GSE106628-GSM2844067-GPL13359-PMID:29138484.tsv
1.93 KB
"strain: MG1655" "characteristics_ch1.1"
"ph: 5.6" "characteristics_ch1.2"
"sucrose status: no sucrose" "characteristics_ch1.3"
"genotype: Wildtype" "characteristics_ch1.4"
"Raw signal data were extracted from the TIFF image with Agilent Feature Extraction Software (V10.7.1.1). The data analysis is done using a microarray specialized analysis software, Genespring GX. In this experiment, the microarray type used is a slide having 8 arrays with 60 thousand features per array. The exact number of features in the each array, inclusive of control probes, is 10,751 features. The microarray has a specific Agilent identifier called an AMADID which is used to identify what kind of array is being used; in this experiment the AMADID used is the design ID 020097." "data_processing.1"
"Supplementary files contain the following: Raw Signal Values: The term “raw” signal values refer to the linear data after thresholding and summarization Summarization is performed by computing the geometric mean. Raw data filtered on Expression (20.0 - 343943.344)• Normalized Signal Values: ``Normalized'' value is the value generated after log transformation and normalization (Shift to 75 percentile) and baseline transformation." "data_processing.2"
"The total RNA was isolated using an RNeasy mini kit (Qiagen)." "extract_protocol_ch1.1"
"E. coli strains was grown in MgM media at pH 5.6, 7.2 and 7.2 with 15% (w/v) sucrose to O.D ~0.6." "growth_protocol_ch1.1"
"Escherichia coli str. K-12 substr. MG1655" "organism_ch1.1"
"WT pH 5.6 C" "source_name_ch1.1"
"E.coli_WT pH 5.6 C" "title.1"
"strain: MG1655" "characteristics_ch1.1"
"ph: 5.6" "characteristics_ch1.2"
"sucrose status: no sucrose" "characteristics_ch1.3"
"genotype: Wildtype" "characteristics_ch1.4"
"E. coli strains was grown in MgM media at pH 5.6, 7.2 and 7.2 with 15% (w/v) sucrose to O.D ~0.6." "growth_protocol_ch1.1"
"Escherichia coli str. K-12 substr. MG1655" "organism_ch1.1"
"WT pH 5.6 C" "source_name_ch1.1"