GSE86632-GSM2308201-GPL22407-PMID:.tsv
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"strain background: EDL933" "characteristics_ch1.1"
"genotype/variation: wild type" "characteristics_ch1.2"
"culture media: LB" "characteristics_ch1.3"
"GeneSpring GX v.13.1" "data_processing.1"
"The values below 0.01 were set to 0.01. The log2 ratio of the intensity of signal channel to that of control channel was calculated and was then normalized to each slide’s median intensity ratio. The default interpretation mode was set to‘log of ratio’. Each time point was then tested separately for statistical differences using ANOVA at 5% confidence level, in conjunction with Benjamini-Hochberg multiple testing correction." "data_processing.2"
"Bacterial RNA was purified with Qiagen RNeasy mini kit, and the samples with RNA Integrity Number (RIN) >9 were used for labeling" "extract_protocol_ch1.1"
"The overnight cultures of bacteria in LB broth were refreshed with the ratio of 1:100 into fresh LB broth, and incubated at 30℃ with continuous shaking until the absorbance at 590 nm reached 0.5 to 0.6." "growth_protocol_ch1.1"
"Escherichia coli O157:H7" "organism_ch1.1"
"O157:H7 EDL933 in LB" "source_name_ch1.1"
"EDL933_LB_I" "title.1"
"with/without 2.5 mM Fumaric acid" "treatment_protocol_ch1.1"
"strain background: EDL933" "characteristics_ch1.1"
"genotype/variation: wild type" "characteristics_ch1.2"
"culture media: LB" "characteristics_ch1.3"
"The overnight cultures of bacteria in LB broth were refreshed with the ratio of 1:100 into fresh LB broth, and incubated at 30℃ with continuous shaking until the absorbance at 590 nm reached 0.5 to 0.6." "growth_protocol_ch1.1"
"Escherichia coli O157:H7" "organism_ch1.1"
"O157:H7 EDL933 in LB" "source_name_ch1.1"
"with/without 2.5 mM Fumaric acid" "treatment_protocol_ch1.1"