********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.00084178893321496, 'c2': 0.02569494717099116}
best CV score:0.8166537086281624
model size: 0.14M

Flat F1: 0.8064351956938172
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.804     0.891        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.590     0.557     0.573        88
       Anti      0.692     0.692     0.692        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.925     0.795     0.855        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.864     0.838     0.851       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.848     0.773     0.806       484


Top likely transitions:
Supp   -> Supp    5.161791
Med    -> Med     5.065398
Anti   -> Anti    4.935671
Gtype  -> Gtype   4.771197
O      -> O       4.692809
OD     -> OD      4.593007
Air    -> Air     4.459975
Temp   -> Temp    4.342987
Gversion -> Gversion 4.338344
Phase  -> Phase   4.036218
pH     -> pH      2.857783
Technique -> Technique 2.652448
Agit   -> Agit    2.559651
Substrain -> Gtype   1.923478
Gtype  -> Supp    1.699776
Air    -> O       1.278157
O      -> Supp    1.258769
Technique -> Air     1.145757
O      -> Gtype   1.025954
O      -> Technique 0.840077
Gtype  -> pH      0.743361
Temp   -> O       0.364323
Strain -> O       0.353792
Supp   -> O       0.244430
Gtype  -> Air     0.197024
Anti   -> O       0.195876
pH     -> O       0.164429
O      -> Temp    0.140279
Agit   -> O       0.137079
OD     -> O       0.115771
O      -> pH      0.111196
Vess   -> O       0.078828
O      -> Vess    0.050908
Strain -> Vess    -0.002661
Vess   -> Agit    -0.003171
Substrain -> Agit    -0.003952
Strain -> Strain  -0.004944
Agit   -> Strain  -0.006788
Phase  -> Air     -0.007709
Substrain -> Strain  -0.008253
Gversion -> Substrain -0.008254
Substrain -> Gversion -0.009919
Gversion -> Vess    -0.011303
Gversion -> Strain  -0.012243
Strain -> Agit    -0.014898
Substrain -> Anti    -0.016766
Vess   -> Phase   -0.019046
Med    -> Substrain -0.021373
Substrain -> Phase   -0.021405
Med    -> O       -0.023785
Agit   -> Gversion -0.025755
Agit   -> Phase   -0.030406
Agit   -> Anti    -0.030890
pH     -> Substrain -0.032279
pH     -> Strain  -0.032423
Strain -> Gversion -0.032697
O      -> Agit    -0.034086
pH     -> Anti    -0.042486
pH     -> Vess    -0.043935
OD     -> Substrain -0.043991
Temp   -> Strain  -0.044706
OD     -> Vess    -0.045331
Temp   -> Substrain -0.046323
OD     -> Anti    -0.046872
Med    -> Strain  -0.051412
Temp   -> Vess    -0.053030
Strain -> Anti    -0.054204
Med    -> Vess    -0.054468
Vess   -> Med     -0.054804
Vess   -> Technique -0.057243
O      -> Strain  -0.060434
Anti   -> Agit    -0.064632
OD     -> Strain  -0.066234
Temp   -> Agit    -0.069172
Phase  -> Agit    -0.070430
Anti   -> Vess    -0.071067
Vess   -> pH      -0.074913
Phase  -> Strain  -0.075090
Anti   -> Strain  -0.075094
Phase  -> Vess    -0.075976
Vess   -> Gtype   -0.076426
Air    -> Vess    -0.083458
Strain -> Phase   -0.085578
Gversion -> Anti    -0.086083
Phase  -> Substrain -0.087902
OD     -> Phase   -0.089697
Air    -> Strain  -0.091128
O      -> Phase   -0.095617
Technique -> Vess    -0.097642
Temp   -> Phase   -0.099651
Temp   -> Gversion -0.100646
O      -> Gversion -0.101429
OD     -> Gversion -0.102074
Technique -> Strain  -0.102501
pH     -> Phase   -0.106725
Air    -> Substrain -0.108667
Agit   -> pH      -0.109012
Gversion -> Agit    -0.109830
Gtype  -> O       -0.114188
Strain -> Technique -0.114386
Substrain -> OD      -0.114389
Strain -> OD      -0.115596
Strain -> Med     -0.116004
Substrain -> Technique -0.116389
Agit   -> Temp    -0.120333
Vess   -> Air     -0.121084
Gversion -> Phase   -0.122671
Vess   -> Supp    -0.124826
Anti   -> Substrain -0.126141
Phase  -> O       -0.126185
Substrain -> Med     -0.127341
Substrain -> Temp    -0.131526
Vess   -> OD      -0.133304
Vess   -> Temp    -0.134264
Temp   -> Anti    -0.135707
Technique -> O       -0.137590
pH     -> Technique -0.147134
Med    -> Gversion -0.154810
Phase  -> Gversion -0.166308
Substrain -> Air     -0.168637
Air    -> Anti    -0.168687
Agit   -> Med     -0.176116
pH     -> Gtype   -0.176298
pH     -> Gversion -0.177888
Gtype  -> Vess    -0.180194
Agit   -> Vess    -0.182199
Med    -> Anti    -0.183107
Supp   -> Substrain -0.188335
O      -> Anti    -0.188881
Gtype  -> Strain  -0.192685
Anti   -> Gversion -0.194952
Gversion -> Med     -0.195353
Strain -> Air     -0.195467
Agit   -> OD      -0.196715
Agit   -> Gtype   -0.198675
Supp   -> Strain  -0.200662
Med    -> Agit    -0.201004
Technique -> Substrain -0.205740
Temp   -> pH      -0.206332
pH     -> Med     -0.207614
Air    -> Gversion -0.212123
Gversion -> OD      -0.215877
OD     -> Gtype   -0.217055
Med    -> Phase   -0.224585
OD     -> Agit    -0.232837
Anti   -> Phase   -0.241288
O      -> Substrain -0.244537
Strain -> Temp    -0.246888
Technique -> Anti    -0.251721
Gtype  -> Agit    -0.252879
Gversion -> pH      -0.255667
Temp   -> Technique -0.256396
pH     -> OD      -0.259549
Technique -> Phase   -0.262190
Substrain -> pH      -0.270170
Supp   -> Agit    -0.273594
Air    -> pH      -0.280698
Supp   -> Vess    -0.281236
Gtype  -> Substrain -0.300228
pH     -> Air     -0.309339
pH     -> Agit    -0.320650
Med    -> OD      -0.324359
Phase  -> pH      -0.329451
Phase  -> Gtype   -0.330447
Anti   -> pH      -0.333268
Substrain -> Supp    -0.347571
Strain -> Supp    -0.351154
Air    -> Gtype   -0.352211
Med    -> pH      -0.357412
Gversion -> Supp    -0.363564
Temp   -> OD      -0.366875
Agit   -> Supp    -0.367087
pH     -> Supp    -0.367327
Strain -> pH      -0.368713
Gversion -> O       -0.374281
OD     -> pH      -0.375326
Gversion -> Gtype   -0.375517
Temp   -> Supp    -0.375625
Phase  -> Anti    -0.377070
Strain -> Gtype   -0.379184
Temp   -> Gtype   -0.384279
Anti   -> Air     -0.387737
Technique -> Agit    -0.388212
Technique -> Temp    -0.400369
Agit   -> Technique -0.404882
OD     -> Med     -0.436361
Gversion -> Temp    -0.441505
Anti   -> OD      -0.444541
Phase  -> Temp    -0.449977
Phase  -> Supp    -0.480579
Anti   -> Technique -0.488091
Technique -> Gversion -0.492070
Technique -> Med     -0.493742
pH     -> Temp    -0.496151
Med    -> Gtype   -0.505660
Supp   -> Anti    -0.512137
Gtype  -> Temp    -0.513788
Temp   -> Air     -0.515990
Gversion -> Technique -0.518619
Gversion -> Air     -0.522097
Anti   -> Supp    -0.525242
Gtype  -> OD      -0.527395
Supp   -> Phase   -0.540754
Med    -> Technique -0.562774
Anti   -> Gtype   -0.571726
OD     -> Technique -0.579373
Supp   -> Gversion -0.586360
OD     -> Temp    -0.599145
Supp   -> pH      -0.599686
O      -> OD      -0.606183
Med    -> Temp    -0.615943
Med    -> Air     -0.630306
Air    -> Technique -0.635666
Air    -> Med     -0.643731
Gtype  -> Phase   -0.644540
Supp   -> OD      -0.676695
Supp   -> Temp    -0.694590
Anti   -> Med     -0.712971
OD     -> Supp    -0.734283
O      -> Med     -0.778027
Gtype  -> Technique -0.781323
Supp   -> Gtype   -0.799860
Supp   -> Air     -0.813306
Gtype  -> Gversion -0.817040
Technique -> Supp    -0.822879
Air    -> Temp    -0.825159
Gtype  -> Anti    -0.844214
Agit   -> Air     -0.851789
Air    -> OD      -0.860711
Air    -> Supp    -0.914836
Anti   -> Temp    -0.942122
Supp   -> Technique -0.945467
Phase  -> Med     -0.965019
Gtype  -> Med     -1.086777
Technique -> OD      -1.163673
OD     -> Air     -1.182778
Air    -> Agit    -1.185549
Phase  -> Technique -1.212120
Air    -> Phase   -1.251654
Phase  -> OD      -1.370704
Substrain -> O       -1.381827
Temp   -> Med     -1.477168
Technique -> Gtype   -1.551518
O      -> Air     -1.582375
Supp   -> Med     -1.886362
Technique -> pH      -2.211809
Med    -> Supp    -2.298899


Top unlikely transitions:
Supp   -> Supp    5.161791
Med    -> Med     5.065398
Anti   -> Anti    4.935671
Gtype  -> Gtype   4.771197
O      -> O       4.692809
OD     -> OD      4.593007
Air    -> Air     4.459975
Temp   -> Temp    4.342987
Gversion -> Gversion 4.338344
Phase  -> Phase   4.036218
pH     -> pH      2.857783
Technique -> Technique 2.652448
Agit   -> Agit    2.559651
Substrain -> Gtype   1.923478
Gtype  -> Supp    1.699776
Air    -> O       1.278157
O      -> Supp    1.258769
Technique -> Air     1.145757
O      -> Gtype   1.025954
O      -> Technique 0.840077
Gtype  -> pH      0.743361
Temp   -> O       0.364323
Strain -> O       0.353792
Supp   -> O       0.244430
Gtype  -> Air     0.197024
Anti   -> O       0.195876
pH     -> O       0.164429
O      -> Temp    0.140279
Agit   -> O       0.137079
OD     -> O       0.115771
O      -> pH      0.111196
Vess   -> O       0.078828
O      -> Vess    0.050908
Strain -> Vess    -0.002661
Vess   -> Agit    -0.003171
Substrain -> Agit    -0.003952
Strain -> Strain  -0.004944
Agit   -> Strain  -0.006788
Phase  -> Air     -0.007709
Substrain -> Strain  -0.008253
Gversion -> Substrain -0.008254
Substrain -> Gversion -0.009919
Gversion -> Vess    -0.011303
Gversion -> Strain  -0.012243
Strain -> Agit    -0.014898
Substrain -> Anti    -0.016766
Vess   -> Phase   -0.019046
Med    -> Substrain -0.021373
Substrain -> Phase   -0.021405
Med    -> O       -0.023785
Agit   -> Gversion -0.025755
Agit   -> Phase   -0.030406
Agit   -> Anti    -0.030890
pH     -> Substrain -0.032279
pH     -> Strain  -0.032423
Strain -> Gversion -0.032697
O      -> Agit    -0.034086
pH     -> Anti    -0.042486
pH     -> Vess    -0.043935
OD     -> Substrain -0.043991
Temp   -> Strain  -0.044706
OD     -> Vess    -0.045331
Temp   -> Substrain -0.046323
OD     -> Anti    -0.046872
Med    -> Strain  -0.051412
Temp   -> Vess    -0.053030
Strain -> Anti    -0.054204
Med    -> Vess    -0.054468
Vess   -> Med     -0.054804
Vess   -> Technique -0.057243
O      -> Strain  -0.060434
Anti   -> Agit    -0.064632
OD     -> Strain  -0.066234
Temp   -> Agit    -0.069172
Phase  -> Agit    -0.070430
Anti   -> Vess    -0.071067
Vess   -> pH      -0.074913
Phase  -> Strain  -0.075090
Anti   -> Strain  -0.075094
Phase  -> Vess    -0.075976
Vess   -> Gtype   -0.076426
Air    -> Vess    -0.083458
Strain -> Phase   -0.085578
Gversion -> Anti    -0.086083
Phase  -> Substrain -0.087902
OD     -> Phase   -0.089697
Air    -> Strain  -0.091128
O      -> Phase   -0.095617
Technique -> Vess    -0.097642
Temp   -> Phase   -0.099651
Temp   -> Gversion -0.100646
O      -> Gversion -0.101429
OD     -> Gversion -0.102074
Technique -> Strain  -0.102501
pH     -> Phase   -0.106725
Air    -> Substrain -0.108667
Agit   -> pH      -0.109012
Gversion -> Agit    -0.109830
Gtype  -> O       -0.114188
Strain -> Technique -0.114386
Substrain -> OD      -0.114389
Strain -> OD      -0.115596
Strain -> Med     -0.116004
Substrain -> Technique -0.116389
Agit   -> Temp    -0.120333
Vess   -> Air     -0.121084
Gversion -> Phase   -0.122671
Vess   -> Supp    -0.124826
Anti   -> Substrain -0.126141
Phase  -> O       -0.126185
Substrain -> Med     -0.127341
Substrain -> Temp    -0.131526
Vess   -> OD      -0.133304
Vess   -> Temp    -0.134264
Temp   -> Anti    -0.135707
Technique -> O       -0.137590
pH     -> Technique -0.147134
Med    -> Gversion -0.154810
Phase  -> Gversion -0.166308
Substrain -> Air     -0.168637
Air    -> Anti    -0.168687
Agit   -> Med     -0.176116
pH     -> Gtype   -0.176298
pH     -> Gversion -0.177888
Gtype  -> Vess    -0.180194
Agit   -> Vess    -0.182199
Med    -> Anti    -0.183107
Supp   -> Substrain -0.188335
O      -> Anti    -0.188881
Gtype  -> Strain  -0.192685
Anti   -> Gversion -0.194952
Gversion -> Med     -0.195353
Strain -> Air     -0.195467
Agit   -> OD      -0.196715
Agit   -> Gtype   -0.198675
Supp   -> Strain  -0.200662
Med    -> Agit    -0.201004
Technique -> Substrain -0.205740
Temp   -> pH      -0.206332
pH     -> Med     -0.207614
Air    -> Gversion -0.212123
Gversion -> OD      -0.215877
OD     -> Gtype   -0.217055
Med    -> Phase   -0.224585
OD     -> Agit    -0.232837
Anti   -> Phase   -0.241288
O      -> Substrain -0.244537
Strain -> Temp    -0.246888
Technique -> Anti    -0.251721
Gtype  -> Agit    -0.252879
Gversion -> pH      -0.255667
Temp   -> Technique -0.256396
pH     -> OD      -0.259549
Technique -> Phase   -0.262190
Substrain -> pH      -0.270170
Supp   -> Agit    -0.273594
Air    -> pH      -0.280698
Supp   -> Vess    -0.281236
Gtype  -> Substrain -0.300228
pH     -> Air     -0.309339
pH     -> Agit    -0.320650
Med    -> OD      -0.324359
Phase  -> pH      -0.329451
Phase  -> Gtype   -0.330447
Anti   -> pH      -0.333268
Substrain -> Supp    -0.347571
Strain -> Supp    -0.351154
Air    -> Gtype   -0.352211
Med    -> pH      -0.357412
Gversion -> Supp    -0.363564
Temp   -> OD      -0.366875
Agit   -> Supp    -0.367087
pH     -> Supp    -0.367327
Strain -> pH      -0.368713
Gversion -> O       -0.374281
OD     -> pH      -0.375326
Gversion -> Gtype   -0.375517
Temp   -> Supp    -0.375625
Phase  -> Anti    -0.377070
Strain -> Gtype   -0.379184
Temp   -> Gtype   -0.384279
Anti   -> Air     -0.387737
Technique -> Agit    -0.388212
Technique -> Temp    -0.400369
Agit   -> Technique -0.404882
OD     -> Med     -0.436361
Gversion -> Temp    -0.441505
Anti   -> OD      -0.444541
Phase  -> Temp    -0.449977
Phase  -> Supp    -0.480579
Anti   -> Technique -0.488091
Technique -> Gversion -0.492070
Technique -> Med     -0.493742
pH     -> Temp    -0.496151
Med    -> Gtype   -0.505660
Supp   -> Anti    -0.512137
Gtype  -> Temp    -0.513788
Temp   -> Air     -0.515990
Gversion -> Technique -0.518619
Gversion -> Air     -0.522097
Anti   -> Supp    -0.525242
Gtype  -> OD      -0.527395
Supp   -> Phase   -0.540754
Med    -> Technique -0.562774
Anti   -> Gtype   -0.571726
OD     -> Technique -0.579373
Supp   -> Gversion -0.586360
OD     -> Temp    -0.599145
Supp   -> pH      -0.599686
O      -> OD      -0.606183
Med    -> Temp    -0.615943
Med    -> Air     -0.630306
Air    -> Technique -0.635666
Air    -> Med     -0.643731
Gtype  -> Phase   -0.644540
Supp   -> OD      -0.676695
Supp   -> Temp    -0.694590
Anti   -> Med     -0.712971
OD     -> Supp    -0.734283
O      -> Med     -0.778027
Gtype  -> Technique -0.781323
Supp   -> Gtype   -0.799860
Supp   -> Air     -0.813306
Gtype  -> Gversion -0.817040
Technique -> Supp    -0.822879
Air    -> Temp    -0.825159
Gtype  -> Anti    -0.844214
Agit   -> Air     -0.851789
Air    -> OD      -0.860711
Air    -> Supp    -0.914836
Anti   -> Temp    -0.942122
Supp   -> Technique -0.945467
Phase  -> Med     -0.965019
Gtype  -> Med     -1.086777
Technique -> OD      -1.163673
OD     -> Air     -1.182778
Air    -> Agit    -1.185549
Phase  -> Technique -1.212120
Air    -> Phase   -1.251654
Phase  -> OD      -1.370704
Substrain -> O       -1.381827
Temp   -> Med     -1.477168
Technique -> Gtype   -1.551518
O      -> Air     -1.582375
Supp   -> Med     -1.886362
Technique -> pH      -2.211809
Med    -> Supp    -2.298899


Top positive:
8.340810 O        b'lemma:_'
6.285587 Supp     b'lemma:Iron'
5.889637 Air      b'lemma:anaerobic'
5.642899 Strain   b'lemma:k-12'
5.579335 O        b'lemma:1'
5.442570 Technique b'lemma:chipseq'
5.383996 Supp     b'lemma:pq'
5.373463 Phase    b'lemma:stationary'
5.373463 Phase    b'lemma:exponential'
5.345138 Technique b'lemma:ChIP-exo'
5.321754 Phase    b'lemma:mid-log'
5.107746 O        b'lemma:2'
5.027840 O        b'lemma:Cra'
4.872147 Gtype    b'lemma:wt'
4.840735 Supp     b'+1:lemma:\xc2\xb5m'
4.840318 Supp     b'lemma:glucose'
4.674605 Air      b'-1:lemma:ChIP-Seq'
4.631183 O        b'-1:lemma:tag'
4.587132 O        b'lemma:rep2'
4.587132 O        b'lemma:rep1'
4.572847 Supp     b'lemma:2h'
4.572847 Supp     b'-1:lemma:additional'
4.572783 O        b'lemma:3'
4.572755 Gtype    b'lemma:\xce\xb4fur'
4.453200 Gversion b'lemma:asm584v2'
4.445469 Gtype    b'lemma:\xce\xb4cra'
4.336154 Air      b'lemma:aerobically'
4.328954 Gtype    b'lemma:arca8myc'
4.326992 O        b'lemma:b'
4.204776 Supp     b'lemma:acetate'
4.157875 Supp     b'lemma:rifampicin'
4.134350 Supp     b'lemma:nh4cl'
4.114671 Supp     b'lemma:no3'
4.071490 Gtype    b'-1:lemma:\xe2\x88\x86'
4.019654 Supp     b'lemma:dpd'
3.991628 Med      b'lemma:MOPS'
3.948656 Supp     b'-1:lemma:Cra'
3.878674 O        b'lemma:rpob'
3.874695 O        b'-1:lemma:0.3'
3.854166 O        b'postag:VBG'
3.853962 Med      b'lemma:LB'
3.850742 O        b'postag::'
3.833979 O        b'lemma:CEL'
3.815985 Gtype    b'lemma:delta-fnr'
3.815123 Technique b'lemma:rna-seq'
3.792885 Substrain b'lemma:mg1655'
3.732816 O        b'lemma:-'
3.728206 O        b'postag:IN'
3.591989 O        b'+1:lemma:pq'
3.588370 Technique b'lemma:chip-seq'
3.570079 Gtype    b'lemma:delta-arca'
3.568354 Gtype    b'lemma:fnr8myc'
3.567957 O        b'lemma:\xcf\x8332'
3.544803 O        b'lemma:with'
3.517641 Temp     b'lemma:\xc2\xb0c'
3.517418 Gtype    b'lemma:type'
3.509629 Anti     b'lemma:none'
3.494915 O        b'-1:lemma:glucose'
3.436902 Air      b'lemma:aerobic'
3.434756 Technique b'lemma:rnaseq'
3.434713 Air      b'-1:lemma:-'
3.430118 Supp     b'+1:lemma:Deficient'
3.412156 Anti     b'lemma:seqa'
3.403775 Anti     b'lemma:\xcf\x8332'
3.398708 Temp     b'-1:lemma:37'
3.382737 Gtype    b'lemma:\xe2\x88\x86'
3.366166 Air      b'lemma:anaeroibc'
3.336242 O        b'lemma:.'
3.336242 O        b'postag:.'
3.330772 Med      b'lemma:m63'
3.319058 Med      b'+1:lemma:0.4'
3.285468 Vess     b'lemma:flask'
3.285468 Vess     b'-1:lemma:warm'
3.281929 Gtype    b'+1:lemma:type'
3.276846 O        b'postag:VBN'
3.274377 O        b'-1:lemma:lb'
3.268506 Strain   b'+1:lemma:substr'
3.261003 Gversion b'lemma:chip-seq'
3.259560 Technique b'lemma:chip-exo'
3.239779 O        b'lemma:at'
3.227055 Supp     b'lemma:arginine'
3.223350 Supp     b'lemma:iptg'
3.219440 Gtype    b'lemma:dfnr'
3.195711 Gtype    b'lemma:WT'
3.186137 O        b'+1:lemma:od600'
3.180530 Supp     b'lemma:Adenine'
3.171037 OD       b'lemma:od450'
3.165928 Med      b'lemma:lb'
3.155649 Supp     b'lemma:nacl'
3.136421 Med      b'-1:lemma:ml'
3.116940 Air      b'lemma:Anaerobic'
3.113105 Supp     b'lemma:Leu'
3.093419 Temp     b'+1:lemma:\xc2\xb0c'
3.086264 O        b'+1:postag:RB'
3.062830 Supp     b'+1:lemma:1'
3.047966 Supp     b'-1:lemma:+'
3.018865 Supp     b'lemma:Fe'
2.991941 O        b'lemma:affyexp'
2.976929 O        b'lemma:chip-arca'
2.957995 Med      b'lemma:media'
2.947173 Med      b'+1:lemma:2.0'
2.940326 O        b'lemma:argr'
2.927515 Supp     b'+1:lemma:2'
2.927496 O        b'lemma:a'
2.912403 O        b'+1:lemma:wt'
2.905276 O        b'lemma:purr'
2.869479 Gtype    b'lemma:deltaseqa'
2.869479 Gtype    b'-1:lemma:old'
2.859851 Technique b'lemma:ChIP-Seq'
2.843304 Gtype    b'+1:lemma:pq'
2.835661 pH       b'lemma:ph5'
2.835661 pH       b'+1:lemma:.5'
2.829265 O        b'+1:lemma:k-12'
2.824438 O        b'lemma:soxr'
2.824438 O        b'lemma:soxs'
2.814804 Air      b'-1:lemma:co2'
2.803237 O        b'lemma:ompr'
2.788497 Gversion b'lemma:u00096'
2.788497 Gversion b'+1:lemma:.2'
2.784811 Substrain b'+1:lemma:phtpg'
2.769945 O        b'lemma:for'
2.765866 Gtype    b'-1:lemma:nsrr'
2.765866 Gtype    b'+1:lemma:flagtag'
2.759106 Supp     b'+1:lemma:deficient'
2.737718 Supp     b'-1:lemma:sodium'
2.703803 Supp     b'+1:lemma:mm'
2.691433 Gtype    b'lemma:\xce\xb4ompr'
2.685875 Gversion b'lemma:.2'
2.685875 Gversion b'-1:lemma:u00096'
2.676945 O        b'+1:lemma:43'
2.675303 Supp     b'+1:lemma:_'
2.652813 O        b'lemma:trpr'
2.642100 Gtype    b'+1:lemma:ph5'
2.626812 Air      b'postag:RB'
2.626663 Gtype    b'-1:lemma:ptac'
2.622278 Supp     b'+1:lemma:iptg'
2.616903 Supp     b'-1:lemma:with'
2.607432 Agit     b'+1:lemma:rpm'
2.606475 Gtype    b'lemma:\xce\xb4oxyr'
2.601215 Gtype    b'lemma:pk4854'
2.596731 O        b'lemma:gadx'
2.581899 Substrain b'lemma:mg1655star'
2.577324 Med      b'postag:NNP'
2.556570 Gtype    b'lemma:wild-type'
2.540234 O        b'-1:lemma:into'
2.537441 Technique b'-1:lemma:input'
2.533290 O        b'lemma:Lrp'
2.533192 O        b'+1:lemma:250'
2.532001 Supp     b'-1:lemma:potassium'
2.521052 O        b'lemma:chip'
2.509541 O        b'postag:CC'
2.500300 Supp     b'-1:lemma:without'
2.499167 Gtype    b'+1:lemma:with'
2.477885 Temp     b'lemma:43'
2.475993 Supp     b'lemma:leucine'
2.474577 O        b'-1:lemma:anaerobic'
2.453941 Gtype    b'lemma:ptac'
2.437470 pH       b'+1:postag:CD'
2.426262 Technique b'-1:lemma:IP'
2.423022 Phase    b'-1:lemma:until'
2.420677 O        b'-1:lemma:type'
2.419823 O        b'lemma:10'
2.409934 Agit     b'lemma:rpm'
2.409612 Supp     b'-1:lemma:vol'
2.406849 OD       b'-1:lemma:od450'
2.392351 Gversion b'lemma:_'
2.383981 O        b'lemma:s'
2.381719 Technique b'+1:lemma:gadx'
2.377507 O        b'-1:lemma:pq'
2.375964 O        b'-1:postag:NNS'
2.368945 Gtype    b'lemma:wildtype'
2.366582 Vess     b'-1:postag:VBN'
2.356218 O        b'-1:lemma:stpa'
2.352876 Med      b'+1:lemma:+'
2.352328 Med      b'-1:lemma:fresh'
2.349703 Temp     b'-1:lemma:\xcf\x8332'
2.338101 Temp     b'-1:lemma:43'
2.319671 O        b'-1:lemma:ChIP-exo'
2.318550 Gversion b'lemma:nc'
2.313245 O        b'+1:lemma:coli'
2.298882 O        b'-1:lemma:Aerobic'
2.297950 Air      b'-1:postag::'
2.279933 Gtype    b'-1:lemma:phtpg'
2.279561 O        b'lemma:genotype/variation'
2.276300 Gtype    b'lemma:phtpg'
2.276262 O        b'-1:lemma:Anaerobic'
2.275751 Agit     b'-1:lemma:250'
2.262489 Agit     b'lemma:250'
2.249789 O        b'+1:lemma:\xe2\x88\x86'
2.246281 Gtype    b'-1:lemma:rpob'
2.240696 Phase    b'-1:lemma:mid-log'
2.239318 O        b'postag:DT'
2.231867 O        b'lemma:input'
2.231867 O        b'+1:lemma:chip-seq'
2.228535 Gtype    b'lemma:\xce\xb4soxr'
2.224940 Supp     b'lemma:Trp'
2.223801 Gtype    b'+1:lemma:cra'
2.223227 O        b'-1:lemma:nh4cl'
2.212890 Gtype    b'+1:lemma:_'
2.211260 Supp     b'lemma:fructose'
2.204013 O        b'lemma:Genome'
2.199822 Gtype    b'lemma:crp'
2.194011 Technique b'+1:lemma:chip-exo'
2.188246 Supp     b'-1:lemma:ompr'
2.185378 Gtype    b'lemma:\xce\xb4soxs'
2.184277 O        b'lemma:delta'
2.183164 O        b'lemma:oxyr'
2.177001 Supp     b'+1:lemma:leucine'
2.168454 Med      b'-1:lemma:in'
2.148611 O        b'-1:lemma:.5'
2.144774 O        b'lemma:culture'
2.141062 Anti     b'+1:lemma:antibody'
2.138601 O        b'lemma:A'
2.136693 O        b'-1:lemma:acetate'
2.136051 Vess     b'+1:lemma:at'
2.122758 O        b'lemma:lrp'
2.118506 O        b'+1:lemma:ph5'
2.115289 Gtype    b'-1:lemma:_'
2.106220 pH       b'lemma:5.5'
2.102825 pH       b'+1:lemma:5.5'
2.099005 O        b'-1:lemma:min'
2.095423 O        b'lemma:pt7'
2.094689 O        b'lemma:Nac'
2.087189 O        b'lemma:cra'
2.083945 Phase    b'lemma:phase'
2.080506 O        b'lemma:chip-fnr'
2.062968 Supp     b'+1:lemma:hour'
2.052321 Temp     b'-1:lemma:sample'
2.048289 O        b'-1:lemma:grow'
2.047478 O        b'lemma:Fur'
2.039666 Gversion b'lemma:000913'
2.038485 O        b'postag:SYM'
2.037801 Med      b'lemma:medium'
2.025874 Temp     b'lemma:37'
2.023249 OD       b'-1:lemma:~'
2.020356 O        b'-1:lemma:no3'
1.998161 Gtype    b'lemma:\xce\xb4arca'
1.994930 Gtype    b'lemma:gade-8myc'
1.994930 Gtype    b'lemma:\xce\xb4seqa'
1.994473 O        b'-1:lemma:\xc2\xb0c'
1.992803 pH       b'lemma:.5'
1.992803 pH       b'-1:lemma:ph5'
1.986698 pH       b'-1:lemma:ph'
1.985933 Supp     b'-1:lemma:contain'
1.976684 Gtype    b'lemma:ompr-8myc'
1.975554 Gtype    b'lemma:delta-soxr'
1.975554 Gtype    b'lemma:delta-gadx'
1.975554 Gtype    b'lemma:delta-gadw'
1.975554 Gtype    b'lemma:delta-oxyr'
1.975554 Gtype    b'lemma:delta-gade'
1.975554 Gtype    b'lemma:delta-soxs'
1.972751 Anti     b'-1:lemma:fnr'
1.972349 Gtype    b'-1:lemma:wild'
1.971193 O        b'-1:lemma:nacl'
1.970362 O        b'lemma:C'
1.968119 Air      b'-1:lemma:_'
1.967339 O        b'-1:lemma:media'
1.967064 Air      b'lemma:Aerobic'
1.965234 Gversion b'-1:lemma:nc'
1.965234 Gversion b'+1:lemma:000913'
1.959952 O        b'lemma:c'
1.953717 Air      b'postag:JJ'
1.949324 Substrain b'-1:lemma:.'
1.949324 Substrain b'-1:postag:.'
1.948137 Technique b'-1:lemma:1'
1.943173 Technique b'-1:lemma:chip-exo'
1.939446 Air      b'-1:lemma:ryhb'
1.926037 Med      b'+1:postag:CD'
1.925743 OD       b'lemma:0.3'
1.924334 O        b'lemma:one'
1.919037 O        b'+1:lemma:fnr-8myc'
1.908390 O        b'+1:lemma:mid-log'
1.904379 O        b'+1:lemma:30'
1.902923 Med      b'-1:postag:JJ'
1.900741 O        b'lemma:harbor'
1.893824 Supp     b'-1:lemma:final'
1.889272 O        b'-1:lemma:-80'
1.885391 O        b'lemma:ntrc'
1.885391 O        b'lemma:csir'
1.882156 O        b'lemma:ml'
1.880542 O        b'-1:lemma:wt'
1.873283 OD       b'+1:lemma:of'
1.872453 Gtype    b'lemma:wild'
1.860831 Technique b'postag:NNP'
1.856132 O        b'lemma:or'
1.848691 Technique b'+1:lemma:rna-seq'
1.841039 Gversion b'+1:lemma:genome'
1.839104 Supp     b'-1:lemma:\xce\xb4cra'
1.837602 Technique b'-1:lemma:rna-seq'
1.832520 Gtype    b'lemma:purr-8myc'
1.826751 O        b'lemma:growth'
1.825910 Gtype    b'-1:lemma:factor'
1.813306 Supp     b'+1:lemma:min'
1.811273 pH       b'lemma:ph'
1.809848 Gtype    b'-1:lemma:from'
1.808139 Anti     b'-1:lemma:myc'
1.804639 Med      b'lemma:minimal'
1.798983 Gtype    b'+1:postag::'
1.797763 OD       b'-1:lemma:at'
1.790568 Supp     b'-1:lemma:respiration'
1.790568 Supp     b'+1:lemma:mmol'
1.786738 Supp     b'lemma:tryptophan'
1.786738 Supp     b'-1:lemma:mg/l'
1.785903 O        b'-1:lemma:one'
1.781179 Technique b'-1:lemma:_'
1.770681 O        b'-1:lemma:arginine'
1.770471 Gtype    b'lemma:flagtag'
1.768462 Gtype    b'lemma:fur-8myc'
1.768462 Gtype    b'lemma:cra-8myc-tagged'
1.760717 Gtype    b'lemma:lrp-8myc'
1.744373 Anti     b'lemma:anti-myc'
1.743595 O        b'-1:lemma:genotype/variation'
1.741745 Med      b'-1:lemma:LB'
1.739650 O        b'+1:lemma:acetate'
1.728020 O        b'lemma:genotype'
1.720652 Anti     b'-1:lemma::'
1.720460 OD       b'lemma:0.3-0.35'
1.715987 O        b'lemma:600'
1.712938 Med      b'lemma:glucose'
1.712722 pH       b'-1:lemma:at'
1.711757 O        b'-1:lemma:phase'
1.710947 Supp     b'lemma:glutamine'
1.710947 Supp     b'-1:lemma:2g/l'
1.708578 Air      b'-1:lemma:cm20'
1.706374 Supp     b'lemma:of'
1.701730 Gtype    b'-1:postag:VBG'
1.692844 O        b'-1:lemma:fructose'
1.692775 OD       b'lemma:of'
1.686974 Gtype    b'lemma:fnr-8myc'
1.685303 Anti     b'lemma:anti-rpob'
1.682519 O        b'-1:lemma:l1'
1.680385 OD       b'+1:postag:IN'
1.670973 Anti     b'lemma:anti-rpos'
1.667428 O        b'-1:lemma:shake'
1.665953 O        b'lemma:2-3'
1.662740 Gtype    b'-1:postag:VBP'
1.659078 O        b'+1:lemma:sparging'
1.652410 Gtype    b'lemma:nsrr'
1.649356 O        b'+1:lemma:dpd'
1.649281 Gtype    b'+1:lemma:control'
1.636873 O        b'+1:lemma::'
1.632466 Supp     b'-1:lemma:soxr'
1.632466 Supp     b'-1:lemma:soxs'
1.625137 O        b'+1:lemma:20'
1.621510 O        b'-1:lemma:0.3-0.35'
1.619497 O        b'+1:lemma:o.d.'
1.618615 Med      b'+1:lemma:-lrb-'
1.618165 Technique b'lemma:-rrb-'
1.609053 Air      b'-1:postag:NN'
1.597925 Supp     b'-1:lemma:30'
1.596223 Med      b'+1:postag:-LRB-'
1.594389 Gtype    b'lemma:\xce\xb4gadw'
1.594389 Gtype    b'lemma:\xce\xb4gadx'
1.594158 Gtype    b'lemma:\xce\xb4gade'
1.587242 O        b'+1:lemma:wash'
1.586659 Gtype    b'lemma:oxyr-8myc'
1.586659 Gtype    b'lemma:soxr-8myc'
1.586659 Gtype    b'lemma:soxs-8myc'
1.583486 O        b'-1:lemma:induce'
1.577737 O        b'+1:lemma:minute'
1.577195 Supp     b'-1:lemma:mm'
1.572430 Supp     b'lemma:30'
1.552861 O        b'+1:postag:NNP'
1.548046 O        b'lemma:agitation'
1.546359 O        b'lemma:-lrb-'
1.539298 Strain   b'-1:lemma:.'
1.539298 Strain   b'-1:postag:.'
1.536309 O        b'-1:lemma:medium'
1.533302 Supp     b'lemma:in'
1.531615 Gtype    b'+1:lemma:fructose'
1.524056 O        b'-1:lemma:aerobic'
1.514015 O        b'-1:lemma:dpd'
1.513753 Technique b'lemma:ChIPSeq'
1.513493 Supp     b'lemma:sodium'
1.512506 O        b'+1:lemma:um'
1.507171 Technique b'lemma:-lrb-'
1.503516 Technique b'postag:-LRB-'
1.497093 Gtype    b'+1:lemma:small'
1.494793 Gtype    b'-1:lemma::'
1.491435 Supp     b'-1:lemma:cra'
1.485218 O        b'lemma::'
1.477431 O        b'lemma:antibody'
1.475209 O        b'-1:lemma:4'
1.466548 O        b'lemma:additional'
1.466548 O        b'+1:lemma:2h'
1.456385 Supp     b'lemma:cm20'
1.456385 Supp     b'-1:lemma:\xc2\xb5l'
1.452923 OD       b'lemma:od600'
1.452653 Gtype    b'+1:lemma:knock-out'
1.451173 O        b'lemma:ecolus'
1.450891 O        b'lemma:-80'
1.445756 OD       b'-1:postag:IN'
1.444284 Supp     b'-1:lemma:m'
1.433247 O        b'lemma:contain'
1.432495 Air      b'+1:lemma:b'
1.429937 Supp     b'+1:lemma:anaerobically'
1.425121 O        b'+1:lemma:0.2'
1.423140 Gtype    b'-1:lemma:knock-out'
1.418978 Gtype    b'+1:lemma:the'
1.415707 Supp     b'lemma:final'
1.413966 O        b'postag:NNS'
1.409262 O        b'+1:postag:VBZ'
1.405224 OD       b'postag:CD'
1.400130 Air      b'+1:lemma:at'
1.399277 Temp     b'+1:lemma:and'
1.398804 Supp     b'-1:lemma:1m'
1.397600 Supp     b'-1:lemma:2'
1.397059 O        b'+1:lemma:fructose'
1.395834 Anti     b'-1:postag::'
1.392887 OD       b'+1:lemma:,'
1.392887 OD       b'+1:postag:,'
1.391068 OD       b'+1:lemma:0.3'
1.382317 Med      b'-1:lemma:w2'
1.378259 O        b'+1:lemma:nacl'
1.372046 OD       b'lemma:o.d.'
1.372046 OD       b'+1:lemma:600nm'
1.365373 O        b'+1:lemma:m9'
1.364863 Supp     b'lemma:2g/l'
1.364863 Supp     b'+1:lemma:glutamine'
1.361220 Supp     b'+1:lemma:and'
1.355227 Med      b'+1:lemma:with'
1.354417 O        b'-1:lemma:2-3'
1.351779 Anti     b'-1:lemma:monoclonal'
1.351658 O        b'lemma:to'
1.351658 O        b'postag:TO'
1.344960 Technique b'+1:lemma:Anaerobic'
1.344061 O        b'-1:lemma:nitrate'
1.334726 Supp     b'-1:lemma:\xc2\xb5m'
1.334337 Med      b'+1:lemma:g/l'
1.332582 Gtype    b'lemma:ryhb'
1.331782 Supp     b'+1:lemma:phosphate'
1.330941 Technique b'+1:postag:NN'
1.330383 Med      b'+1:lemma:minimal'
1.329829 Gtype    b'-1:lemma:harbor'
1.329624 O        b'lemma:IP'
1.325037 O        b'+1:postag::'
1.321657 Gversion b'-1:postag:DT'
1.321376 Supp     b'lemma:phosphate'
1.319320 Supp     b'-1:postag:IN'
1.319288 Phase    b'+1:lemma:culture'
1.316172 O        b'-1:lemma:rpm'
1.314956 O        b'lemma:induction'
1.314640 Anti     b'+1:lemma:-lrb-'
1.313494 O        b'-1:lemma:mg1655'
1.302957 Air      b'+1:lemma:%'
1.300586 Gversion b'postag:CD'
1.299078 Anti     b'+1:postag:-LRB-'
1.298720 Supp     b'-1:lemma:0.2'
1.293559 O        b'lemma:+'
1.289242 Supp     b'+1:lemma:1m'
1.288340 O        b'-1:lemma:after'
1.287534 Technique b'postag:-RRB-'
1.280268 pH       b'-1:postag:NN'
1.276814 Anti     b'lemma:tag'
1.271328 O        b'-1:lemma:.2'
1.269345 O        b'+1:lemma:read'
1.265807 Supp     b'+1:lemma:\xc2\xb5l'
1.264612 Gtype    b'-1:lemma:Wild'
1.264508 O        b'lemma:EB'
1.263941 O        b'lemma:fresh'
1.261508 Air      b'+1:lemma:C'
1.259921 Anti     b'+1:lemma:from'
1.259279 Gtype    b'-1:lemma:vector'
1.258217 Supp     b'lemma:nitrate'
1.256259 Temp     b'+1:lemma:short'
1.253790 O        b'lemma:escherichia'
1.251444 O        b'-1:lemma:genotype'
1.240497 Phase    b'postag:NN'
1.236258 O        b'+1:postag:VBN'
1.228993 Phase    b'-1:lemma::'
1.228399 O        b'lemma:shake'
1.226217 O        b'-1:postag:NN'
1.224452 Supp     b'-1:lemma:_'
1.221236 OD       b'+1:lemma:0.3-0.35'
1.220438 O        b'lemma:genome'
1.218654 Air      b'lemma:%'
1.217334 O        b'lemma:respiration'
1.208041 Gtype    b'+1:lemma::'
1.199590 Supp     b'lemma:1m'
1.197355 Supp     b'lemma:feso4'
1.196816 O        b'+1:lemma:aerobically'
1.196720 Supp     b'+1:postag:NNS'
1.193492 Gversion b'+1:postag:CD'
1.191741 O        b'+1:lemma:ChIP-Seq'
1.190715 O        b'+1:lemma:or'
1.190704 Gtype    b'lemma:knock-out'
1.181616 Supp     b'-1:lemma:\xce\xb4ompr'
1.180993 OD       b'-1:lemma:600nm'
1.179323 O        b'+1:lemma:37'
1.174540 Vess     b'+1:postag:IN'
1.174007 Air      b'+1:lemma:or'
1.172913 Supp     b'+1:lemma:1/100'
1.172464 Phase    b'lemma:pahse'
1.167927 Gversion b'-1:lemma:the'
1.167474 Temp     b'+1:postag:JJ'
1.166451 OD       b'-1:lemma:od600'
1.160714 Med      b'+1:lemma:2'
1.159531 pH       b'+1:lemma:.'
1.159531 pH       b'+1:postag:.'
1.159404 Supp     b'+1:lemma:mg/l'


Top negative:
0.020280 O        b'+1:lemma:Adenine'
0.020230 O        b'-1:lemma:lrp'
0.020087 O        b'lemma:density'
0.019868 O        b'-1:lemma:nuclease'
0.019702 O        b'lemma:interval'
0.019702 O        b'-1:lemma:second'
0.019549 Gtype    b'lemma:fnr'
0.019516 O        b'lemma:stir'
0.019505 O        b'lemma:fur-8-myc'
0.019042 O        b'lemma:mismatch'
0.018983 O        b'+1:lemma:into'
0.018634 O        b'-1:lemma:File'
0.018465 O        b'-1:lemma:antibody-protein-dna'
0.018211 O        b'+1:lemma:overnight'
0.018105 O        b'+1:lemma:mapping'
0.017828 O        b'lemma:tex'
0.017753 O        b'-1:lemma:sds'
0.017649 O        b'lemma:1:100'
0.016940 O        b'-1:lemma:-lsb-'
0.016940 O        b'+1:lemma:vs'
0.016878 O        b'lemma:output'
0.016528 O        b'+1:lemma:anti-rpos'
0.016470 O        b'-1:lemma:than'
0.016470 O        b'+1:lemma:mismatch'
0.015948 O        b'lemma:crosslink'
0.015759 O        b'+1:lemma:600'
0.015686 O        b'+1:lemma:anti-rpob'
0.015541 O        b'-1:lemma:g'
0.015452 O        b'-1:lemma:paraquat'
0.015147 O        b'+1:lemma:inoculate'
0.015053 O        b'+1:lemma:Supplemental'
0.015043 O        b'+1:lemma:complex'
0.014898 O        b'lemma:sequence'
0.014625 O        b'-1:lemma:al'
0.014516 O        b'+1:lemma:crosslinking'
0.014511 O        b'lemma:pcr'
0.014511 O        b"-1:lemma:'s"
0.014511 O        b'-1:postag:POS'
0.014511 O        b'+1:lemma:purification'
0.014390 O        b'-1:lemma:Keseler'
0.014193 O        b'+1:lemma:anti-myc'
0.013976 Supp     b'+1:lemma:final'
0.013695 O        b'lemma:sparging'
0.013414 O        b'+1:lemma:carbon'
0.013357 OD       b'postag:NN'
0.013284 O        b'-1:lemma:normalization'
0.012988 O        b'-1:lemma:substr'
0.012874 O        b'+1:lemma:nitrogen'
0.012839 O        b'-1:lemma:bp'
0.012838 O        b'-1:lemma:Li'
0.012475 O        b'lemma:incubate'
0.012368 O        b'lemma:sequencing'
0.012130 O        b'+1:lemma:analysis'
0.012073 O        b'-1:lemma:5000'
0.011921 O        b'+1:lemma:dtt'
0.011547 O        b'+1:lemma:allow'
0.011321 O        b'+1:lemma:4'
0.011292 O        b'lemma:str'
0.011180 O        b'-1:lemma:mapping'
0.010989 O        b'lemma:further'
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