report_Run8_v10.txt 37.5 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.13638506422514615, 'c2': 0.02423542955017791}
best CV score:0.841060076118789
model size: 0.13M

Flat F1: 0.8161481144162542
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      1.000     0.800     0.889        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.595     0.568     0.581        88
       Anti      0.929     1.000     0.963        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.910     0.782     0.841        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.864     0.838     0.851       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.857     0.783     0.816       484


Top likely transitions:
Temp   -> Temp    5.620431
Anti   -> Anti    5.305893
Med    -> Med     5.243844
OD     -> OD      5.000616
Gversion -> Gversion 4.673733
Gtype  -> Gtype   4.424339
Supp   -> Supp    4.334229
Phase  -> Phase   4.242046
Technique -> Technique 3.997656
O      -> O       3.823839
Air    -> Air     3.168371
pH     -> pH      3.158158
Agit   -> Agit    2.395519
Substrain -> Gtype   1.802115
O      -> Technique 0.751107
Gtype  -> Supp    0.445961
Med    -> O       0.314631
O      -> Gtype   0.270712
Temp   -> O       0.246695
Technique -> Air     0.194860
O      -> Supp    0.135931
Gtype  -> pH      0.065351
O      -> Phase   0.052333
O      -> pH      0.008366
Air    -> O       0.003610
Supp   -> Air     -0.000028
Air    -> Agit    -0.000865
Agit   -> Air     -0.005008
Phase  -> O       -0.014722
Technique -> Gtype   -0.021691
Anti   -> O       -0.025636
Air    -> Med     -0.088291
Anti   -> Supp    -0.097706
Phase  -> OD      -0.103373
OD     -> O       -0.113670
Gtype  -> Temp    -0.141574
O      -> OD      -0.147221
Supp   -> O       -0.159930
O      -> Anti    -0.161234
Supp   -> Gtype   -0.185504
Gtype  -> Med     -0.352214
Anti   -> Gtype   -0.368460
OD     -> Air     -0.428468
O      -> Med     -0.456170
Technique -> O       -0.577224
Supp   -> Med     -0.692379
Temp   -> Med     -0.720782
Air    -> Supp    -0.785228
Technique -> pH      -1.039120
Gtype  -> O       -1.057055
Substrain -> O       -1.118173
Med    -> Supp    -1.629804
O      -> Air     -1.656809


Top unlikely transitions:
Temp   -> Temp    5.620431
Anti   -> Anti    5.305893
Med    -> Med     5.243844
OD     -> OD      5.000616
Gversion -> Gversion 4.673733
Gtype  -> Gtype   4.424339
Supp   -> Supp    4.334229
Phase  -> Phase   4.242046
Technique -> Technique 3.997656
O      -> O       3.823839
Air    -> Air     3.168371
pH     -> pH      3.158158
Agit   -> Agit    2.395519
Substrain -> Gtype   1.802115
O      -> Technique 0.751107
Gtype  -> Supp    0.445961
Med    -> O       0.314631
O      -> Gtype   0.270712
Temp   -> O       0.246695
Technique -> Air     0.194860
O      -> Supp    0.135931
Gtype  -> pH      0.065351
O      -> Phase   0.052333
O      -> pH      0.008366
Air    -> O       0.003610
Supp   -> Air     -0.000028
Air    -> Agit    -0.000865
Agit   -> Air     -0.005008
Phase  -> O       -0.014722
Technique -> Gtype   -0.021691
Anti   -> O       -0.025636
Air    -> Med     -0.088291
Anti   -> Supp    -0.097706
Phase  -> OD      -0.103373
OD     -> O       -0.113670
Gtype  -> Temp    -0.141574
O      -> OD      -0.147221
Supp   -> O       -0.159930
O      -> Anti    -0.161234
Supp   -> Gtype   -0.185504
Gtype  -> Med     -0.352214
Anti   -> Gtype   -0.368460
OD     -> Air     -0.428468
O      -> Med     -0.456170
Technique -> O       -0.577224
Supp   -> Med     -0.692379
Temp   -> Med     -0.720782
Air    -> Supp    -0.785228
Technique -> pH      -1.039120
Gtype  -> O       -1.057055
Substrain -> O       -1.118173
Med    -> Supp    -1.629804
O      -> Air     -1.656809


Top positive:
5.796668 Anti     b'-2:lemma:antibody'
5.268353 O        b'-2:lemma:_'
4.022703 Air      b'lemma:anaerobic'
3.966902 Gtype    b'hGreek'
3.902393 O        b'lemma:_'
3.902393 O        b'word:_'
3.830700 Air      b'word:Aerobic'
3.830016 Phase    b'-2:lemma:phase'
3.390046 Gtype    b'-2:lemma:genotype/variation'
3.272151 Air      b'word:Anaerobic'
3.262142 Supp     b'-2:lemma:shake'
3.236708 Gtype    b'word:WT'
3.144810 Gtype    b'lemma:type'
3.144810 Gtype    b'word:type'
3.142715 Med      b'word:LB'
3.076991 Supp     b'lemma:nh4cl'
3.032568 O        b'postag:VBG'
2.922552 O        b'lemma:1'
2.922552 O        b'word:1'
2.918257 O        b'postag::'
2.883196 Technique b'+2:lemma:ph5'
2.852127 Technique b'word:ChIPSeq'
2.808864 O        b'word:Cra'
2.793373 O        b'+2:lemma:\xc2\xb0c'
2.765804 O        b'lemma:-'
2.765804 O        b'word:-'
2.764834 Supp     b'lemma:pq'
2.764834 Supp     b'word:PQ'
2.743824 Gtype    b'lemma:wt'
2.661441 O        b'lemma:2'
2.661441 O        b'word:2'
2.639213 Supp     b'-1:word:Cra'
2.546899 O        b'-1:lemma:lb'
2.477758 O        b'lemma:.'
2.477758 O        b'postag:.'
2.477758 O        b'word:.'
2.460520 O        b'lemma:3'
2.460520 O        b'word:3'
2.454772 Gtype    b'-1:lemma:\xe2\x88\x86'
2.454772 Gtype    b'-1:word:\xe2\x88\x86'
2.452292 Gtype    b'-2:lemma:genotype'
2.430279 Technique b'lemma:chipseq'
2.417213 O        b'postag:IN'
2.367844 Technique b'word:ChIP-exo'
2.352613 Supp     b'lemma:arginine'
2.336683 Med      b'lemma:MOPS'
2.336683 Med      b'word:MOPS'
2.321750 O        b'-1:postag:NNS'
2.293392 Technique b'word:ChIP-Seq'
2.284640 Gtype    b'-2:lemma:affyexp'
2.276723 Strain   b'lemma:k-12'
2.276723 Strain   b'word:K-12'
2.255134 Supp     b'lemma:Iron'
2.255134 Supp     b'word:Iron'
2.255134 Supp     b'+1:word:Deficient'
2.255134 Supp     b'-2:lemma:Anaerobic'
2.233134 O        b'-2:lemma:flagtag'
2.208577 O        b'+2:lemma:crp'
2.187477 O        b'-2:lemma:medium'
2.146657 O        b'postag:VBN'
2.132806 Substrain b'-2:lemma:substr'
2.127315 Supp     b'lemma:no3'
2.127315 Supp     b'word:NO3'
2.091469 Air      b'postag:RB'
2.063158 Air      b'lemma:aerobic'
2.027661 Gtype    b'+2:lemma:glucose'
2.016361 Gtype    b'-2:lemma:delta'
1.984659 O        b'lemma:at'
1.978848 O        b'-2:lemma:myc'
1.967292 Supp     b'lemma:2h'
1.967292 Supp     b'-1:lemma:additional'
1.967292 Supp     b'word:2h'
1.967292 Supp     b'-1:word:additional'
1.966905 O        b'lemma:rpob'
1.966905 O        b'word:RpoB'
1.962933 O        b'lemma:b'
1.962933 O        b'word:B'
1.947488 Gtype    b'+1:lemma:type'
1.947488 Gtype    b'+1:word:type'
1.944259 Med      b'+2:lemma:b2'
1.935864 O        b'lemma:with'
1.935864 O        b'word:with'
1.933244 O        b'word:A'
1.917280 Gtype    b'lemma:\xe2\x88\x86'
1.917280 Gtype    b'word:\xe2\x88\x86'
1.910010 Supp     b'lemma:glucose'
1.910010 Supp     b'word:glucose'
1.897418 Phase    b'lemma:mid-log'
1.897418 Phase    b'word:mid-log'
1.891107 O        b'-1:word:tag'
1.890237 Gversion b'word:ChIP-Seq'
1.880175 Technique b'lemma:rna-seq'
1.877505 Supp     b'+1:lemma:\xc2\xb5m'
1.877505 Supp     b'+1:word:\xc2\xb5M'
1.864403 O        b'-1:lemma:tag'
1.859336 Gversion b'lemma:chip-seq'
1.858017 O        b'postag:CC'
1.841339 pH       b'+1:postag:CD'
1.790289 O        b'-1:word:Anaerobic'
1.788876 Supp     b'-2:lemma:media'
1.783890 O        b'+1:postag:RB'
1.770871 O        b'lemma:chip'
1.748358 Med      b'+2:postag:CC'
1.742974 Air      b'-2:lemma:IP'
1.735443 O        b'word:OmpR'
1.733809 Air      b'lemma:aerobically'
1.733809 Air      b'word:aerobically'
1.714336 O        b'-1:word:Aerobic'
1.712068 Air      b'-1:lemma:ChIP-Seq'
1.712068 Air      b'-1:word:ChIP-Seq'
1.711603 Gtype    b'lemma:pk4854'
1.711603 Gtype    b'word:PK4854'
1.698861 Supp     b'+2:lemma:iptg'
1.626749 Supp     b'-1:postag:IN'
1.621782 Substrain b'lemma:mg1655'
1.621782 Substrain b'word:MG1655'
1.607518 O        b'lemma::'
1.607518 O        b'word::'
1.605445 Air      b'+2:postag:CD'
1.601695 Gtype    b'postag:JJ'
1.599899 Temp     b'+1:lemma:\xc2\xb0c'
1.599899 Temp     b'+1:word:\xc2\xb0C'
1.595451 Supp     b'+2:lemma:rifampicin'
1.570229 O        b'+1:lemma:wt'
1.566768 Phase    b'postag:NN'
1.566569 Air      b'postag:JJ'
1.566219 Supp     b'lemma:acetate'
1.566219 Supp     b'word:acetate'
1.561076 Technique b'hUpper'
1.551910 O        b'+1:word:WT'
1.546723 Supp     b'-1:lemma:Cra'
1.542256 Supp     b'-2:lemma:induce'
1.539720 O        b'+1:word:ChIP-Seq'
1.538692 O        b'lemma:Cra'
1.535800 Med      b'+2:lemma:b1'
1.528136 Air      b'-1:lemma:-'
1.528136 Air      b'-1:word:-'
1.503837 O        b'-2:lemma:overnight'
1.499485 Air      b'word:anaerobic'
1.487710 Temp     b'-1:word:sample'
1.473133 pH       b'lemma:ph5'
1.473133 pH       b'+1:lemma:.5'
1.473133 pH       b'word:pH5'
1.473133 pH       b'+1:word:.5'
1.462626 Supp     b'lemma:rifampicin'
1.462626 Supp     b'word:rifampicin'
1.460702 O        b'lemma:rep2'
1.460702 O        b'word:rep2'
1.460702 O        b'lemma:rep1'
1.460702 O        b'word:rep1'
1.459383 Technique b'lemma:rnaseq'
1.459383 Technique b'word:RNASeq'
1.458911 Med      b'lemma:media'
1.458911 Med      b'word:media'
1.456114 Supp     b'lemma:iptg'
1.456114 Supp     b'word:IPTG'
1.453985 Temp     b'-1:lemma:sample'
1.442951 Gtype    b'lemma:dfnr'
1.442951 Gtype    b'word:dFNR'
1.438983 O        b'-1:lemma:0.3'
1.438983 O        b'-1:word:0.3'
1.427860 Supp     b'-2:lemma:for'
1.416601 O        b'-1:word:ChIP-exo'
1.412957 Supp     b'+1:lemma:1'
1.412957 Supp     b'+1:word:1'
1.396459 Supp     b'lemma:Adenine'
1.396459 Supp     b'word:Adenine'
1.393363 Supp     b'+1:word:was'
1.367275 Phase    b'-2:lemma:until'
1.366612 O        b'+1:postag:NNP'
1.357951 O        b'lemma:culture'
1.356620 O        b'+1:lemma:pq'
1.356620 O        b'+1:word:PQ'
1.356102 Technique b'-1:lemma:_'
1.356102 Technique b'-1:word:_'
1.349897 Supp     b'lemma:Leu'
1.349897 Supp     b'word:Leu'
1.349897 Supp     b'-2:lemma:Lrp'
1.348267 Gversion b'-2:lemma:build'
1.342119 O        b'lemma:harbor'
1.342119 O        b'word:harboring'
1.340699 O        b'-2:lemma:min'
1.339176 Supp     b'-2:lemma:purr'
1.335956 Supp     b'-2:lemma:argr'
1.316028 Supp     b'lemma:nacl'
1.316028 Supp     b'word:NaCl'
1.300877 Med      b'lemma:LB'
1.296453 O        b'-1:lemma:type'
1.296453 O        b'-1:word:type'
1.296254 O        b'word:Lrp'
1.284016 OD       b'lemma:0.3'
1.284016 OD       b'word:0.3'
1.283414 Gtype    b'hUpper'
1.282902 Temp     b'-1:lemma:\xcf\x8332'
1.282902 Temp     b'-1:word:\xcf\x8332'
1.271501 Technique b'-2:lemma:wt'
1.264964 Med      b'+1:lemma:0.4'
1.264964 Med      b'+1:word:0.4'
1.259036 O        b'+1:lemma:fnr-8myc'
1.259036 O        b'+1:word:Fnr-8myc'
1.255351 Supp     b'+2:lemma:feso4'
1.254405 Supp     b'-1:lemma:+'
1.254405 Supp     b'-1:word:+'
1.254401 Temp     b'-2:lemma:\xcf\x8332'
1.250883 Supp     b'postag:NNP'
1.229223 Air      b'-2:lemma:fnr'
1.219197 Supp     b'+1:lemma:2'
1.219197 Supp     b'+1:word:2'
1.210409 O        b'+2:lemma:constant'
1.202840 Temp     b'-2:lemma:keep'
1.198571 Temp     b'lemma:43'
1.198571 Temp     b'word:43'
1.193227 O        b'lemma:a'
1.184817 Vess     b'lemma:flask'
1.184817 Vess     b'-1:lemma:warm'
1.184817 Vess     b'word:flask'
1.184817 Vess     b'-1:word:warmed'
1.184817 Vess     b'-2:lemma:pre'
1.184817 Vess     b'+2:lemma:43'
1.184555 Phase    b'+2:lemma:o.d.'
1.178463 Technique b'lemma:ChIP-exo'
1.166819 Technique b'+1:lemma:chip-exo'
1.166425 O        b'+1:lemma:od600'
1.166425 O        b'+1:word:OD600'
1.166172 O        b'-2:lemma:='
1.165908 O        b'lemma:genotype/variation'
1.165908 O        b'word:genotype/variation'
1.151372 O        b'-2:lemma:co2'
1.149133 O        b'lemma:for'
1.147751 Air      b'-1:lemma:co2'
1.147751 Air      b'-1:word:CO2'
1.146553 O        b'+1:word:were'
1.144726 Supp     b'-1:word:OmpR'
1.137143 Gversion b'-2:postag:VB'
1.122309 Med      b'lemma:m63'
1.122309 Med      b'word:M63'
1.120625 O        b'symb'
1.118382 O        b'lemma:chip-fnr'
1.118382 O        b'word:chip-Fnr'
1.118382 O        b'+2:lemma:fnr8myc'
1.115590 Temp     b'lemma:\xc2\xb0c'
1.115590 Temp     b'word:\xc2\xb0C'
1.112543 Temp     b'lemma:37'
1.112543 Temp     b'word:37'
1.110638 Substrain b'lemma:mg1655star'
1.110638 Substrain b'word:MG1655star'
1.105394 Air      b'lemma:anaeroibc'
1.105394 Air      b'word:Anaeroibc'
1.098275 O        b'+2:postag:JJ'
1.090827 O        b'-1:lemma:glucose'
1.090827 O        b'-1:word:glucose'
1.076896 Gtype    b'hLower'
1.072394 OD       b'postag:CD'
1.059681 Gversion b'lemma:asm584v2'
1.059681 Gversion b'word:ASM584v2'
1.057774 Gtype    b'+1:postag::'
1.056820 Substrain b'+1:lemma:phtpg'
1.056820 Substrain b'+1:word:PhtpG'
1.050092 O        b'-1:lemma:ChIP-exo'
1.047187 Supp     b'-1:postag:CD'
1.046943 O        b'+2:lemma:aerobically'
1.044636 OD       b'+2:lemma:0.3'
1.044280 Supp     b'-2:postag:VBG'
1.043701 O        b'word:C'
1.043575 Anti     b'-2:lemma:polymerase'
1.043298 O        b'lemma:\xcf\x8332'
1.043298 O        b'word:\xcf\x8332'
1.030026 OD       b'+1:lemma:of'
1.030026 OD       b'+1:word:of'
1.029474 Supp     b'-2:lemma:supplement'
1.024978 Gtype    b'-1:lemma:nsrr'
1.024978 Gtype    b'+1:lemma:flagtag'
1.024978 Gtype    b'-1:word:NsrR'
1.024978 Gtype    b'+1:word:Flagtag'
1.023169 Gtype    b'+2:postag::'
1.021061 Gtype    b'lemma:\xce\xb4fur'
1.021061 Gtype    b'word:\xce\x94fur'
1.020874 Med      b'+2:lemma:+'
1.020431 Supp     b'lemma:fructose'
1.020431 Supp     b'word:fructose'
1.013689 Temp     b'-1:lemma:43'
1.013689 Temp     b'-1:word:43'
1.005320 Agit     b'lemma:rpm'
1.005320 Agit     b'word:rpm'
1.002062 pH       b'lemma:5.5'
1.002062 pH       b'word:5.5'
0.997644 O        b'-1:lemma:mg1655'
0.997644 O        b'-1:word:MG1655'
0.997509 Agit     b'-1:lemma:250'
0.997509 Agit     b'-1:word:250'
0.997036 Technique b'lemma:ChIP-Seq'
0.994000 Supp     b'lemma:Fe'
0.994000 Supp     b'word:Fe'
0.992911 Technique b'-1:lemma:IP'
0.992911 Technique b'-1:word:IP'
0.990993 Supp     b'-1:lemma:with'
0.990993 Supp     b'-1:word:with'
0.990459 Technique b'-2:lemma:Fur'
0.990322 Phase    b'lemma:stationary'
0.990322 Phase    b'word:stationary'
0.990322 Phase    b'lemma:exponential'
0.990322 Phase    b'word:exponential'
0.988288 Gversion b'lemma:000913'
0.988288 Gversion b'word:000913'
0.988288 Gversion b'-2:lemma:nc'
0.987395 Anti     b'+2:lemma:antibody'
0.986326 O        b'lemma:-lrb-'
0.986326 O        b'word:-LRB-'
0.983326 Substrain b'+2:lemma::'
0.982127 O        b'isLower'
0.981767 O        b'-2:lemma:ChIP-Seq'
0.981550 Supp     b'-2:lemma:20'
0.978756 Supp     b'lemma:dpd'
0.978756 Supp     b'word:DPD'
0.977619 O        b'+1:lemma:coli'
0.977619 O        b'+1:word:coli'
0.975291 Gversion b'lemma:u00096'
0.975291 Gversion b'+1:lemma:.2'
0.975291 Gversion b'word:U00096'
0.975291 Gversion b'+1:word:.2'
0.973339 O        b'-1:lemma:\xc2\xb0c'
0.973339 O        b'-1:word:\xc2\xb0C'
0.972999 OD       b'+1:postag:IN'
0.972686 Technique b'-1:lemma:chip-exo'
0.972430 O        b'+1:lemma:mid-log'
0.972430 O        b'+1:word:mid-log'
0.965560 O        b'lemma:purr'
0.965560 O        b'word:PurR'
0.958387 O        b'lemma:CEL'
0.958387 O        b'word:CEL'
0.957692 OD       b'lemma:od450'
0.957692 OD       b'word:OD450'
0.957692 OD       b'-1:word:At'
0.957561 Supp     b'-1:lemma:vol'
0.957561 Supp     b'-1:word:vol'
0.957561 Supp     b'-2:lemma:1/100'
0.957561 Supp     b'+2:lemma:1m'
0.952641 O        b'-2:lemma:37'
0.945982 Med      b'-1:word:ml'
0.943856 Med      b'-1:lemma:ml'
0.941127 O        b'+1:lemma:rifampicin'
0.941127 O        b'+1:word:rifampicin'
0.935533 Anti     b'+1:lemma:antibody'
0.935533 Anti     b'+1:word:antibody'
0.933205 Temp     b'-1:lemma:37'
0.933205 Temp     b'-1:word:37'
0.931562 Supp     b'-1:lemma:ompr'
0.928950 OD       b'-1:postag:IN'
0.925592 O        b'word:for'
0.924964 Technique b'-1:lemma:input'
0.924964 Technique b'-1:word:Input'
0.923737 Gtype    b'-2:lemma:-rcb-'
0.923571 Air      b'+2:lemma:%'
0.922172 Vess     b'-1:postag:VBN'
0.920659 Gversion b'lemma:.2'
0.920659 Gversion b'-1:lemma:u00096'
0.920659 Gversion b'word:.2'
0.920659 Gversion b'-1:word:U00096'
0.920174 Supp     b'symb'
0.918013 Supp     b'-1:lemma:_'
0.918013 Supp     b'-1:word:_'
0.916527 Gtype    b'lemma:wild-type'
0.915945 Gtype    b'lemma:deltaseqa'
0.915945 Gtype    b'-1:lemma:old'
0.915945 Gtype    b'word:deltaSeqA'
0.915945 Gtype    b'-1:word:old'
0.915945 Gtype    b'-2:lemma:seqa'
0.912473 Med      b'lemma:medium'
0.912473 Med      b'word:medium'
0.910527 Supp     b'-2:lemma:pahse'
0.909559 Agit     b'+2:lemma:at'
0.908484 Supp     b'-1:postag:CC'
0.891707 Temp     b'-2:postag:VBD'
0.890619 Gtype    b'lemma:arca8myc'
0.890619 Gtype    b'word:ArcA8myc'
0.890619 Gtype    b'-2:lemma:chip-arca'
0.890138 Supp     b'-2:lemma:10'
0.889352 Med      b'lemma:minimal'
0.889352 Med      b'word:minimal'
0.886589 Phase    b'-1:lemma:mid-log'
0.886589 Phase    b'-1:word:mid-log'
0.883854 Gtype    b'-1:postag:VBG'
0.882572 Med      b'isUpper'
0.882565 Air      b'-2:postag:CD'
0.880724 O        b'+1:lemma:0.2'
0.880724 O        b'+1:word:0.2'
0.877587 Substrain b'-1:lemma:.'
0.877587 Substrain b'-1:postag:.'
0.877587 Substrain b'-1:word:.'
0.876064 O        b'lemma:chip-arca'
0.876064 O        b'word:chip-ArcA'
0.876064 O        b'+2:lemma:arca8myc'
0.874629 Gversion b'postag:NN'
0.874358 pH       b'-1:postag:NN'
0.874179 O        b'+1:lemma:\xe2\x88\x86'
0.874179 O        b'+1:word:\xe2\x88\x86'
0.872402 O        b'postag:-LRB-'
0.871049 Technique b'hLower'
0.862881 O        b'lemma:argr'
0.862881 O        b'word:ArgR'
0.862560 Supp     b'+1:lemma:_'
0.862560 Supp     b'+1:word:_'
0.857080 pH       b'lemma:.5'
0.857080 pH       b'-1:lemma:ph5'
0.857080 pH       b'word:.5'
0.857080 pH       b'-1:word:pH5'
0.852182 Gtype    b'+2:postag:NN'
0.848736 O        b'-1:postag:NNP'
0.843632 O        b'lemma:soxr'
0.843632 O        b'word:SoxR'
0.843632 O        b'lemma:soxs'
0.843632 O        b'word:SoxS'
0.842462 Gtype    b'-1:lemma:rpob'
0.842462 Gtype    b'-1:word:RpoB'
0.842236 O        b'-1:lemma:into'
0.842236 O        b'-1:word:into'
0.837504 O        b'+1:lemma:250'
0.837504 O        b'+1:word:250'
0.833891 Gtype    b'-1:postag:VBP'
0.828879 Supp     b'+2:lemma:add'
0.822954 Vess     b'+1:lemma:at'
0.822954 Vess     b'+1:word:at'
0.821884 Med      b'postag:NNP'
0.815520 Med      b'+1:lemma:2.0'
0.815520 Med      b'+1:word:2.0'
0.815321 O        b'+2:lemma:wt'
0.810956 Supp     b'-2:lemma:agent'
0.807918 O        b'-1:lemma:anaerobic'
0.807543 O        b'+2:postag:VB'
0.806466 Air      b'-1:postag:CD'
0.804277 Supp     b'+1:lemma:Deficient'
0.802907 Supp     b'postag:NN'
0.801887 Air      b'-2:lemma:0.3'
0.801837 Air      b'-2:lemma:%'
0.796132 Supp     b'+1:word:hours'
0.793933 O        b'lemma:from'
0.793933 O        b'word:from'
0.793564 O        b'+2:lemma:chipseq'
0.790846 Strain   b'+1:lemma:substr'
0.790846 Strain   b'+1:word:substr'
0.790846 Strain   b'-2:lemma:str'
0.789846 Substrain b'+2:postag::'
0.785119 Agit     b'+1:lemma:rpm'
0.785119 Agit     b'+1:word:rpm'
0.784407 Supp     b'+2:lemma:A'
0.782393 O        b'-2:lemma:ml'
0.775150 Air      b'+1:lemma:%'
0.775150 Air      b'+1:word:%'
0.763476 Gtype    b'-1:lemma:_'
0.763476 Gtype    b'-1:word:_'
0.757889 Agit     b'lemma:250'
0.757889 Agit     b'word:250'
0.757851 O        b'lemma:ml'
0.757842 O        b'-1:lemma:media'
0.757842 O        b'-1:word:media'
0.756192 OD       b'lemma:of'
0.756192 OD       b'word:of'
0.755166 Gtype    b'word:fnr'
0.754334 Temp     b'isNumber'
0.753815 Med      b'+1:lemma:+'
0.753815 Med      b'+1:word:+'
0.748960 Air      b'lemma:%'
0.748960 Air      b'word:%'
0.747666 O        b'-1:postag:NN'
0.747213 O        b'-1:lemma:wt'
0.744968 O        b'-1:lemma:antibody'
0.744968 O        b'-1:word:antibody'
0.736319 Agit     b'-2:lemma:aerobically'
0.729642 OD       b'postag:IN'
0.729303 O        b'postag:DT'
0.726640 OD       b'lemma:od600'
0.726640 OD       b'word:OD600'
0.726528 Gtype    b'-1:lemma:ptac'
0.726528 Gtype    b'-1:word:Ptac'
0.721368 Technique b'-2:postag:NNP'
0.719183 O        b'postag:NNS'
0.718006 O        b'lemma:trpr'
0.718006 O        b'word:TrpR'
0.716377 pH       b'+1:lemma:5.5'
0.716377 pH       b'+1:word:5.5'
0.715138 Air      b'-1:lemma:%'
0.715138 Air      b'-1:word:%'
0.713365 OD       b'-1:lemma:at'
0.712574 Supp     b'+2:lemma:-lrb-'
0.704237 Gversion b'lemma:nc'
0.704237 Gversion b'word:NC'
0.704237 Gversion b'+2:lemma:000913'
0.703975 Gversion b'-1:lemma:nc'
0.703975 Gversion b'+1:lemma:000913'
0.703975 Gversion b'-1:word:NC'
0.703975 Gversion b'+1:word:000913'
0.703346 Air      b'-2:lemma:cm20'
0.702952 O        b'lemma:additional'
0.702952 O        b'+1:lemma:2h'
0.702952 O        b'word:additional'
0.702952 O        b'+1:word:2h'
0.699222 Gtype    b'lemma:nsrr'
0.699222 Gtype    b'word:NsrR'
0.699222 Gtype    b'+2:lemma:flagtag'
0.698336 O        b'+1:postag:VBZ'


Top negative:
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