"growth stage: log phase"	"characteristics_ch1.1"
"strain: MG1655 delta lac"	"characteristics_ch1.2"
"treatment: No treatment"	"characteristics_ch1.3"
"growth stage: log phase"	"characteristics_ch2.1"
"strain: MG1655 delta lac + MG1655 delta lac delta dksA"	"characteristics_ch2.2"
"treatment: Pooled RNA from mixture of the same amount of wt, wt+SHX, dksA, dksA+SHX RNA samples"	"characteristics_ch2.3"
"GenePix Pro (v 6.1) was used for background subtraction and normalization."	"data_processing.1"
"RNA was extracted using QIAGEN RNeasy Mini Kit following manufacturer's instructions."	"extract_protocol_ch1.1"
"RNA was extracted using QIAGEN RNeasy Mini Kit following manufacturer's instructions."	"extract_protocol_ch2.1"
"Cells were grown in M9 medium supplemented with 0.2% glucose and 0.4% casamino acid at 37℃"	"growth_protocol_ch1.1"
"Cells were grown in M9 medium supplemented with 0.2% glucose and 0.4% casamino acid at 37℃"	"growth_protocol_ch2.1"
"Escherichia coli str. K-12 substr. MG1655"	"organism_ch1.1"
"Escherichia coli str. K-12 substr. MG1655"	"organism_ch2.1"
"Wild-type Cells"	"source_name_ch1.1"
"pooled reference RNA"	"source_name_ch2.1"
"Wild-type Cells Replicate 2"	"title.1"
"At OD600~0.3, serine hydroxamate was added to a final concentration of 0.5mg/ml, cells were collected 40 minutes later."	"treatment_protocol_ch1.1"
"At OD600~0.3, serine hydroxamate was added to a final concentration of 0.5mg/ml, cells were collected 40 minutes later."	"treatment_protocol_ch2.1"
"growth stage: log phase"	"characteristics_ch1.1"
"strain: MG1655 delta lac"	"characteristics_ch1.2"
"treatment: No treatment"	"characteristics_ch1.3"
"growth stage: log phase"	"characteristics_ch2.1"
"strain: MG1655 delta lac + MG1655 delta lac delta dksA"	"characteristics_ch2.2"
"treatment: Pooled RNA from mixture of the same amount of wt, wt+SHX, dksA, dksA+SHX RNA samples"	"characteristics_ch2.3"
"Cells were grown in M9 medium supplemented with 0.2% glucose and 0.4% casamino acid at 37℃"	"growth_protocol_ch1.1"
"Cells were grown in M9 medium supplemented with 0.2% glucose and 0.4% casamino acid at 37℃"	"growth_protocol_ch2.1"
"Escherichia coli str. K-12 substr. MG1655"	"organism_ch1.1"
"Escherichia coli str. K-12 substr. MG1655"	"organism_ch2.1"
"Wild-type Cells"	"source_name_ch1.1"
"pooled reference RNA"	"source_name_ch2.1"
"At OD600~0.3, serine hydroxamate was added to a final concentration of 0.5mg/ml, cells were collected 40 minutes later."	"treatment_protocol_ch1.1"
"At OD600~0.3, serine hydroxamate was added to a final concentration of 0.5mg/ml, cells were collected 40 minutes later."	"treatment_protocol_ch2.1"