report_Run7_v13.txt 38.1 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.06737663911834837, 'c2': 0.0163078954942134}
best CV score:0.836408383376389
model size: 0.15M

Flat F1: 0.8210747630516186
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      1.000     0.800     0.889        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.600     0.580     0.590        88
       Anti      0.929     1.000     0.963        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.913     0.808     0.857        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.870     0.838     0.854       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.860     0.789     0.821       484


Top likely transitions:
Temp   -> Temp    5.523016
Supp   -> Supp    5.352594
Anti   -> Anti    4.901682
Gtype  -> Gtype   4.851100
Med    -> Med     4.798289
OD     -> OD      4.681971
O      -> O       4.663400
Gversion -> Gversion 4.433446
Air    -> Air     4.404712
Phase  -> Phase   3.934324
Technique -> Technique 3.538317
pH     -> pH      2.510537
Substrain -> Gtype   1.963448
Agit   -> Agit    1.758548
Gtype  -> Supp    1.238171
O      -> Technique 1.085899
O      -> Gtype   0.740905
O      -> Supp    0.740004
Technique -> Air     0.596079
Air    -> O       0.504890
Temp   -> O       0.474030
Supp   -> O       0.233984
Gtype  -> pH      0.206721
O      -> Gversion 0.062503
O      -> pH      0.062451
O      -> Agit    0.016453
Med    -> O       0.008620
O      -> Temp    0.007725
Gtype  -> Air     0.001114
Phase  -> Air     -0.005626
Anti   -> Gtype   -0.016651
Gtype  -> Technique -0.109651
Technique -> O       -0.117150
O      -> Med     -0.157877
Anti   -> Supp    -0.180173
Gtype  -> Med     -0.180869
Air    -> Agit    -0.201715
Supp   -> Phase   -0.209483
O      -> OD      -0.254336
Gtype  -> Phase   -0.257923
Air    -> Phase   -0.367870
Phase  -> O       -0.391283
OD     -> O       -0.392592
OD     -> Air     -0.476572
O      -> Phase   -0.485398
Phase  -> Supp    -0.505683
Agit   -> Air     -0.521474
Temp   -> Med     -0.613903
Gtype  -> O       -0.659707
Phase  -> OD      -0.727090
O      -> Air     -0.868788
Technique -> Gtype   -1.016997
Supp   -> Med     -1.023780
Substrain -> O       -1.110502
Technique -> pH      -1.253913
Med    -> Supp    -2.033301


Top unlikely transitions:
Temp   -> Temp    5.523016
Supp   -> Supp    5.352594
Anti   -> Anti    4.901682
Gtype  -> Gtype   4.851100
Med    -> Med     4.798289
OD     -> OD      4.681971
O      -> O       4.663400
Gversion -> Gversion 4.433446
Air    -> Air     4.404712
Phase  -> Phase   3.934324
Technique -> Technique 3.538317
pH     -> pH      2.510537
Substrain -> Gtype   1.963448
Agit   -> Agit    1.758548
Gtype  -> Supp    1.238171
O      -> Technique 1.085899
O      -> Gtype   0.740905
O      -> Supp    0.740004
Technique -> Air     0.596079
Air    -> O       0.504890
Temp   -> O       0.474030
Supp   -> O       0.233984
Gtype  -> pH      0.206721
O      -> Gversion 0.062503
O      -> pH      0.062451
O      -> Agit    0.016453
Med    -> O       0.008620
O      -> Temp    0.007725
Gtype  -> Air     0.001114
Phase  -> Air     -0.005626
Anti   -> Gtype   -0.016651
Gtype  -> Technique -0.109651
Technique -> O       -0.117150
O      -> Med     -0.157877
Anti   -> Supp    -0.180173
Gtype  -> Med     -0.180869
Air    -> Agit    -0.201715
Supp   -> Phase   -0.209483
O      -> OD      -0.254336
Gtype  -> Phase   -0.257923
Air    -> Phase   -0.367870
Phase  -> O       -0.391283
OD     -> O       -0.392592
OD     -> Air     -0.476572
O      -> Phase   -0.485398
Phase  -> Supp    -0.505683
Agit   -> Air     -0.521474
Temp   -> Med     -0.613903
Gtype  -> O       -0.659707
Phase  -> OD      -0.727090
O      -> Air     -0.868788
Technique -> Gtype   -1.016997
Supp   -> Med     -1.023780
Substrain -> O       -1.110502
Technique -> pH      -1.253913
Med    -> Supp    -2.033301


Top positive:
6.095539 Anti     b'-2:lemma:antibody'
5.386646 O        b'-2:lemma:_'
4.466758 Phase    b'-2:lemma:phase'
4.174022 O        b'word:Cra'
4.163913 Air      b'lemma:anaerobic'
3.815780 Gtype    b'-2:lemma:genotype/variation'
3.782343 O        b'lemma:_'
3.782343 O        b'word:_'
3.720407 Technique b'word:ChIP-exo'
3.691789 Technique b'word:ChIP-Seq'
3.314584 Air      b'word:Aerobic'
3.259952 O        b'+1:postag:RB'
3.255824 Gtype    b'-2:lemma:affyexp'
3.237131 Gtype    b'word:WT'
3.154736 Supp     b'-2:lemma:shake'
3.148517 Phase    b'lemma:mid-log'
3.148517 Phase    b'word:mid-log'
3.140788 Supp     b'lemma:nh4cl'
3.106393 Gtype    b'lemma:type'
3.106393 Gtype    b'word:type'
3.093934 O        b'+2:lemma:\xc2\xb0c'
3.088135 Technique b'lemma:rna-seq'
3.064808 Med      b'word:LB'
3.014741 Supp     b'lemma:pq'
3.014741 Supp     b'word:PQ'
3.002707 Technique b'+2:lemma:ph5'
2.980962 Gtype    b'-2:lemma:genotype'
2.977986 Supp     b'-1:word:Cra'
2.960742 Technique b'word:ChIPSeq'
2.958553 Supp     b'lemma:no3'
2.958553 Supp     b'word:NO3'
2.860633 O        b'+2:lemma:crp'
2.831163 O        b'lemma:1'
2.831163 O        b'word:1'
2.774476 O        b'postag:VBG'
2.756943 Strain   b'lemma:k-12'
2.756943 Strain   b'word:K-12'
2.756551 O        b'lemma:-'
2.756551 O        b'word:-'
2.726793 O        b'lemma:2'
2.726793 O        b'word:2'
2.706515 Air      b'word:Anaerobic'
2.644661 O        b'lemma:.'
2.644661 O        b'postag:.'
2.644661 O        b'word:.'
2.599881 Technique b'lemma:chipseq'
2.588784 Med      b'lemma:MOPS'
2.588784 Med      b'word:MOPS'
2.564037 Supp     b'+2:lemma:rifampicin'
2.538973 Gtype    b'-1:lemma:\xe2\x88\x86'
2.538973 Gtype    b'-1:word:\xe2\x88\x86'
2.537734 Gtype    b'lemma:wt'
2.533187 Supp     b'lemma:arginine'
2.487660 Gtype    b'-2:lemma:delta'
2.434938 Gtype    b'lemma:\xce\xb4fur'
2.434938 Gtype    b'word:\xce\x94fur'
2.429336 O        b'word:A'
2.421294 O        b'lemma:3'
2.421294 O        b'word:3'
2.410574 O        b'lemma:at'
2.377731 Gtype    b'lemma:\xce\xb4cra'
2.370094 Gtype    b'word:\xce\x94cra'
2.357814 Supp     b'+2:lemma:iptg'
2.337573 O        b'-1:word:Anaerobic'
2.313838 O        b'lemma:rpob'
2.313838 O        b'word:RpoB'
2.300920 Supp     b'lemma:Iron'
2.300920 Supp     b'word:Iron'
2.300920 Supp     b'+1:word:Deficient'
2.300920 Supp     b'-2:lemma:Anaerobic'
2.274939 O        b'-1:lemma:lb'
2.268117 O        b'-2:lemma:flagtag'
2.224087 Gtype    b'+1:lemma:type'
2.224087 Gtype    b'+1:word:type'
2.213097 Air      b'-1:lemma:ChIP-Seq'
2.213097 Air      b'-1:word:ChIP-Seq'
2.192570 Med      b'+2:postag:CC'
2.189115 Supp     b'lemma:glucose'
2.189115 Supp     b'word:glucose'
2.186927 Air      b'-2:lemma:IP'
2.167998 O        b'-1:word:Aerobic'
2.166423 Supp     b'lemma:2h'
2.166423 Supp     b'-1:lemma:additional'
2.166423 Supp     b'word:2h'
2.166423 Supp     b'-1:word:additional'
2.144708 O        b'lemma:with'
2.144708 O        b'word:with'
2.137020 O        b'postag::'
2.106220 O        b'-1:word:tag'
2.105566 pH       b'+1:postag:CD'
2.095025 Supp     b'+1:lemma:\xc2\xb5m'
2.095025 Supp     b'+1:word:\xc2\xb5M'
2.093746 O        b'word:Lrp'
2.088997 O        b'-1:word:ChIP-exo'
2.088378 Substrain b'-2:lemma:substr'
2.086266 O        b'-2:lemma:overnight'
2.081854 O        b'lemma:b'
2.081854 O        b'word:B'
2.075728 Gtype    b'postag:JJ'
2.061876 O        b'word:OmpR'
2.051512 O        b'-2:lemma:medium'
2.030677 Supp     b'-2:lemma:media'
2.029666 Gtype    b'lemma:\xe2\x88\x86'
2.029666 Gtype    b'word:\xe2\x88\x86'
2.027022 Med      b'+2:lemma:b2'
2.026696 Supp     b'-2:lemma:purr'
2.013114 Supp     b'lemma:acetate'
2.013114 Supp     b'word:acetate'
1.988462 O        b'+1:postag:NNP'
1.979455 O        b'-1:lemma:ChIP-exo'
1.968758 Air      b'lemma:aerobically'
1.968758 Air      b'word:aerobically'
1.965599 Gversion b'lemma:chip-seq'
1.960799 O        b'-1:postag:NNS'
1.943859 O        b'postag:IN'
1.932354 O        b'-2:lemma:myc'
1.932025 Supp     b'-2:lemma:argr'
1.930292 Phase    b'+2:lemma:o.d.'
1.884322 Supp     b'-1:lemma:Cra'
1.883113 O        b'-1:lemma:tag'
1.874064 Substrain b'lemma:mg1655'
1.874064 Substrain b'word:MG1655'
1.872939 O        b'-2:lemma:='
1.863175 O        b'+1:word:ChIP-Seq'
1.845355 Gtype    b'+2:lemma:glucose'
1.842055 Med      b'lemma:media'
1.842055 Med      b'word:media'
1.824908 O        b'postag:VBN'
1.795500 O        b'+1:lemma:fnr-8myc'
1.795500 O        b'+1:word:Fnr-8myc'
1.791142 Phase    b'lemma:stationary'
1.791142 Phase    b'word:stationary'
1.791142 Phase    b'lemma:exponential'
1.791142 Phase    b'word:exponential'
1.788782 Gversion b'word:ChIP-Seq'
1.770710 Gtype    b'lemma:\xce\xb4ompr'
1.770710 Gtype    b'word:\xce\x94ompR'
1.770151 Technique b'lemma:ChIP-exo'
1.764070 O        b'lemma:harbor'
1.764070 O        b'word:harboring'
1.762029 O        b'+1:lemma:od600'
1.762029 O        b'+1:word:OD600'
1.740350 Med      b'lemma:LB'
1.739728 Technique b'word:RNA-Seq'
1.723679 Technique b'-1:lemma:chip-exo'
1.717209 Air      b'postag:JJ'
1.716044 O        b'+1:word:WT'
1.698810 O        b'-1:lemma:media'
1.698810 O        b'-1:word:media'
1.693583 O        b'-1:lemma:0.3'
1.693583 O        b'-1:word:0.3'
1.691045 O        b'+1:lemma:wt'
1.681563 Air      b'lemma:anaeroibc'
1.681563 Air      b'word:Anaeroibc'
1.665400 O        b'lemma:purr'
1.665400 O        b'word:PurR'
1.665147 O        b'lemma:rep2'
1.665147 O        b'word:rep2'
1.665147 O        b'lemma:rep1'
1.665147 O        b'word:rep1'
1.650324 Med      b'+2:lemma:b1'
1.641098 Supp     b'lemma:iptg'
1.641098 Supp     b'word:IPTG'
1.638082 O        b'lemma:chip'
1.617518 O        b'lemma:Cra'
1.617491 Supp     b'lemma:Adenine'
1.617491 Supp     b'word:Adenine'
1.612989 Air      b'-1:lemma:-'
1.612989 Air      b'-1:word:-'
1.602372 O        b'lemma:soxr'
1.602372 O        b'word:SoxR'
1.602372 O        b'lemma:soxs'
1.602372 O        b'word:SoxS'
1.598120 Gtype    b'lemma:pk4854'
1.598120 Gtype    b'word:PK4854'
1.591376 O        b'word:C'
1.586635 Temp     b'-1:word:sample'
1.575313 Temp     b'-2:lemma:keep'
1.574085 O        b'lemma:culture'
1.561024 Supp     b'lemma:rifampicin'
1.561024 Supp     b'word:rifampicin'
1.556140 Temp     b'-1:lemma:sample'
1.555937 O        b'lemma:argr'
1.555937 O        b'word:ArgR'
1.538565 O        b'+2:lemma:allow'
1.535273 O        b'+1:lemma:pq'
1.535273 O        b'+1:word:PQ'
1.532808 Temp     b'lemma:\xc2\xb0c'
1.532808 Temp     b'word:\xc2\xb0C'
1.521745 O        b'lemma:for'
1.517468 Gtype    b'lemma:wild-type'
1.512706 O        b'lemma:CEL'
1.512706 O        b'word:CEL'
1.505780 O        b'isLower'
1.491169 Gtype    b'lemma:dfnr'
1.491169 Gtype    b'word:dFNR'
1.486246 Supp     b'lemma:Leu'
1.486246 Supp     b'word:Leu'
1.486246 Supp     b'-2:lemma:Lrp'
1.480945 Technique b'lemma:rnaseq'
1.480945 Technique b'word:RNASeq'
1.480543 Vess     b'lemma:flask'
1.480543 Vess     b'-1:lemma:warm'
1.480543 Vess     b'word:flask'
1.480543 Vess     b'-1:word:warmed'
1.480543 Vess     b'-2:lemma:pre'
1.480543 Vess     b'+2:lemma:43'
1.466292 O        b'lemma:trpr'
1.466292 O        b'word:TrpR'
1.464695 Gversion b'-2:lemma:build'
1.447320 O        b'+2:postag:JJ'
1.446478 O        b'lemma::'
1.446478 O        b'word::'
1.445458 O        b'-1:lemma:type'
1.445458 O        b'-1:word:type'
1.437695 Med      b'+1:lemma:0.4'
1.437695 Med      b'+1:word:0.4'
1.435198 Temp     b'-1:lemma:\xcf\x8332'
1.435198 Temp     b'-1:word:\xcf\x8332'
1.426557 Gtype    b'lemma:\xce\xb4oxyr'
1.426557 Gtype    b'word:\xce\x94oxyR'
1.424986 Supp     b'-1:word:OmpR'
1.423643 Med      b'lemma:medium'
1.423643 Med      b'word:medium'
1.422903 Temp     b'+1:lemma:\xc2\xb0c'
1.422903 Temp     b'+1:word:\xc2\xb0C'
1.422050 Air      b'postag:RB'
1.419530 Supp     b'lemma:nacl'
1.419530 Supp     b'word:NaCl'
1.418961 Air      b'word:anaerobic'
1.416187 pH       b'lemma:ph5'
1.416187 pH       b'+1:lemma:.5'
1.416187 pH       b'word:pH5'
1.416187 pH       b'+1:word:.5'
1.412055 Supp     b'-1:lemma:+'
1.412055 Supp     b'-1:word:+'
1.411701 O        b'-2:lemma:ChIP-Seq'
1.401071 O        b'lemma:ompr'
1.397248 Vess     b'-1:postag:VBN'
1.389460 Supp     b'+1:lemma:1'
1.389460 Supp     b'+1:word:1'
1.382352 Technique b'-2:lemma:wt'
1.380589 Air      b'-2:lemma:0.3'
1.373126 Supp     b'+1:lemma:2'
1.373126 Supp     b'+1:word:2'
1.367776 Air      b'lemma:aerobic'
1.361704 O        b'-1:lemma:glucose'
1.361704 O        b'-1:word:glucose'
1.358602 Supp     b'-2:postag:VBG'
1.354832 Air      b'-2:lemma:fnr'
1.354547 Temp     b'-2:lemma:\xcf\x8332'
1.352589 Phase    b'-2:lemma:until'
1.342535 Gversion b'lemma:asm584v2'
1.342535 Gversion b'word:ASM584v2'
1.340349 Gtype    b'postag:-RRB-'
1.338646 Agit     b'lemma:rpm'
1.338646 Agit     b'word:rpm'
1.336288 Gtype    b'-1:lemma:rpob'
1.336288 Gtype    b'-1:word:RpoB'
1.332789 Supp     b'+2:lemma:mid-log'
1.327339 Supp     b'-2:lemma:induce'
1.324942 Gversion b'lemma:000913'
1.324942 Gversion b'word:000913'
1.324942 Gversion b'-2:lemma:nc'
1.307421 Temp     b'-1:lemma:37'
1.307421 Temp     b'-1:word:37'
1.297803 Supp     b'-2:lemma:agent'
1.293441 O        b'word:for'
1.290868 O        b'-1:lemma:\xc2\xb0c'
1.290868 O        b'-1:word:\xc2\xb0C'
1.286464 Temp     b'lemma:43'
1.286464 Temp     b'word:43'
1.280127 O        b'word:GadX'
1.276290 Supp     b'-2:lemma:for'
1.270745 Med      b'isUpper'
1.265865 Temp     b'lemma:37'
1.265865 Temp     b'word:37'
1.263831 O        b'postag:DT'
1.250229 O        b'+1:lemma:250'
1.250229 O        b'+1:word:250'
1.249280 Supp     b'+1:lemma:Deficient'
1.244885 Supp     b'lemma:dpd'
1.244885 Supp     b'word:DPD'
1.243903 O        b'lemma:oxyr'
1.243903 O        b'word:OxyR'
1.242743 O        b'-2:lemma:min'
1.239785 Air      b'-1:postag::'
1.239521 Supp     b'+2:lemma:A'
1.233735 Gtype    b'+1:postag::'
1.215845 Gtype    b'-2:lemma:-rcb-'
1.214434 O        b'+2:lemma:constant'
1.212679 Gtype    b'-2:postag:NNS'
1.210400 Air      b'-2:postag:CD'
1.201335 Supp     b'-2:lemma:supplement'
1.194343 OD       b'lemma:0.3'
1.194343 OD       b'word:0.3'
1.187651 Agit     b'-1:lemma:250'
1.187651 Agit     b'-1:word:250'
1.187591 O        b'lemma:gadx'
1.187171 Supp     b'-1:postag:CC'
1.186731 Gversion b'-2:postag:VB'
1.185730 Supp     b'-1:lemma:with'
1.185730 Supp     b'-1:word:with'
1.185578 O        b'lemma:a'
1.185093 Med      b'lemma:m63'
1.185093 Med      b'word:M63'
1.172363 Supp     b'postag:NNP'
1.166910 O        b'-2:lemma:\xe2\x88\x86'
1.164391 Technique b'lemma:ChIP-Seq'
1.164198 Substrain b'+1:lemma:phtpg'
1.164198 Substrain b'+1:word:PhtpG'
1.164181 Gversion b'lemma:u00096'
1.164181 Gversion b'+1:lemma:.2'
1.164181 Gversion b'word:U00096'
1.164181 Gversion b'+1:word:.2'
1.162226 Med      b'+2:lemma:+'
1.161469 O        b'+1:lemma:mid-log'
1.161469 O        b'+1:word:mid-log'
1.159584 O        b'+1:lemma:rifampicin'
1.159584 O        b'+1:word:rifampicin'
1.158978 O        b'isNumber'
1.158916 O        b'+2:lemma:_'
1.157297 Technique b'-1:lemma:IP'
1.157297 Technique b'-1:word:IP'
1.157004 pH       b'-1:postag:NN'
1.155925 Gversion b'lemma:.2'
1.155925 Gversion b'-1:lemma:u00096'
1.155925 Gversion b'word:.2'
1.155925 Gversion b'-1:word:U00096'
1.152936 Technique b'-2:lemma:Fur'
1.144490 Substrain b'lemma:mg1655star'
1.144490 Substrain b'word:MG1655star'
1.144477 Temp     b'-1:lemma:43'
1.144477 Temp     b'-1:word:43'
1.139237 Agit     b'+1:lemma:rpm'
1.139237 Agit     b'+1:word:rpm'
1.139000 Gtype    b'lemma:\xce\xb4soxs'
1.139000 Gtype    b'word:\xce\x94soxS'
1.134774 Phase    b'postag:NN'
1.134026 O        b'+1:lemma:coli'
1.134026 O        b'+1:word:coli'
1.130615 Anti     b'+1:lemma:antibody'
1.130615 Anti     b'+1:word:antibody'
1.129613 Supp     b'lemma:fructose'
1.129613 Supp     b'word:fructose'
1.127672 Anti     b'-2:lemma:polymerase'
1.123866 O        b'+1:word:were'
1.113820 O        b'+1:lemma:\xe2\x88\x86'
1.113820 O        b'+1:word:\xe2\x88\x86'
1.110821 Strain   b'+1:lemma:substr'
1.110821 Strain   b'+1:word:substr'
1.110821 Strain   b'-2:lemma:str'
1.097622 OD       b'+2:lemma:0.3'
1.092847 Supp     b'lemma:Fe'
1.092847 Supp     b'word:Fe'
1.088507 Anti     b'+2:lemma:antibody'
1.088475 Gtype    b'lemma:\xce\xb4soxr'
1.088475 Gtype    b'word:\xce\x94soxR'
1.086147 O        b'lemma:input'
1.086147 O        b'+1:lemma:chip-seq'
1.086147 O        b'word:Input'
1.075763 Air      b'-2:lemma:cm20'
1.073343 Supp     b'-2:lemma:10'
1.070223 Temp     b'-2:postag:VBD'
1.066953 Gtype    b'-1:postag:VBG'
1.063727 O        b'-1:lemma:into'
1.063727 O        b'-1:word:into'
1.062900 Air      b'+2:lemma:37'
1.062773 Gtype    b'+1:lemma:ph5'
1.062773 Gtype    b'+1:word:pH5'
1.062773 Gtype    b'+2:lemma:.5'
1.061239 Supp     b'-1:lemma:potassium'
1.061239 Supp     b'-1:word:potassium'
1.061239 Supp     b'-2:lemma:mmol'
1.060275 Agit     b'+2:lemma:at'
1.055712 Technique b'-1:lemma:input'
1.055712 Technique b'-1:word:Input'
1.050983 Air      b'-1:postag:CD'
1.049448 Gtype    b'lemma:deltaseqa'
1.049448 Gtype    b'-1:lemma:old'
1.049448 Gtype    b'word:deltaSeqA'
1.049448 Gtype    b'-1:word:old'
1.049448 Gtype    b'-2:lemma:seqa'
1.045016 Gtype    b'+2:postag:NN'
1.044777 Supp     b'+1:lemma:_'
1.044777 Supp     b'+1:word:_'
1.044030 Gtype    b'-1:lemma:nsrr'
1.044030 Gtype    b'+1:lemma:flagtag'
1.044030 Gtype    b'-1:word:NsrR'
1.044030 Gtype    b'+1:word:Flagtag'
1.043912 pH       b'lemma:5.5'
1.043912 pH       b'word:5.5'
1.037347 Phase    b'-1:lemma:until'
1.037347 Phase    b'-1:word:until'
1.037161 Supp     b'-1:lemma:_'
1.037161 Supp     b'-1:word:_'
1.035566 Gtype    b'+1:lemma:pq'
1.035566 Gtype    b'+1:word:PQ'
1.034250 O        b'lemma:affyexp'
1.034250 O        b'word:affyexp'
1.030914 O        b'lemma:chip-arca'
1.030914 O        b'word:chip-ArcA'
1.030914 O        b'+2:lemma:arca8myc'
1.019702 O        b'-2:lemma:co2'
1.017618 O        b'-2:lemma:in'
1.015523 Gtype    b'lemma:arca8myc'
1.015523 Gtype    b'word:ArcA8myc'
1.015523 Gtype    b'-2:lemma:chip-arca'
1.013140 O        b'+2:postag:VB'
1.002440 O        b'-1:lemma:mg1655'
1.002440 O        b'-1:word:MG1655'
1.000229 Med      b'-2:postag:JJ'
0.999636 Supp     b'-1:postag:CD'
0.998994 Supp     b'word:NH4CL'
0.997896 Supp     b'-1:lemma:ompr'
0.990774 O        b'+2:lemma:rpm'
0.990727 OD       b'lemma:od450'
0.990727 OD       b'word:OD450'
0.990727 OD       b'-1:word:At'
0.990283 Gtype    b'-1:postag:VBP'
0.990275 Air      b'-2:lemma:nh4cl'
0.990226 Gtype    b'-1:lemma:ptac'
0.990226 Gtype    b'-1:word:Ptac'
0.989299 Air      b'+2:postag:CD'
0.988582 O        b'lemma:chip-fnr'
0.988582 O        b'word:chip-Fnr'
0.988582 O        b'+2:lemma:fnr8myc'
0.986965 Med      b'+1:lemma:g/l'
0.986965 Med      b'+1:word:g/L'
0.977346 Med      b'-1:word:ml'
0.976289 Gtype    b'+1:lemma:with'
0.976289 Gtype    b'+1:word:with'
0.975457 OD       b'postag:CD'
0.974999 O        b'postag:VBD'
0.974539 Med      b'-1:lemma:ml'
0.972727 Supp     b'+1:word:hours'
0.967345 Supp     b'-2:lemma:pahse'
0.962527 Gtype    b'-1:lemma:factor'
0.962527 Gtype    b'-1:word:factor'
0.962527 Gtype    b'-2:lemma:transcription'
0.961812 O        b'-1:lemma:anaerobic'
0.960834 Gtype    b'lemma:ptac'
0.960834 Gtype    b'word:Ptac'
0.956880 O        b'word:tagged'
0.948734 Air      b'-2:lemma:%'
0.947551 Supp     b'-2:lemma:20'
0.945853 Agit     b'lemma:250'
0.945853 Agit     b'word:250'
0.945612 Med      b'+1:lemma:2.0'
0.945612 Med      b'+1:word:2.0'
0.943029 Air      b'-1:lemma:co2'
0.943029 Air      b'-1:word:CO2'
0.933542 Technique b'-2:postag:NNP'
0.930070 O        b'word:cultures'
0.929743 O        b'postag:SYM'
0.929038 O        b'-1:word:fnr'
0.916760 Agit     b'-2:lemma:aerobically'
0.915878 pH       b'lemma:.5'
0.915878 pH       b'-1:lemma:ph5'
0.915878 pH       b'word:.5'
0.915878 pH       b'-1:word:pH5'
0.914994 Substrain b'-1:lemma:.'
0.914994 Substrain b'-1:postag:.'
0.914994 Substrain b'-1:word:.'
0.912784 Med      b'postag:NNP'
0.907227 Supp     b'+2:lemma:feso4'
0.901738 Technique b'-1:lemma:rna-seq'
0.901738 Technique b'-1:word:RNA-seq'
0.901271 Technique b'-1:lemma:_'
0.901271 Technique b'-1:word:_'
0.893355 O        b'-1:postag:NNP'
0.889905 O        b'-1:lemma:l1'
0.889905 O        b'-1:word:L1'
0.875208 O        b'+1:lemma:0.2'
0.875208 O        b'+1:word:0.2'
0.872440 Gtype    b'-2:postag:NN'
0.871043 Phase    b'-1:lemma:mid-log'
0.871043 Phase    b'-1:word:mid-log'
0.870909 O        b'lemma:ml'
0.868797 OD       b'+1:postag:IN'
0.867761 O        b'-1:lemma:wt'
0.867421 O        b'-2:lemma:Leu'
0.867003 OD       b'-1:lemma:od450'
0.867003 OD       b'-1:word:OD450'
0.860990 Gtype    b'postag:NN'
0.860096 Supp     b'-1:lemma:final'
0.860096 Supp     b'-1:word:final'
0.857862 O        b'-2:lemma:~'
0.856287 Anti     b'+2:postag:NNP'
0.847082 Med      b'lemma:minimal'
0.847082 Med      b'word:minimal'
0.844365 Agit     b'-2:postag:RB'
0.841748 pH       b'+1:lemma:5.5'
0.841748 pH       b'+1:word:5.5'
0.840928 O        b'lemma:\xcf\x8332'
0.840928 O        b'word:\xcf\x8332'
0.839941 Med      b'postag:NNS'
0.838453 Med      b'+1:lemma:minimal'
0.838453 Med      b'+1:word:minimal'
0.838014 Gversion b'postag:CD'


Top negative:
-0.018878 Air      b'postag:CD'
-0.018951 O        b'+1:lemma:min'
-0.018951 O        b'+1:word:min'
-0.019827 Supp     b'lemma:-rrb-'
-0.019827 Supp     b'word:-RRB-'
-0.020718 O        b'+2:lemma:rnase'
-0.021192 O        b'+1:lemma:95'
-0.021192 O        b'+1:word:95'
-0.022202 O        b'-2:lemma:at'
-0.022215 O        b'+1:lemma:\xc2\xb0c'
-0.022215 O        b'+1:word:\xc2\xb0C'
-0.022241 Med      b'-2:lemma:in'
-0.022638 Air      b'postag:-RRB-'
-0.022742 Gtype    b'+2:lemma:cra'
-0.022986 OD       b'+1:lemma:2.0'
-0.022986 OD       b'+1:word:2.0'
-0.024097 Air      b'-1:lemma:grow'
-0.024942 Air      b'-1:word:grown'
-0.025067 O        b'+1:lemma:5'
-0.025067 O        b'+1:word:5'
-0.026384 O        b'lemma:95'
-0.026384 O        b'word:95'
-0.026594 O        b'-1:lemma:\xe2\x88\x86'
-0.026594 O        b'-1:word:\xe2\x88\x86'
-0.026741 OD       b'+1:lemma:for'
-0.026759 OD       b'+1:word:for'
-0.027890 O        b'lemma:n2'
-0.027890 O        b'word:N2'
-0.028061 OD       b'+2:lemma:2.0'
-0.028216 O        b'+1:lemma:2.0'
-0.028216 O        b'+1:word:2.0'
-0.028295 Gtype    b'+1:postag:CC'
-0.029649 O        b'-2:lemma:mm'
-0.031120 Supp     b'+1:word:were'
-0.031166 O        b'-2:lemma:0.1'
-0.031286 Supp     b'+2:postag:JJ'
-0.032370 Air      b'-2:postag:VBD'
-0.032746 Supp     b'postag:-RRB-'
-0.033715 O        b'+1:lemma:sample'
-0.033986 O        b'lemma:final'
-0.033986 O        b'word:final'
-0.034044 Supp     b'-1:lemma:in'
-0.034044 Supp     b'-1:word:in'
-0.034772 O        b'lemma:250'
-0.034772 O        b'word:250'
-0.035361 Med      b'lemma:-lrb-'
-0.035361 Med      b'word:-LRB-'
-0.035388 Phase    b'+1:postag:NN'
-0.036710 O        b'+1:postag:DT'
-0.036775 Supp     b'-2:lemma:;'
-0.036840 O        b'+2:lemma:0.2'
-0.038979 Supp     b'lemma:vol'
-0.038979 Supp     b'-1:lemma:1/100'
-0.038979 Supp     b'word:vol'
-0.038979 Supp     b'-1:word:1/100'
-0.040015 O        b'lemma:\xe2\x88\x86'
-0.040015 O        b'word:\xe2\x88\x86'
-0.040712 O        b'+1:lemma:a'
-0.040872 OD       b'lemma:2.0'
-0.040872 OD       b'word:2.0'
-0.041929 Supp     b'lemma:ph'
-0.041929 Supp     b'word:pH'
-0.042070 Supp     b'-1:lemma:.'
-0.042070 Supp     b'-1:postag:.'
-0.042070 Supp     b'-1:word:.'
-0.042109 OD       b'isUpper'
-0.042578 O        b'+1:lemma:300'
-0.042578 O        b'+1:word:300'
-0.043467 Air      b'+2:lemma:70'
-0.045238 Med      b'postag:-LRB-'
-0.045333 O        b'lemma:phase'
-0.045333 O        b'word:phase'
-0.045445 O        b'-2:postag:-RRB-'
-0.046296 Temp     b'+2:postag:JJ'
-0.046328 O        b'-1:lemma:o2'
-0.046328 O        b'-1:word:O2'
-0.047082 Supp     b'-2:lemma:,'
-0.047082 Supp     b'-2:postag:,'
-0.047298 Supp     b'-2:lemma:treat'
-0.047649 Air      b'+2:lemma:or'
-0.047888 Supp     b'+2:lemma:glucose'
-0.047961 OD       b'+2:postag:DT'
-0.048005 O        b'lemma:nacl'
-0.048005 O        b'word:NaCl'
-0.049002 O        b'+1:lemma:dissolve'
-0.049002 O        b'+1:word:dissolved'
-0.049435 OD       b'lemma:='
-0.049435 OD       b'word:='
-0.049705 OD       b'+1:lemma:0.4'
-0.049705 OD       b'+1:word:0.4'
-0.050210 Supp     b'-2:lemma:with'
-0.050800 Supp     b'+2:lemma:mm'
-0.051318 O        b'+1:lemma:co2'
-0.051318 O        b'+1:word:CO2'
-0.052470 O        b'-1:lemma:sodium'
-0.052470 O        b'-1:word:Sodium'
-0.052470 O        b'+2:lemma:1/100'
-0.053065 O        b'lemma:\xce\xb4soxs'
-0.053065 O        b'word:\xce\x94soxS'
-0.053141 Temp     b'-1:postag:IN'
-0.053267 Supp     b'-1:lemma:250'
-0.053267 Supp     b'-1:word:250'
-0.053513 Air      b'-1:postag:VBN'
-0.053651 O        b'+2:lemma:tag'
-0.055577 O        b'-1:lemma:phosphate'
-0.055577 O        b'-1:word:phosphate'
-0.055897 O        b'-2:postag:RB'
-0.058956 O        b'-2:lemma:of'
-0.059767 Gtype    b'-1:lemma:mg1655'
-0.059767 Gtype    b'-1:word:MG1655'
-0.061700 Supp     b'-1:lemma:10'
-0.061700 Supp     b'-1:word:10'
-0.063765 O        b'+1:lemma:contain'
-0.063765 O        b'+1:word:containing'
-0.065056 O        b'word:LB'
-0.065121 O        b'-1:lemma:final'
-0.065121 O        b'-1:word:final'
-0.065310 O        b'lemma:fecl2'
-0.065310 O        b'word:FeCl2'
-0.066007 O        b'+1:lemma:phase'
-0.066007 O        b'+1:word:phase'
-0.066305 Supp     b'-2:lemma:0.2'
-0.066554 O        b'+2:lemma:follow'
-0.066566 O        b'lemma:7.6'
-0.066566 O        b'+1:lemma:;'
-0.066566 O        b'word:7.6'
-0.066566 O        b'+1:word:;'
-0.067102 O        b'+1:lemma:fecl2'
-0.067102 O        b'+1:word:FeCl2'
-0.068232 O        b'+1:lemma:.'
-0.068232 O        b'+1:postag:.'
-0.068232 O        b'+1:word:.'
-0.069234 Med      b'-1:word:LB'
-0.070301 O        b'lemma:0.2'
-0.070301 O        b'word:0.2'
-0.070966 O        b'word:tag'
-0.071219 O        b'-1:lemma:n2'
-0.071219 O        b'-1:word:N2'
-0.073953 O        b'-1:lemma:-lrb-'
-0.073953 O        b'-1:word:-LRB-'
-0.074007 O        b'+2:lemma:glucose'
-0.074369 O        b'-2:lemma:phase'
-0.075247 O        b'-2:lemma:10'
-0.078433 O        b'+1:lemma:medium'
-0.078433 O        b'+1:word:medium'
-0.078934 Air      b'isUpper'
-0.079494 O        b'+1:lemma:of'
-0.079494 O        b'+1:word:of'
-0.080516 O        b'-1:lemma:.'
-0.080516 O        b'-1:postag:.'
-0.080516 O        b'-1:word:.'
-0.080699 O        b'lemma:;'
-0.080699 O        b'-1:lemma:7.6'
-0.080699 O        b'word:;'
-0.080699 O        b'-1:word:7.6'
-0.083649 Supp     b'-1:lemma:dpd'
-0.083649 Supp     b'-1:word:DPD'
-0.084353 Air      b'-2:postag:-RRB-'
-0.085358 O        b'lemma:150'
-0.085358 O        b'+1:lemma:mg/ml'
-0.085358 O        b'word:150'
-0.085358 O        b'+1:word:mg/mL'
-0.085358 O        b'-2:lemma:concentration'
-0.087080 OD       b'+2:postag:NN'
-0.089929 O        b'-1:postag:DT'
-0.089967 Air      b'+2:lemma:until'
-0.090400 O        b'-1:lemma:0.2'
-0.090400 O        b'-1:word:0.2'
-0.091686 Temp     b'-1:lemma:at'
-0.092046 O        b'postag:NN'
-0.093158 O        b'-1:lemma:ml'
-0.093769 O        b'lemma:m63'
-0.093769 O        b'word:M63'
-0.094190 O        b'lemma:\xce\xb4oxyr'
-0.094190 O        b'word:\xce\x94oxyR'
-0.096367 O        b'-1:lemma:m9'
-0.096367 O        b'-1:word:M9'
-0.096458 Temp     b'-1:word:at'
-0.096795 O        b'-1:lemma:rifampicin'
-0.096795 O        b'-1:word:rifampicin'
-0.098172 O        b'lemma:\xce\xb4ompr'
-0.098172 O        b'word:\xce\x94ompR'
-0.098920 Supp     b'-1:postag:VBN'
-0.099185 O        b'+1:lemma:1/100'
-0.099185 O        b'+1:word:1/100'
-0.099185 O        b'-2:lemma:sodium'
-0.099185 O        b'+2:lemma:vol'
-0.099775 O        b'+1:lemma:-rrb-'
-0.099775 O        b'+1:word:-RRB-'
-0.099915 O        b'lemma:\xce\xb4soxr'
-0.099915 O        b'word:\xce\x94soxR'
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-0.100907 OD       b'-2:postag:DT'
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-0.105532 O        b'+1:lemma:genome'
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-0.108523 O        b'-2:postag:TO'
-0.109701 Supp     b'-2:lemma:.'
-0.109701 Supp     b'-2:postag:.'
-0.111425 O        b'-2:postag:DT'
-0.112342 O        b'-1:lemma:mm'
-0.112342 O        b'-1:word:mM'
-0.112468 Air      b'-2:lemma:-rrb-'
-0.112575 O        b'lemma:methanol'
-0.112575 O        b'word:methanol'
-0.112575 O        b'-2:lemma:dissolve'
-0.117703 O        b'+2:lemma:culture'
-0.119361 O        b'-1:lemma:1m'
-0.119361 O        b'-1:word:1M'
-0.119361 O        b'+2:lemma:7.6'
-0.121463 Temp     b'+1:postag:IN'
-0.127341 O        b'+2:lemma:co2'
-0.129367 Supp     b'+1:lemma:dpd'
-0.129367 Supp     b'+1:word:DPD'
-0.130148 O        b'+2:lemma:in'
-0.131299 O        b'+1:lemma:supplement'
-0.131299 O        b'+1:word:supplemented'
-0.131879 O        b'+2:lemma:media'
-0.133621 O        b'+2:lemma:at'
-0.134411 O        b'-2:lemma:g/l'
-0.135449 O        b'+2:lemma:~'
-0.135483 Technique b'+2:postag:CD'
-0.136125 O        b'+2:lemma:sample'
-0.136514 Gtype    b'+1:lemma:crp'
-0.136514 Gtype    b'+1:word:crp'
-0.137329 O        b'lemma:1m'
-0.137329 O        b'word:1M'
-0.137404 O        b'lemma:co2'
-0.137404 O        b'word:CO2'
-0.138197 O        b'-2:lemma:stir'
-0.138752 Med      b'postag:CD'
-0.145838 O        b'+1:lemma:-lrb-'
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