********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.010282986493093815, 'c2': 0.03274468699878101}
best CV score:0.8192294924716081
model size: 0.18M

Flat F1: 0.8006439527374208
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.895     0.386     0.540        88
       Anti      0.900     0.692     0.783        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.938     0.769     0.845        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.851     0.838     0.844       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.907     0.740     0.801       484


Top likely transitions:
Temp   -> Temp    4.892467
Med    -> Med     4.717507
Supp   -> Supp    4.711443
Gtype  -> Gtype   4.543168
Anti   -> Anti    4.521275
Phase  -> Phase   4.182195
Air    -> Air     4.085931
O      -> O       4.083540
OD     -> OD      4.073316
Gversion -> Gversion 3.681981
Technique -> Technique 2.774775
pH     -> pH      2.740322
Agit   -> Agit    1.987065
Substrain -> Gtype   1.332628
Technique -> Air     0.705506
O      -> Technique 0.696502
O      -> Gtype   0.681950
Gtype  -> Supp    0.600279
O      -> Supp    0.491907
Strain -> O       0.266413
Air    -> O       0.186348
Gtype  -> pH      0.138050
O      -> pH      0.133771
Temp   -> O       0.040415
Gtype  -> Air     0.027552
O      -> Strain  0.007581
Med    -> Agit    -0.000002
pH     -> Gversion -0.000075
Gversion -> pH      -0.002728
Gversion -> Temp    -0.007628
Strain -> Supp    -0.009867
Gtype  -> Strain  -0.010235
Agit   -> OD      -0.010569
Temp   -> Technique -0.011335
Technique -> Substrain -0.011953
Substrain -> OD      -0.016511
pH     -> Temp    -0.018176
Med    -> Gversion -0.020932
O      -> Temp    -0.022641
Technique -> Anti    -0.023262
Air    -> pH      -0.024461
OD     -> Strain  -0.026366
Supp   -> Substrain -0.034934
pH     -> Agit    -0.035498
Air    -> Substrain -0.039173
Agit   -> O       -0.043714
Vess   -> O       -0.049418
pH     -> O       -0.052313
Gtype  -> Vess    -0.055061
OD     -> pH      -0.055365
Agit   -> Technique -0.078066
Technique -> Temp    -0.082641
Supp   -> Agit    -0.088366
pH     -> OD      -0.092913
Substrain -> Supp    -0.093028
Phase  -> Air     -0.094978
Gtype  -> Agit    -0.099109
Temp   -> OD      -0.102318
Strain -> Gtype   -0.104406
Anti   -> Phase   -0.104539
Air    -> Gtype   -0.107881
Gversion -> Med     -0.108523
Temp   -> Supp    -0.110549
O      -> Agit    -0.114235
Technique -> Agit    -0.115260
Anti   -> pH      -0.120989
Air    -> Gversion -0.121297
Temp   -> Gtype   -0.135561
Anti   -> Technique -0.140434
pH     -> Air     -0.141509
Med    -> pH      -0.142590
Med    -> Gtype   -0.144065
O      -> Anti    -0.146440
Anti   -> Air     -0.156256
Med    -> OD      -0.158372
Gversion -> OD      -0.158845
Gversion -> Technique -0.160988
Anti   -> OD      -0.163088
Supp   -> Vess    -0.164979
OD     -> Gtype   -0.176955
Phase  -> Gtype   -0.191689
Phase  -> Temp    -0.194144
Agit   -> Supp    -0.200483
O      -> Phase   -0.206790
Supp   -> Phase   -0.210206
Phase  -> Anti    -0.221112
Gtype  -> Substrain -0.228101
Med    -> Temp    -0.236648
Temp   -> Air     -0.238043
Supp   -> O       -0.241915
OD     -> Temp    -0.245458
Gversion -> Gtype   -0.247560
Gversion -> Air     -0.268614
O      -> Gversion -0.272715
Supp   -> pH      -0.280025
Med    -> Air     -0.291138
pH     -> Supp    -0.297132
Supp   -> Technique -0.309455
Technique -> Gversion -0.321902
Technique -> Med     -0.356739
Supp   -> Gversion -0.372193
OD     -> Med     -0.378919
Gversion -> Supp    -0.384450
Supp   -> Anti    -0.387274
OD     -> Technique -0.399842
Supp   -> Temp    -0.402477
Supp   -> Air     -0.403031
Anti   -> O       -0.408162
OD     -> O       -0.408221
Air    -> Technique -0.409978
Med    -> Technique -0.434261
O      -> Substrain -0.435775
Air    -> OD      -0.436358
Gtype  -> Gversion -0.442345
Technique -> Supp    -0.448477
Med    -> O       -0.458825
Agit   -> Air     -0.461411
Phase  -> Supp    -0.467630
Supp   -> OD      -0.468657
Anti   -> Supp    -0.474714
Anti   -> Gtype   -0.485559
Gtype  -> Phase   -0.493622
Gtype  -> OD      -0.525526
Gtype  -> Temp    -0.531770
Gtype  -> Technique -0.532609
Air    -> Temp    -0.540386
Supp   -> Gtype   -0.550290
Anti   -> Med     -0.550739
Air    -> Med     -0.552443
OD     -> Supp    -0.568760
Gversion -> O       -0.596824
Phase  -> Technique -0.622034
Air    -> Phase   -0.643467
Phase  -> O       -0.699828
Air    -> Supp    -0.705373
Phase  -> OD      -0.710282
Technique -> OD      -0.748315
Air    -> Agit    -0.757188
Technique -> Gtype   -0.831136
Phase  -> Med     -0.844523
Anti   -> Temp    -0.880771
Gtype  -> Med     -0.934989
Gtype  -> Anti    -0.954760
O      -> OD      -1.022942
OD     -> Air     -1.052641
Gtype  -> O       -1.082747
Technique -> O       -1.119511
Temp   -> Med     -1.164100
Substrain -> O       -1.352897
O      -> Med     -1.413267
O      -> Air     -1.475306
Technique -> pH      -1.520967
Supp   -> Med     -1.757922
Med    -> Supp    -1.915118


Top unlikely transitions:
Temp   -> Temp    4.892467
Med    -> Med     4.717507
Supp   -> Supp    4.711443
Gtype  -> Gtype   4.543168
Anti   -> Anti    4.521275
Phase  -> Phase   4.182195
Air    -> Air     4.085931
O      -> O       4.083540
OD     -> OD      4.073316
Gversion -> Gversion 3.681981
Technique -> Technique 2.774775
pH     -> pH      2.740322
Agit   -> Agit    1.987065
Substrain -> Gtype   1.332628
Technique -> Air     0.705506
O      -> Technique 0.696502
O      -> Gtype   0.681950
Gtype  -> Supp    0.600279
O      -> Supp    0.491907
Strain -> O       0.266413
Air    -> O       0.186348
Gtype  -> pH      0.138050
O      -> pH      0.133771
Temp   -> O       0.040415
Gtype  -> Air     0.027552
O      -> Strain  0.007581
Med    -> Agit    -0.000002
pH     -> Gversion -0.000075
Gversion -> pH      -0.002728
Gversion -> Temp    -0.007628
Strain -> Supp    -0.009867
Gtype  -> Strain  -0.010235
Agit   -> OD      -0.010569
Temp   -> Technique -0.011335
Technique -> Substrain -0.011953
Substrain -> OD      -0.016511
pH     -> Temp    -0.018176
Med    -> Gversion -0.020932
O      -> Temp    -0.022641
Technique -> Anti    -0.023262
Air    -> pH      -0.024461
OD     -> Strain  -0.026366
Supp   -> Substrain -0.034934
pH     -> Agit    -0.035498
Air    -> Substrain -0.039173
Agit   -> O       -0.043714
Vess   -> O       -0.049418
pH     -> O       -0.052313
Gtype  -> Vess    -0.055061
OD     -> pH      -0.055365
Agit   -> Technique -0.078066
Technique -> Temp    -0.082641
Supp   -> Agit    -0.088366
pH     -> OD      -0.092913
Substrain -> Supp    -0.093028
Phase  -> Air     -0.094978
Gtype  -> Agit    -0.099109
Temp   -> OD      -0.102318
Strain -> Gtype   -0.104406
Anti   -> Phase   -0.104539
Air    -> Gtype   -0.107881
Gversion -> Med     -0.108523
Temp   -> Supp    -0.110549
O      -> Agit    -0.114235
Technique -> Agit    -0.115260
Anti   -> pH      -0.120989
Air    -> Gversion -0.121297
Temp   -> Gtype   -0.135561
Anti   -> Technique -0.140434
pH     -> Air     -0.141509
Med    -> pH      -0.142590
Med    -> Gtype   -0.144065
O      -> Anti    -0.146440
Anti   -> Air     -0.156256
Med    -> OD      -0.158372
Gversion -> OD      -0.158845
Gversion -> Technique -0.160988
Anti   -> OD      -0.163088
Supp   -> Vess    -0.164979
OD     -> Gtype   -0.176955
Phase  -> Gtype   -0.191689
Phase  -> Temp    -0.194144
Agit   -> Supp    -0.200483
O      -> Phase   -0.206790
Supp   -> Phase   -0.210206
Phase  -> Anti    -0.221112
Gtype  -> Substrain -0.228101
Med    -> Temp    -0.236648
Temp   -> Air     -0.238043
Supp   -> O       -0.241915
OD     -> Temp    -0.245458
Gversion -> Gtype   -0.247560
Gversion -> Air     -0.268614
O      -> Gversion -0.272715
Supp   -> pH      -0.280025
Med    -> Air     -0.291138
pH     -> Supp    -0.297132
Supp   -> Technique -0.309455
Technique -> Gversion -0.321902
Technique -> Med     -0.356739
Supp   -> Gversion -0.372193
OD     -> Med     -0.378919
Gversion -> Supp    -0.384450
Supp   -> Anti    -0.387274
OD     -> Technique -0.399842
Supp   -> Temp    -0.402477
Supp   -> Air     -0.403031
Anti   -> O       -0.408162
OD     -> O       -0.408221
Air    -> Technique -0.409978
Med    -> Technique -0.434261
O      -> Substrain -0.435775
Air    -> OD      -0.436358
Gtype  -> Gversion -0.442345
Technique -> Supp    -0.448477
Med    -> O       -0.458825
Agit   -> Air     -0.461411
Phase  -> Supp    -0.467630
Supp   -> OD      -0.468657
Anti   -> Supp    -0.474714
Anti   -> Gtype   -0.485559
Gtype  -> Phase   -0.493622
Gtype  -> OD      -0.525526
Gtype  -> Temp    -0.531770
Gtype  -> Technique -0.532609
Air    -> Temp    -0.540386
Supp   -> Gtype   -0.550290
Anti   -> Med     -0.550739
Air    -> Med     -0.552443
OD     -> Supp    -0.568760
Gversion -> O       -0.596824
Phase  -> Technique -0.622034
Air    -> Phase   -0.643467
Phase  -> O       -0.699828
Air    -> Supp    -0.705373
Phase  -> OD      -0.710282
Technique -> OD      -0.748315
Air    -> Agit    -0.757188
Technique -> Gtype   -0.831136
Phase  -> Med     -0.844523
Anti   -> Temp    -0.880771
Gtype  -> Med     -0.934989
Gtype  -> Anti    -0.954760
O      -> OD      -1.022942
OD     -> Air     -1.052641
Gtype  -> O       -1.082747
Technique -> O       -1.119511
Temp   -> Med     -1.164100
Substrain -> O       -1.352897
O      -> Med     -1.413267
O      -> Air     -1.475306
Technique -> pH      -1.520967
Supp   -> Med     -1.757922
Med    -> Supp    -1.915118


Top positive:
5.140629 O        b'lemma:_'
5.140629 O        b'word:_'
3.937166 Air      b'lemma:anaerobic'
3.568215 Gtype    b'word:WT'
3.440242 Gtype    b'hGreek'
3.423972 O        b'word:Cra'
3.119818 Gtype    b'lemma:wt'
3.078152 Technique b'word:ChIPSeq'
3.031862 Supp     b'lemma:Iron'
3.031862 Supp     b'word:Iron'
3.031862 Supp     b'+1:word:Deficient'
2.987014 Air      b'postag:RB'
2.928350 Supp     b'lemma:pq'
2.928350 Supp     b'word:PQ'
2.923579 Air      b'word:Aerobic'
2.909350 Air      b'word:Anaerobic'
2.889005 O        b'postag::'
2.812594 Supp     b'lemma:nh4cl'
2.775223 Supp     b'-1:word:Cra'
2.760671 Technique b'lemma:chipseq'
2.615703 Technique b'word:ChIP-exo'
2.583612 Supp     b'lemma:2h'
2.583612 Supp     b'-1:lemma:additional'
2.583612 Supp     b'word:2h'
2.583612 Supp     b'-1:word:additional'
2.552056 O        b'lemma:Cra'
2.515904 Phase    b'lemma:stationary'
2.515904 Phase    b'word:stationary'
2.515904 Phase    b'lemma:exponential'
2.515904 Phase    b'word:exponential'
2.489479 Supp     b'lemma:glucose'
2.489479 Supp     b'word:glucose'
2.488915 O        b'postag:VBG'
2.448928 Air      b'lemma:aerobically'
2.448928 Air      b'word:aerobically'
2.442888 O        b'lemma:-'
2.442888 O        b'word:-'
2.395551 Supp     b'+1:lemma:\xc2\xb5m'
2.395551 Supp     b'+1:word:\xc2\xb5M'
2.369056 O        b'lemma:.'
2.369056 O        b'postag:.'
2.369056 O        b'word:.'
2.351768 O        b'-1:word:tag'
2.325722 O        b'-1:lemma:tag'
2.277453 Phase    b'postag:NN'
2.276744 Gversion b'lemma:asm584v2'
2.276744 Gversion b'word:ASM584v2'
2.271725 Air      b'-1:lemma:-'
2.271725 Air      b'-1:word:-'
2.248125 Supp     b'lemma:arginine'
2.242050 Strain   b'lemma:k-12'
2.242050 Strain   b'word:K-12'
2.227834 Med      b'word:LB'
2.222469 Gtype    b'-1:lemma:\xe2\x88\x86'
2.222469 Gtype    b'-1:word:\xe2\x88\x86'
2.153832 O        b'-1:lemma:lb'
2.148975 Technique b'lemma:ChIP-exo'
2.146145 Med      b'lemma:LB'
2.144768 Gversion b'word:ChIP-Seq'
2.140705 Med      b'lemma:MOPS'
2.140705 Med      b'word:MOPS'
2.133268 O        b'lemma:chip-fnr'
2.133268 O        b'word:chip-Fnr'
2.130719 O        b'lemma:chip-arca'
2.130719 O        b'word:chip-ArcA'
2.127193 O        b'lemma:1'
2.127193 O        b'word:1'
2.118620 Air      b'lemma:aerobic'
2.114236 Gtype    b'lemma:type'
2.114236 Gtype    b'word:type'
2.110279 Gtype    b'lemma:arca8myc'
2.110279 Gtype    b'word:ArcA8myc'
2.108409 Air      b'postag:JJ'
2.056201 Supp     b'+1:lemma:Deficient'
2.050725 O        b'+1:word:were'
2.005254 Air      b'word:anaerobic'
2.003501 O        b'+1:postag:RB'
1.985738 Air      b'-1:lemma:ChIP-Seq'
1.985738 Air      b'-1:word:ChIP-Seq'
1.974468 O        b'-1:lemma:0.3'
1.974468 O        b'-1:word:0.3'
1.970054 O        b'lemma:b'
1.970054 O        b'word:B'
1.953675 O        b'lemma:at'
1.945536 Supp     b'lemma:acetate'
1.945536 Supp     b'word:acetate'
1.944835 Supp     b'lemma:no3'
1.944835 Supp     b'word:NO3'
1.944588 O        b'lemma:with'
1.944588 O        b'word:with'
1.937340 O        b'lemma:rep2'
1.937340 O        b'word:rep2'
1.937340 O        b'lemma:rep1'
1.937340 O        b'word:rep1'
1.935249 Supp     b'-1:lemma:Cra'
1.916257 O        b'-1:word:Anaerobic'
1.915903 O        b'lemma:2'
1.915903 O        b'word:2'
1.910828 Air      b'lemma:anaeroibc'
1.910828 Air      b'word:Anaeroibc'
1.902401 Gtype    b'+1:lemma:type'
1.902401 Gtype    b'+1:word:type'
1.896464 Gtype    b'lemma:wildtype'
1.891531 Vess     b'lemma:flask'
1.891531 Vess     b'-1:lemma:warm'
1.891531 Vess     b'word:flask'
1.891531 Vess     b'-1:word:warmed'
1.884520 Technique b'lemma:rnaseq'
1.884520 Technique b'word:RNASeq'
1.884188 Phase    b'lemma:mid-log'
1.884188 Phase    b'word:mid-log'
1.883299 Gversion b'lemma:chip-seq'
1.864746 Substrain b'lemma:mg1655'
1.864746 Substrain b'word:MG1655'
1.863923 Supp     b'lemma:rifampicin'
1.863923 Supp     b'word:rifampicin'
1.851051 O        b'-1:lemma:glucose'
1.851051 O        b'-1:word:glucose'
1.846594 O        b'lemma:rpob'
1.846594 O        b'word:RpoB'
1.844571 O        b'lemma:3'
1.844571 O        b'word:3'
1.841594 Supp     b'lemma:nacl'
1.841594 Supp     b'word:NaCl'
1.817925 O        b'word:A'
1.816663 O        b'postag:IN'
1.814995 O        b'-1:postag:NNS'
1.796245 Substrain b'lemma:mg1655star'
1.796245 Substrain b'word:MG1655star'
1.793285 Gtype    b'lemma:pk4854'
1.793285 Gtype    b'word:PK4854'
1.786509 Supp     b'lemma:Fe'
1.786509 Supp     b'word:Fe'
1.786384 O        b'word:OmpR'
1.780367 Technique b'word:ChIP-Seq'
1.780251 O        b'+1:lemma:pq'
1.780251 O        b'+1:word:PQ'
1.772038 Supp     b'lemma:dpd'
1.772038 Supp     b'word:DPD'
1.757489 Anti     b'lemma:none'
1.757489 Anti     b'word:none'
1.755962 O        b'lemma:CEL'
1.755962 O        b'word:CEL'
1.752980 Gtype    b'lemma:dfnr'
1.752980 Gtype    b'word:dFNR'
1.740521 Supp     b'lemma:Adenine'
1.740521 Supp     b'word:Adenine'
1.737353 O        b'lemma:\xcf\x8332'
1.737353 O        b'word:\xcf\x8332'
1.727594 Supp     b'lemma:Leu'
1.727594 Supp     b'word:Leu'
1.714096 Med      b'+1:lemma:0.4'
1.714096 Med      b'+1:word:0.4'
1.708691 pH       b'+1:postag:CD'
1.692807 Anti     b'lemma:seqa'
1.692807 Anti     b'word:SeqA'
1.687589 Gtype    b'lemma:WT'
1.667335 O        b'word:Lrp'
1.664584 Gtype    b'lemma:fnr8myc'
1.664584 Gtype    b'word:Fnr8myc'
1.648933 Med      b'-1:word:ml'
1.648210 Technique b'lemma:rna-seq'
1.645402 Med      b'-1:lemma:ml'
1.643457 Technique b'hUpper'
1.640129 Gtype    b'lemma:\xe2\x88\x86'
1.640129 Gtype    b'word:\xe2\x88\x86'
1.639320 Temp     b'-1:lemma:37'
1.639320 Temp     b'-1:word:37'
1.636191 O        b'+1:lemma:wt'
1.634618 O        b'+1:lemma:od600'
1.634618 O        b'+1:word:OD600'
1.619466 Anti     b'lemma:\xcf\x8332'
1.619466 Anti     b'word:\xcf\x8332'
1.611381 O        b'+1:word:WT'
1.590286 O        b'lemma:for'
1.579304 O        b'+1:lemma:250'
1.579304 O        b'+1:word:250'
1.574117 Strain   b'+1:lemma:substr'
1.574117 Strain   b'+1:word:substr'
1.568308 Vess     b'-1:postag:VBN'
1.566846 Supp     b'lemma:iptg'
1.566846 Supp     b'word:IPTG'
1.560511 O        b'+1:lemma:k-12'
1.560511 O        b'+1:word:K-12'
1.560310 pH       b'lemma:ph5'
1.560310 pH       b'+1:lemma:.5'
1.560310 pH       b'word:pH5'
1.560310 pH       b'+1:word:.5'
1.559281 O        b'word:C'
1.556063 Temp     b'+1:lemma:\xc2\xb0c'
1.556063 Temp     b'+1:word:\xc2\xb0C'
1.553893 Gtype    b'lemma:delta-fnr'
1.553893 Gtype    b'word:delta-fnr'
1.552031 Gtype    b'lemma:\xce\xb4fur'
1.552031 Gtype    b'word:\xce\x94fur'
1.540647 O        b'lemma:ompr'
1.531300 Agit     b'+1:lemma:rpm'
1.531300 Agit     b'+1:word:rpm'
1.527433 O        b'lemma::'
1.527433 O        b'word::'
1.517082 O        b'-1:word:ChIP-exo'
1.502803 Gtype    b'lemma:deltaseqa'
1.502803 Gtype    b'-1:lemma:old'
1.502803 Gtype    b'word:deltaSeqA'
1.502803 Gtype    b'-1:word:old'
1.501791 Med      b'lemma:m63'
1.501791 Med      b'word:M63'
1.501176 Supp     b'-1:word:OmpR'
1.501119 O        b'lemma:argr'
1.501119 O        b'word:ArgR'
1.499711 Temp     b'lemma:43'
1.499711 Temp     b'word:43'
1.497081 Supp     b'-1:lemma:vol'
1.497081 Supp     b'-1:word:vol'
1.495321 Med      b'+1:postag:CD'
1.493436 O        b'+1:postag:VBN'
1.480859 Med      b'postag:NNP'
1.479784 Gtype    b'hUpper'
1.478804 Supp     b'-1:lemma:+'
1.478804 Supp     b'-1:word:+'
1.476676 Supp     b'+1:word:hours'
1.474859 O        b'lemma:genotype/variation'
1.474859 O        b'word:genotype/variation'
1.468300 Supp     b'lemma:Trp'
1.468300 Supp     b'word:Trp'
1.452963 Agit     b'lemma:rpm'
1.452963 Agit     b'word:rpm'
1.449047 O        b'lemma:purr'
1.449047 O        b'word:PurR'
1.445401 O        b'-1:lemma:ChIP-exo'
1.443985 Supp     b'word:NH4Cl'
1.443806 O        b'-1:word:Aerobic'
1.443475 Gtype    b'+1:postag::'
1.441009 O        b'+1:lemma:43'
1.441009 O        b'+1:word:43'
1.439850 Med      b'lemma:media'
1.439850 Med      b'word:media'
1.437391 Med      b'+1:lemma:2.0'
1.437391 Med      b'+1:word:2.0'
1.432088 Med      b'lemma:medium'
1.432088 Med      b'word:medium'
1.422826 Supp     b'-1:lemma:ompr'
1.418962 O        b'lemma:2-3'
1.418962 O        b'word:2-3'
1.415552 Agit     b'-1:lemma:250'
1.415552 Agit     b'-1:word:250'
1.410090 Gtype    b'-1:lemma:nsrr'
1.410090 Gtype    b'+1:lemma:flagtag'
1.410090 Gtype    b'-1:word:NsrR'
1.410090 Gtype    b'+1:word:Flagtag'
1.405481 Supp     b'+1:lemma:1'
1.405481 Supp     b'+1:word:1'
1.403757 Temp     b'-1:lemma:43'
1.403757 Temp     b'-1:word:43'
1.399614 Med      b'-1:lemma:LB'
1.398404 O        b'postag:VBN'
1.397603 OD       b'lemma:od450'
1.397603 OD       b'word:OD450'
1.397603 OD       b'-1:word:At'
1.378116 Supp     b'lemma:leucine'
1.378116 Supp     b'word:leucine'
1.367425 Air      b'-1:lemma:co2'
1.367425 Air      b'-1:word:CO2'
1.363848 O        b'+1:lemma:0.2'
1.363848 O        b'+1:word:0.2'
1.363397 O        b'-1:lemma:phase'
1.363397 O        b'-1:word:phase'
1.362534 O        b'lemma:soxr'
1.362534 O        b'word:SoxR'
1.362534 O        b'lemma:soxs'
1.362534 O        b'word:SoxS'
1.355585 Gversion b'lemma:nc'
1.355585 Gversion b'word:NC'
1.354125 Med      b'lemma:glucose'
1.354125 Med      b'word:glucose'
1.349950 Temp     b'lemma:\xc2\xb0c'
1.349950 Temp     b'word:\xc2\xb0C'
1.348265 Supp     b'+1:lemma:2'
1.348265 Supp     b'+1:word:2'
1.341309 Anti     b'hGreek'
1.338752 Technique b'-1:lemma:_'
1.338752 Technique b'-1:word:_'
1.333293 O        b'symb'
1.331247 O        b'+1:word:ChIP-Seq'
1.324546 O        b'-1:lemma:into'
1.324546 O        b'-1:word:into'
1.322055 OD       b'+1:postag:IN'
1.321907 Gversion b'lemma:000913'
1.321907 Gversion b'word:000913'
1.321808 Technique b'-1:lemma:chip-exo'
1.318272 Gversion b'lemma:u00096'
1.318272 Gversion b'+1:lemma:.2'
1.318272 Gversion b'word:U00096'
1.318272 Gversion b'+1:word:.2'
1.314140 Agit     b'lemma:250'
1.314140 Agit     b'word:250'
1.311741 Gversion b'postag:NN'
1.305652 Substrain b'-1:lemma:.'
1.305652 Substrain b'-1:postag:.'
1.305652 Substrain b'-1:word:.'
1.303586 Supp     b'word:Arginine'
1.302053 Supp     b'+1:lemma:deficient'
1.301568 OD       b'-1:lemma:at'
1.300230 Temp     b'-1:word:sample'
1.294983 Gversion b'-1:lemma:nc'
1.294983 Gversion b'+1:lemma:000913'
1.294983 Gversion b'-1:word:NC'
1.294983 Gversion b'+1:word:000913'
1.292402 O        b'-1:lemma:pq'
1.292402 O        b'-1:word:PQ'
1.288911 Gtype    b'lemma:crp'
1.288911 Gtype    b'word:crp'
1.288427 Substrain b'+1:lemma:phtpg'
1.288427 Substrain b'+1:word:PhtpG'
1.286494 O        b'lemma:~'
1.286494 O        b'word:~'
1.285369 Supp     b'lemma:fructose'
1.285369 Supp     b'word:fructose'
1.284617 O        b'lemma:gadx'
1.283183 Supp     b'-1:lemma:with'
1.283183 Supp     b'-1:word:with'
1.280621 O        b'+1:lemma:coli'
1.280621 O        b'+1:word:coli'
1.275842 Gtype    b'lemma:wild-type'
1.274821 Temp     b'-1:lemma:sample'
1.273434 Air      b'-1:postag:CD'
1.273402 Anti     b'+1:lemma:antibody'
1.273402 Anti     b'+1:word:antibody'
1.270553 Temp     b'lemma:37'
1.270553 Temp     b'word:37'
1.265607 O        b'lemma:or'
1.265607 O        b'word:or'
1.260021 Supp     b'+1:lemma:mm'
1.260021 Supp     b'+1:word:mM'
1.255459 OD       b'-1:lemma:~'
1.255459 OD       b'-1:word:~'
1.254587 Technique b'word:RNA-Seq'
1.252786 O        b'lemma:a'
1.251398 O        b'word:for'
1.250180 Gtype    b'-1:lemma:_'
1.250180 Gtype    b'-1:word:_'
1.240843 Vess     b'+1:lemma:at'
1.240843 Vess     b'+1:word:at'
1.237830 OD       b'lemma:0.3'
1.237830 OD       b'word:0.3'
1.234816 Med      b'-1:lemma:fresh'
1.234816 Med      b'-1:word:fresh'
1.231317 Phase    b'-1:lemma:mid-log'
1.231317 Phase    b'-1:word:mid-log'
1.229506 Gtype    b'lemma:\xce\xb4cra'
1.226788 Gtype    b'+1:lemma:pq'
1.226788 Gtype    b'+1:word:PQ'
1.220631 Supp     b'+1:lemma:iptg'
1.220631 Supp     b'+1:word:IPTG'
1.218378 Technique b'-1:lemma:input'
1.218378 Technique b'-1:word:Input'
1.217594 Supp     b'-1:lemma:without'
1.217594 Supp     b'-1:word:without'
1.216291 O        b'word:GadX'
1.214608 Temp     b'-1:lemma:\xcf\x8332'
1.214608 Temp     b'-1:word:\xcf\x8332'
1.207292 O        b'word:tagged'
1.206296 Supp     b'+1:lemma:hour'
1.204771 Med      b'+1:lemma:-lrb-'
1.204771 Med      b'+1:word:-LRB-'
1.202540 Gtype    b'word:\xce\x94cra'
1.200334 Gtype    b'word:wt'
1.198953 Med      b'+1:postag:-LRB-'
1.196761 Supp     b'postag:NNP'
1.192045 Technique b'+1:postag:NN'
1.191853 pH       b'+1:lemma:5.5'
1.191853 pH       b'+1:word:5.5'
1.191791 O        b'lemma:affyexp'
1.191791 O        b'word:affyexp'
1.191048 Med      b'+1:lemma:+'
1.191048 Med      b'+1:word:+'
1.190972 Technique b'hLower'
1.189111 O        b'-1:lemma:media'
1.189111 O        b'-1:word:media'
1.182023 Gtype    b'postag:JJ'
1.178090 Gtype    b'hLower'
1.177200 OD       b'-1:lemma:od450'
1.177200 OD       b'-1:word:OD450'
1.176733 O        b'+1:lemma:mid-log'
1.176733 O        b'+1:word:mid-log'
1.174404 O        b'+1:lemma:ph5'
1.174404 O        b'+1:word:pH5'
1.172951 O        b'-1:lemma:nh4cl'
1.170513 O        b'+1:postag:VBZ'
1.168096 OD       b'-1:postag:IN'
1.167180 O        b'lemma:chip'
1.166791 Gversion b'lemma:.2'
1.166791 Gversion b'-1:lemma:u00096'
1.166791 Gversion b'word:.2'
1.166791 Gversion b'-1:word:U00096'
1.160999 Air      b'-1:postag:NN'
1.156758 O        b'-1:lemma:type'
1.156758 O        b'-1:word:type'
1.155622 O        b'+1:postag:NNP'
1.153746 Phase    b'-1:lemma:until'
1.153746 Phase    b'-1:word:until'
1.150594 O        b'-1:lemma:genotype/variation'
1.150594 O        b'-1:word:genotype/variation'
1.144941 Supp     b'+1:lemma:_'
1.144941 Supp     b'+1:word:_'
1.142789 O        b'lemma:harbor'
1.142789 O        b'word:harboring'
1.142064 O        b'-1:lemma:wt'
1.140253 Supp     b'word:NH4CL'
1.129686 Gtype    b'+1:lemma:_'
1.129686 Gtype    b'+1:word:_'
1.127925 Med      b'-1:lemma:in'
1.127925 Med      b'-1:word:in'
1.127198 Supp     b'+1:word:was'
1.126671 O        b'lemma:trpr'
1.126671 O        b'word:TrpR'
1.125469 Supp     b'-1:postag:CC'
1.122636 Supp     b'-1:postag:IN'
1.122368 Strain   b'-1:lemma:.'
1.122368 Strain   b'-1:postag:.'
1.122368 Strain   b'-1:word:.'
1.119989 O        b'+1:lemma:read'
1.118430 O        b'-1:lemma:nacl'
1.118430 O        b'-1:word:NaCl'
1.115062 O        b'+1:word:reads'
1.113474 Technique b'+1:lemma:rna-seq'
1.113474 Technique b'+1:word:RNA-seq'
1.111309 Gversion b'lemma:_'
1.111309 Gversion b'word:_'
1.105708 Gtype    b'-1:lemma:from'
1.105708 Gtype    b'-1:word:from'
1.102799 Gtype    b'-1:lemma:wild'
1.102799 Gtype    b'-1:word:wild'
1.094248 O        b'postag:CC'
1.092552 O        b'-1:lemma:\xc2\xb0c'
1.092552 O        b'-1:word:\xc2\xb0C'
1.090732 O        b'+1:word:wash'
1.090716 O        b'-1:lemma:acetate'
1.090716 O        b'-1:word:acetate'
1.089598 Supp     b'-1:postag:CD'
1.081728 Gtype    b'-1:postag:VBP'
1.080465 O        b'-1:word:fnr'
1.079002 Gtype    b'+1:lemma:cra'
1.079002 Gtype    b'+1:word:cra'
1.077518 O        b'lemma:s'
1.077518 O        b'word:S'
1.073893 O        b'+1:lemma:fnr-8myc'
1.073893 O        b'+1:word:Fnr-8myc'
1.072297 Air      b'lemma:Anaerobic'
1.069279 O        b'+1:lemma:30'
1.069279 O        b'+1:word:30'
1.061598 Gtype    b'lemma:ptac'
1.061598 Gtype    b'word:Ptac'
1.059042 Gtype    b'lemma:delta-arca'
1.059042 Gtype    b'word:delta-arcA'
1.058969 Gtype    b'+1:lemma:control'
1.058969 Gtype    b'+1:word:control'
1.051075 Technique b'+1:word:GadX'
1.050382 Technique b'+1:lemma:gadx'
1.048071 Anti     b'lemma:anti-rpob'
1.048071 Anti     b'word:anti-RpoB'
1.044606 Supp     b'-1:lemma:sodium'
1.044606 Supp     b'-1:word:Sodium'
1.038894 O        b'+1:lemma:\xe2\x88\x86'
1.038894 O        b'+1:word:\xe2\x88\x86'
1.036539 pH       b'-1:postag:NN'
1.035645 O        b'-1:lemma:-80'
1.035645 O        b'-1:word:-80'
1.035283 pH       b'lemma:5.5'
1.035283 pH       b'word:5.5'
1.035246 Gtype    b'-1:lemma:rpob'
1.035246 Gtype    b'-1:word:RpoB'
1.034261 O        b'lemma:+'
1.034261 O        b'word:+'
1.032100 O        b'lemma:culture'
1.030309 O        b'-1:lemma:anaerobic'
1.029614 O        b'lemma:Lrp'
1.026952 O        b'lemma:Nac'
1.026952 O        b'word:Nac'
1.025660 pH       b'-1:lemma:at'
1.023922 O        b'lemma:oxyr'
1.023922 O        b'word:OxyR'
1.021179 O        b'-1:lemma:stpa'
1.021179 O        b'-1:word:stpA'
1.021035 pH       b'-1:word:at'
1.017965 O        b'-1:lemma:arginine'
1.017625 Med      b'lemma:minimal'
1.017625 Med      b'word:minimal'
1.014509 Gtype    b'word:cra'
1.013447 O        b'-1:lemma:shake'
1.013447 O        b'-1:word:shaking'
1.013421 O        b'word:at'
1.010763 Gtype    b'lemma:wild'
1.010763 Gtype    b'word:wild'
1.010722 Supp     b'-1:lemma:contain'
1.010722 Supp     b'-1:word:containing'
1.008854 Gversion b'+1:lemma:genome'
1.008854 Gversion b'+1:word:genome'
1.005462 Gversion b'+1:postag:CD'
1.001558 O        b'lemma:Genome'


Top negative:
-0.066288 O        b'+1:lemma:-lcb-'
-0.066288 O        b'+1:word:-LCB-'
-0.069014 Gtype    b'+1:postag:NNS'
-0.069949 O        b'+1:lemma:deletion'
-0.069949 O        b'+1:word:deletion'
-0.070350 OD       b'lemma:='
-0.070350 OD       b'word:='
-0.073715 O        b'lemma:70'
-0.073715 O        b'word:70'
-0.075326 O        b'+1:postag:VBG'
-0.076843 O        b'word:fnr'
-0.078519 Anti     b'-1:postag:CD'
-0.079208 O        b'-1:lemma:~'
-0.079208 O        b'-1:word:~'
-0.080267 Supp     b'postag:NNS'
-0.080938 O        b'+1:lemma:co2'
-0.080938 O        b'+1:word:CO2'
-0.085141 O        b'-1:lemma:iptg'
-0.085141 O        b'-1:word:IPTG'
-0.085213 O        b'isGreek'
-0.087595 Anti     b'hUpper'
-0.090814 O        b'-1:lemma:final'
-0.090814 O        b'-1:word:final'
-0.092219 O        b'-1:lemma:mm'
-0.092219 O        b'-1:word:mM'
-0.092508 Supp     b'lemma:,'
-0.092508 Supp     b'postag:,'
-0.092508 Supp     b'word:,'
-0.095889 O        b'-1:lemma:cra'
-0.096101 O        b'+1:lemma:1/100'
-0.096101 O        b'+1:word:1/100'
-0.096284 O        b'+1:word:Aerobic'
-0.096582 O        b'+1:lemma:mutant'
-0.096894 Phase    b'-1:word:at'
-0.098727 O        b'word:Purified'
-0.098727 O        b'-1:word:Affinity'
-0.100197 Supp     b'-1:lemma:in'
-0.100197 Supp     b'-1:word:in'
-0.100891 Gversion b'hGreek'
-0.102590 O        b'-1:lemma:-'
-0.102590 O        b'-1:word:-'
-0.102711 O        b'-1:word:for'
-0.102812 O        b'+1:word:a'
-0.104188 Phase    b'-1:lemma:at'
-0.104889 O        b'lemma:min'
-0.104889 O        b'word:min'
-0.105748 O        b'+1:lemma:delta'
-0.105748 O        b'+1:word:delta'
-0.106533 O        b'lemma:paraquat'
-0.106533 O        b'word:paraquat'
-0.108043 O        b'-1:postag:VBG'
-0.108470 O        b'+1:lemma:until'
-0.108470 O        b'+1:word:until'
-0.109771 Air      b'-1:lemma::'
-0.109771 Air      b'-1:word::'
-0.114567 Med      b'hGreek'
-0.114677 O        b'-1:word:Purified'
-0.118331 O        b'-1:lemma:gade'
-0.121543 O        b'-1:lemma:affinity'
-0.121864 Substrain b'isNumber'
-0.121969 O        b'+1:lemma:5'
-0.121969 O        b'+1:word:5'
-0.122632 O        b'-1:lemma:gadx'
-0.122808 Agit     b'postag:CD'
-0.124469 O        b'-1:lemma:gadw'
-0.125566 pH       b'symb'
-0.125725 Air      b'symb'
-0.127852 Supp     b'-1:lemma:the'
-0.129625 O        b'-1:lemma:um'
-0.129625 O        b'+1:lemma:paraquat'
-0.129625 O        b'-1:word:uM'
-0.129625 O        b'+1:word:paraquat'
-0.132431 Supp     b'-1:word:the'
-0.134603 O        b'+1:lemma:pahse'
-0.134603 O        b'+1:word:pahse'
-0.134764 Technique b'+1:lemma:-rrb-'
-0.134764 Technique b'+1:word:-RRB-'
-0.134992 O        b'lemma:acetate'
-0.134992 O        b'word:acetate'
-0.138542 Technique b'+1:postag:-RRB-'
-0.140786 O        b'lemma:mutant'
-0.142445 Supp     b'lemma:and'
-0.142445 Supp     b'word:and'
-0.143322 O        b'lemma:deletion'
-0.143322 O        b'word:deletion'
-0.144713 Strain   b'isLower'
-0.146324 Agit     b'hLower'
-0.148196 O        b'lemma:o2'
-0.148196 O        b'word:O2'
-0.151766 Supp     b'postag:IN'
-0.152099 O        b'+1:postag:DT'
-0.154120 Med      b'+1:postag:NN'
-0.155369 Vess     b'hLower'
-0.155550 Vess     b'isNumber'
-0.156076 O        b'lemma:n2'
-0.156076 O        b'word:N2'
-0.156804 O        b'+1:lemma:-lrb-'
-0.156804 O        b'+1:word:-LRB-'
-0.157058 O        b'+1:lemma:~'
-0.157058 O        b'+1:word:~'
-0.158455 O        b'-1:lemma:\xc3\x9f'
-0.158455 O        b'-1:word:\xc3\x9f'
-0.159945 O        b'-1:lemma:deletion'
-0.159945 O        b'-1:word:deletion'
-0.163359 Med      b'-1:lemma:MOPS'
-0.163359 Med      b'-1:word:MOPS'
-0.163870 Air      b'postag:CD'
-0.165516 O        b'+1:postag:CD'
-0.166095 O        b'word:purified'
-0.166443 O        b'lemma:1m'
-0.166443 O        b'word:1M'
-0.167434 O        b'+1:lemma:rna'
-0.167434 O        b'+1:word:RNA'
-0.168216 O        b'+1:lemma:95'
-0.168216 O        b'+1:word:95'
-0.168495 Gtype    b'-1:lemma:fur'
-0.168495 Gtype    b'-1:word:fur'
-0.171875 Med      b'+1:lemma:.'
-0.171875 Med      b'+1:postag:.'
-0.171875 Med      b'+1:word:.'
-0.174409 Temp     b'-1:postag:IN'
-0.174641 O        b'+1:lemma:fecl2'
-0.174641 O        b'+1:word:FeCl2'
-0.182068 O        b'+1:word:mutant'
-0.184613 O        b'lemma:co2'
-0.184613 O        b'word:CO2'
-0.186050 O        b'word:mutant'
-0.187602 Gversion b'isUpper'
-0.190491 O        b'+1:lemma:gade'
-0.191418 O        b'lemma:\xce\xb4soxr'
-0.191418 O        b'word:\xce\x94soxR'
-0.192945 O        b'-1:lemma:n2'
-0.192945 O        b'-1:word:N2'
-0.193224 Gversion b'hLower'
-0.198156 Gtype    b'-1:lemma:,'
-0.198156 Gtype    b'-1:postag:,'
-0.198156 Gtype    b'-1:word:,'
-0.200339 O        b'lemma:\xce\xb4ompr'
-0.200339 O        b'word:\xce\x94ompR'
-0.201179 Supp     b'+1:lemma:dpd'
-0.201179 Supp     b'+1:word:DPD'
-0.201296 O        b'+1:lemma:gadw'
-0.201382 Air      b'lemma:anaerobically'
-0.201382 Air      b'word:anaerobically'
-0.202181 O        b'+1:lemma:b'
-0.202181 O        b'+1:word:B'
-0.203908 Gtype    b'+1:lemma:and'
-0.203908 Gtype    b'+1:word:and'
-0.204268 O        b'-1:lemma:of'
-0.204268 O        b'-1:word:of'
-0.204613 O        b'-1:lemma:.'
-0.204613 O        b'-1:postag:.'
-0.204613 O        b'-1:word:.'
-0.205023 O        b'-1:lemma:-lrb-'
-0.205023 O        b'-1:word:-LRB-'
-0.205100 Supp     b'lemma:10'
-0.205100 Supp     b'word:10'
-0.205230 Supp     b'+1:postag:NNP'
-0.205418 O        b'+1:lemma:strain'
-0.205716 Gtype    b'+1:postag:-LRB-'
-0.206649 Med      b'-1:postag:IN'
-0.209285 O        b'+1:lemma:minimal'
-0.209285 O        b'+1:word:minimal'
-0.210341 O        b'+1:lemma:antibody'
-0.210341 O        b'+1:word:antibody'
-0.211536 O        b'lemma:ph'
-0.211536 O        b'word:pH'
-0.212311 Med      b'+1:lemma:m9'
-0.212311 Med      b'+1:word:M9'
-0.212406 O        b'-1:lemma:control'
-0.212406 O        b'-1:word:control'
-0.212761 Med      b'+1:lemma:media'
-0.212761 Med      b'+1:word:media'
-0.214008 Supp     b'lemma:2'
-0.214008 Supp     b'word:2'
-0.214822 O        b'word:\xce\x94cra'
-0.215553 O        b'+1:postag:VB'
-0.217954 O        b'lemma:dissolve'
-0.217954 O        b'word:dissolved'
-0.220052 O        b'-1:lemma:1m'
-0.220052 O        b'-1:word:1M'
-0.221974 O        b'+1:lemma:.'
-0.221974 O        b'+1:postag:.'
-0.221974 O        b'+1:word:.'
-0.223372 Phase    b'isUpper'
-0.225403 Gtype    b'-1:lemma:and'
-0.225403 Gtype    b'-1:word:and'
-0.226825 O        b'+1:lemma:2.0'
-0.226825 O        b'+1:word:2.0'
-0.229569 Supp     b'+1:lemma:-rrb-'
-0.229569 Supp     b'+1:word:-RRB-'
-0.231100 O        b'lemma:phase'
-0.231100 O        b'word:phase'
-0.231139 O        b'lemma:glucose'
-0.231139 O        b'word:glucose'
-0.231191 O        b'+1:lemma:purify'
-0.233556 O        b'-1:lemma:sodium'
-0.233556 O        b'-1:word:Sodium'
-0.233702 O        b'+1:lemma:from'
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