report_Run3_v13.txt 36.5 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.27407078110271815, 'c2': 0.005866643096599482}
best CV score:0.8200873889763314
model size: 0.09M

Flat F1: 0.8129442512017062
             precision    recall  f1-score   support

         OD      0.913     1.000     0.955        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.902     0.420     0.574        88
       Anti      0.750     0.923     0.828        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.887     0.808     0.846        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.870     0.838     0.854       136
   Gversion      1.000     1.000     1.000         6

avg / total      0.898     0.764     0.813       484


Top likely transitions:
Temp   -> Temp    5.645844
Gtype  -> Gtype   5.490520
Supp   -> Supp    5.465638
OD     -> OD      5.370612
Anti   -> Anti    5.315444
Med    -> Med     5.135926
Air    -> Air     4.613983
Gversion -> Gversion 4.323041
O      -> O       4.242566
Technique -> Technique 4.069482
Phase  -> Phase   3.711936
pH     -> pH      2.994734
Agit   -> Agit    2.477565
Gtype  -> Supp    2.022207
O      -> Gtype   1.768555
O      -> Supp    1.608103
Substrain -> Gtype   1.172283
Technique -> Air     0.910077
O      -> Technique 0.897237
Air    -> O       0.750162
Gtype  -> pH      0.534799
Supp   -> O       0.369695
O      -> Gversion 0.226347
OD     -> O       0.161396
Temp   -> O       0.124220
Med    -> O       0.050687
O      -> Temp    0.032466
O      -> Anti    0.018920
O      -> pH      0.017010
O      -> Phase   0.010779
Technique -> Gtype   -0.000008
OD     -> Air     -0.008465
Phase  -> O       -0.071749
Gtype  -> Anti    -0.099662
Phase  -> OD      -0.385700
Supp   -> Med     -0.631759
O      -> Air     -0.673411
Gtype  -> O       -0.776590
Technique -> pH      -1.216638
Substrain -> O       -1.255130
Med    -> Supp    -1.350686


Top unlikely transitions:
Temp   -> Temp    5.645844
Gtype  -> Gtype   5.490520
Supp   -> Supp    5.465638
OD     -> OD      5.370612
Anti   -> Anti    5.315444
Med    -> Med     5.135926
Air    -> Air     4.613983
Gversion -> Gversion 4.323041
O      -> O       4.242566
Technique -> Technique 4.069482
Phase  -> Phase   3.711936
pH     -> pH      2.994734
Agit   -> Agit    2.477565
Gtype  -> Supp    2.022207
O      -> Gtype   1.768555
O      -> Supp    1.608103
Substrain -> Gtype   1.172283
Technique -> Air     0.910077
O      -> Technique 0.897237
Air    -> O       0.750162
Gtype  -> pH      0.534799
Supp   -> O       0.369695
O      -> Gversion 0.226347
OD     -> O       0.161396
Temp   -> O       0.124220
Med    -> O       0.050687
O      -> Temp    0.032466
O      -> Anti    0.018920
O      -> pH      0.017010
O      -> Phase   0.010779
Technique -> Gtype   -0.000008
OD     -> Air     -0.008465
Phase  -> O       -0.071749
Gtype  -> Anti    -0.099662
Phase  -> OD      -0.385700
Supp   -> Med     -0.631759
O      -> Air     -0.673411
Gtype  -> O       -0.776590
Technique -> pH      -1.216638
Substrain -> O       -1.255130
Med    -> Supp    -1.350686


Top positive:
5.601190 Air      b'word:Aerobic'
5.586363 Technique b'word:ChIP-exo'
5.525485 Air      b'lemma:anaerobic'
5.171074 O        b'lemma:_'
5.171074 O        b'word:_'
4.738186 O        b'word:Cra'
4.456802 Technique b'word:ChIP-Seq'
4.415892 O        b'postag:VBG'
4.406098 Supp     b'lemma:nh4cl'
4.007282 Gtype    b'lemma:wt'
3.841979 Technique b'lemma:rna-seq'
3.830006 O        b'postag::'
3.764045 Gtype    b'lemma:type'
3.764045 Gtype    b'word:type'
3.562504 O        b'lemma:chip'
3.543941 Med      b'word:LB'
3.492888 Technique b'word:ChIPSeq'
3.487001 O        b'lemma:at'
3.322290 O        b'postag:IN'
3.312801 Air      b'word:Anaerobic'
3.311877 Phase    b'lemma:mid-log'
3.311877 Phase    b'word:mid-log'
3.295576 Med      b'lemma:MOPS'
3.295576 Med      b'word:MOPS'
3.287436 Supp     b'lemma:arginine'
3.223298 O        b'+1:word:ChIP-Seq'
3.218984 Supp     b'-1:word:Cra'
3.181812 Supp     b'lemma:pq'
3.181812 Supp     b'word:PQ'
3.105752 Gtype    b'word:WT'
3.100521 Air      b'-1:lemma:ChIP-Seq'
3.100521 Air      b'-1:word:ChIP-Seq'
3.098255 O        b'lemma:-'
3.098255 O        b'word:-'
3.091317 Supp     b'+1:lemma:\xc2\xb5m'
3.091317 Supp     b'+1:word:\xc2\xb5M'
3.080650 O        b'-1:word:tag'
3.065237 O        b'-1:lemma:lb'
2.922029 Air      b'postag:RB'
2.862571 Strain   b'lemma:k-12'
2.862571 Strain   b'word:K-12'
2.821395 Air      b'lemma:aerobically'
2.821395 Air      b'word:aerobically'
2.817126 O        b'lemma:b'
2.817126 O        b'word:B'
2.782186 O        b'word:OmpR'
2.726331 Gversion b'lemma:asm584v2'
2.726331 Gversion b'word:ASM584v2'
2.722062 Strain   b'+1:lemma:substr'
2.722062 Strain   b'+1:word:substr'
2.717158 Supp     b'lemma:Iron'
2.717158 Supp     b'word:Iron'
2.717158 Supp     b'+1:word:Deficient'
2.687845 O        b'-1:postag:NNS'
2.650918 Agit     b'lemma:rpm'
2.650918 Agit     b'word:rpm'
2.631041 O        b'lemma:1'
2.631041 O        b'word:1'
2.620562 Gtype    b'+1:postag::'
2.603638 O        b'lemma:2'
2.603638 O        b'word:2'
2.566173 Gversion b'lemma:nc'
2.566173 Gversion b'word:NC'
2.535480 Gtype    b'-1:lemma:\xe2\x88\x86'
2.535480 Gtype    b'-1:word:\xe2\x88\x86'
2.533812 O        b'lemma:rpob'
2.533812 O        b'word:RpoB'
2.531104 Gtype    b'lemma:\xce\xb4cra'
2.521507 Gtype    b'word:\xce\x94cra'
2.518135 O        b'lemma:3'
2.518135 O        b'word:3'
2.514996 Phase    b'lemma:stationary'
2.514996 Phase    b'word:stationary'
2.514996 Phase    b'lemma:exponential'
2.514996 Phase    b'word:exponential'
2.488078 O        b'lemma:.'
2.488078 O        b'postag:.'
2.488078 O        b'word:.'
2.487975 Technique b'lemma:chipseq'
2.455989 Supp     b'lemma:glucose'
2.455989 Supp     b'word:glucose'
2.414865 Gtype    b'lemma:\xce\xb4fur'
2.414865 Gtype    b'word:\xce\x94fur'
2.414580 OD       b'-1:postag:IN'
2.385964 pH       b'+1:postag:CD'
2.361716 Agit     b'+1:lemma:rpm'
2.361716 Agit     b'+1:word:rpm'
2.296418 Gtype    b'-1:postag:VBG'
2.289302 O        b'+1:postag:RB'
2.270773 O        b'-1:lemma:tag'
2.260300 O        b'+1:word:were'
2.224008 Substrain b'lemma:mg1655'
2.224008 Substrain b'word:MG1655'
2.223447 O        b'-1:word:ChIP-exo'
2.204800 Supp     b'lemma:2h'
2.204800 Supp     b'-1:lemma:additional'
2.204800 Supp     b'word:2h'
2.204800 Supp     b'-1:word:additional'
2.203437 Gtype    b'+1:lemma:type'
2.203437 Gtype    b'+1:word:type'
2.136205 O        b'-1:word:Anaerobic'
2.093487 Gtype    b'lemma:pk4854'
2.093487 Gtype    b'word:PK4854'
2.077064 O        b'lemma:for'
2.074368 O        b'lemma:with'
2.074368 O        b'word:with'
2.069156 Supp     b'lemma:rifampicin'
2.069156 Supp     b'word:rifampicin'
2.041393 Med      b'lemma:media'
2.041393 Med      b'word:media'
2.035188 O        b'word:A'
2.009550 O        b'lemma:rep2'
2.009550 O        b'word:rep2'
2.009550 O        b'lemma:rep1'
2.009550 O        b'word:rep1'
1.963968 Gtype    b'lemma:delta-fnr'
1.963968 Gtype    b'word:delta-fnr'
1.941905 Supp     b'+1:word:hours'
1.929662 Vess     b'lemma:flask'
1.929662 Vess     b'-1:lemma:warm'
1.929662 Vess     b'word:flask'
1.929662 Vess     b'-1:word:warmed'
1.925750 Anti     b'+1:lemma:antibody'
1.925750 Anti     b'+1:word:antibody'
1.912088 O        b'+1:lemma:pq'
1.912088 O        b'+1:word:PQ'
1.894500 Technique b'lemma:rnaseq'
1.894500 Technique b'word:RNASeq'
1.888569 Supp     b'lemma:no3'
1.888569 Supp     b'word:NO3'
1.883730 Supp     b'lemma:iptg'
1.883730 Supp     b'word:IPTG'
1.860712 Med      b'lemma:medium'
1.860712 Med      b'word:medium'
1.773325 O        b'-1:lemma:0.3'
1.773325 O        b'-1:word:0.3'
1.771973 Gversion b'lemma:chip-seq'
1.761321 O        b'lemma:Cra'
1.726292 Supp     b'lemma:acetate'
1.726292 Supp     b'word:acetate'
1.714804 Supp     b'+1:word:was'
1.708296 O        b'+1:word:WT'
1.701524 Air      b'-1:lemma:-'
1.701524 Air      b'-1:word:-'
1.700660 Air      b'lemma:anaeroibc'
1.700660 Air      b'word:Anaeroibc'
1.688941 O        b'postag:CC'
1.688926 O        b'lemma:\xcf\x8332'
1.688926 O        b'word:\xcf\x8332'
1.675253 O        b'isLower'
1.668715 Gtype    b'lemma:wild-type'
1.667378 O        b'+1:lemma:k-12'
1.667378 O        b'+1:word:K-12'
1.657524 Supp     b'lemma:dpd'
1.657524 Supp     b'word:DPD'
1.627821 O        b'+1:lemma:wt'
1.627757 Gtype    b'lemma:\xe2\x88\x86'
1.627757 Gtype    b'word:\xe2\x88\x86'
1.627180 Supp     b'-1:lemma:Cra'
1.615627 O        b'lemma:a'
1.608651 Gtype    b'-1:lemma:nsrr'
1.608651 Gtype    b'+1:lemma:flagtag'
1.608651 Gtype    b'-1:word:NsrR'
1.608651 Gtype    b'+1:word:Flagtag'
1.608157 Med      b'+1:lemma:0.4'
1.608157 Med      b'+1:word:0.4'
1.602431 Temp     b'lemma:\xc2\xb0c'
1.602431 Temp     b'word:\xc2\xb0C'
1.600306 Temp     b'-1:word:sample'
1.584710 O        b'-1:lemma:type'
1.584710 O        b'-1:word:type'
1.580612 Gtype    b'+1:word:the'
1.579612 Gtype    b'lemma:\xce\xb4ompr'
1.579612 Gtype    b'word:\xce\x94ompR'
1.576370 O        b'-1:postag:NNP'
1.571749 Med      b'-1:word:ml'
1.567084 Gtype    b'+1:lemma:pq'
1.567084 Gtype    b'+1:word:PQ'
1.566910 Med      b'-1:lemma:ml'
1.563237 O        b'+1:postag::'
1.562207 Technique b'lemma:ChIP-exo'
1.562132 Temp     b'-1:lemma:sample'
1.561458 Supp     b'-1:lemma:vol'
1.561458 Supp     b'-1:word:vol'
1.560423 Gtype    b'+1:lemma:the'
1.555789 Supp     b'-1:lemma:with'
1.555789 Supp     b'-1:word:with'
1.554895 Temp     b'+1:lemma:\xc2\xb0c'
1.554895 Temp     b'+1:word:\xc2\xb0C'
1.528487 Technique b'-1:lemma:chip-exo'
1.520707 Supp     b'lemma:Adenine'
1.520707 Supp     b'word:Adenine'
1.509563 O        b'postag:VBN'
1.507514 Supp     b'-1:word:OmpR'
1.502490 O        b'+1:postag:NNP'
1.486393 Gtype    b'postag:JJ'
1.485553 Supp     b'lemma:nacl'
1.485553 Supp     b'word:NaCl'
1.475126 O        b'-1:word:Aerobic'
1.460295 Temp     b'-1:lemma:37'
1.460295 Temp     b'-1:word:37'
1.454349 Gtype    b'postag:-LRB-'
1.453801 Air      b'postag:JJ'
1.453573 O        b'lemma::'
1.453573 O        b'word::'
1.443093 O        b'+1:lemma:od600'
1.443093 O        b'+1:word:OD600'
1.432615 Gversion b'-1:lemma:nc'
1.432615 Gversion b'+1:lemma:000913'
1.432615 Gversion b'-1:word:NC'
1.432615 Gversion b'+1:word:000913'
1.430984 Air      b'lemma:aerobic'
1.430289 Gtype    b'lemma:arca8myc'
1.430289 Gtype    b'word:ArcA8myc'
1.428665 Med      b'lemma:minimal'
1.428665 Med      b'word:minimal'
1.427692 Supp     b'-1:postag:CD'
1.417488 Med      b'isUpper'
1.415390 Supp     b'-1:lemma:sodium'
1.415390 Supp     b'-1:word:Sodium'
1.400318 Gversion b'word:ChIP-Seq'
1.400172 O        b'-1:lemma:glucose'
1.400172 O        b'-1:word:glucose'
1.399760 Gtype    b'lemma:dfnr'
1.399760 Gtype    b'word:dFNR'
1.378897 Gversion b'lemma:000913'
1.378897 Gversion b'word:000913'
1.378636 Supp     b'lemma:Leu'
1.378636 Supp     b'word:Leu'
1.375728 O        b'word:Lrp'
1.374290 Technique b'+1:lemma:chip-exo'
1.374168 Anti     b'lemma:\xcf\x8332'
1.374168 Anti     b'word:\xcf\x8332'
1.360204 Anti     b'lemma:seqa'
1.360204 Anti     b'word:SeqA'
1.359984 OD       b'postag:CD'
1.333617 Gtype    b'postag:-RRB-'
1.331749 O        b'word:C'
1.331745 O        b'+1:postag:VBZ'
1.324637 Anti     b'lemma:none'
1.324637 Anti     b'word:none'
1.305475 Gtype    b'+1:lemma:ph5'
1.305475 Gtype    b'+1:word:pH5'
1.300774 Supp     b'-1:lemma:without'
1.300774 Supp     b'-1:word:without'
1.296558 Med      b'lemma:glucose'
1.296558 Med      b'word:glucose'
1.292778 Supp     b'+1:lemma:mm'
1.292778 Supp     b'+1:word:mM'
1.290108 O        b'-1:lemma:\xc2\xb0c'
1.290108 O        b'-1:word:\xc2\xb0C'
1.289951 Substrain b'+1:lemma:phtpg'
1.289951 Substrain b'+1:word:PhtpG'
1.286810 Gtype    b'+1:lemma:cra'
1.286810 Gtype    b'+1:word:cra'
1.285637 Supp     b'+1:lemma:1'
1.285637 Supp     b'+1:word:1'
1.284877 Technique b'lemma:ChIP-Seq'
1.283403 Vess     b'-1:postag:VBN'
1.279886 pH       b'lemma:ph5'
1.279886 pH       b'+1:lemma:.5'
1.279886 pH       b'word:pH5'
1.279886 pH       b'+1:word:.5'
1.275180 Med      b'lemma:LB'
1.271953 pH       b'lemma:5.5'
1.271953 pH       b'word:5.5'
1.271855 Gversion b'lemma:u00096'
1.271855 Gversion b'+1:lemma:.2'
1.271855 Gversion b'word:U00096'
1.271855 Gversion b'+1:word:.2'
1.264699 Supp     b'lemma:fructose'
1.264699 Supp     b'word:fructose'
1.250318 O        b'+1:lemma:coli'
1.250318 O        b'+1:word:coli'
1.247014 Gtype    b'-1:postag:VBP'
1.233961 Substrain b'lemma:mg1655star'
1.233961 Substrain b'word:MG1655star'
1.233883 Supp     b'-1:lemma:+'
1.233883 Supp     b'-1:word:+'
1.231525 Supp     b'-1:lemma:potassium'
1.231525 Supp     b'-1:word:potassium'
1.226949 Med      b'lemma:m63'
1.226949 Med      b'word:M63'
1.224288 O        b'lemma:soxr'
1.224288 O        b'word:SoxR'
1.224288 O        b'lemma:soxs'
1.224288 O        b'word:SoxS'
1.223317 O        b'+1:postag:VBN'
1.222195 Air      b'-1:lemma:co2'
1.222195 Air      b'-1:word:CO2'
1.215149 Supp     b'lemma:Fe'
1.215149 Supp     b'word:Fe'
1.207974 Technique b'-1:lemma:IP'
1.207974 Technique b'-1:word:IP'
1.197633 O        b'+1:lemma:mid-log'
1.197633 O        b'+1:word:mid-log'
1.187634 Temp     b'-1:lemma:43'
1.187634 Temp     b'-1:word:43'
1.161872 Agit     b'-1:lemma:250'
1.161872 Agit     b'-1:word:250'
1.159848 pH       b'+1:lemma:5.5'
1.159848 pH       b'+1:word:5.5'
1.155018 Agit     b'lemma:250'
1.155018 Agit     b'word:250'
1.153197 Phase    b'-1:lemma:until'
1.153197 Phase    b'-1:word:until'
1.145252 Gtype    b'+1:lemma:_'
1.145252 Gtype    b'+1:word:_'
1.143222 Med      b'+1:lemma:2.0'
1.143222 Med      b'+1:word:2.0'
1.123385 Gversion b'lemma:.2'
1.123385 Gversion b'-1:lemma:u00096'
1.123385 Gversion b'word:.2'
1.123385 Gversion b'-1:word:U00096'
1.121400 Temp     b'lemma:43'
1.121400 Temp     b'word:43'
1.117033 O        b'lemma:CEL'
1.117033 O        b'word:CEL'
1.116647 Supp     b'+1:lemma:2'
1.116647 Supp     b'+1:word:2'
1.106703 Gversion b'postag:CD'
1.085915 O        b'lemma:gadx'
1.069996 O        b'postag:NNS'
1.069170 O        b'+1:lemma:rifampicin'
1.069170 O        b'+1:word:rifampicin'
1.068379 O        b'postag:DT'
1.063635 Technique b'+1:lemma:rna-seq'
1.063635 Technique b'+1:word:RNA-seq'
1.057445 O        b'lemma:culture'
1.053088 Phase    b'-1:lemma:mid-log'
1.053088 Phase    b'-1:word:mid-log'
1.051937 Gtype    b'-1:lemma:factor'
1.051937 Gtype    b'-1:word:factor'
1.048315 Supp     b'-1:postag:IN'
1.030877 O        b'+1:lemma:43'
1.030877 O        b'+1:word:43'
1.029574 Technique b'+1:word:ChIP-exo'
1.028064 Temp     b'isNumber'
1.026477 O        b'+1:lemma:ph5'
1.026477 O        b'+1:word:pH5'
1.021788 Anti     b'-1:lemma::'
1.021788 Anti     b'-1:word::'
1.009235 O        b'+1:lemma:wash'
1.009234 Air      b'word:anaerobic'
1.007922 Gtype    b'lemma:\xce\xb4oxyr'
1.007922 Gtype    b'word:\xce\x94oxyR'
1.002902 Supp     b'lemma:leucine'
1.002902 Supp     b'word:leucine'
1.001338 Gtype    b'lemma:crp'
1.001338 Gtype    b'word:crp'
1.000507 O        b'isNumber'
0.994124 O        b'lemma:argr'
0.994124 O        b'word:ArgR'
0.994023 OD       b'+1:lemma:of'
0.994023 OD       b'+1:word:of'
0.988340 Gtype    b'lemma:delta-arca'
0.988340 Gtype    b'word:delta-arcA'
0.987916 O        b'lemma:or'
0.987916 O        b'word:or'
0.985569 Substrain b'-1:lemma:.'
0.985569 Substrain b'-1:postag:.'
0.985569 Substrain b'-1:word:.'
0.975143 Vess     b'+1:lemma:at'
0.975143 Vess     b'+1:word:at'
0.974567 Med      b'-1:lemma:minimal'
0.974567 Med      b'-1:word:minimal'
0.969995 Gtype    b'lemma:fnr8myc'
0.969995 Gtype    b'word:Fnr8myc'
0.969503 O        b'-1:lemma:ChIP-exo'
0.964542 O        b'+1:lemma:250'
0.964542 O        b'+1:word:250'
0.946414 Supp     b'+1:lemma:be'
0.944583 O        b'-1:lemma:wt'
0.944051 Supp     b'-1:lemma:of'
0.944051 Supp     b'-1:word:of'
0.937646 Supp     b'-1:lemma:0.3'
0.937646 Supp     b'-1:word:0.3'
0.933287 Gtype    b'-1:postag::'
0.929790 Air      b'-1:postag:CD'
0.923624 O        b'-1:lemma:into'
0.923624 O        b'-1:word:into'
0.922715 Air      b'-1:postag:NN'
0.916161 Supp     b'postag:NNP'
0.914659 O        b'lemma:chip-arca'
0.914659 O        b'word:chip-ArcA'
0.906839 O        b'+1:lemma:read'
0.906787 Gtype    b'postag:NN'
0.903406 Gtype    b'lemma:wildtype'
0.888286 O        b'lemma:to'
0.888286 O        b'postag:TO'
0.887477 O        b'+1:lemma:0.2'
0.887477 O        b'+1:word:0.2'
0.885294 O        b'lemma:purr'
0.885294 O        b'word:PurR'
0.882010 O        b'+1:word:reads'
0.878508 Phase    b'isLower'
0.875605 Gtype    b'-1:lemma:ptac'
0.875605 Gtype    b'-1:word:Ptac'
0.874156 Temp     b'-1:lemma:\xcf\x8332'
0.874156 Temp     b'-1:word:\xcf\x8332'
0.871371 Anti     b'-1:postag::'
0.870509 Med      b'postag:NNS'
0.868823 Med      b'+1:lemma:-lrb-'
0.868823 Med      b'+1:word:-LRB-'
0.864642 Technique b'-1:lemma:_'
0.864642 Technique b'-1:word:_'
0.864393 OD       b'lemma:od450'
0.864393 OD       b'word:OD450'
0.864393 OD       b'-1:word:At'
0.858868 O        b'word:GadX'
0.857171 Med      b'+1:postag:-LRB-'
0.853676 OD       b'+1:postag:IN'
0.851555 Med      b'+1:lemma:g/l'
0.851555 Med      b'+1:word:g/L'
0.851385 Phase    b'postag:NN'
0.851227 pH       b'-1:postag:NN'
0.839251 O        b'+1:lemma:\xe2\x88\x86'
0.839251 O        b'+1:word:\xe2\x88\x86'
0.839161 Air      b'+1:lemma:%'
0.839161 Air      b'+1:word:%'
0.816656 Gversion b'lemma:_'
0.816656 Gversion b'word:_'
0.811849 O        b'lemma:oxyr'
0.811849 O        b'word:OxyR'
0.806763 OD       b'lemma:od600'
0.806763 OD       b'word:OD600'
0.806412 Temp     b'lemma:37'
0.806412 Temp     b'word:37'
0.799212 Gtype    b'+1:lemma:with'
0.799212 Gtype    b'+1:word:with'
0.797984 OD       b'-1:lemma:~'
0.797984 OD       b'-1:word:~'
0.793893 Supp     b'lemma:20'
0.793893 Supp     b'word:20'
0.793377 O        b'isUpper'
0.789934 Temp     b'word:sample'
0.789508 Gtype    b'-1:lemma:_'
0.789508 Gtype    b'-1:word:_'
0.788088 pH       b'-1:word:at'
0.787837 O        b'lemma:ml'
0.785519 Supp     b'-1:lemma:\xc2\xb5m'
0.785519 Supp     b'-1:word:\xc2\xb5M'
0.784607 O        b'lemma:harbor'
0.784607 O        b'word:harboring'
0.777417 O        b'+1:lemma:old'
0.777417 O        b'+1:word:old'
0.775795 Air      b'-1:lemma:%'
0.775795 Air      b'-1:word:%'
0.773465 Gtype    b'-1:lemma:rpob'
0.773465 Gtype    b'-1:word:RpoB'
0.766736 Med      b'+1:lemma:minimal'
0.766736 Med      b'+1:word:minimal'
0.765379 O        b'lemma:-lrb-'
0.765379 O        b'word:-LRB-'
0.765342 Technique b'lemma:-rrb-'
0.765342 Technique b'word:-RRB-'
0.765244 Anti     b'+1:lemma:-lrb-'
0.765244 Anti     b'+1:word:-LRB-'
0.764307 O        b'lemma:rnase'
0.764307 O        b'word:RNase'
0.763681 Supp     b'+1:lemma:_'
0.763681 Supp     b'+1:word:_'
0.763196 pH       b'-1:lemma:at'
0.763192 Temp     b'lemma:sample'
0.756666 Supp     b'+1:lemma:iptg'
0.756666 Supp     b'+1:word:IPTG'
0.755965 Gtype    b'-1:lemma::'
0.755965 Gtype    b'-1:word::'
0.751976 Anti     b'+1:postag:NN'
0.749277 Supp     b'-1:lemma:1m'
0.749277 Supp     b'-1:word:1M'
0.746771 O        b'lemma:chip-fnr'
0.746771 O        b'word:chip-Fnr'
0.743408 O        b'-1:lemma:l1'
0.743408 O        b'-1:word:L1'
0.742843 O        b'lemma:genotype/variation'
0.742843 O        b'word:genotype/variation'
0.738057 Air      b'lemma:%'
0.738057 Air      b'word:%'
0.733654 Supp     b'+1:postag:VBD'
0.728845 Anti     b'-1:lemma:polymerase'
0.725504 O        b'+1:word:wash'
0.721121 Med      b'+1:postag:CD'
0.718964 Supp     b'+1:lemma:min'
0.718964 Supp     b'+1:word:min'
0.715553 O        b'lemma:,'
0.715553 O        b'postag:,'
0.715553 O        b'word:,'
0.713513 O        b'lemma:mm'
0.713513 O        b'word:mM'
0.710414 Gtype    b'lemma:deltaseqa'
0.710414 Gtype    b'-1:lemma:old'
0.710414 Gtype    b'word:deltaSeqA'
0.710414 Gtype    b'-1:word:old'
0.707041 O        b'lemma:0.4'
0.707041 O        b'word:0.4'
0.702862 O        b'-1:lemma:pq'
0.702862 O        b'-1:word:PQ'
0.702084 O        b'+1:lemma:fnr-8myc'
0.702084 O        b'+1:word:Fnr-8myc'


Top negative:
0.081846 Agit     b'-1:postag:-LRB-'
0.081308 O        b'+1:lemma:phase'
0.081308 O        b'+1:word:phase'
0.078356 O        b'-1:lemma:anti-rpos'
0.078356 O        b'+1:lemma:neoclone'
0.078356 O        b'-1:word:anti-RpoS'
0.078356 O        b'+1:word:neoclone'
0.077477 Technique b'-1:postag:NN'
0.077016 Air      b'+1:postag:NN'
0.076883 O        b'lemma:and'
0.076883 O        b'word:and'
0.075664 O        b'-1:word:WT'
0.075178 Air      b'-1:postag:-RRB-'
0.070944 Supp     b'+1:lemma:m'
0.070944 Supp     b'+1:word:M'
0.067646 O        b'lemma:be'
0.067533 Agit     b'-1:lemma:-lrb-'
0.067533 Agit     b'-1:word:-LRB-'
0.065469 Med      b'+1:postag:VBG'
0.063782 O        b'lemma:um'
0.063782 O        b'word:uM'
0.062763 Supp     b'-1:word:WT'
0.061866 Supp     b'lemma:fecl2'
0.061866 Supp     b'word:FeCl2'
0.059502 Substrain b'postag:NN'
0.058526 O        b'lemma:hs2'
0.058526 O        b'word:HS2'
0.058401 O        b'-1:lemma:m63'
0.058401 O        b'-1:word:M63'
0.058323 O        b'+1:lemma:aerobically'
0.058323 O        b'+1:word:aerobically'
0.056781 Gtype    b'lemma:factor'
0.056781 Gtype    b'-1:lemma:transcription'
0.056781 Gtype    b'+1:lemma:Fur'
0.056781 Gtype    b'word:factor'
0.056781 Gtype    b'-1:word:transcription'
0.056781 Gtype    b'+1:word:Fur'
0.056572 O        b'-1:lemma:nitrate'
0.056572 O        b'-1:word:nitrate'
0.056384 Supp     b'lemma:7.6'
0.056384 Supp     b'+1:lemma:;'
0.056384 Supp     b'word:7.6'
0.056384 Supp     b'+1:word:;'
0.054781 Supp     b'-1:lemma:m'
0.054781 Supp     b'-1:word:M'
0.054700 O        b'lemma:pt7'
0.054700 O        b'word:pT7'
0.053569 Anti     b'isLower'
0.053470 Gtype    b'-1:postag:IN'
0.048381 O        b'-1:lemma:5'
0.048381 O        b'-1:word:5'
0.047092 Air      b'isUpper'
0.045682 O        b'lemma:fresh'
0.045682 O        b'word:fresh'
0.045363 Temp     b'+1:postag:VB'
0.044495 OD       b'+1:word:a'
0.044241 O        b'lemma:-80'
0.044241 O        b'word:-80'
0.044085 O        b'+1:lemma:_'
0.044085 O        b'+1:word:_'
0.040240 Technique b'-1:postag:NNP'
0.038481 Supp     b'+1:postag:JJ'
0.037678 Supp     b'lemma:mg/ml'
0.037678 Supp     b'-1:lemma:150'
0.037678 Supp     b'word:mg/mL'
0.037678 Supp     b'-1:word:150'
0.037634 O        b'postag:NN'
0.037555 Supp     b'+1:postag:IN'
0.036120 Temp     b'-1:postag:NN'
0.036105 O        b'-1:lemma:\xce\xbcm'
0.036105 O        b'-1:word:\xce\xbcM'
0.034180 Technique b'+1:lemma:Anaerobic'
0.032848 Supp     b'-1:lemma:\xce\xb4ompr'
0.032848 Supp     b'-1:word:\xce\x94ompR'
0.032546 OD       b'+1:lemma:-rrb-'
0.032546 OD       b'+1:word:-RRB-'
0.032333 Supp     b'lemma:phosphate'
0.032333 Supp     b'word:phosphate'
0.031822 Air      b'postag:CD'
0.031756 Technique b'isUpper'
0.026796 O        b'lemma:+'
0.026796 O        b'word:+'
0.024284 Technique b'-1:postag:CD'
0.023145 O        b'lemma:sodium'
0.023145 O        b'word:Sodium'
0.022832 O        b'lemma:cacl2'
0.022832 O        b'+1:lemma:,1.2'
0.022832 O        b'word:CaCl2'
0.022832 O        b'+1:word:,1.2'
0.022673 Gtype    b'-1:postag:-LRB-'
0.022325 OD       b'+1:postag:-RRB-'
0.022248 Supp     b'lemma:in'
0.022248 Supp     b'word:in'
0.020308 O        b'lemma:10'
0.020308 O        b'word:10'
0.019973 O        b'+1:lemma:dna'
0.019973 O        b'+1:word:DNA'
0.019351 Air      b'lemma:-rrb-'
0.019351 Air      b'word:-RRB-'
0.018941 O        b'-1:lemma:%'
0.018941 O        b'-1:word:%'
0.018193 O        b'lemma:od600'
0.018193 O        b'word:OD600'
0.018122 O        b'lemma:\xce\xbcm'
0.018122 O        b'word:\xce\xbcM'
0.017487 O        b'lemma:,1.2'
0.017487 O        b'-1:lemma:cacl2'
0.017487 O        b'word:,1.2'
0.017487 O        b'-1:word:CaCl2'
0.017034 Gtype    b'-1:lemma:-rcb-'
0.017034 Gtype    b'-1:word:-RCB-'
0.016409 Supp     b'-1:lemma:\xce\xb4cra'
0.016152 Supp     b'-1:word:\xce\x94cra'
0.015631 Air      b'-1:lemma:cm20'
0.015631 Air      b'-1:word:Cm20'
0.014140 Gtype    b'word:RyhB'
0.014069 O        b'-1:lemma:at'
0.012898 Air      b'-1:lemma:-lrb-'
0.012898 Air      b'-1:word:-LRB-'
0.011727 Gtype    b'-1:postag:DT'
0.010988 Supp     b'-1:lemma:30'
0.010988 Supp     b'-1:word:30'
0.010573 O        b'lemma:dna'
0.010573 O        b'word:DNA'
0.009651 Phase    b'-1:postag::'
0.008514 Gtype    b'+1:lemma:nacl'
0.008514 Gtype    b'+1:word:NaCl'
0.007680 O        b'lemma:n2'
0.007680 O        b'word:N2'
0.007015 O        b'lemma:co2'
0.007015 O        b'word:CO2'
0.006794 Supp     b'+1:lemma:ph'
0.006794 Supp     b'+1:word:pH'
0.006756 Supp     b'-1:lemma:0.1'
0.006756 Supp     b'-1:word:0.1'
0.006414 O        b'lemma:k-12'
0.006414 O        b'word:K-12'
0.006222 O        b'+1:lemma:0.4'
0.006222 O        b'+1:word:0.4'
0.005700 Supp     b'-1:postag:SYM'
0.004348 Gtype    b'+1:lemma:control'
0.004348 Gtype    b'+1:word:control'
0.004248 O        b'word:ChIP'
0.003457 OD       b'+1:lemma:a'
0.003231 O        b'lemma:supplement'
0.003231 O        b'word:supplemented'
0.003015 OD       b'+1:postag:DT'
0.002961 O        b'+1:lemma:o.d.'
0.002961 O        b'+1:word:O.D.'
0.002894 Gtype    b'lemma:vector'
0.002894 Gtype    b'word:vector'
0.002325 Supp     b'-1:lemma:for'
0.002301 O        b'-1:lemma:genotype/variation'
0.002301 O        b'-1:word:genotype/variation'
0.002118 Supp     b'-1:lemma:20'
0.002118 Supp     b'-1:word:20'
0.001886 O        b'+1:postag:VBP'
0.001864 Agit     b'+1:lemma:-rrb-'
0.001864 Agit     b'+1:word:-RRB-'
0.001821 Agit     b'+1:postag:-RRB-'
0.001772 Air      b'lemma:-lrb-'
0.001772 Air      b'word:-LRB-'
0.001543 Gtype    b'-1:postag:-RRB-'
0.001480 O        b'+1:lemma:co2'
0.001480 O        b'+1:word:CO2'
0.001245 O        b'+1:lemma:cacl2'
0.001245 O        b'+1:word:CaCl2'
0.001107 Supp     b'-1:lemma:ph'
0.001107 Supp     b'-1:word:pH'
0.001036 Supp     b'lemma:;'
0.001036 Supp     b'-1:lemma:7.6'
0.001036 Supp     b'word:;'
0.001036 Supp     b'-1:word:7.6'
0.000961 Supp     b'+1:postag:CC'
0.000950 OD       b'postag:NN'
0.000901 Supp     b'+1:lemma:of'
0.000901 Supp     b'+1:word:of'
0.000763 Phase    b'+1:postag:IN'
0.000548 Phase    b'+1:lemma:for'
0.000484 Gversion b'-1:word:the'
0.000479 Gversion b'-1:lemma:the'
0.000445 O        b'-1:lemma:4'
0.000445 O        b'-1:word:4'
0.000403 Gtype    b'+1:lemma:vector'
0.000403 Gtype    b'+1:word:vector'
0.000377 Gversion b'-1:postag:DT'
0.000350 OD       b'-1:word:to'
0.000348 Technique b'-1:word:ChIP-exo'
0.000318 Supp     b'-1:lemma:ompr'
0.000294 Supp     b'+1:lemma:glucose'
0.000294 Supp     b'+1:word:glucose'
0.000291 Supp     b'-1:lemma:wt'
0.000249 OD       b'-1:lemma:to'
0.000249 OD       b'-1:postag:TO'
0.000234 Supp     b'+1:lemma:7.6'
0.000234 Supp     b'+1:word:7.6'
0.000201 O        b'+1:postag:SYM'
0.000176 O        b'lemma:phase'
0.000176 O        b'word:phase'
0.000120 Anti     b'lemma:9e10'
0.000120 Anti     b'+1:lemma:myc'
0.000120 Anti     b'word:9E10'
0.000120 Anti     b'+1:word:Myc'
0.000060 Gtype    b'+1:postag:-RRB-'
0.000041 O        b'lemma:\xc2\xb0c'
0.000041 O        b'word:\xc2\xb0C'
0.000027 Phase    b'+1:lemma:pahse'
0.000027 Phase    b'+1:word:pahse'
0.000020 Gtype    b'lemma:Fur'
0.000020 Gtype    b'word:Fur'
0.000016 Agit     b'isNumber'
0.000016 O        b'lemma:escherichia'
0.000016 O        b'word:Escherichia'
0.000004 Gtype    b'word:fnr'
0.000004 O        b'+1:lemma:or'
0.000004 O        b'+1:word:or'
0.000001 Technique b'word:RNA-Seq'
-0.000002 pH       b'isNumber'
-0.000004 Gtype    b'+1:postag:CD'
-0.000005 Supp     b'postag:CC'
-0.000099 O        b'-1:lemma:m'
-0.000099 O        b'-1:word:M'
-0.000136 O        b'-1:word:for'
-0.000252 Supp     b'-1:lemma:the'
-0.000271 Gtype    b'+1:lemma:2'
-0.000271 Gtype    b'+1:word:2'
-0.000318 O        b'-1:lemma:0.2'
-0.000318 O        b'-1:word:0.2'
-0.000331 O        b'-1:lemma:n2'
-0.000331 O        b'-1:word:N2'
-0.000420 O        b'lemma:min'
-0.000420 O        b'word:min'
-0.000446 O        b'+1:lemma:glucose'
-0.000446 O        b'+1:word:glucose'
-0.000460 O        b'lemma:m63'
-0.000460 O        b'word:M63'
-0.000647 Anti     b'-1:postag:NN'
-0.000652 O        b'+1:lemma:sample'
-0.001087 O        b'lemma:ph'
-0.001087 O        b'word:pH'
-0.001310 Air      b'+1:lemma:and'
-0.001310 Air      b'+1:word:and'
-0.001577 Phase    b'-1:postag:IN'
-0.002628 OD       b'+1:postag:CD'
-0.002851 O        b'lemma:pahse'
-0.002851 O        b'word:pahse'
-0.002882 O        b'lemma:0.1'
-0.002882 O        b'word:0.1'
-0.003035 O        b'lemma:glucose'
-0.003035 O        b'word:glucose'
-0.003770 Supp     b'+1:postag:NNP'
-0.005039 O        b'lemma:mg/ml'
-0.005039 O        b'-1:lemma:150'
-0.005039 O        b'word:mg/mL'
-0.005039 O        b'-1:word:150'
-0.005446 Med      b'+1:postag:IN'
-0.006606 O        b'lemma:7.6'
-0.006606 O        b'+1:lemma:;'
-0.006606 O        b'word:7.6'
-0.006606 O        b'+1:word:;'
-0.006762 Air      b'-1:postag:-LRB-'
-0.007082 O        b'-1:lemma:for'
-0.007269 Air      b'+1:lemma:-rrb-'
-0.007269 Air      b'+1:word:-RRB-'
-0.007398 Technique b'-1:postag::'
-0.008860 Air      b'postag:-RRB-'
-0.009195 Gtype    b'-1:postag:JJ'
-0.009445 Air      b'lemma:n2'
-0.009445 Air      b'word:N2'
-0.009621 OD       b'-1:word:an'
-0.009679 O        b'word:LB'
-0.010588 O        b'+1:lemma:fecl2'
-0.010588 O        b'+1:word:FeCl2'
-0.013060 Air      b'+1:postag:-RRB-'
-0.013172 O        b'lemma:0.2'
-0.013172 O        b'word:0.2'
-0.013551 Gtype    b'-1:postag:NN'
-0.015563 Air      b'postag:CC'
-0.017789 Supp     b'isUpper'
-0.017879 O        b'lemma:1m'
-0.017879 O        b'word:1M'
-0.019135 O        b'lemma:150'
-0.019135 O        b'+1:lemma:mg/ml'
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