"strain: MG1655"	"characteristics_ch1.1"
"strain: MG1655"	"characteristics_ch2.1"
"Raw fluorescence intensity data were normalized in R (http://cran.r-project.org/) using the Limma (Bioconductor) package"	"data_processing.1"
"Total RNA samples were purified using the Qiagen RNeasy kit (Chatsworth, CA) according to the manufacturer’s protocol."	"extract_protocol_ch1.1"
"Total RNA samples were purified using the Qiagen RNeasy kit (Chatsworth, CA) according to the manufacturer’s protocol."	"extract_protocol_ch2.1"
"Overnight cultures were resuspended in fresh medium and TMP was added when the optical density (O.D. 600 nm) of the culture reached 0.3-0.4."	"growth_protocol_ch1.1"
"Overnight cultures were resuspended in fresh medium and TMP was added when the optical density (O.D. 600 nm) of the culture reached 0.3-0.4."	"growth_protocol_ch2.1"
"Escherichia coli"	"organism_ch1.1"
"Escherichia coli"	"organism_ch2.1"
"E. coli MG1655 120 min after TMP+glycine+methionine treatment in M9 media"	"source_name_ch1.1"
"E. coli MG1655 mid-log phase in M9 media"	"source_name_ch2.1"
"M9TMP_AA_120min"	"title.1"
"Time-point samples were taken every 15-30 minutes from 15 minutes to 2 hours post treatment."	"treatment_protocol_ch1.1"
"Time-point samples were taken every 15-30 minutes from 15 minutes to 2 hours post treatment."	"treatment_protocol_ch2.1"
"strain: MG1655"	"characteristics_ch1.1"
"strain: MG1655"	"characteristics_ch2.1"
"Overnight cultures were resuspended in fresh medium and TMP was added when the optical density (O.D. 600 nm) of the culture reached 0.3-0.4."	"growth_protocol_ch1.1"
"Overnight cultures were resuspended in fresh medium and TMP was added when the optical density (O.D. 600 nm) of the culture reached 0.3-0.4."	"growth_protocol_ch2.1"
"Escherichia coli"	"organism_ch1.1"
"Escherichia coli"	"organism_ch2.1"
"E. coli MG1655 120 min after TMP+glycine+methionine treatment in M9 media"	"source_name_ch1.1"
"E. coli MG1655 mid-log phase in M9 media"	"source_name_ch2.1"
"Time-point samples were taken every 15-30 minutes from 15 minutes to 2 hours post treatment."	"treatment_protocol_ch1.1"
"Time-point samples were taken every 15-30 minutes from 15 minutes to 2 hours post treatment."	"treatment_protocol_ch2.1"