report_Run16_v12.txt 36.9 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.20503295269610408, 'c2': 0.009131358726044252}
best CV score:0.8544270978232358
model size: 0.11M

Flat F1: 0.8227463921433016
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      1.000     0.800     0.889        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.857     0.923        21
        Air      0.596     0.602     0.599        88
       Anti      0.929     1.000     0.963        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.910     0.782     0.841        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.870     0.838     0.854       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.859     0.793     0.823       484


Top likely transitions:
Temp   -> Temp    6.473155
OD     -> OD      6.131338
Med    -> Med     6.099579
Anti   -> Anti    5.379899
Phase  -> Phase   4.939646
Gversion -> Gversion 4.816766
Technique -> Technique 4.765083
Gtype  -> Gtype   4.590333
Supp   -> Supp    4.506082
pH     -> pH      4.348294
Agit   -> Agit    4.038973
Air    -> Air     3.655022
O      -> O       2.379867
Substrain -> Gtype   1.524003
Technique -> Air     0.543138
Gtype  -> Supp    0.360498
O      -> Technique 0.248208
Temp   -> O       0.200939
Med    -> O       0.077876
Air    -> O       0.028935
Gtype  -> pH      0.002800
Phase  -> OD      -0.000066
Anti   -> O       -0.000848
O      -> Phase   -0.001448
Air    -> Supp    -0.033014
Supp   -> Med     -0.093978
O      -> Gtype   -0.121125
OD     -> Air     -0.179636
Technique -> O       -0.218291
OD     -> O       -0.224163
Phase  -> O       -0.267497
O      -> OD      -0.282541
O      -> Supp    -0.367514
Supp   -> O       -0.415980
O      -> Med     -0.474772
O      -> Anti    -0.562925
O      -> Temp    -0.733202
Technique -> pH      -0.931826
Substrain -> O       -1.463989
Med    -> Supp    -1.544257
Gtype  -> O       -1.808906
O      -> Air     -2.398856


Top unlikely transitions:
Temp   -> Temp    6.473155
OD     -> OD      6.131338
Med    -> Med     6.099579
Anti   -> Anti    5.379899
Phase  -> Phase   4.939646
Gversion -> Gversion 4.816766
Technique -> Technique 4.765083
Gtype  -> Gtype   4.590333
Supp   -> Supp    4.506082
pH     -> pH      4.348294
Agit   -> Agit    4.038973
Air    -> Air     3.655022
O      -> O       2.379867
Substrain -> Gtype   1.524003
Technique -> Air     0.543138
Gtype  -> Supp    0.360498
O      -> Technique 0.248208
Temp   -> O       0.200939
Med    -> O       0.077876
Air    -> O       0.028935
Gtype  -> pH      0.002800
Phase  -> OD      -0.000066
Anti   -> O       -0.000848
O      -> Phase   -0.001448
Air    -> Supp    -0.033014
Supp   -> Med     -0.093978
O      -> Gtype   -0.121125
OD     -> Air     -0.179636
Technique -> O       -0.218291
OD     -> O       -0.224163
Phase  -> O       -0.267497
O      -> OD      -0.282541
O      -> Supp    -0.367514
Supp   -> O       -0.415980
O      -> Med     -0.474772
O      -> Anti    -0.562925
O      -> Temp    -0.733202
Technique -> pH      -0.931826
Substrain -> O       -1.463989
Med    -> Supp    -1.544257
Gtype  -> O       -1.808906
O      -> Air     -2.398856


Top positive:
6.254628 Anti     b'-2:lemma:antibody'
5.178817 Gtype    b'hGreek'
4.780697 Phase    b'-2:lemma:phase'
4.622695 O        b'-2:lemma:_'
4.522704 Air      b'word:Aerobic'
4.086867 O        b'+2:lemma:\xc2\xb0c'
4.014600 Air      b'lemma:anaerobic'
3.929078 Air      b'word:Anaerobic'
3.899765 Gtype    b'lemma:type'
3.899765 Gtype    b'word:type'
3.834832 O        b'lemma:_'
3.834832 O        b'word:_'
3.711274 Med      b'word:LB'
3.697786 Gtype    b'word:WT'
3.672478 Supp     b'-2:lemma:shake'
3.650249 Gtype    b'-2:lemma:genotype/variation'
3.505827 O        b'postag::'
3.470586 Supp     b'lemma:nh4cl'
3.365332 Technique b'word:ChIPSeq'
3.337012 Gtype    b'-2:lemma:affyexp'
3.175576 O        b'-1:postag:NNS'
3.094030 Gtype    b'lemma:wt'
3.007637 O        b'lemma:1'
3.007637 O        b'word:1'
2.961298 O        b'word:Cra'
2.953322 Substrain b'-2:lemma:substr'
2.878977 O        b'postag:VBG'
2.825666 O        b'-1:lemma:lb'
2.807842 Gtype    b'-2:lemma:genotype'
2.778848 Supp     b'-1:ner:SUPP'
2.756831 O        b'-2:lemma:flagtag'
2.755194 Technique b'word:ChIP-exo'
2.741262 O        b'lemma:2'
2.741262 O        b'word:2'
2.700247 Gtype    b'+1:lemma:type'
2.700247 Gtype    b'+1:word:type'
2.691138 Supp     b'lemma:pq'
2.691138 Supp     b'word:PQ'
2.652918 Supp     b'-2:lemma:media'
2.648162 Technique b'word:ChIP-Seq'
2.617964 O        b'+1:postag:RB'
2.614894 Supp     b'lemma:no3'
2.614894 Supp     b'word:NO3'
2.605024 O        b'lemma:-'
2.605024 O        b'word:-'
2.582680 Supp     b'+2:lemma:rifampicin'
2.568985 Med      b'lemma:MOPS'
2.568985 Med      b'word:MOPS'
2.553330 Gtype    b'-1:ner:GEN'
2.540907 Supp     b'lemma:Iron'
2.540907 Supp     b'word:Iron'
2.540907 Supp     b'+1:word:Deficient'
2.540907 Supp     b'-2:lemma:Anaerobic'
2.529309 O        b'lemma:3'
2.529309 O        b'word:3'
2.501721 Supp     b'+1:lemma:\xc2\xb5m'
2.501721 Supp     b'+1:word:\xc2\xb5M'
2.445387 Technique b'lemma:chipseq'
2.423959 O        b'lemma:.'
2.423959 O        b'postag:.'
2.423959 O        b'word:.'
2.416108 Phase    b'postag:NN'
2.402609 Technique b'+2:lemma:ph5'
2.360577 O        b'postag:IN'
2.335309 Gtype    b'lemma:pk4854'
2.335309 Gtype    b'word:PK4854'
2.325397 O        b'-2:lemma:myc'
2.316188 Med      b'+2:postag:CC'
2.256471 O        b'word:A'
2.240762 Strain   b'lemma:k-12'
2.240762 Strain   b'word:K-12'
2.221775 Supp     b'+2:lemma:iptg'
2.163863 O        b'+2:lemma:crp'
2.146640 Technique b'lemma:rna-seq'
2.141791 Air      b'lemma:aerobically'
2.141791 Air      b'word:aerobically'
2.132703 Technique b'hUpper'
2.129393 O        b'-1:word:Anaerobic'
2.128315 O        b'lemma:rpob'
2.128315 O        b'word:RpoB'
2.078941 Anti     b'-2:lemma:polymerase'
2.078317 Phase    b'lemma:mid-log'
2.078317 Phase    b'word:mid-log'
2.074911 pH       b'+1:postag:CD'
2.046550 O        b'-1:lemma:tag'
1.964628 Gversion b'lemma:chip-seq'
1.961918 Supp     b'lemma:arginine'
1.940386 O        b'-1:word:tag'
1.934579 Supp     b'-2:lemma:for'
1.931268 Supp     b'+1:word:was'
1.852054 Gtype    b'+1:postag::'
1.841698 Gversion b'word:ChIP-Seq'
1.840071 O        b'lemma:b'
1.840071 O        b'word:B'
1.836958 Air      b'postag:RB'
1.825161 O        b'+1:word:ChIP-Seq'
1.813328 Supp     b'lemma:2h'
1.813328 Supp     b'-1:lemma:additional'
1.813328 Supp     b'word:2h'
1.813328 Supp     b'-1:word:additional'
1.802276 Supp     b'lemma:iptg'
1.802276 Supp     b'word:IPTG'
1.783316 Supp     b'-1:word:Cra'
1.763624 O        b'+1:ner:MED'
1.760457 Med      b'+2:lemma:b2'
1.746334 Air      b'-1:lemma:-'
1.746334 Air      b'-1:word:-'
1.744399 Temp     b'+1:lemma:\xc2\xb0c'
1.744399 Temp     b'+1:word:\xc2\xb0C'
1.732915 O        b'-2:lemma:='
1.730141 O        b'lemma:with'
1.730141 O        b'word:with'
1.714547 Med      b'-2:postag:JJ'
1.714245 Substrain b'lemma:mg1655'
1.714245 Substrain b'word:MG1655'
1.711990 O        b'-1:word:Aerobic'
1.709710 O        b'-2:lemma:medium'
1.696615 Supp     b'lemma:nacl'
1.696615 Supp     b'word:NaCl'
1.636882 Phase    b'-2:lemma:until'
1.633195 O        b'word:OmpR'
1.614617 Supp     b'lemma:Adenine'
1.614617 Supp     b'word:Adenine'
1.602008 O        b'+1:lemma:wt'
1.594866 Med      b'isUpper'
1.585327 Gtype    b'postag:JJ'
1.583065 O        b'postag:VBN'
1.582861 O        b'+1:word:WT'
1.559727 O        b'lemma:a'
1.517276 Gtype    b'lemma:dfnr'
1.517276 Gtype    b'word:dFNR'
1.516667 Gtype    b'-2:lemma:delta'
1.515478 Temp     b'-1:word:sample'
1.504837 Gtype    b'lemma:\xe2\x88\x86'
1.504837 Gtype    b'word:\xe2\x88\x86'
1.475115 Temp     b'-1:lemma:sample'
1.470354 Air      b'word:anaerobic'
1.467527 Air      b'postag:JJ'
1.455086 Supp     b'-1:postag:CD'
1.454879 Air      b'-1:lemma:co2'
1.454879 Air      b'-1:word:CO2'
1.451011 O        b'-2:lemma:overnight'
1.447038 Technique b'lemma:rnaseq'
1.447038 Technique b'word:RNASeq'
1.413833 O        b'-2:lemma:fructose'
1.411417 Air      b'-1:lemma:ChIP-Seq'
1.411417 Air      b'-1:word:ChIP-Seq'
1.393522 Air      b'-2:lemma:IP'
1.391399 Air      b'-2:lemma:0.3'
1.391322 O        b'lemma:culture'
1.387654 Supp     b'-2:lemma:argr'
1.387629 O        b'+1:postag:NNP'
1.386869 pH       b'lemma:ph5'
1.386869 pH       b'+1:lemma:.5'
1.386869 pH       b'word:pH5'
1.386869 pH       b'+1:word:.5'
1.378567 Med      b'+2:lemma:+'
1.371944 Air      b'lemma:aerobic'
1.362111 Technique b'-2:lemma:wt'
1.361530 Gtype    b'-1:lemma:\xe2\x88\x86'
1.361530 Gtype    b'-1:word:\xe2\x88\x86'
1.359642 O        b'lemma:chip'
1.356571 O        b'lemma:at'
1.344765 Med      b'lemma:media'
1.344765 Med      b'word:media'
1.343411 O        b'-1:lemma:type'
1.343411 O        b'-1:word:type'
1.331241 Med      b'+2:lemma:b1'
1.329959 Gtype    b'-1:postag:VBP'
1.310531 O        b'lemma:harbor'
1.310531 O        b'word:harboring'
1.305410 Gtype    b'hUpper'
1.295004 Med      b'lemma:minimal'
1.295004 Med      b'word:minimal'
1.282438 Temp     b'lemma:43'
1.282438 Temp     b'word:43'
1.281866 Air      b'-2:lemma:fnr'
1.280475 Supp     b'postag:NNP'
1.278975 Substrain b'+1:lemma:phtpg'
1.278975 Substrain b'+1:word:PhtpG'
1.275390 Temp     b'-2:lemma:\xcf\x8332'
1.259608 Supp     b'-2:lemma:induce'
1.257995 Phase    b'-1:lemma:mid-log'
1.257995 Phase    b'-1:word:mid-log'
1.252093 Supp     b'-1:lemma:+'
1.252093 Supp     b'-1:word:+'
1.251990 Supp     b'-2:lemma:20'
1.251399 Supp     b'-1:lemma:with'
1.251399 Supp     b'-1:word:with'
1.246571 Supp     b'lemma:Leu'
1.246571 Supp     b'word:Leu'
1.246571 Supp     b'-2:lemma:Lrp'
1.246094 O        b'+1:lemma:fnr-8myc'
1.246094 O        b'+1:word:Fnr-8myc'
1.245574 Gtype    b'lemma:wild-type'
1.242953 Gtype    b'+2:lemma:glucose'
1.238339 Supp     b'-2:postag:VBG'
1.235084 Air      b'lemma:anaeroibc'
1.235084 Air      b'word:Anaeroibc'
1.233715 Supp     b'lemma:acetate'
1.233715 Supp     b'word:acetate'
1.221769 Gversion b'-2:lemma:build'
1.219943 Supp     b'lemma:fructose'
1.219943 Supp     b'word:fructose'
1.219113 Gtype    b'-1:lemma:nsrr'
1.219113 Gtype    b'+1:lemma:flagtag'
1.219113 Gtype    b'-1:word:NsrR'
1.219113 Gtype    b'+1:word:Flagtag'
1.217395 Vess     b'lemma:flask'
1.217395 Vess     b'-1:lemma:warm'
1.217395 Vess     b'word:flask'
1.217395 Vess     b'-1:word:warmed'
1.217395 Vess     b'-2:lemma:pre'
1.217395 Vess     b'+2:lemma:43'
1.215715 Med      b'lemma:m63'
1.215715 Med      b'word:M63'
1.208121 Gversion b'lemma:asm584v2'
1.208121 Gversion b'word:ASM584v2'
1.196832 O        b'+1:lemma:pq'
1.196832 O        b'+1:word:PQ'
1.188946 O        b'symb'
1.187690 OD       b'+1:postag:IN'
1.163898 Gtype    b'-1:postag:VBG'
1.161101 O        b'lemma:genotype/variation'
1.161101 O        b'word:genotype/variation'
1.158404 Supp     b'+1:lemma:1'
1.158404 Supp     b'+1:word:1'
1.158218 O        b'+1:lemma:coli'
1.158218 O        b'+1:word:coli'
1.149093 Air      b'-2:lemma:cm20'
1.146438 O        b'-1:word:ChIP-exo'
1.135920 O        b'lemma:rep2'
1.135920 O        b'word:rep2'
1.135920 O        b'lemma:rep1'
1.135920 O        b'word:rep1'
1.116362 Supp     b'-1:postag:IN'
1.115401 O        b'+1:lemma:od600'
1.115401 O        b'+1:word:OD600'
1.094119 Supp     b'+1:lemma:2'
1.094119 Supp     b'+1:word:2'
1.085997 Supp     b'lemma:dpd'
1.085997 Supp     b'word:DPD'
1.083216 O        b'-1:lemma:\xc2\xb0c'
1.083216 O        b'-1:word:\xc2\xb0C'
1.078840 O        b'-2:lemma:250'
1.067225 O        b'-2:lemma:\xe2\x88\x86'
1.060657 O        b'postag:CC'
1.060418 Air      b'-2:lemma:%'
1.059127 Gversion b'lemma:u00096'
1.059127 Gversion b'+1:lemma:.2'
1.059127 Gversion b'word:U00096'
1.059127 Gversion b'+1:word:.2'
1.055121 O        b'lemma::'
1.055121 O        b'word::'
1.050397 O        b'-1:lemma:0.3'
1.050397 O        b'-1:word:0.3'
1.049301 OD       b'lemma:0.3'
1.049301 OD       b'word:0.3'
1.046913 OD       b'lemma:od450'
1.046913 OD       b'word:OD450'
1.046913 OD       b'-1:word:At'
1.046271 Temp     b'lemma:37'
1.046271 Temp     b'word:37'
1.043748 Med      b'+1:lemma:0.4'
1.043748 Med      b'+1:word:0.4'
1.041096 Supp     b'-1:lemma:Cra'
1.040758 Temp     b'lemma:\xc2\xb0c'
1.040758 Temp     b'word:\xc2\xb0C'
1.038957 Anti     b'+1:lemma:antibody'
1.038957 Anti     b'+1:word:antibody'
1.035169 Gversion b'lemma:000913'
1.035169 Gversion b'word:000913'
1.035169 Gversion b'-2:lemma:nc'
1.033640 Technique b'-1:lemma:_'
1.033640 Technique b'-1:word:_'
1.029443 Technique b'lemma:ChIP-exo'
1.028830 O        b'-1:lemma:glucose'
1.028830 O        b'-1:word:glucose'
1.013452 Supp     b'+2:lemma:feso4'
1.011823 Air      b'+2:lemma:%'
1.010401 Med      b'lemma:medium'
1.010401 Med      b'word:medium'
1.008235 O        b'-2:ner:MED'
0.994561 OD       b'-2:lemma:od450'
0.982585 O        b'lemma:Cra'
0.978003 O        b'+2:postag:JJ'
0.974425 O        b'+2:ner:_'
0.973781 Technique b'-2:postag:NNP'
0.973684 OD       b'+2:lemma:0.3'
0.972724 OD       b'-1:postag:IN'
0.970049 Supp     b'+2:lemma:-lrb-'
0.960690 Agit     b'lemma:rpm'
0.960690 Agit     b'word:rpm'
0.960034 OD       b'lemma:od600'
0.960034 OD       b'word:OD600'
0.956992 OD       b'+1:lemma:of'
0.956992 OD       b'+1:word:of'
0.950638 O        b'word:C'
0.938724 Agit     b'-1:lemma:250'
0.938724 Agit     b'-1:word:250'
0.928817 Vess     b'+1:lemma:at'
0.928817 Vess     b'+1:word:at'
0.927511 Supp     b'-2:lemma:10'
0.926819 O        b'-1:lemma:-80'
0.926819 O        b'-1:word:-80'
0.924530 O        b'lemma:purr'
0.924530 O        b'word:PurR'
0.924323 O        b'+1:lemma:0.2'
0.924323 O        b'+1:word:0.2'
0.923139 Supp     b'+2:lemma:add'
0.917306 Air      b'-1:lemma:%'
0.917306 Air      b'-1:word:%'
0.906305 Substrain b'lemma:mg1655star'
0.906305 Substrain b'word:MG1655star'
0.905722 Supp     b'-2:lemma:pahse'
0.895122 O        b'-2:lemma:od600'
0.893488 Temp     b'-2:lemma:keep'
0.891597 Supp     b'+2:postag:-LRB-'
0.888204 Strain   b'+1:lemma:substr'
0.888204 Strain   b'+1:word:substr'
0.888204 Strain   b'-2:lemma:str'
0.885087 O        b'-2:lemma:~'
0.880156 Supp     b'+2:postag:IN'
0.875637 Gtype    b'hLower'
0.873079 Gtype    b'lemma:arca8myc'
0.873079 Gtype    b'word:ArcA8myc'
0.873079 Gtype    b'-2:lemma:chip-arca'
0.871026 Temp     b'-1:lemma:37'
0.871026 Temp     b'-1:word:37'
0.866660 Gtype    b'lemma:\xce\xb4fur'
0.866660 Gtype    b'word:\xce\x94fur'
0.865571 Gtype    b'+2:ner:SUPP'
0.865111 O        b'-1:lemma:mg1655'
0.865111 O        b'-1:word:MG1655'
0.862986 O        b'lemma:for'
0.860508 Gversion b'lemma:.2'
0.860508 Gversion b'-1:lemma:u00096'
0.860508 Gversion b'word:.2'
0.860508 Gversion b'-1:word:U00096'
0.858425 Med      b'lemma:LB'
0.855303 O        b'lemma:CEL'
0.855303 O        b'word:CEL'
0.848903 Supp     b'-1:lemma:_'
0.848903 Supp     b'-1:word:_'
0.847226 O        b'-2:lemma:min'
0.845449 Supp     b'lemma:glucose'
0.845449 Supp     b'word:glucose'
0.840739 Gversion b'postag:NN'
0.838669 Med      b'-2:lemma:minimal'
0.836662 O        b'lemma:chip-fnr'
0.836662 O        b'word:chip-Fnr'
0.836662 O        b'+2:lemma:fnr8myc'
0.834397 Substrain b'+2:lemma::'
0.832568 Supp     b'lemma:rifampicin'
0.832568 Supp     b'word:rifampicin'
0.828741 O        b'postag:-RRB-'
0.820167 Supp     b'lemma:20'
0.820167 Supp     b'word:20'
0.819749 O        b'-1:ner:_'
0.817343 Med      b'+2:lemma:then'
0.811062 Gtype    b'-2:lemma:ecolus'
0.808859 O        b'-1:lemma:wt'
0.808699 Phase    b'+2:lemma:o.d.'
0.806045 O        b'+1:lemma:250'
0.806045 O        b'+1:word:250'
0.804822 O        b'+1:lemma:rifampicin'
0.804822 O        b'+1:word:rifampicin'
0.802450 Agit     b'+1:lemma:rpm'
0.802450 Agit     b'+1:word:rpm'
0.801540 Gtype    b'+1:lemma:_'
0.801540 Gtype    b'+1:word:_'
0.799319 Gtype    b'-1:lemma:rpob'
0.799319 Gtype    b'-1:word:RpoB'
0.798102 O        b'isLower'
0.793659 Temp     b'-1:lemma:\xcf\x8332'
0.793659 Temp     b'-1:word:\xcf\x8332'
0.791365 Agit     b'+2:lemma:at'
0.787750 O        b'lemma:\xcf\x8332'
0.787750 O        b'word:\xcf\x8332'
0.783276 Supp     b'-1:lemma:vol'
0.783276 Supp     b'-1:word:vol'
0.783276 Supp     b'-2:lemma:1/100'
0.783276 Supp     b'+2:lemma:1m'
0.780332 O        b'-2:lemma:in'
0.774718 Supp     b'lemma:Fe'
0.774718 Supp     b'word:Fe'
0.773679 Gtype    b'-2:postag:JJ'
0.771373 O        b'+2:lemma:buffer'
0.767920 Air      b'-2:lemma:nh4cl'
0.767185 O        b'+1:postag:VBN'
0.765972 Anti     b'+2:lemma:antibody'
0.760214 Gversion b'+1:postag:CD'
0.758082 Agit     b'lemma:250'
0.758082 Agit     b'word:250'
0.757855 Air      b'+2:lemma:37'
0.757429 O        b'lemma:trpr'
0.757429 O        b'word:TrpR'
0.746490 Gtype    b'lemma:deltaseqa'
0.746490 Gtype    b'-1:lemma:old'
0.746490 Gtype    b'word:deltaSeqA'
0.746490 Gtype    b'-1:word:old'
0.746490 Gtype    b'-2:lemma:seqa'
0.739442 OD       b'postag:IN'
0.734880 O        b'+2:lemma:aerobically'
0.734385 Supp     b'+2:lemma:be'
0.734378 O        b'lemma:chip-arca'
0.734378 O        b'word:chip-ArcA'
0.734378 O        b'+2:lemma:arca8myc'
0.730993 Agit     b'-2:lemma:aerobically'
0.729503 Supp     b'postag:NN'
0.721119 Temp     b'-1:lemma:43'
0.721119 Temp     b'-1:word:43'
0.716581 pH       b'lemma:5.5'
0.716581 pH       b'word:5.5'
0.711130 Gtype    b'word:the'
0.711006 Substrain b'+2:postag::'
0.709459 Air      b'+1:lemma:%'
0.709459 Air      b'+1:word:%'
0.706111 O        b'+2:lemma:fructose'
0.705329 O        b'+1:ner:_'
0.701800 O        b'postag:NNS'
0.697356 Gtype    b'-1:lemma:ptac'
0.697356 Gtype    b'-1:word:Ptac'
0.694619 O        b'postag:VBD'
0.691448 Supp     b'-1:word:OmpR'
0.690973 O        b'+1:lemma:\xe2\x88\x86'
0.690973 O        b'+1:word:\xe2\x88\x86'
0.689106 O        b'postag:-LRB-'
0.681590 Med      b'+1:lemma:supplement'
0.681590 Med      b'+1:word:supplemented'
0.679418 O        b'-1:lemma:nitrate'
0.679418 O        b'-1:word:nitrate'
0.678821 Vess     b'-1:postag:VBN'
0.677433 Supp     b'lemma:glutamine'
0.677433 Supp     b'-1:lemma:2g/l'
0.677433 Supp     b'word:glutamine'
0.677433 Supp     b'-1:word:2g/L'
0.677348 Agit     b'-2:postag:RB'
0.675519 Gversion b'-2:lemma:genome'
0.674636 Temp     b'word:sample'
0.674636 Temp     b'-2:lemma:see'
0.673076 Air      b'lemma:%'
0.673076 Air      b'word:%'
0.671204 O        b'+1:word:were'
0.669232 Gtype    b'+2:lemma::'
0.667844 Gtype    b'+1:word:the'
0.667121 Technique b'lemma:ChIP-Seq'
0.664815 Supp     b'-2:lemma:supplement'
0.664741 Technique b'-1:lemma:IP'
0.664741 Technique b'-1:word:IP'
0.663882 Air      b'-1:lemma:_'
0.663882 Air      b'-1:word:_'
0.661472 Technique b'-2:lemma:Fur'
0.658964 Temp     b'lemma:sample'
0.658444 O        b'-1:lemma:l1'
0.658444 O        b'-1:word:L1'
0.656864 Gversion b'lemma:nc'
0.656864 Gversion b'word:NC'
0.656864 Gversion b'+2:lemma:000913'
0.650961 O        b'+1:ner:SUPP'
0.650932 OD       b'lemma:of'
0.650932 OD       b'word:of'
0.645437 Gtype    b'-1:lemma:vector'
0.645437 Gtype    b'-1:word:vector'
0.644034 OD       b'postag:CD'
0.643892 Gversion b'-1:lemma:nc'
0.643892 Gversion b'+1:lemma:000913'
0.643892 Gversion b'-1:word:NC'
0.643892 Gversion b'+1:word:000913'
0.642353 Gtype    b'+1:lemma:the'
0.640398 Gtype    b'+2:postag::'
0.639689 Supp     b'+1:lemma:_'
0.639689 Supp     b'+1:word:_'
0.634037 O        b'lemma:ml'
0.632708 Substrain b'-1:lemma:.'
0.632708 Substrain b'-1:postag:.'
0.632708 Substrain b'-1:word:.'
0.626892 O        b'-1:word:WT'
0.619652 Med      b'+1:lemma:-lrb-'
0.619652 Med      b'+1:word:-LRB-'
0.618943 Gtype    b'lemma:nsrr'
0.618943 Gtype    b'word:NsrR'
0.618943 Gtype    b'+2:lemma:flagtag'
0.617813 O        b'isNumber'
0.617155 O        b'+2:lemma:constant'
0.615900 Gtype    b'lemma:fnr8myc'
0.615900 Gtype    b'word:Fnr8myc'
0.615900 Gtype    b'-2:lemma:chip-fnr'
0.610405 Med      b'+1:postag:-LRB-'
0.609627 O        b'-1:lemma:nacl'
0.609627 O        b'-1:word:NaCl'
0.606869 Gtype    b'-2:lemma:-rcb-'
0.606476 O        b'word:Lrp'
0.605241 Gtype    b'-2:postag:NN'
0.605166 O        b'lemma:,'
0.605166 O        b'postag:,'
0.605166 O        b'word:,'
0.603730 Supp     b'-2:lemma:purr'
0.599492 Temp     b'-2:postag:VB'
0.593363 O        b'-1:lemma:into'


Top negative:
-0.000037 Air      b'-1:lemma:aerobically'
-0.000037 Air      b'-1:word:aerobically'
-0.000046 Air      b'-2:lemma:-rrb-'
-0.000053 O        b'lemma:nacl'
-0.000053 O        b'word:NaCl'
-0.000055 O        b'-1:postag:VBG'
-0.000078 O        b'-1:lemma:rpob'
-0.000078 O        b'-1:word:RpoB'
-0.000084 Supp     b'+2:lemma:dpd'
-0.000087 O        b'-1:lemma:rifampicin'
-0.000087 O        b'-1:word:rifampicin'
-0.000093 pH       b'postag:NN'
-0.000106 O        b'-2:lemma:grow'
-0.000107 O        b'-1:word:an'
-0.000152 Supp     b'-2:lemma:-lrb-'
-0.000157 Supp     b'-2:postag:-LRB-'
-0.000185 Supp     b'+1:lemma:-rrb-'
-0.000185 Supp     b'+1:word:-RRB-'
-0.000208 Supp     b'lemma:%'
-0.000208 Supp     b'word:%'
-0.000239 Supp     b'-2:lemma:with'
-0.000249 O        b'-1:word:for'
-0.000255 O        b'+1:postag:VB'
-0.000265 Air      b'-2:postag:-RRB-'
-0.000339 O        b'+1:lemma:ph'
-0.000339 O        b'+1:word:pH'
-0.000403 O        b'+1:word:the'
-0.000476 Supp     b'+1:ner:SUPP'
-0.000531 O        b'-2:lemma:n2'
-0.000536 O        b'-2:lemma:10'
-0.000545 Anti     b'-1:ner:_'
-0.000566 O        b'-1:lemma:in'
-0.000566 O        b'-1:word:in'
-0.000587 O        b'+2:lemma:5'
-0.000600 Gversion b'+1:ner:_'
-0.000638 Air      b'lemma:70'
-0.000638 Air      b'word:70'
-0.000674 Air      b'+1:lemma:-rrb-'
-0.000674 Air      b'+1:word:-RRB-'
-0.000867 O        b'+2:lemma:0.4'
-0.000911 Air      b'+1:lemma:70'
-0.000911 Air      b'+1:word:70'
-0.000961 Supp     b'+2:ner:SUPP'
-0.000994 O        b'-1:lemma:;'
-0.000994 O        b'-1:word:;'
-0.000994 O        b'-2:lemma:7.6'
-0.001010 O        b'-1:lemma:IP'
-0.001010 O        b'-1:word:IP'
-0.001044 OD       b'+2:postag:CC'
-0.001177 O        b'-1:lemma:~'
-0.001177 O        b'-1:word:~'
-0.001275 Supp     b'lemma:,'
-0.001275 Supp     b'postag:,'
-0.001275 Supp     b'word:,'
-0.001483 O        b'+2:lemma:fnr'
-0.001559 Supp     b'+2:lemma:glucose'
-0.001824 Supp     b'lemma:10'
-0.001824 Supp     b'word:10'
-0.002019 O        b'-1:lemma:fresh'
-0.002019 O        b'-1:word:fresh'
-0.002085 Gtype    b'+1:lemma:-rrb-'
-0.002085 Gtype    b'+1:word:-RRB-'
-0.002161 O        b'-1:lemma:a'
-0.002165 Supp     b'+1:lemma:um'
-0.002165 Supp     b'+1:word:uM'
-0.002190 Supp     b'-2:lemma:;'
-0.002253 Air      b'-2:postag:VBN'
-0.002337 Gtype    b'-1:lemma:-lrb-'
-0.002337 Gtype    b'-1:word:-LRB-'
-0.002351 Supp     b'+2:ner:_'
-0.002365 Supp     b'+2:lemma:-rrb-'
-0.002416 Supp     b'-1:lemma:%'
-0.002416 Supp     b'-1:word:%'
-0.002595 Supp     b'+2:postag:-RRB-'
-0.002865 O        b'+2:lemma:then'
-0.003071 O        b'-1:lemma:dissolve'
-0.003071 O        b'+1:lemma:methanol'
-0.003071 O        b'-1:word:dissolved'
-0.003071 O        b'+1:word:methanol'
-0.003081 Phase    b'+1:postag:NN'
-0.003199 Supp     b'lemma:paraquat'
-0.003199 Supp     b'word:paraquat'
-0.003199 Supp     b'-2:lemma:um'
-0.003281 O        b'-2:lemma:for'
-0.003671 O        b'+2:lemma:total'
-0.003754 Air      b'-2:postag:VBD'
-0.003952 O        b'-1:lemma:iptg'
-0.003952 O        b'-1:word:IPTG'
-0.004161 OD       b'isNumber'
-0.004195 Supp     b'lemma:250'
-0.004195 Supp     b'word:250'
-0.004635 Gtype    b'postag:NNP'
-0.004670 O        b'postag:CD'
-0.005174 O        b'+1:lemma:a'
-0.005205 Air      b'+1:lemma:-lrb-'
-0.005205 Air      b'+1:word:-LRB-'
-0.005295 O        b'+2:postag:DT'
-0.005683 O        b'+1:lemma:300'
-0.005683 O        b'+1:word:300'
-0.005939 Supp     b'-2:lemma:treat'
-0.006203 Air      b'-1:lemma:70'
-0.006203 Air      b'-1:word:70'
-0.006271 OD       b'+1:postag:CD'
-0.006375 OD       b'-1:ner:_'
-0.006737 Med      b'-2:lemma:grow'
-0.007043 Air      b'+2:lemma:,'
-0.007043 Air      b'+2:postag:,'
-0.007080 Med      b'-2:postag:CC'
-0.007417 O        b'lemma:150'
-0.007417 O        b'+1:lemma:mg/ml'
-0.007417 O        b'word:150'
-0.007417 O        b'+1:word:mg/mL'
-0.007417 O        b'-2:lemma:concentration'
-0.007471 Air      b'-2:lemma:be'
-0.007877 Med      b'-1:lemma:m63'
-0.007877 Med      b'-1:word:M63'
-0.008119 O        b'-1:lemma:final'
-0.008119 O        b'-1:word:final'
-0.008630 O        b'-2:postag:IN'
-0.008639 Air      b'lemma:-rrb-'
-0.008639 Air      b'postag:-RRB-'
-0.008639 Air      b'word:-RRB-'
-0.008902 Substrain b'-1:ner:_'
-0.009060 Temp     b'+2:postag:IN'
-0.009242 O        b'-1:word:to'
-0.009771 O        b'+2:lemma:~'
-0.010523 Supp     b'lemma:um'
-0.010523 Supp     b'word:uM'
-0.010523 Supp     b'+2:lemma:paraquat'
-0.010533 Gtype    b'-1:postag::'
-0.010733 O        b'+1:lemma:medium'
-0.010733 O        b'+1:word:medium'
-0.011532 Supp     b'+1:lemma:acetate'
-0.011532 Supp     b'+1:word:acetate'
-0.011754 O        b'+1:lemma:.'
-0.011754 O        b'+1:postag:.'
-0.011754 O        b'+1:word:.'
-0.011912 Anti     b'+1:ner:_'
-0.012188 Supp     b'+1:postag:-RRB-'
-0.012694 Temp     b'symb'
-0.012741 Air      b'+1:postag:-RRB-'
-0.012799 Air      b'+2:lemma:-rrb-'
-0.012808 O        b'+2:postag::'
-0.013087 Supp     b'-1:lemma:250'
-0.013087 Supp     b'-1:word:250'
-0.013616 Air      b'+2:postag:-RRB-'
-0.014242 O        b'+2:postag:CC'
-0.015320 Supp     b'-2:lemma:0.2'
-0.015329 Temp     b'postag:CD'
-0.015896 Supp     b'-2:lemma:mm'
-0.015896 Supp     b'-2:ner:KWSUPP'
-0.017271 Supp     b'-1:lemma:10'
-0.017271 Supp     b'-1:word:10'
-0.017531 Supp     b'-1:postag:NN'
-0.017555 OD       b'+1:lemma:0.4'
-0.017555 OD       b'+1:word:0.4'
-0.017693 OD       b'-2:ner:_'
-0.018134 Gtype    b'-1:postag:CC'
-0.018186 Air      b'+2:lemma:until'
-0.019975 O        b'+1:lemma:~'
-0.019975 O        b'+1:word:~'
-0.020094 O        b'+2:lemma:the'
-0.020521 Air      b'-1:lemma:n2'
-0.020521 Air      b'-1:word:N2'
-0.020932 O        b'-1:lemma:to'
-0.020932 O        b'-1:postag:TO'
-0.021180 Gtype    b'-1:postag:CD'
-0.021721 Gtype    b'-1:lemma::'
-0.021721 Gtype    b'-1:word::'
-0.022090 Air      b'postag:CC'
-0.022673 Air      b'-1:lemma:and'
-0.022673 Air      b'-1:word:and'
-0.022906 O        b'+1:lemma:minimal'
-0.022906 O        b'+1:word:minimal'
-0.023475 Air      b'+2:lemma:70'
-0.023700 O        b'lemma:m9'
-0.023700 O        b'word:M9'
-0.023898 O        b'+1:word:a'
-0.024579 O        b'+1:lemma:sample'
-0.025591 O        b'lemma:pahse'
-0.025591 O        b'word:pahse'
-0.026223 Air      b'-2:lemma:and'
-0.026884 Supp     b'isUpper'
-0.027646 O        b'+1:lemma:1/100'
-0.027646 O        b'+1:word:1/100'
-0.027646 O        b'-2:lemma:sodium'
-0.027646 O        b'+2:lemma:vol'
-0.028123 O        b'-1:postag:DT'
-0.028829 O        b'+2:postag:IN'
-0.028853 Med      b'-1:postag:IN'
-0.029486 O        b'-1:lemma:phosphate'
-0.029486 O        b'-1:word:phosphate'
-0.033461 Med      b'+2:postag:NN'
-0.035774 Phase    b'-2:postag:NN'
-0.036170 O        b'-1:ner:MED'
-0.036660 Temp     b'-1:word:at'
-0.037443 O        b'-1:lemma:mm'
-0.037443 O        b'-1:word:mM'
-0.037461 Supp     b'-1:lemma:.'
-0.037461 Supp     b'-1:postag:.'
-0.037461 Supp     b'-1:word:.'
-0.037590 O        b'+1:lemma:mm'
-0.037590 O        b'+1:word:mM'
-0.037590 O        b'+1:ner:KWSUPP'
-0.037769 Temp     b'-1:lemma:at'
-0.038760 Supp     b'+2:postag:NN'
-0.040566 O        b'lemma:dissolve'
-0.040566 O        b'word:dissolved'
-0.040566 O        b'+2:lemma:methanol'
-0.042161 O        b'+1:lemma:_'
-0.042161 O        b'+1:word:_'
-0.044666 O        b'lemma:1m'
-0.044666 O        b'word:1M'
-0.045112 O        b'lemma:od600'
-0.045112 O        b'word:OD600'
-0.045509 O        b'+1:lemma:fecl2'
-0.045509 O        b'+1:word:FeCl2'
-0.046751 O        b'+1:lemma:+'
-0.046751 O        b'+1:word:+'
-0.047219 O        b'-1:lemma:contain'
-0.047219 O        b'-1:word:containing'
-0.048899 Supp     b'-2:lemma:glucose'
-0.050007 Phase    b'+2:ner:_'
-0.053243 O        b'-1:lemma:until'
-0.053243 O        b'-1:word:until'
-0.055484 OD       b'symb'
-0.056338 O        b'-1:postag:IN'
-0.058113 O        b'+1:lemma:media'
-0.058113 O        b'+1:word:media'
-0.058963 Med      b'-2:ner:MED'
-0.060396 Gtype    b'+1:postag:CC'
-0.060761 Med      b'postag:CD'
-0.063516 O        b'-1:ner:GEN'
-0.064787 O        b'-1:lemma:g/l'
-0.064787 O        b'-1:word:g/L'
-0.065089 O        b'lemma:7.6'
-0.065089 O        b'+1:lemma:;'
-0.065089 O        b'word:7.6'
-0.065089 O        b'+1:word:;'
-0.071226 Temp     b'postag:NN'
-0.072552 O        b'-2:lemma:-lrb-'
-0.072847 O        b'lemma:;'
-0.072847 O        b'-1:lemma:7.6'
-0.072847 O        b'word:;'
-0.072847 O        b'-1:word:7.6'
-0.074028 O        b'lemma:ph'
-0.074028 O        b'word:pH'
-0.074122 Air      b'-2:lemma:n2'
-0.078213 O        b'+2:lemma:sample'
-0.087687 O        b'+1:lemma:-rrb-'
-0.087687 O        b'+1:word:-RRB-'
-0.090664 O        b'-2:lemma:supplement'
-0.091046 Supp     b'-2:ner:_'
-0.092716 Supp     b'+2:lemma:acetate'
-0.092875 Supp     b'lemma:2'
-0.092875 Supp     b'word:2'
-0.093074 O        b'lemma:phase'
-0.093074 O        b'word:phase'
-0.093401 O        b'word:WT'
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-0.096222 O        b'+2:lemma:at'
-0.097002 Air      b'+2:postag:NN'
-0.097506 Supp     b'-2:postag:NN'
-0.100128 O        b'+2:lemma:nitrate'
-0.100273 Supp     b'-1:lemma:-lrb-'
-0.100273 Supp     b'-1:word:-LRB-'
-0.102454 O        b'-1:lemma:-lrb-'
-0.102454 O        b'-1:word:-LRB-'
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