"strain: Escherichia coli K12 MG1655"	"characteristics_ch1.1"
"specific growth rate: 0.47 h-1"	"characteristics_ch1.2"
"strain: Escherichia coli K12 MG1655"	"characteristics_ch2.1"
"specific growth rate: 0.3 h-1"	"characteristics_ch2.2"
"Spot intensities and corresponding background signals were quantified with Genepix Pro (version 6; Axon Instruments [http://www.moleculardevices.com/pages/software/gn_genepix_pro.html]). Spots which had signal-to-noise ratio less than three were filtered. Further analysis was carried out in R environment (version 2.6.1; [http://www.r-project.org/]) using KTH package (KTH Microarray Center; [http://www.biotech.kth.se/molbio/microarray/dataanalysis/index.html]). Flagged spots and background were extracted before “printTipLoess” normalization."	"data_processing.1"
"Total RNA was extracted using RNeasy Mini Kit (QIAGEN, Valencia, CA) and the genomic DNA was removed using RNase-Free DNase Set (QIAGEN)."	"extract_protocol_ch1.1"
"Total RNA was extracted using RNeasy Mini Kit (QIAGEN, Valencia, CA) and the genomic DNA was removed using RNase-Free DNase Set (QIAGEN)."	"extract_protocol_ch2.1"
"Escherichia coli K12 MG1655 were grown in M9 minimal medium with 10 g/L glucose. The bacteria were cultivated in a chemostat at specific growth rate 0.3 h-1. After reaching steady state, dilution rate was increased with constant rate (0.01 h-2) and the samples were acquired when specific growth rate reached 0.47 h-1."	"growth_protocol_ch1.1"
"Escherichia coli K12 MG1655 were grown in M9 minimal medium with 10 g/L glucose. The bacteria were cultivated in a chemostat at specific growth rate 0.3 h-1 and the samples were acquired after culture reached steady state."	"growth_protocol_ch2.1"
"Escherichia coli"	"organism_ch1.1"
"Escherichia coli"	"organism_ch2.1"
"Specific growth rate 0.47 h-1"	"source_name_ch1.1"
"Specific growth rate 0.3 h-1"	"source_name_ch2.1"
"A-stat gene expression changes 0.3/0.47 h-1 dye-flip repl.3"	"title.1"
"strain: Escherichia coli K12 MG1655"	"characteristics_ch1.1"
"specific growth rate: 0.47 h-1"	"characteristics_ch1.2"
"strain: Escherichia coli K12 MG1655"	"characteristics_ch2.1"
"specific growth rate: 0.3 h-1"	"characteristics_ch2.2"
"Escherichia coli K12 MG1655 were grown in M9 minimal medium with 10 g/L glucose. The bacteria were cultivated in a chemostat at specific growth rate 0.3 h-1. After reaching steady state, dilution rate was increased with constant rate (0.01 h-2) and the samples were acquired when specific growth rate reached 0.47 h-1."	"growth_protocol_ch1.1"
"Escherichia coli K12 MG1655 were grown in M9 minimal medium with 10 g/L glucose. The bacteria were cultivated in a chemostat at specific growth rate 0.3 h-1 and the samples were acquired after culture reached steady state."	"growth_protocol_ch2.1"
"Escherichia coli"	"organism_ch1.1"
"Escherichia coli"	"organism_ch2.1"
"Specific growth rate 0.47 h-1"	"source_name_ch1.1"
"Specific growth rate 0.3 h-1"	"source_name_ch2.1"