE7	gpt _ 60 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE7	gpt strain w	Gtype
GSE76167	optA1 _ 0 _ Hx Rep3	Gtype
GSE76167	optA1 _ 120 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE76167	optA1 _ 120 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE76167	optA1 _ 120 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE76167	optA1 _ 15 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE76167	optA1 _ 15 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE76167	optA1 _ 15 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE76167	30 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE76167	30 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE76167	30 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE76167	optA1 _ 45 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE76167	optA1 _ 45 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE76167	optA1 _ 45 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE76167	optA1 _ 60 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE76167	optA1 _ 60 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE76167	optA1 _ 60 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE76916	optA1 _ gpt _ 120 -LRB- High Dilution -RRB- Rep1	Gtype
GSE76916	optA1 _ gpt _ 120 -LRB- High Dilution -RRB- Rep2	Gtype
GSE76916	optA1 _ gpt _ 120 -LRB- High Dilution -RRB- Rep3	Gtype
GSE76916	optA1 _ gpt _ 120 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE76916	optA1 _ gpt _ 120 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE76916	optA1 _ gpt _ 120 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE76916	optA1 _ gpt _ 15 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE76916	optA1 _ gpt _ 15 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE76916	optA1 _ gpt _ 15 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE76916	optA1 _ gpt _ 180 -LRB- High Dilution -RRB- Rep1	Gtype
GSE76916	optA1 _ gpt _ 180 -LRB- High Dilution -RRB- Rep2	Gtype
GSE76916	optA1 _ gpt _ 180 -LRB- High Dilution -RRB- Rep3	Gtype
GSE76916	optA1 _ gpt _ 240 -LRB- High Dilution -RRB- Rep1	Gtype
GSE76916	optA1 _ gpt _ 240 -LRB- High Dilution -RRB- Rep2	Gtype
GSE76916	optA1 _ gpt _ 240 -LRB- High Dilution -RRB- Rep3	Gtype
GSE76916	optA1 _ gpt _ 300 -LRB- High Dilution -RRB- Rep1	Gtype
GSE76916	optA1 _ gpt _ 300 -LRB- High Dilution -RRB- Rep2	Gtype
GSE76916	optA1 _ gpt _ 300 -LRB- High Dilution -RRB- Rep3	Gtype
GSE76916	30 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE76916	30 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE76916	30 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE77008	optA1 _ gpt _ 360 -LRB- High Dilution -RRB- Rep1	Gtype
GSE77008	optA1 _ gpt _ 360 -LRB- High Dilution -RRB- Rep2	Gtype
GSE77008	optA1 _ gpt _ 360 -LRB- High Dilution -RRB- Rep3	Gtype
GSE77008	optA1 _ gpt _ 360 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE77008	optA1 _ gpt _ 360 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE77008	optA1 _ gpt _ 360 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE77008	optA1 _ gpt _ 45 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE77008	optA1 _ gpt _ 45 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE77008	optA1 _ gpt _ 45 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE77008	optA1 _ gpt _ 60 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE77008	optA1 _ gpt _ 60 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE77008	optA1 _ gpt _ 60 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE77008	optA1 gpt strain w	Gtype
GSE77008	optA1 gpt strain with hypoxanthine	Gtype
GSE77008	optA1 strain w	Gtype
GSE77009	strain : MG1655	Gtype
GSE77009	WT _ 0 _ Hx Rep1	O
GSE77009	WT _ 0 _ Hx Rep2	O
GSE77009	WT _ 0 _ Hx Rep3	Gtype
GSE77009	WT _ 120 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE77009	WT _ 120 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE77009	WT _ 120 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE77009	WT _ 15 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE77009	WT _ 15 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE77009	WT _ 15 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE77009	WT _ 30 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE77009	WT _ 30 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE77009	WT _ 30 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE77009	WT _ 45 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE77009	WT _ 45 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE77176	WT _ 45 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE77176	WT _ 60 -LRB- Low Dilution -RRB- Rep1	Gtype
GSE77176	WT _ 60 -LRB- Low Dilution -RRB- Rep2	Gtype
GSE77176	WT _ 60 -LRB- Low Dilution -RRB- Rep3	Gtype
GSE77176	E. coli strain K12	Gtype
GSE77176	E. coli strain NM580 -LRB- genotype MG1655 ermBL-ermB ' : : LacZ -RRB-	Gtype
GSE77177	RNA-Seq 	O
GSE77177	The total sequencing base pair coverage	Gtype
GSE77177	treatment : clindamycin	Gtype
GSE77177	treatment : erythromycin	Gtype
GSE77177	treatment : untreated	Gtype
GSE77177	Untreated _ replicate _ 2	Gtype
GSE77177	Aerobic 1	Air
GSE77177	Aerobic 2	Air
GSE77177	Aerobic and anaerobic	Air
GSE77177	Anaerobic 1	Air
GSE77177	Anaerobic 3	Air
GSE77181	growth environment : Aerobic	Gtype
GSE77181	growth phase : Stationary phase	Gtype
GSE77181	RNA-Seq 	O
GSE77181	strain : REL4536	Gtype
GSE77181	Tab-delimited text files include RPKM values	Gtype
GSE77325	strain : TB1	Gtype
GSE77325	0 min Nov0 ug	Gtype
GSE77325	0 min Nov500 ug	Gtype
GSE77325	genotype : Wildtype	Gtype
GSE77325	genotype : Wildtype with vector	Gtype
GSE77325	MG1655 	O
GSE77325	RNA-Seq 	O
GSE77617	condition : in vitro	Gtype
GSE77617	condition : in vivo	Gtype
GSE77617	E058 in vitro , biological rep1	Gtype
GSE77617	E058 in vitro , biological rep2	Gtype
GSE77617	E058 in vivo , biological rep1	Gtype
GSE77617	E058 in vivo , biological rep2	Gtype
GSE77617	E058 in vivo , biological rep3	Gtype
GSE77617	strain : O2	Gtype
GSE77617	20 min Nov0 ug	Gtype
GSE77617	20 min Nov500 ug	Gtype
GSE77617	20 min Nov50 ug	Gtype
GSE78814	Four ml of the bacterial suspension	Gtype
GSE78814	Escherichia coli -LRB- DH10B -RRB-	Gtype
GSE78814	gentamycin concentration -LRB- ug	Gtype
GSE78814	location : Earth	Gtype
GSE78814	location : Space	Gtype
GSE78814	HudsonAlpha 's unique in-house RNA-seq data analysis pipeline	Gtype
GSE78814	mismatch cost = 2 , insertion and deletion cost = 3 , length fraction : 0.8 , similarity fraction = 0.8 , global alignment = no , auto-detect paired	Gtype
GSE78814	RNA-Seq 	O
GSE78814	strain : ATCC 4157	Gtype
GSE78814	content : excel file include RPKM values	Gtype
GSE78814	2 min Nov10 ug	Gtype
GSE78814	2 min Nov2 ug	Gtype
GSE78814	2 min Nov5 ug	Gtype
GSE78814	completely aerobic conditions	Air
GSE78814	all the log ratios of the same gene from each slide	Gtype
GSE79305	aerobicanaerobic _ 0 min	Gtype
GSE79305	aerobicanaerobic _ 15 min	Gtype
GSE79305	aerobicanaerobic _ 2 min	Gtype
GSE79305	aerobicanaerobic _ 35 min	Gtype
GSE79305	aerobicanaerobic _ 45 min	Gtype
GSE79305	aerobicanaerobic _ 5 min	Gtype
GSE7931	median Cy3 -LRB- green -RRB- foreground and background	Gtype
GSE7931	further analysis if the foreground intensity of less than 50 % of the pixels within the spot	Gtype
GSE7931	when the intensity of the background was higher	Gtype
GSE7931	of -LRB- F _ r-B _ r -RRB-	Gtype
GSE7931	average from all the individual log ratios	Gtype
GSE7931	Two color cDNA microarray data are never devoid of spurious technical contributions that	Gtype
GSE7931	Two color cDNA microarray data are never devoid of spurious technical contributions that originate during array	Gtype
GSE7931	further analysis if the foreground intensity of less than 50 % of the pixels within the spot were above 2 standard deviations of the background	Gtype
GSE7931	40 min Nov10 ug	Gtype
GSE7931	40 min Nov2 ug	Gtype
GSE7931	40 min Nov5 ug	Gtype
GSE7931	CAR005 	Gtype
GSE7931	CAR005 strain	Phase
GSE7931	G4H14 	O
GSE7931	G4H14 strain	Phase
GSE7931	IspG1 	O
GSE7931	IspG1 strain	Phase
GSE7931	Reads Per Kilobase of exon per Megabase of library size -LRB- RPKM -RRB-	Gtype
GSE7931	RNA-Seq 	O
GSE7931	strain : CAR005	Gtype
GSE7931	strain : G4H14	Gtype
GSE7931	strain : IspG1	Gtype
GSE7931	content : -LSB- . txt -RSB- tab-delimited text file includes RPKM values	Gtype
GSE7931	growth condition : normal condtion -LRB- 5 % w	Gtype
GSE7931	growth condition : osmotic stress condtion -LRB- 12 % w	Gtype
GSE7931	NZ502 _ 12 % Glu	Gtype
GSE7931	Reads Per Kilobase of exon per Megabase of library size -LRB- RPKM -RRB-	Gtype
GSE7931	RNA-Seq 	O
GSE7931	strain : NZ-502 -LRB- RpoB mutant -RRB-	Gtype
GSE7931	strain : Suc-T110 -LRB- parental strain -RRB-	Gtype
GSE7931	SucT110 _ 12 % Glu	Gtype
GSE7931	tab-delimited text files include RPKM values	Gtype
GSE7931	ChIP-Seq 	O
GSE7931	growth condition : Static +	Gtype
GSE7931	replicate : 1	Gtype
GSE7931	replicate : 2	Gtype
GSE7931	Sig70 in E. coli , exponential aerobic growth , no rifampicin applied replicate 1 -LRB- run 299 -RRB-	Gtype
GSE7931	Sig70 in E. coli , exponential aerobic growth , no rifampicin applied replicate 1 -LRB- run 423 -RRB-	Gtype
GSE7931	Sig70 in E. coli , exponential aerobic growth , no rifampicin applied replicate 2 -LRB- run 299 -RRB-	Gtype
GSE7931	Sig70 in E. coli , exponential aerobic growth , no rifampicin applied replicate 2 -LRB- run 423 -RRB-	Gtype
GSE7931	replicate 2 -LRB- run 423 -RRB-	Gtype
GSE7931	Sig70 in E. coli , static aerobic growth , no rifampicin applied replicate 1 -LRB- run 299 -RRB-	Gtype
GSE7931	Sig70 in E. coli , static aerobic growth , no rifampicin applied replicate 2 -LRB- run 299 -RRB-	Gtype
GSE7931	glucose-minimal medium -LRB- IPTG induction -RRB- in early log phase -LRB- u = 0.25 h-1 -RRB-	Gtype
GSE79509	LB-glucose medium -LRB- IPTG induction -RRB- in chemostat -LRB- D = 0.1 h-1 -RRB-	Gtype
GSE79509	E. coli W3110 -LRB- KCTC 2223 -RRB-	Gtype
GSE79509	E. coli W3110 -LRB- KCTC 2223 -RRB-	Gtype
GSE79509	E. coli W3110 -LRB- KCTC 2223 -RRB- at LB-GlC medium , D = 0.1 h-1	Gtype
GSE79509	early log phase -LRB- u = 0.25 -RRB-	Gtype
GSE79509	PCK _ glucose-minimal medium _ early log phase	Gtype
GSE79509	PCK _ LB-GlC medium _ D = 0.1 h-1	Gtype
GSE79509	glucose-minimal medium _ early log phase	Gtype
GSE79509	LB-GlC medium _ D = 0.1 h-1	Gtype
GSE79509	W3110 -LRB- KCTC 2223 -RRB-	Gtype
GSE79880	37 °C	Temp
GSE79880	culture temperature : 42 °C	Gtype
GSE79880	0.1 mM IPTG	Supp
GSE7	vector : pET-28a	Gtype
GSE7	vector : pET-28a-BnTR1	Gtype
GSE7	∆ dapF parent Sample 28	Gtype
GSE7	∆ dapF parent Sample 47	Gtype
GSE7	∆ dapF parent Sample 9	Gtype
GSE7	dapF suppressor 1-1 Sample 10	Gtype
GSE7	dapF suppressor 1-1 Sample 29	Gtype
GSE7	dapF suppressor 1-1 Sample 48	Gtype
GSE7	dapF suppressor 3-1 Sample 49	Gtype
GSE7	∆ dgk parent Sample 16	Gtype
GSE7	∆ dgk parent Sample 35	Gtype
GSE7	∆ dgk parent Sample 54	Gtype
GSE7	dgk suppressor 1-1 Sample 17	Gtype
GSE7	dgk suppressor 1-1 Sample 36	Gtype
GSE7	dgk suppressor 1-1 Sample 55	Gtype
GSE7	dgk suppressor 2-1 Sample 18	Gtype
GSE7	dgk suppressor 2-1 Sample 37	Gtype
GSE7	dgk suppressor 2-1 Sample 56	Gtype
GSE7	dgk suppressor 3-1 Sample 19	Gtype
GSE7	dgk suppressor 3-1 Sample 38	Gtype
GSE7	dgk suppressor 3-1 Sample 57	Gtype
GSE80002	∆ entC parent Sample 12	Gtype
GSE80002	∆ entC parent Sample 31	Gtype
GSE80002	∆ entC parent Sample 50	Gtype
GSE80002	entC suppressor 1-1 Sample 32	Gtype
GSE80002	entC suppressor 1-1 Sample 51	Gtype
GSE80002	entC suppressor 2-1 Sample 14	Gtype
GSE80002	entC suppressor 2-1 Sample 33	Gtype
GSE80002	entC suppressor 2-1 Sample 52	Gtype
GSE80002	entC suppressor 3-1 Sample 34	Gtype
GSE80002	E. coli strain BW25113	Gtype
GSE80002	∆ ppk parent Sample 24	Gtype
GSE80002	∆ ppk parent Sample 43	Gtype
GSE80002	∆ ppk parent Sample 5	Gtype
GSE80002	ppk suppressor 1-1 Sample 25	Gtype
GSE80002	ppk suppressor 1-1 Sample 44	Gtype
GSE80002	ppk suppressor 1-1 Sample 6	Gtype
GSE80002	ppk suppressor 2-1 Sample 26	Gtype
GSE80002	ppk suppressor 2-1 Sample 45	Gtype
GSE80002	ppk suppressor 2-1 Sample 7	Gtype
GSE80002	ppk suppressor 3-1 Sample 27	Gtype
GSE80002	ppk suppressor 3-1 Sample 46	Gtype
GSE80002	ppk suppressor 3-1 Sample 8	Gtype
GSE80002	RNA-Seq 	Gtype
GSE80002	strain : BW25113	Gtype
GSE80002	∆ zwf parent Sample 2	Gtype
GSE80002	∆ zwf parent Sample 21	Gtype
GSE80002	∆ zwf parent Sample 40	Gtype
GSE80002	zwf suppressor 1-1 Sample 22	Gtype
GSE80002	zwf suppressor 1-1 Sample 3	Gtype
GSE80002	zwf suppressor 1-1 Sample 41	Gtype
GSE80002	zwf suppressor 1-2 Sample 23	Gtype
GSE80002	zwf suppressor 1-2 Sample 4	Gtype
GSE80002	zwf suppressor 1-2 Sample 42	Gtype
GSE80002	conversion : Convert SOLiD output to fastq -LRB- Galaxy Version 1.0.0 -RRB- ; default parameters	Gtype
GSE80002	37 °C	Temp
GSE80002	differential expression : Bioconductor package edgeR -LRB- version 3.2.3 -RRB- ; default parameters	Gtype
GSE80002	EHEC 	Gtype
GSE80002	Symbioflor within the agar	Gtype
GSE80002	Escherichia coli O157 : H7 str . EDL933	Gtype
GSE80002	LB agar plates , 37 °C for 18 h	O
GSE80002	mapping : bowtie -LRB- Galaxy Version 1.1.2 -RRB- ; 28 nt seed length , maximal two mismatches in the seed , a maximal threshold of 70 for the sum of the quality values	Gtype
GSE80002	medium : LB	Gtype
GSE80002	RNA-Seq 	O
GSE80002	content : xlsx : logFC and p-value	Gtype
GSE80002	symbioflor status : without Symbioflor	Gtype
GSE80002	symbioflor status : with Symbioflor	Gtype
GSE80002	H7 EDL933	Gtype
GSE80002	Co-hybridization of E. coli isolate G 4	Gtype
GSE80002	Co-hybridization of E. coli O157 : H7 EDL933	Gtype
GSE80002	Co-hybridization of E. coli O157 : H7 EDL933	Gtype
GSE80002	control strain K-12 MG1655	Gtype
GSE80002	control strain O157 : H7 EDL933	Gtype
GSE80002	E. coli O157 : H7 EDL933	Gtype
GSE80002	Isolate G 1	Gtype
GSE80002	Isolate G 4	Gtype
GSE80002	Isolate G5 of Symbioflor2 probiotic product from Symbiopharm	Gtype
GSE80002	log2 ratio of isolate	Gtype
GSE80002	overnight in Luria-Bertani -LRB- LB	Med
GSE80002	-RRB- broth with continuous agitation	Gtype
GSE80002	overnight in Lurie-Bertani -LRB- LB	Med
GSE80002	-RRB- broth with continuous agitation	Gtype
GSE80002	E. coli ATCC 25922 marR deletion + QnrS replicate 1	Gtype
GSE80002	E. coli ATCC 25922 QnrS replicate 1	Gtype
GSE80002	evaluate the global response to relevant fix concentration of ciprofloxacin -LRB- 1 mg	Gtype
GSE80002	Exponential cells -LRB- DO600 = 0,4 -RRB-	Gtype
GSE80251	genotype 	Gtype
GSE80251	substrain : ATCC 25922	Gtype
GSE80251	substrain : EC14	Gtype
GSE80251	substrain : EC19	Gtype
GSE80251	substrain : EC24	Gtype
GSE80251	Wild-type E. coli ATCC 25922 replicate 1	Gtype
GSE80251	Wild-type E. coli ATCC 25922 replicate 2	Gtype
GSE80251	2.5 mM Fumaric acid	Gtype
GSE80251	Escherichia coli O157 : H7	Gtype
GSE80251	genotype 	O
GSE80251	O157 : H7 EDL933 in	Gtype
GSE80251	O157 : H7 EDL933 sdhA in	Gtype
GSE80251	O157 : H7 EDL933 sdhA in LB	Gtype
GSE80251	strain background : EDL933	Gtype
GSE80451	.	O
GSE80451	10J .0	Gtype
GSE80451	11K .60	OD
GSE80451	12L .120	Gtype
GSE80451	200 bp insert , rRNA depletion	Gtype
GSE80451	7G .0	Gtype
GSE80451	biological replicate : Replicate 1	Gtype
GSE80451	biological replicate : t = 0 Replicate 1	Gtype
GSE80451	biological replicate : t = 0 replicate 2	Gtype
GSE80451	t = 2 hours	Gtype
GSE80451	Escherichia coli MG1655 reference genome -LRB- NC _ 00091313-Feb-2011	Gtype
GSE80451	t = 1 hour	Gtype
GSE80451	RNA-Seq 	Gtype
GSE80451	FastQC version 0.10.1 -LRB- www.bioinformatics.babraham.ac.uk	Gtype
GSE80451	5 mL of ice-cold EtOH	Gtype
GSE80451	Stationary phase t = 0	Gtype
GSE80451	time post release : E. coli cells 1 hour following release from Stationary phase -LRB- t = 1 -RRB-	Gtype
GSE80451	release from Stationary phase -LRB- t = 2 -RRB-	Gtype
GSE80827	release from Stationary phase t = 0	Gtype
GSE80827	BW25113 hha deletion mutant LB	Gtype
GSE80827	BW25113 hha mutant LB glu 15 hr biofilm cells	Gtype
GSE80827	BW25113 hha mutant LB glu 24 hr biofilm cells	Gtype
GSE80827	BW25113 hha mutant LB glu 4 hr biofilm cells	Gtype
GSE80827	BW25113 w	Phase
GSE80827	wild type	Gtype
GSE80827	wild type	Gtype
GSE80827	wild type	Gtype
GSE80827	wild type	Gtype
GSE80827	75th percentile shift normalisation and baseline adjusted	Gtype
GSE80827	agent : 1x CORM2	Gtype
GSE80827	agent : 1x vehicle	Gtype
GSE80827	agent : 20x CORM2	Gtype
GSE80827	agent : 20x vehicle	Gtype
GSE80827	E.coli-1x CORM2-rep1	Phase
GSE80827	E.coli-1x CORM2-rep2	Phase
GSE80827	E.coli-1x CORM2-rep3	Phase
GSE80827	E.coli-1x CORM2-rep4	Phase
GSE80827	E.coli-1x vehicle-rep1	Phase
GSE8	E.coli-1x vehicle-rep2	Phase
GSE8	E.coli-1x vehicle-rep3	Phase
GSE8	E.coli-1x vehicle-rep4	Phase
GSE8	E.coli-20x CORM2-rep1	Phase
GSE8	E.coli-20x CORM2-rep2	Phase
GSE8	E.coli-20x CORM2-rep3	Phase
GSE8	E.coli-20x CORM2-rep4	Phase
GSE8	E.coli-20x vehicle-rep1	Phase
GSE8	E.coli-20x vehicle-rep2	Phase
GSE81584	E.coli-20x vehicle-rep3	Phase
GSE81584	E.coli-20x vehicle-rep4	Phase
GSE81584	RNA-Seq 	O
GSE81584	0 %	Gtype
GSE81584	100 %	Gtype
GSE81584	26 %	Gtype
GSE81584	strain : BW27786 -LRB- K-12 derivative -RRB-	Gtype
GSE81584	strain : DMS2545 -LRB- K-12 derivative -RRB-	Gtype
GSE81584	strain : DMS2564 -LRB- K-12 derivative -RRB-	Gtype
GSE81974	7 min Nov0 ug	Gtype
GSE81974	7 min Nov500 ug	Gtype
GSE81974	80 min Nov10 ug	Gtype
GSE81974	80 min Nov5 ug	Gtype
GSE81974	OTHER 	O
GSE8	RF2 * _ exp1 _ ribosome	Gtype
GSE8	RF2 * _ exp3 _ mRNA	Gtype
GSE8	RF2 * _ exp3 _ ribosome	Gtype
GSE8	RF2 * ∆ RF3 _ exp2 _ repA _ mRNA	Gtype
GSE8	RF2 * ∆ RF3 _ exp2 _ repA _ ribosome	Gtype
GSE82341	RF2 * ∆ RF3 _ exp2 _ repB _ mRNA	Gtype
GSE82341	RF2 * ∆ RF3 _ exp2 _ repB _ ribosome	Gtype
GSE82341	RF2 * ∆ RF3 _ exp3 _ mRNA	Gtype
GSE82341	RF2 * ∆ RF3 _ exp3 _ ribosome	Gtype
GSE82341	RF2 * ∆ RF3 _ exp4 _ repA _ mRNA	Gtype
GSE82341	RF2 * ∆ RF3 _ exp4 _ repA _ ribosome	Gtype
GSE82341	RF2 * ∆ RF3 _ exp4 _ repB _ mRNA	Gtype
GSE82341	RF2 * ∆ RF3 _ exp4 _ repB _ ribosome	Gtype
GSE82341	∆ RF3 _ exp1 _ mRNA	Gtype
GSE82341	∆ RF3 _ exp1 _ ribosome	Gtype
GSE82341	∆ RF3 _ exp3 _ mRNA	Gtype
GSE82341	∆ RF3 _ exp3 _ ribosome	Gtype
GSE82341	∆ RF3 _ minimal _ mRNA	Gtype
GSE82341	∆ RF3 _ minimal _ ribosome	Gtype
GSE82341	RNA-Seq 	Gtype
GSE82341	strain : K12 MG1655	Gtype
GSE82341	strain : K12 MG1655 deltaprfC	Gtype
GSE82341	strain : K12 MG1655 prfB-Bstrain allele	Gtype
GSE82341	strain : K12 MG1655 prfB-Bstrain allele deltaprfC	Gtype
GSE82341	whole cell lysate	Gtype
GSE82341	WT _ exp1 _ mRNA	Gtype
GSE82341	WT _ exp1 _ ribosome	Gtype
GSE82341	WT _ exp2 _ mRNA	Gtype
GSE82341	WT _ exp2 _ ribosome	Gtype
GSE82341	WT _ exp3 _ mRNA	Gtype
GSE82341	WT _ exp3 _ ribosome	Gtype
GSE82341	WT _ exp4 _ mRNA	Gtype
GSE82341	WT _ exp4 _ ribosome	Gtype
GSE82341	WT _ minimal _ mRNA	Gtype
GSE82341	WT _ minimal _ ribosome	Gtype
GSE82341	Flask state 2 -LRB- IPTG +	Gtype
GSE82341	Flask state 6 -LRB- IPTG +	Gtype
GSE82341	Flask state 8 -LRB- IPTG +	Gtype
GSE82341	the htseq-count command of the HTSeq toolkit	Gtype
GSE82341	RNA-Seq 	O
GSE82341	strain : NEB 10-beta	Gtype
GSE8323	Enteroheamorragic E. coli	Gtype
GSE8323	Enteropathogenic E. coli	Gtype
GSE8323	Genomic DNA from O55 : H6 strain ICC219	Gtype
GSE8323	Genomic DNA from O55 : H6 strain ICC221	Gtype
GSE8323	Genomic DNA from O55 : H6 strain ICC222	Gtype
GSE8323	Genomic DNA from O55 : H7 strain st58	Gtype
GSE8323	Genomic DNA from O55 : H7 strain st957	Gtype
GSE8323	Genomic DNA from O55 : H7 strain TB182A	Gtype
GSE8323	Genomic DNA from O55 : H7 strain WC211	Gtype
GSE8323	Genomic DNA from O55 : H7 strain WC416	Gtype
GSE8323	O55 : H6 ICC219 replicate 1	Gtype
GSE8323	O55 : H6 ICC219 replicate 2	Gtype
GSE8323	O55 : H6 ICC221 replicate 1	Gtype
GSE8323	O55 : H6 ICC221 replicate 2	Gtype
GSE8323	O55 : H6 ICC222 replicate 1	Gtype
GSE8323	O55 : H6 ICC222 replicate 2	Gtype
GSE8323	O55 : H7 st58 replicate 1	Gtype
GSE8323	O55 : H7 st58 replicate 2	Gtype
GSE8323	O55 : H7 st957 replicate 1	Gtype
GSE8323	O55 : H7 st957 replicate 2	Gtype
GSE8323	O55 : H7 TB182A replicate 1	Gtype
GSE8323	O55 : H7 TB182A replicate 2	Gtype
GSE8323	O55 : H7 WC211 replicate 1	Gtype
GSE8323	O55 : H7 WC211 replicate 2	Gtype
GSE8323	O55 : H7 WC416 replicate 1	Gtype
GSE8323	O55 : H7 WC416 replicate 2	Gtype
GSE8323	ChIP-Seq 	O
GSE8323	genotype : ompR-8myc	Gtype
GSE8323	K-12 MG1655	Gtype
GSE8323	Tab-delimited text files in gff format which has 8 columns : sequence id , source -LRB- empty -RRB- , feature -LRB- +	Gtype
GSE8323	genotype : ompR deletion mutant	Gtype
GSE8	RNA-Seq 	O
GSE84255	K-12 MG1655	Gtype
GSE84255	comma-delimited text files include FPKM values	Gtype
GSE84255	WT NaCl 2	Gtype
GSE84255	ΔompR NaCl 1	Gtype
GSE84255	ΔompR NaCl 2	Gtype
GSE84255	30 min minus ciprofloxacin	Supp
GSE84255	30 min plus ciprofloxacin	Supp
GSE84255	30 min	Supp
GSE84769	30 min	Supp
GSE84769	Escherichia coli O25b : H4-ST131	Gtype
GSE84769	isolate : UR40	Gtype
GSE84769	RNA-Seq 	Gtype
GSE84769	content : * txt , * xml : These files contain the raw	Gtype
GSE84769	time point : 0 min	Gtype
GSE84769	30 min	Supp
GSE84769	time point : 90 min	Gtype
GSE84769	treatment : ciprofloxacin	Gtype
GSE85807	dnaC2 synchrony 30 ' after shift , print 7 array	Gtype
GSE85914	growth temperature : 30C	Gtype
GSE85914	heat shock time : 0 min	Gtype
GSE85914	heat shock time : 10 min	Gtype
GSE85914	heat shock time : 20 min	Gtype
GSE85914	heat shock time : None	Gtype
GSE85914	0.2 % arabinose	Gtype
GSE85914	induction : None	Gtype
GSE85914	OTHER 	Gtype
GSE85914	plasmid : None	Gtype
GSE85914	plasmid : pBAD	Gtype
GSE85914	plasmid : pBADsigma32I54N	Gtype
GSE85914	plasmid : pBADsigma32wt	Gtype
GSE85914	replicate : 1	Gtype
GSE85914	replicate : 2	Gtype
GSE85914	replicate : 3	Gtype
GSE85914	replicate : 4	Gtype
GSE85914	RNA-Seq 	Gtype
GSE85914	heatshock _ normalizedcounts.txt : Tab-delimited text	Gtype
GSE85914	heatshock _ rawcounts.txt : Tab-delimited text file has raw read counts per kilobase million	Gtype
GSE85914	treatment temperature : 30C	Gtype
GSE85914	treatment temperature : 42C	Gtype
GSE85914	growth protocol : Log-phase culture -LRB- LB	Gtype
GSE85950	growth protocol : Log-phase culture -LRB- LB	Gtype
GSE85950	parent strain : BW27785	Gtype
GSE85950	phenotype : Blue colony-color -LRB- prion-containing -RRB-	Gtype
GSE85950	phenotype : Pale colony-color -LRB- prion-lacking -RRB-	Gtype
GSE85950	RNA-Seq 	O
GSE85950	Total RNA extracted from Rho prion-containing cells	Gtype
GSE85950	Total RNA extracted from Rho prion-lacking cells	Gtype
GSE85950	chemostat STR culture	Phase
GSE85950	chemostat STR-PFR culture	Phase
GSE8595	chemostat STR-PFR culture PFR P1 28h , rep1	Gtype
GSE8595	chemostat STR-PFR culture PFR P1 28h , rep2	Gtype
GSE8595	chemostat STR-PFR culture PFR P3 28h , rep1	Gtype
GSE8595	chemostat STR-PFR culture PFR P3 28h , rep2	Gtype
GSE8595	chemostat STR-PFR culture PFR P5 25h , rep1	Gtype
GSE8595	chemostat STR-PFR culture PFR P5 25h , rep2	Gtype
GSE8595	chemostat STR-PFR culture PFR P5 26h , rep2	Gtype
GSE8595	chemostat STR-PFR culture PFR P5 28h , rep1	Gtype
GSE8595	chemostat STR-PFR culture PFR P5 28h , rep2	Gtype
GSE86632	trace element solution -LRB- 0.11 g Na3C6H5O7 , 0.00835 g FeCl3 · 6 H2O , 0.00009 g ZnSO4 · 7 H2O , 0.00005 g MnSO4 · H2O , 0.0008 g CuSO4 · 5 H2O , 0.00009 g CoCl2 · 6 H2O , 0.0044 g CaCl2 · 2 H2O , 0.1 g MgSO4 · 7 H2O -RRB-	Gtype
GSE86632	AP009048 .1 -RRB- -RRB-	Gtype
GSE86632	replicate : 1	Gtype
GSE86632	replicate : 2	Gtype
GSE86632	RNA-Seq 	Gtype
GSE86632	sample port : PFR P1	Gtype
GSE86632	sample port : PFR P3	Gtype
GSE86632	sample port : PFR P5	Gtype
GSE86632	sample port : STR	Gtype
GSE86632	AP009048 .1 -RRB- using the RNA-seq aligner STAR v. 2.4.2 a.	Gtype
GSE86632	strain : K12 W3110	Gtype
GSE87071	time : 0-15h	Gtype
GSE87071	time : 0-16h	Gtype
GSE87071	time : 0-2h	Gtype
GSE87071	time : 10 min	Gtype
GSE87071	time : 120 min	Gtype
GSE87071	time : 210 min	Gtype
GSE87071	time : 25h	Gtype
GSE87071	time : 25 min	Gtype
GSE87071	time : 26h	Gtype
GSE87071	time : 28h	Gtype
GSE87071	time : 330 min	Gtype
GSE87071	time : 45 min	Gtype
GSE87071	time : 5 min	Gtype
GSE87071	time : 75 min	Gtype
GSE87071	0 ' , before UV treatment , 25 ug total RNA , 2 ug pdN6	Gtype
GSE87071	UV 25 ug total RNA , 2 ug pdN6	Gtype
GSE87071	0 ' wt , before UV treatment , 25 ug total RNA , 2 ug pdN6	Gtype
GSE87071	ATCACG-D1 	Gtype
GSE87071	CGATGT-D2 	Gtype
GSE87071	Differential gene expression -LRB- DGE -RRB-	Gtype
GSE8708	genotype 	Gtype
GSE8708	RNA-Seq 	O
GSE8708	source : Bustamante et al. , 2011	Gtype
GSE8708	strain : JPEP22	Gtype
GSE8708	R -LRB- version 3.1.2 -RRB- using the cummeRbund package -LRB- version 3.0 -RRB-	Gtype
GSE8708	content : bedgraph : Data presented in a 4 column BED format , of which the first column is the chromosome , the second column is the start position of the chromosome , the third column is the end position , and the fourth column is the fragments	Gtype
GSE8708	specified as 0-relative . The first chromosome position is 0 . The last position in a chromosome of length N would be N	Gtype
GSE8708	tabular : Tabular data that informs the excel spreadsheet	Gtype
GSE8708	TTAGGC-D3 	O
GSE8708	H6 reference genome -LRB- EMBL	Gtype
GSE8708	Whole bacterial cell RNA transcriptome	Gtype
GSE87627	Genotype : E. coli K12	Gtype
GSE87627	W3110 lsrK mutants	Gtype
GSE87627	W3110 lsrK mutants	Gtype
GSE87627	W3110 lsrR mutants	Gtype
GSE87627	W3110 wild type	Gtype
GSE87627	W3110 wild type , biological rep1	Gtype
GSE87627	W3110 wild type , biological rep2	Gtype
GSE87627	20 min UVtreatment control , MG1655 in Davis +0.4 % glu	Gtype
GSE87627	antibody : Monoclonal ANTI-FLAG M2 antibody -LRB- F3165 -RRB-	Gtype
GSE87627	background : crp mutant background , fis flag tag	Gtype
GSE87627	background : fis mutant background , crp flag tag	Gtype
GSE87627	background : wild type , crp flag tag	Gtype
GSE87627	background : wild type , fis flag tag	Gtype
GSE87627	f BAMPE parameter	Gtype
GSE87856	ChIP-Seq 	O
GSE87856	crp.ee.chipseq 	O
GSE87856	crp.ee.input 	O
GSE87856	crp.me.chipseq 	O
GSE87856	crp.me.input 	O
GSE87856	crpmutant.fis.ee.chipseq 	O
GSE87856	crpmutant.fis.ee.input 	O
GSE87856	crpmutant.fis.me.chipseq 	O
GSE87856	crpmutant.fis.me.input 	O
GSE87856	fis.ee.chipseq 	Substrain
GSE87856	fis.ee.input 	Substrain
GSE87856	fis.me.chipseq 	Substrain
GSE87856	fis.me.input 	Substrain
GSE87856	fismutant.crp.ee.chipseq 	Substrain
GSE87856	fismutant.crp.ee.input 	Substrain
GSE87856	fismutant.crp.me.chipseq 	Substrain
GSE87856	fismutant.crp.me.input 	Substrain
GSE87856	NC000913 .2	Gtype
GSE87856	growth phase : Early exponential	Gtype
GSE87856	Mid exponential	Gtype
GSE87856	Duplicate O	Gtype
GSE87856	induced 50 µM IPTG	Supp
GSE87856	ORF1 _ 1 _ IPTG	Supp
GSE87856	ORF1 _ 2 _ IPTG	Supp
GSE87856	replicates : ORF1 replicate 1	Gtype
GSE8	replicates : ORF1 replicate 2	Gtype
GSE8	replicates : Svi3-3 replicate 1	Gtype
GSE8	replicates : Svi3-3 replicate 2	Gtype
GSE8	WT replicate 1	Gtype
GSE88725	WT replicate 2	Gtype
GSE88725	RNA-Seq 	Gtype
GSE88725	content : The columns in the processed files are the following in order : GeneID , Length , ORF1	Gtype
GSE88725	The pCA24N,-gfp	Gtype
GSE88725	TruSeq 	Gtype
GSE88725	WT1 _ IPTG	Supp
GSE88725	WT2 _ IPTG	Supp
GSE88725	30 min	Supp
GSE88725	30 min	Supp
GSE88725	30 min	Supp
GSE88725	30 min	Supp
GSE88725	genotype : TolC defective -LRB- TolC - -RRB-	Gtype
GSE88725	planktonic cells	Med
GSE88725	RNA-Seq 	O
GSE88725	content : The tab-delimited text files include raw read values	Gtype
GSE88725	time point -LRB- minutes -RRB- : 0	Gtype
GSE88725	time point -LRB- minutes -RRB- : 15	Gtype
GSE88725	time point -LRB- minutes -RRB- : 5	Gtype
GSE88725	treatment : 0.5 µg	Gtype
GSE88725	antibody : anti-FLAG mAb	Gtype
GSE88725	antibody vendor	Phase
GSE88725	ChIP-Seq 	O
GSE88835	U00096 .2 -LRB- GenBank -RRB-	Gtype
GSE88835	U00096 .2	Gversion
GSE88835	RNA-Seq 	Gversion
GSE88835	strain : MG1655	Gtype
GSE88835	transcription factor : CsiR	Gtype
GSE88835	transcription factor : Nac	Gtype
GSE88835	transcription factor : NtrC	Gtype
GSE88835	transcription factor : OmpR	Gtype
GSE88835	batch : 10	Gtype
GSE88835	batch : 11	Gtype
GSE88835	batch : 12	Gtype
GSE88835	batch : 13	Gtype
GSE88835	batch : 14	Gtype
GSE88835	batch : 15	Gtype
GSE88835	batch : 16	Gtype
GSE88835	batch : 17	Gtype
GSE8889	batch : 18	Gtype
GSE8889	batch : 19	Gtype
GSE8889	batch : 20	Gtype
GSE8889	batch : 21	Gtype
GSE8889	batch : 22	Gtype
GSE8889	batch : 23	Gtype
GSE8889	batch : 24	Gtype
GSE8889	batch : 25	Gtype
GSE8889	batch : 26	Gtype
GSE8889	batch : 27	Gtype
GSE8889	batch : 7	Gtype
GSE8889	batch : 8	Gtype
GSE8889	batch : 9	Gtype
GSE8889	bowtie2-build final _ reference _ seqs	Gtype
GSE8889	carbon source : gluconate	Gtype
GSE8889	carbon source : glucose	Gtype
GSE8889	carbon source : glycerol	Gtype
GSE8889	carbon source : lactate	Gtype
GSE8889	exponential culture	Gtype
GSE8889	reference sequence is REL606	Gtype
GSE89507	growth phase : exponential	Gtype
GSE89507	growth phase : late _ stationary	Gtype
GSE89507	growth phase : stationary	Gtype
GSE89507	growth time -LRB- hours -RRB- : 10	Gtype
GSE89507	growth time -LRB- hours -RRB- : 14	Gtype
GSE89507	growth time -LRB- hours -RRB- : 168	Gtype
GSE89507	growth time -LRB- hours -RRB- : 24	Gtype
GSE89507	growth time -LRB- hours -RRB- : 26	Gtype
GSE89507	growth time -LRB- hours -RRB- : 27	Gtype
GSE89507	growth time -LRB- hours -RRB- : 28	Gtype
GSE89507	growth time -LRB- hours -RRB- : 29	Gtype
GSE8965	growth time -LRB- hours -RRB- : 336	Gtype
GSE8965	growth time -LRB- hours -RRB- : 4	Gtype
GSE8965	growth time -LRB- hours -RRB- : 48	Gtype
GSE8965	growth time -LRB- hours -RRB- : 5	Gtype
GSE8965	growth time -LRB- hours -RRB- : 5.5	Gtype
GSE8965	growth time -LRB- hours -RRB- : 6	Gtype
GSE8965	growth time -LRB- hours -RRB- : 6.5	Gtype
GSE8965	growth time -LRB- hours -RRB- : 7	Gtype
GSE8965	growth time -LRB- hours -RRB- : 8	Gtype
GSE8965	growth time -LRB- hours -RRB- : 9	Gtype
GSE8965	late stationary culture	Gtype
GSE8965	mg +2 -LRB- levels -RRB- : baseMg	Gtype
GSE8965	mg +2 -LRB- levels -RRB- : highMg	Gtype
GSE8965	mg +2 -LRB- levels -RRB- : lowMg	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 0.005	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 0.01	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 0.02	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 0.04	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 0.08	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 0.8	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 200	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 400	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 50	Gtype
GSE8965	mg +2 -LRB- mm -RRB- : 8	Gtype
GSE90056	na +1 -LRB- mm -RRB- : 100	Gtype
GSE90056	na +1 -LRB- mm -RRB- : 200	Gtype
GSE90056	na +1 -LRB- mm -RRB- : 300	Gtype
GSE90056	na +1 -LRB- mm -RRB- : 5	Gtype
GSE90056	RNA-Seq 	O
GSE90056	stationary culture	Gtype
GSE90056	BW25113 	O
GSE90056	statistical significance using the MeV package	Gtype
GSE90056	EJW3 , BW25113 rpoC K370 _ A396dup	Gtype
GSE90056	EJW3 in M9 Replicate 1	Gtype
GSE90056	EYG1 in M9 Replicate 1	Gtype
GSE90056	genotype : rpoC K370 _ A396dup mutant	Gtype
GSE90056	genotype : Wild-type strain	Gtype
GSE90056	supplementation of 0.6 M NaCl	Supp
GSE90056	MG1655 	Supp
GSE90056	protocol : M9	Gtype
GSE90485	0.6 M NaCl	Supp
GSE90485	strain : BW25113	Gtype
GSE90485	strain : MG1655	Gtype
GSE90485	control strain	Phase
GSE90485	W3110 -LRB- lacI-deleted -RRB- strain harboring pKK223-3	Gtype
GSE90485	ATCC2 	Gtype
GSE90485	ATCC3 	Gtype
GSE90485	Broiler Fecal	Gtype
GSE90485	first strand cDNA was performed by the use of SuperScriptII and the second strand cDNA synthesis was done before end-pair and dA-tailing	Gtype
GSE90485	UCSC mm10	Gtype
GSE90485	Human 	Gtype
GSE90485	RNA-Seq 	O
GSE90485	RNA-Seq of E. coli were done using	O
GSE90485	blind and fit-only parameter in DE-Seq pakage	Gtype
GSE90485	strain : E. coli ATCC 25922	Gtype
GSE90743	biomass collected in the transition between exponential to stationary phase	Gtype
GSE90743	EHEC in LB Experiment 1 -LSB- RIBO-Seq -RSB-	Med
GSE90743	EHEC in LB Experiment 1	Med
GSE90743	-LSB- RNA-Seq -RSB-	Technique
GSE90743	EHEC in LB Experiment 2 -LSB- RIBO-Seq -RSB-	Med
GSE90743	EHEC in LB Experiment 2	Med
GSE90743	-LSB- RNA-Seq -RSB-	Technique
GSE90743	Escherichia coli O157 : H7 str . EDL933	Gtype
GSE90743	Library strategy : RIBO-seq	Gtype
GSE90743	OTHER 	O
GSE90743	RNA-Seq 	O
GSE90743	002655 -LRB- RCV = Ribosomal Coverage Value = RPKM-footprint over RPKM-transcription -RRB-	Gtype
GSE90743	RNAseq , gradient centrifugation = > RNase digestions = > Trizol = > gel extraction for RIBOseq	Gtype
GSE90743	Truseq Small RNA	Gtype
GSE90743	RNA-Seq 	O
GSE90743	strain : MG1655	Gtype
GSE90743	content : CoK12 _ LB.xlsx : Average expression	Gtype
GSE90743	content : CoT1E _ LB.xlsx : Average expression	Gtype
GSE90743	content : K12 _ LB.xlsx : Average of expression	Gtype
GSE90743	content : T1E _ LB.xlsx : Average of expression	Gtype
GSE90743	tab-delimited text files include the average of the expression	Gtype
GSE90743	bacterial cells	Med
GSE90743	base IGVtools -LRB- version 2.3.71 -RRB- , window size = 1	Gtype
GSE90743	genotype 	O
GSE90743	RNA-Seq 	O
GSE90743	strain : MG1693	Gtype
GSE90743	strain : SK4455	Gtype
GSE90743	content : In the . txt files the first column is the coordinate of the base	Gtype
GSE90743	time point : time0	Gtype
GSE90743	time point : time10	Gtype
GSE90743	time point : time20	Gtype
GSE90743	time point : time2 .5	Gtype
GSE90743	time point : time5	Gtype
GSE90743	time point : time7 .5	Gtype
GSE90743	20 μl of Fragmentation buffer -LSB- 65 mM Tris pH 8.3 ; 100 mM KCl ; 5 mM MgCl2 -RSB-	Gtype
GSE90743	end RNA-seq , Cytosolic fraction	Gtype
GSE90743	DMS-seq -LRB- Total RNA -RRB-	Gtype
GSE90743	250 µl of Buffer C -LSB- 0.5 % Tween-20 : 0.4 % NaDOC ; 2 M NaCl ; 10 mM EDTA -RSB-	Gtype
GSE90743	cut P1000 pipette tip , the whole sample was gently layered on the top of a 5-30 % w	Gtype
GSE90743	U00096 .2	Gversion
GSE90743	the rf-norm tool of the RNA Framework	Gtype
GSE90743	U00096 .2	Gversion
GSE90743	U00096 .2	Gversion
GSE90743	allow formation of the RNA Polymerase-DNA binary complex	Gtype
GSE90743	end RNA-seq	Technique
GSE90743	library strategy : DMS-seq	Gtype
GSE90743	library strategy : SPET-seq	Gtype
GSE9	molecule subtype : In vitro synthesized RNase P -LRB- rnpB -RRB- RNA	Gtype
GSE9	molecule subtype : Total RNA -LRB- Cytosolic fraction -RRB-	Gtype
GSE9	molecule subtype : Total RNA -LRB- Nucleoid fraction -RRB-	Gtype
GSE91001	OTHER 	Gtype
GSE91001	RNA-Seq 	Gtype
GSE91001	rnpB SPET-seq -LRB- in vitro -RRB-	Gtype
GSE91001	SPET-seq -LRB- Total RNA -RRB-	Gtype
GSE91001	substr : MG1655	Gtype
GSE9	MOPS Minimal Medium -LRB- NM3 -RRB-	Med
GSE9	ASM584v2 -LRB- Escherichia	Gtype
GSE9	differential expression -LRB- false discovery rate of < 0.01 , fold-change > 2 -RRB- using the baySeq package	Gtype
GSE92255	RNA-Seq 	O
GSE92255	CP009273 .1	Gtype
GSE92255	12h _ rep1	Gtype
GSE92255	12h _ rep2	Gtype
GSE92255	24h _ rep1	Gtype
GSE92255	24h _ rep2	Gtype
GSE92255	48h _ rep1	Gtype
GSE92255	48h _ rep2	Gtype
GSE92255	6h _ rep1	Gtype
GSE92255	6h _ rep2	Gtype
GSE92601	product : Butanol	Gtype
GSE92601	RNA-Seq 	O
GSE92601	strain : BW25113	Gtype
GSE92601	Excel file include FPKM	Gtype
GSE92601	WT _ 12h _ rep2	O
GSE92601	WT _ 48h _ rep1	O
GSE92601	WT _ 48h _ rep2	O
GSE92601	evolved 9 min rep6	Gtype
GSE92601	evolved 9 min rep7	Gtype
GSE92601	PMC3457771 -RRB- in place of wild-type sequence	Gtype
GSE92601	infection : T7	Gtype
GSE92601	RNA-Seq 	O
GSE92601	tab-delimitted text files contain TPM -LRB- transcripts	Gtype
GSE93125	t7 genotype : evolved , codon-deoptimized gene 10	Gtype
GSE93125	t7 genotype : wild-type gene 10	Gtype
GSE93125	t7 strain : evolved	Gtype
GSE93125	t7 strain : wild type	Gtype
GSE93125	time : 1 min post-infection	Gtype
GSE93125	time : 5 min post-infection	Gtype
GSE93125	time : 9 min post-infection	Gtype
GSE93125	WT 1 min rep7	Gtype
GSE93125	WT 9 min rep7	Gtype
GSE93125	WT 9 min rep8	Gtype
GSE93125	3XSCOTS cDNA 24 h post-infection	Gtype
GSE93125	3XSCOTS cDNA in RPMI medium	Gtype
GSE93125	3XSCOTS cDNA obtained 24 h post-infection	Gtype
GSE93125	EDL933 8h post-infection in THP-1 human cells	Gtype
GSE93125	EDL933 8h post THP-1 infection	Gtype
GSE93125	EDL933 cDNA 24 h post-infcetion of THP-1 human cells	Gtype
GSE93125	EDL933 cDNA obtained 24h post-infection of THP-1 human cells	Gtype
GSE93125	EDL933 genomic DNA	Gtype
GSE93125	EDL933 genomic DNA	Gtype
GSE93125	EDL933 genommic DNA	Gtype
GSE93506	EDL933 in RPMI medium	Gtype
GSE93506	EDL933 in THP-1 cells 8h post-infection	Gtype
GSE93506	Genomic DNA E. coli EDL933	Gtype
GSE93506	Genomic DNA from EDL933	Gtype
GSE93506	Genomic DNA of EDL933	Gtype
GSE93506	Reference genomic DNA	Gtype
GSE93506	REference genomic DNA	Gtype
GSE93506	T24 THP-1 infection , Microarray # 1 first replicate	Gtype
GSE93506	T24 THP-1 infection , Microarray # 2 first replicate	Gtype
GSE93506	T24 THP-1 infection , Microarray # 2 second replicate	Gtype
GSE93506	T2 THP-1 infection , Microarray # 2 first replicate	Gtype
GSE93506	T2 THP-1 infection , Microarray # 2 second replicate	Gtype
GSE93506	T8 THP-1 infection , Microarray # 2 first replicate	Gtype
GSE93506	T8 THP-1 infection , Microarray # 2 second replicate	Gtype
GSE9	exponential phase _ repl1	Gtype
GSE94117	E. coli CRP N strain _ acetate _ exponential phase _ repl2	Gtype
GSE94117	E. coli CRP N strain _ acetate _ stationary phase _ repl1	Gtype
GSE94117	E. coli CRP N strain _ acetate _ stationary phase _ repl2	Gtype
GSE94117	E. coli CRP N strain _ glucose _ exponential phase _ repl1	Gtype
GSE94117	E. coli CRP N strain _ glucose _ exponential phase _ repl2	Gtype
GSE94117	E. coli CRP N strain _ glucose _ stationary phase _ repl1	Gtype
GSE94117	E. coli CRP N strain _ glucose _ stationary phase _ repl2	Gtype
GSE94117	exponential phase _ repl1	Gtype
GSE94117	exponential phase _ repl2	Gtype
GSE94117	stationary phase _ repl1	Gtype
GSE94117	stationary phase _ repl2	Gtype
GSE94117	exponential phase _ repl1	Gtype
GSE94117	exponential phase _ repl2	Gtype
GSE94117	stationary phase _ repl1	Gtype
GSE94117	stationary phase _ repl2	Gtype
GSE94117	E. coli CRP R strain _ acetate _ exponential phase _ repl1	Gtype
GSE94117	E. coli CRP R strain _ acetate _ exponential phase _ repl2	Gtype
GSE94117	E. coli CRP R strain _ acetate _ stationary phase _ repl1	Gtype
GSE94117	E. coli CRP R strain _ acetate _ stationary phase _ repl2	Gtype
GSE94117	E. coli CRP R strain _ glucose _ exponential phase _ repl1	Gtype
GSE94117	E. coli CRP R strain _ glucose _ exponential phase _ repl2	Gtype
GSE94117	E. coli CRP R strain _ glucose _ stationary phase _ repl1	Gtype
GSE94117	E. coli CRP R strain _ glucose _ stationary phase _ repl2	Gtype
GSE94117	exponential phase _ repl1	Gtype
GSE94117	exponential phase _ repl2	Gtype
GSE94117	stationary phase _ repl1	Gtype
GSE94117	stationary phase _ repl2	Gtype
GSE94117	exponential phase _ repl1	Gtype
GSE94117	exponential phase _ repl2	Gtype
GSE94117	stationary phase _ repl1	Gtype
GSE94117	stationary phase _ repl2	Gtype
GSE94117	genotyp 	O
GSE94117	the manufacturer 's protocol . The amount of total RNA	Gtype
GSE94117	genotype 	Substrain
GSE94117	growth phase : Late exponential	Gtype
GSE94117	K100Q 	Gtype
GSE94117	K100Q rep 1	Gtype
GSE94117	K100Q rep 2	Gtype
GSE94117	K100R 	O
GSE94117	K100R rep 1	Gtype
GSE94117	K100R rep 2	Gtype
GSE94117	22 mM glucose	Supp
GSE94117	RNA-Seq 	Supp
GSE94117	rRNA depletion , fragmentation , reverse transcription , tagging , barcoding , limited cycle PCR -LRB- Illumina -RRB-	Gtype
GSE94117	ScriptSeq v2 Complete Kit -LRB- EpiCentre -RRB-	Gtype
GSE94117	content : Comma separated value files include log-fold	Gtype
GSE94117	GTF -- library type fr-secondstrand	Gtype
GSE94117	WT rep 1	Gtype
GSE94117	WT rep 2	Gtype
GSE94117	WT rep 3	Gtype
GSE94117	Dilution rate = 0.14	Gtype
GSE94117	0 % tannin _ # 2	Gtype
GSE94117	0 % tannin _ # 8	Gtype
GSE94117	Incubation temperature = 37C	Gtype
GSE94117	pH = 5.3	Gtype
GSE94117	pH = 5.7	Gtype
GSE94117	RNA-Seq 	O
GSE94117	strain : K12 MG1655	Gtype
GSE94117	0x58 replicate 2 state	Gtype
GSE94117	0x58 replicate 2 state 2 -LRB- IPTG +	Gtype
GSE94117	0x58 replicate 2 state 4 -LRB- IPTG +	Gtype
GSE94117	0x58 replicate 2 state 6 -LRB- IPTG +	Gtype
GSE94117	0x58 replicate 2 state 8 -LRB- IPTG +	Gtype
GSE94117	0x58 replicate 3 state 2 -LRB- IPTG +	Gtype
GSE94117	0x58 replicate 3 state 6 -LRB- IPTG +	Gtype
GSE94117	0x58 replicate 3 state 8 -LRB- IPTG +	Gtype
GSE94117	the htseq-count command of the HTSeq toolkit	Gtype
GSE94117	RNA-Seq 	O
GSE94117	strain : NEB 10-beta	Gtype
GSE94117	BW25113 sdiA mutant LB with 1 mM indole 7-h 30C biofilm cell	Gtype
GSE94117	BW25113 sdiA mutant LB with DMF 7-h 30C biofilm cell	Gtype
GSE94117	BW25113 tnaA Biofilm 100 uM indole 7h LB 30C	Gtype
GSE94117	BW25113 tnaA Biofilm 100 uM indole 7h LB 37C	Gtype
GSE94117	BW25113 tnaA Biofilm DMF 7h LB 37C	Gtype
GSE94117	BW25113 w	Phase
GSE94117	K-12 BW25113 wild type	Gtype
GSE94117	13 _ ESBL019 Coliform Repl 4	Gtype
GSE94117	15 _ ESBL019 Transition Repl 4	Gtype
GSE94117	16 _ ESBL019 Reverted Repl 4	Gtype
GSE94117	5 _ ESBL019 Coliform Repl 2	Gtype
GSE94117	75th percentile shift normalisation and baseline adjusted	Gtype
GSE94117	7 _ ESBL019 Transition Repl 2	Gtype
GSE94117	ESBL019 Coliform	Phase
GSE94117	ESBL019 Filamented	Gtype
GSE94117	ESBL019 Transition	Phase
GSE94117	morphology : Coliform	Gtype
GSE94117	morphology : Filamented	Gtype
GSE94117	strain : beta-lactamase -LRB- ESBL -RRB- - producing UPEC -LRB- ESBL019 -RRB-	Gtype
GSE94117	lexA 10 min after UV treatment , 25 ug total RNA , 2 ug pdN6	Gtype
GSE94117	lexA 20 min after UV treatment , 25 ug total RNA , 2 ug pdN6	Gtype
GSE94117	lexA 40 min after UV treatment , 25 ug total RNA , 2 ug pdN6	Gtype
GSE94342	lexA 5 min after UV treatment , 25 ug total RNA , 2 ug pdN6	Gtype
GSE94342	lexA 60 min after UV treatment , 25 ug total RNA , 2 ug pdN6	Gtype