"strain: MG1655"	"characteristics_ch1.1"
"transcription factor: Nac"	"characteristics_ch1.2"
"Basecalls performed using CASAVA version 1.8"	"data_processing.1"
"Reads were aligned to GenBank ID U00096.2"	"data_processing.2"
"Peak calling was done using SPAT"	"data_processing.3"
"R scripts (Bioconductor GenomicRanges) and custom scripts were used to calculate RPKMs. Fold-change was calculated as ratio of RPKMs after TF induction to control experiment."	"data_processing.4"
"Genome_build: U00096.2 (GenBank)"	"data_processing.5"
"Supplementary_files_format_and_content: .xlsx files contain peak region locations and gene expression value for ChIP-Seq and RNA-Seq respectively"	"data_processing.6"
"For chromatin immunoprecipitation, cells were fixed with formaldehyde and glycine and sheared via sonication. Sheared DNA from lysate was immunoprecipitated (IP) out using an anti-FLAG mAb (Sigma). DNA was washed with IPP150 buffer and purified via ProteinaseK digestion and Qiaquick PCR purification kit (Qiagen - Cat. No. 28106)."	"extract_protocol_ch1.1"
"Total RNA extraction was done using TRIzol reagent and DNAse digested. RNA purfication was carried out using Rneasy spin columns"	"extract_protocol_ch1.2"
"The appropriate protocols were performed using standard Illumina procedures"	"extract_protocol_ch1.3"
"Cells were grown in LB media with 1mM IPTG at 37 °C with shaking for 2 hours"	"growth_protocol_ch1.1"
"Escherichia coli K-12"	"organism_ch1.1"
"Culture cells"	"source_name_ch1.1"
"Nac_RNASeq"	"title.1"
"For total RNA extraction, cells were pelleted in 4 °C."	"treatment_protocol_ch1.1"
"RNA-Seq"	"library_strategy.1"
"strain: MG1655"	"characteristics_ch1.1"
"transcription factor: Nac"	"characteristics_ch1.2"
"Cells were grown in LB media with 1mM IPTG at 37 °C with shaking for 2 hours"	"growth_protocol_ch1.1"
"Escherichia coli K-12"	"organism_ch1.1"
"Culture cells"	"source_name_ch1.1"
"For total RNA extraction, cells were pelleted in 4 °C."	"treatment_protocol_ch1.1"