report_Run15_v12.txt 37.8 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.08087945277319189, 'c2': 0.014461959220439795}
best CV score:0.833488403887471
model size: 0.15M

Flat F1: 0.8171801691488648
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      1.000     0.800     0.889        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.590     0.557     0.573        88
       Anti      0.929     1.000     0.963        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.913     0.808     0.857        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.864     0.838     0.851       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.857     0.785     0.817       484


Top likely transitions:
Anti   -> Anti    5.975916
Temp   -> Temp    5.855089
Phase  -> Phase   5.852836
Med    -> Med     5.514788
Gversion -> Gversion 4.714822
OD     -> OD      4.540854
Gtype  -> Gtype   4.358447
Supp   -> Supp    4.024363
Technique -> Technique 3.933370
pH     -> pH      3.391305
Air    -> Air     3.370106
O      -> O       2.814634
Agit   -> Agit    2.053313
Substrain -> Gtype   1.402766
Technique -> Air     0.995814
O      -> Technique 0.522101
Gtype  -> Supp    0.324000
Gtype  -> pH      0.250445
O      -> Phase   0.086528
O      -> Gversion -0.000004
Agit   -> O       -0.000015
Phase  -> Air     -0.004153
pH     -> O       -0.029562
Temp   -> O       -0.050311
O      -> Gtype   -0.055117
Air    -> Gtype   -0.058368
Anti   -> O       -0.060442
Agit   -> Air     -0.078174
Supp   -> Air     -0.126317
Phase  -> O       -0.138076
O      -> Anti    -0.141099
OD     -> Air     -0.156501
Gtype  -> Med     -0.196684
Supp   -> Gtype   -0.198085
Gtype  -> Technique -0.209093
Gversion -> O       -0.241062
Air    -> O       -0.264534
Temp   -> Med     -0.270300
OD     -> Supp    -0.332038
Phase  -> OD      -0.371981
O      -> Supp    -0.387137
O      -> Temp    -0.395472
Air    -> Supp    -0.445155
Med    -> O       -0.489232
O      -> Med     -0.719733
Supp   -> Med     -0.793869
Technique -> pH      -0.885012
Technique -> Gtype   -0.887758
O      -> OD      -0.904248
Supp   -> O       -0.927131
OD     -> O       -1.339784
Substrain -> O       -1.397180
Gtype  -> O       -1.745137
Med    -> Supp    -1.922823
O      -> Air     -2.191602


Top unlikely transitions:
Anti   -> Anti    5.975916
Temp   -> Temp    5.855089
Phase  -> Phase   5.852836
Med    -> Med     5.514788
Gversion -> Gversion 4.714822
OD     -> OD      4.540854
Gtype  -> Gtype   4.358447
Supp   -> Supp    4.024363
Technique -> Technique 3.933370
pH     -> pH      3.391305
Air    -> Air     3.370106
O      -> O       2.814634
Agit   -> Agit    2.053313
Substrain -> Gtype   1.402766
Technique -> Air     0.995814
O      -> Technique 0.522101
Gtype  -> Supp    0.324000
Gtype  -> pH      0.250445
O      -> Phase   0.086528
O      -> Gversion -0.000004
Agit   -> O       -0.000015
Phase  -> Air     -0.004153
pH     -> O       -0.029562
Temp   -> O       -0.050311
O      -> Gtype   -0.055117
Air    -> Gtype   -0.058368
Anti   -> O       -0.060442
Agit   -> Air     -0.078174
Supp   -> Air     -0.126317
Phase  -> O       -0.138076
O      -> Anti    -0.141099
OD     -> Air     -0.156501
Gtype  -> Med     -0.196684
Supp   -> Gtype   -0.198085
Gtype  -> Technique -0.209093
Gversion -> O       -0.241062
Air    -> O       -0.264534
Temp   -> Med     -0.270300
OD     -> Supp    -0.332038
Phase  -> OD      -0.371981
O      -> Supp    -0.387137
O      -> Temp    -0.395472
Air    -> Supp    -0.445155
Med    -> O       -0.489232
O      -> Med     -0.719733
Supp   -> Med     -0.793869
Technique -> pH      -0.885012
Technique -> Gtype   -0.887758
O      -> OD      -0.904248
Supp   -> O       -0.927131
OD     -> O       -1.339784
Substrain -> O       -1.397180
Gtype  -> O       -1.745137
Med    -> Supp    -1.922823
O      -> Air     -2.191602


Top positive:
5.865826 Anti     b'-2:lemma:antibody'
4.519695 Phase    b'-2:lemma:phase'
4.514698 Air      b'lemma:anaerobic'
4.340449 O        b'-2:lemma:_'
3.950536 Gtype    b'-2:lemma:genotype/variation'
3.879645 Technique b'word:ChIP-exo'
3.839920 O        b'word:Cra'
3.695195 Air      b'word:Aerobic'
3.635726 O        b'lemma:_'
3.635726 O        b'word:_'
3.525101 Supp     b'-2:lemma:shake'
3.505314 Med      b'word:LB'
3.403171 Gtype    b'lemma:type'
3.403171 Gtype    b'word:type'
3.383026 Technique b'word:ChIPSeq'
3.367523 Technique b'word:ChIP-Seq'
3.254369 O        b'lemma:1'
3.254369 O        b'word:1'
3.231292 Gtype    b'-2:lemma:affyexp'
3.179231 Gtype    b'-2:lemma:genotype'
3.163329 Gtype    b'word:WT'
3.120137 Supp     b'lemma:nh4cl'
3.044663 Supp     b'lemma:pq'
3.044663 Supp     b'word:PQ'
3.036533 Technique b'lemma:rna-seq'
3.030213 O        b'lemma:-'
3.030213 O        b'word:-'
3.010860 Supp     b'lemma:no3'
3.010860 Supp     b'word:NO3'
2.971054 O        b'lemma:2'
2.971054 O        b'word:2'
2.918239 O        b'postag:VBG'
2.904074 Air      b'postag:RB'
2.890172 Technique b'lemma:chipseq'
2.877212 Gtype    b'lemma:wt'
2.873483 O        b'+2:lemma:\xc2\xb0c'
2.788077 O        b'lemma:3'
2.788077 O        b'word:3'
2.781874 Supp     b'-2:lemma:media'
2.773720 O        b'lemma:at'
2.717439 Gtype    b'lemma:\xce\xb4fur'
2.717439 Gtype    b'word:\xce\x94fur'
2.702674 O        b'-1:postag:NNS'
2.658795 Air      b'word:Anaerobic'
2.656348 Strain   b'lemma:k-12'
2.656348 Strain   b'word:K-12'
2.627814 Phase    b'lemma:mid-log'
2.627814 Phase    b'word:mid-log'
2.621582 O        b'-1:lemma:lb'
2.587371 O        b'lemma:.'
2.587371 O        b'postag:.'
2.587371 O        b'word:.'
2.539821 O        b'+2:lemma:crp'
2.526589 Supp     b'-1:ner:SUPP'
2.524032 Med      b'lemma:MOPS'
2.524032 Med      b'word:MOPS'
2.505815 Gtype    b'+1:lemma:type'
2.505815 Gtype    b'+1:word:type'
2.458502 Substrain b'-2:lemma:substr'
2.447615 O        b'+1:postag:RB'
2.447141 Gtype    b'-1:ner:GEN'
2.423306 Technique b'+2:lemma:ph5'
2.358266 Med      b'+2:postag:CC'
2.357406 Supp     b'lemma:Iron'
2.357406 Supp     b'word:Iron'
2.357406 Supp     b'+1:word:Deficient'
2.357406 Supp     b'-2:lemma:Anaerobic'
2.336422 O        b'word:A'
2.317453 O        b'-2:lemma:fructose'
2.290875 Gtype    b'lemma:\xce\xb4cra'
2.283594 Air      b'-1:lemma:ChIP-Seq'
2.283594 Air      b'-1:word:ChIP-Seq'
2.279986 Gtype    b'word:\xce\x94cra'
2.255576 O        b'lemma:rpob'
2.255576 O        b'word:RpoB'
2.250060 Supp     b'lemma:2h'
2.250060 Supp     b'-1:lemma:additional'
2.250060 Supp     b'word:2h'
2.250060 Supp     b'-1:word:additional'
2.249052 Supp     b'+2:lemma:iptg'
2.238583 O        b'lemma:with'
2.238583 O        b'word:with'
2.213166 Technique b'lemma:ChIP-exo'
2.186516 O        b'-2:lemma:myc'
2.180830 O        b'lemma:b'
2.180830 O        b'word:B'
2.178197 Supp     b'+1:lemma:\xc2\xb5m'
2.178197 Supp     b'+1:word:\xc2\xb5M'
2.122623 O        b'-1:lemma:tag'
2.096079 O        b'-2:lemma:='
2.095370 O        b'-2:lemma:flagtag'
2.084868 Air      b'-2:lemma:IP'
2.037026 Air      b'lemma:aerobic'
2.035821 Med      b'lemma:LB'
2.020895 Supp     b'+2:lemma:rifampicin'
2.015968 Supp     b'lemma:arginine'
1.987148 Phase    b'+2:lemma:o.d.'
1.947236 Supp     b'lemma:iptg'
1.947236 Supp     b'word:IPTG'
1.931404 Substrain b'lemma:mg1655'
1.931404 Substrain b'word:MG1655'
1.928477 Temp     b'-1:word:sample'
1.906176 O        b'word:OmpR'
1.897468 Air      b'postag:JJ'
1.894390 Med      b'+2:lemma:b2'
1.888352 Temp     b'-1:lemma:sample'
1.886649 Supp     b'-1:lemma:Cra'
1.878242 O        b'-1:word:tag'
1.871084 O        b'lemma:culture'
1.865527 Temp     b'+1:lemma:\xc2\xb0c'
1.865527 Temp     b'+1:word:\xc2\xb0C'
1.841805 Supp     b'lemma:nacl'
1.841805 Supp     b'word:NaCl'
1.837572 O        b'-1:word:Aerobic'
1.831045 Gtype    b'lemma:\xce\xb4ompr'
1.831045 Gtype    b'word:\xce\x94ompR'
1.820574 O        b'+1:word:ChIP-Seq'
1.816115 Gversion b'lemma:chip-seq'
1.810843 O        b'-2:lemma:overnight'
1.791213 O        b'lemma:ompr'
1.786247 O        b'word:Lrp'
1.750041 Gtype    b'postag:JJ'
1.746515 Air      b'-2:lemma:nh4cl'
1.731010 Supp     b'-2:lemma:argr'
1.728896 Air      b'-1:lemma:-'
1.728896 Air      b'-1:word:-'
1.728240 Supp     b'-2:lemma:induce'
1.726793 O        b'-1:lemma:ChIP-exo'
1.722284 Supp     b'lemma:acetate'
1.722284 Supp     b'word:acetate'
1.709995 pH       b'lemma:ph5'
1.709995 pH       b'+1:lemma:.5'
1.709995 pH       b'word:pH5'
1.709995 pH       b'+1:word:.5'
1.708459 Med      b'-2:postag:JJ'
1.703573 O        b'lemma::'
1.703573 O        b'word::'
1.701721 Gversion b'word:ChIP-Seq'
1.694807 O        b'postag::'
1.687280 O        b'-2:lemma:medium'
1.686000 Gtype    b'lemma:wild-type'
1.679710 Supp     b'-2:postag:VBG'
1.666053 Gtype    b'lemma:pk4854'
1.666053 Gtype    b'word:PK4854'
1.653500 O        b'lemma:purr'
1.653500 O        b'word:PurR'
1.653355 Supp     b'lemma:fructose'
1.653355 Supp     b'word:fructose'
1.647845 Technique b'-2:lemma:wt'
1.646795 O        b'+1:ner:MED'
1.643492 Supp     b'-1:word:Cra'
1.632680 Supp     b'+2:lemma:feso4'
1.632140 pH       b'+1:postag:CD'
1.620925 Air      b'lemma:aerobically'
1.620925 Air      b'word:aerobically'
1.617358 Phase    b'lemma:stationary'
1.617358 Phase    b'word:stationary'
1.617358 Phase    b'lemma:exponential'
1.617358 Phase    b'word:exponential'
1.609795 Supp     b'-1:lemma:+'
1.609795 Supp     b'-1:word:+'
1.608517 Supp     b'lemma:Adenine'
1.608517 Supp     b'word:Adenine'
1.604892 O        b'-1:lemma:0.3'
1.604892 O        b'-1:word:0.3'
1.601920 Gtype    b'+1:postag::'
1.583453 O        b'-1:word:Anaerobic'
1.581520 O        b'lemma:Cra'
1.578854 Air      b'-2:lemma:fnr'
1.577016 Air      b'-1:lemma:co2'
1.577016 Air      b'-1:word:CO2'
1.576228 O        b'lemma:chip'
1.576013 Supp     b'+1:word:was'
1.572170 Vess     b'-1:postag:VBN'
1.570149 Temp     b'lemma:\xc2\xb0c'
1.570149 Temp     b'word:\xc2\xb0C'
1.570049 Gtype    b'lemma:\xce\xb4oxyr'
1.570049 Gtype    b'word:\xce\x94oxyR'
1.565500 O        b'lemma:rep2'
1.565500 O        b'word:rep2'
1.565500 O        b'lemma:rep1'
1.565500 O        b'word:rep1'
1.550976 Technique b'lemma:rnaseq'
1.550976 Technique b'word:RNASeq'
1.536906 Med      b'+2:lemma:b1'
1.517740 O        b'lemma:soxr'
1.517740 O        b'word:SoxR'
1.517740 O        b'lemma:soxs'
1.517740 O        b'word:SoxS'
1.517672 Gtype    b'-1:lemma:\xe2\x88\x86'
1.517672 Gtype    b'-1:word:\xe2\x88\x86'
1.517615 O        b'+1:postag:NNP'
1.510276 O        b'-1:lemma:type'
1.510276 O        b'-1:word:type'
1.499706 Supp     b'-2:lemma:agent'
1.483969 Supp     b'-1:lemma:with'
1.483969 Supp     b'-1:word:with'
1.483569 Gtype    b'-1:postag:VBG'
1.478239 Supp     b'-2:lemma:for'
1.475742 Gtype    b'lemma:dfnr'
1.475742 Gtype    b'word:dFNR'
1.469503 Temp     b'-1:lemma:37'
1.469503 Temp     b'-1:word:37'
1.469042 O        b'postag:IN'
1.464744 O        b'lemma:harbor'
1.464744 O        b'word:harboring'
1.453259 Gtype    b'lemma:\xe2\x88\x86'
1.453259 Gtype    b'word:\xe2\x88\x86'
1.452390 Phase    b'-2:lemma:until'
1.447920 Technique b'word:RNA-Seq'
1.446491 Supp     b'-2:lemma:20'
1.444578 O        b'+1:word:WT'
1.437081 O        b'+1:lemma:rifampicin'
1.437081 O        b'+1:word:rifampicin'
1.434124 Gtype    b'-2:lemma:delta'
1.430066 Supp     b'+1:lemma:1'
1.430066 Supp     b'+1:word:1'
1.427500 O        b'-2:ner:MED'
1.424970 Agit     b'lemma:rpm'
1.424970 Agit     b'word:rpm'
1.420124 Air      b'-2:lemma:cm20'
1.418951 O        b'+1:lemma:wt'
1.393773 O        b'-1:lemma:glucose'
1.393773 O        b'-1:word:glucose'
1.377774 OD       b'+2:lemma:0.3'
1.370116 Air      b'word:anaerobic'
1.364279 Vess     b'lemma:flask'
1.364279 Vess     b'-1:lemma:warm'
1.364279 Vess     b'word:flask'
1.364279 Vess     b'-1:word:warmed'
1.364279 Vess     b'-2:lemma:pre'
1.364279 Vess     b'+2:lemma:43'
1.362407 OD       b'lemma:0.3'
1.362407 OD       b'word:0.3'
1.359275 O        b'lemma:trpr'
1.359275 O        b'word:TrpR'
1.353666 O        b'lemma:CEL'
1.353666 O        b'word:CEL'
1.347576 O        b'+1:lemma:fnr-8myc'
1.347576 O        b'+1:word:Fnr-8myc'
1.347295 Gtype    b'-1:postag:VBP'
1.345966 O        b'postag:VBN'
1.345426 Strain   b'+1:lemma:substr'
1.345426 Strain   b'+1:word:substr'
1.345426 Strain   b'-2:lemma:str'
1.341414 O        b'word:GadX'
1.336523 Med      b'+1:lemma:0.4'
1.336523 Med      b'+1:word:0.4'
1.320040 Temp     b'-2:lemma:\xcf\x8332'
1.319255 Med      b'lemma:media'
1.319255 Med      b'word:media'
1.314990 Gtype    b'lemma:\xce\xb4soxs'
1.314990 Gtype    b'word:\xce\x94soxS'
1.312248 O        b'lemma:for'
1.309235 Technique b'lemma:ChIP-Seq'
1.306677 O        b'lemma:gadx'
1.305723 Air      b'+2:postag:CD'
1.297862 Technique b'-2:lemma:Fur'
1.295330 O        b'+1:word:were'
1.292558 Temp     b'-1:lemma:\xcf\x8332'
1.292558 Temp     b'-1:word:\xcf\x8332'
1.292468 Temp     b'lemma:43'
1.292468 Temp     b'word:43'
1.287046 Gversion b'lemma:asm584v2'
1.287046 Gversion b'word:ASM584v2'
1.284401 Technique b'-1:lemma:chip-exo'
1.282389 O        b'-1:lemma:\xc2\xb0c'
1.282389 O        b'-1:word:\xc2\xb0C'
1.281812 Gtype    b'-1:lemma:nsrr'
1.281812 Gtype    b'+1:lemma:flagtag'
1.281812 Gtype    b'-1:word:NsrR'
1.281812 Gtype    b'+1:word:Flagtag'
1.275631 O        b'word:C'
1.271687 Agit     b'-1:lemma:250'
1.271687 Agit     b'-1:word:250'
1.253348 O        b'+1:lemma:coli'
1.253348 O        b'+1:word:coli'
1.237906 O        b'-1:word:ChIP-exo'
1.235906 Gtype    b'+2:lemma:glucose'
1.235023 O        b'isLower'
1.232897 Substrain b'+1:lemma:phtpg'
1.232897 Substrain b'+1:word:PhtpG'
1.227818 Gversion b'-2:postag:VB'
1.219799 Air      b'lemma:anaeroibc'
1.219799 Air      b'word:Anaeroibc'
1.219707 Gversion b'lemma:.2'
1.219707 Gversion b'-1:lemma:u00096'
1.219707 Gversion b'word:.2'
1.219707 Gversion b'-1:word:U00096'
1.216500 O        b'+1:lemma:od600'
1.216500 O        b'+1:word:OD600'
1.213125 Air      b'-2:lemma:0.3'
1.207404 O        b'+2:lemma:allow'
1.206428 Gtype    b'lemma:\xce\xb4soxr'
1.206428 Gtype    b'word:\xce\x94soxR'
1.194442 Agit     b'+2:lemma:at'
1.194147 O        b'lemma:oxyr'
1.194147 O        b'word:OxyR'
1.191906 Vess     b'-2:postag:JJ'
1.189510 Supp     b'+1:lemma:2'
1.189510 Supp     b'+1:word:2'
1.184838 O        b'+2:lemma:constant'
1.181071 Anti     b'+1:lemma:antibody'
1.181071 Anti     b'+1:word:antibody'
1.180696 O        b'lemma:argr'
1.180696 O        b'word:ArgR'
1.178131 Gtype    b'-1:lemma:rpob'
1.178131 Gtype    b'-1:word:RpoB'
1.172573 Gtype    b'+1:lemma:with'
1.172573 Gtype    b'+1:word:with'
1.165378 Med      b'lemma:m63'
1.165378 Med      b'word:M63'
1.150059 O        b'+2:postag:VB'
1.149466 Gversion b'-2:lemma:genome'
1.144695 O        b'+1:lemma:\xe2\x88\x86'
1.144695 O        b'+1:word:\xe2\x88\x86'
1.142140 O        b'+1:lemma:pq'
1.142140 O        b'+1:word:PQ'
1.140427 Temp     b'-1:lemma:43'
1.140427 Temp     b'-1:word:43'
1.137924 Supp     b'lemma:glucose'
1.137924 Supp     b'word:glucose'
1.134698 O        b'lemma:a'
1.132538 O        b'postag:DT'
1.131912 Air      b'-2:lemma:%'
1.127562 O        b'+1:lemma:mid-log'
1.127562 O        b'+1:word:mid-log'
1.124244 Supp     b'-1:lemma:vol'
1.124244 Supp     b'-1:word:vol'
1.124244 Supp     b'-2:lemma:1/100'
1.124244 Supp     b'+2:lemma:1m'
1.123863 Med      b'-1:lemma:minimal'
1.123863 Med      b'-1:word:minimal'
1.121900 Supp     b'lemma:Leu'
1.121900 Supp     b'word:Leu'
1.121900 Supp     b'-2:lemma:Lrp'
1.119202 Supp     b'+1:lemma:Deficient'
1.115154 Supp     b'postag:NNP'
1.109064 Med      b'isUpper'
1.108496 Gtype    b'lemma:arca8myc'
1.108496 Gtype    b'word:ArcA8myc'
1.108496 Gtype    b'-2:lemma:chip-arca'
1.108276 Supp     b'-1:word:OmpR'
1.107246 Agit     b'+1:lemma:rpm'
1.107246 Agit     b'+1:word:rpm'
1.105482 Air      b'+2:lemma:%'
1.104945 O        b'-1:word:WT'
1.103023 Substrain b'lemma:mg1655star'
1.103023 Substrain b'word:MG1655star'
1.094825 Temp     b'lemma:37'
1.094825 Temp     b'word:37'
1.090868 Gversion b'lemma:u00096'
1.090868 Gversion b'+1:lemma:.2'
1.090868 Gversion b'word:U00096'
1.090868 Gversion b'+1:word:.2'
1.090255 O        b'-1:lemma:into'
1.090255 O        b'-1:word:into'
1.089496 O        b'+1:lemma:250'
1.089496 O        b'+1:word:250'
1.086468 Supp     b'+2:lemma:A'
1.080485 O        b'-1:lemma:wt'
1.079472 O        b'-1:ner:_'
1.075656 O        b'word:for'
1.074451 Air      b'-2:lemma:mid-log'
1.072825 Air      b'-2:postag:CD'
1.069264 pH       b'lemma:5.5'
1.069264 pH       b'word:5.5'
1.068683 Air      b'-1:lemma:phase'
1.068683 Air      b'-1:word:phase'
1.067995 Air      b'+1:lemma:%'
1.067995 Air      b'+1:word:%'
1.063975 Gtype    b'-2:postag:JJ'
1.053123 O        b'word:cultures'
1.051784 O        b'+2:ner:_'
1.050143 Gversion b'-2:lemma:build'
1.047841 Agit     b'lemma:250'
1.047841 Agit     b'word:250'
1.043748 Anti     b'-2:lemma:polymerase'
1.039292 Med      b'+2:lemma:+'
1.028164 O        b'-1:lemma:mg1655'
1.028164 O        b'-1:word:MG1655'
1.028007 Supp     b'lemma:dpd'
1.028007 Supp     b'word:DPD'
1.027958 Phase    b'-1:lemma:mid-log'
1.027958 Phase    b'-1:word:mid-log'
1.020410 Supp     b'-1:postag:CD'
1.016994 Med      b'-2:lemma:minimal'
1.012755 Med      b'+2:lemma:then'
1.011408 O        b'+1:postag:VBN'
1.010707 Gtype    b'+1:lemma:ph5'
1.010707 Gtype    b'+1:word:pH5'
1.010707 Gtype    b'+2:lemma:.5'
1.010470 O        b'+2:lemma:_'
1.004270 Supp     b'lemma:glutamine'
1.004270 Supp     b'-1:lemma:2g/l'
1.004270 Supp     b'word:glutamine'
1.004270 Supp     b'-1:word:2g/L'
0.995624 Med      b'lemma:medium'
0.995624 Med      b'word:medium'
0.986159 O        b'lemma:affyexp'
0.986159 O        b'word:affyexp'
0.983615 O        b'+2:postag:JJ'
0.974793 Gversion b'lemma:000913'
0.974793 Gversion b'word:000913'
0.974793 Gversion b'-2:lemma:nc'
0.967431 OD       b'+1:lemma:of'
0.967431 OD       b'+1:word:of'
0.966957 Gtype    b'-2:postag:NNS'
0.965996 Med      b'lemma:minimal'
0.965996 Med      b'word:minimal'
0.965397 OD       b'postag:CD'
0.957564 O        b'lemma:chip-fnr'
0.957564 O        b'word:chip-Fnr'
0.957564 O        b'+2:lemma:fnr8myc'
0.954383 Supp     b'+2:lemma:-lrb-'
0.952030 Air      b'-1:postag::'
0.950418 O        b'-1:lemma:pq'
0.950418 O        b'-1:word:PQ'
0.946326 O        b'lemma:\xcf\x8332'
0.946326 O        b'word:\xcf\x8332'
0.940020 OD       b'-1:lemma:od450'
0.940020 OD       b'-1:word:OD450'
0.930156 O        b'lemma:input'
0.930156 O        b'+1:lemma:chip-seq'
0.930156 O        b'word:Input'
0.928078 O        b'-2:lemma:250'
0.927585 OD       b'-2:lemma:of'
0.925815 O        b'+1:lemma:0.2'
0.925815 O        b'+1:word:0.2'
0.919393 Supp     b'+2:lemma:nh4cl'
0.918987 Anti     b'+2:postag:NNP'
0.918710 Technique b'-1:lemma:IP'
0.918710 Technique b'-1:word:IP'
0.918515 Supp     b'-2:lemma:purr'
0.917145 Supp     b'+2:postag:-LRB-'
0.916267 Supp     b'lemma:Fe'
0.916267 Supp     b'word:Fe'
0.914118 Supp     b'-1:lemma:_'
0.914118 Supp     b'-1:word:_'
0.910799 Gtype    b'lemma:deltaseqa'
0.910799 Gtype    b'-1:lemma:old'
0.910799 Gtype    b'word:deltaSeqA'
0.910799 Gtype    b'-1:word:old'
0.910799 Gtype    b'-2:lemma:seqa'
0.902621 O        b'+1:ner:_'
0.900268 O        b'+2:lemma:buffer'
0.899361 O        b'lemma:from'
0.899361 O        b'word:from'
0.899031 O        b'-2:lemma:reach'
0.896488 Gversion b'lemma:nc'
0.896488 Gversion b'word:NC'
0.896488 Gversion b'+2:lemma:000913'
0.889543 Phase    b'-1:lemma:until'
0.889543 Phase    b'-1:word:until'
0.884309 O        b'-1:postag:NNP'
0.883096 O        b'-2:lemma:ChIP-Seq'
0.881528 Supp     b'-1:postag:CC'
0.879054 Gtype    b'-1:lemma:factor'
0.879054 Gtype    b'-1:word:factor'
0.879054 Gtype    b'-2:lemma:transcription'
0.878238 Supp     b'+1:lemma:_'
0.878238 Supp     b'+1:word:_'
0.877084 Air      b'+2:lemma:37'
0.872086 Supp     b'-2:lemma:10'
0.871813 O        b'-1:lemma:media'
0.871813 O        b'-1:word:media'
0.871092 O        b'-1:lemma:anaerobic'
0.869449 O        b'-2:ner:_'
0.866352 pH       b'lemma:.5'
0.866352 pH       b'-1:lemma:ph5'
0.866352 pH       b'word:.5'
0.866352 pH       b'-1:word:pH5'
0.862190 Supp     b'lemma:rifampicin'
0.862190 Supp     b'word:rifampicin'
0.860345 O        b'-2:lemma:min'
0.859787 Gtype    b'postag:-RRB-'
0.859205 O        b'+2:lemma:chipseq'
0.856687 O        b'+2:lemma:='
0.854809 Med      b'postag:NNP'
0.847395 O        b'lemma:~'
0.847395 O        b'word:~'
0.845998 Substrain b'-1:lemma:.'
0.845998 Substrain b'-1:postag:.'
0.845998 Substrain b'-1:word:.'
0.845747 OD       b'lemma:od450'
0.845747 OD       b'word:OD450'
0.845747 OD       b'-1:word:At'
0.844838 O        b'-1:lemma:l1'
0.844838 O        b'-1:word:L1'
0.843584 Med      b'+1:lemma:minimal'
0.843584 Med      b'+1:word:minimal'
0.840383 Technique b'-1:lemma:input'
0.840383 Technique b'-1:word:Input'
0.836614 Vess     b'+1:lemma:at'
0.836614 Vess     b'+1:word:at'
0.832815 Gtype    b'+1:word:the'
0.829370 O        b'-1:ner:TF'
0.828524 Gversion b'-1:lemma:nc'
0.828524 Gversion b'+1:lemma:000913'
0.828524 Gversion b'-1:word:NC'


Top negative:
-0.027347 O        b'word:fructose'
-0.027381 Supp     b'+1:lemma:acetate'
-0.027381 Supp     b'+1:word:acetate'
-0.028155 O        b'+2:postag:CC'
-0.029013 O        b'lemma:\xce\xb4soxs'
-0.029013 O        b'word:\xce\x94soxS'
-0.029719 O        b'+1:lemma:pahse'
-0.029719 O        b'+1:word:pahse'
-0.029852 O        b'+1:lemma:dissolve'
-0.029852 O        b'+1:word:dissolved'
-0.029950 O        b'-1:postag:-RRB-'
-0.029954 O        b'-1:lemma:sodium'
-0.029954 O        b'-1:word:Sodium'
-0.029954 O        b'+2:lemma:1/100'
-0.033631 Supp     b'-1:lemma:10'
-0.033631 Supp     b'-1:word:10'
-0.033846 O        b'+1:lemma:nitrate'
-0.033846 O        b'+1:word:nitrate'
-0.034109 O        b'-1:lemma:with'
-0.034109 O        b'-1:word:with'
-0.034218 Supp     b'-2:lemma:treat'
-0.035170 O        b'-2:lemma:10'
-0.035383 O        b'+1:lemma:~'
-0.035383 O        b'+1:word:~'
-0.039713 O        b'-1:lemma:70'
-0.039713 O        b'-1:word:70'
-0.039944 O        b'-1:lemma:0.2'
-0.039944 O        b'-1:word:0.2'
-0.040059 Med      b'-1:postag:IN'
-0.040322 O        b'-2:lemma:0.1'
-0.042554 O        b'-1:lemma:rifampicin'
-0.042554 O        b'-1:word:rifampicin'
-0.043321 Supp     b'lemma:10'
-0.043321 Supp     b'word:10'
-0.045170 O        b'-2:lemma:\xc2\xb0c'
-0.045607 O        b'+2:lemma:media'
-0.047495 Med      b'-2:lemma:grow'
-0.047534 O        b'-1:lemma:final'
-0.047534 O        b'-1:word:final'
-0.048020 O        b'+1:lemma:.'
-0.048020 O        b'+1:postag:.'
-0.048020 O        b'+1:word:.'
-0.048170 O        b'-2:lemma:-rrb-'
-0.048686 OD       b'+2:postag:NN'
-0.049053 O        b'+1:lemma:n2'
-0.049053 O        b'+1:word:N2'
-0.050974 O        b'-2:lemma:70'
-0.051431 O        b'+1:lemma:phase'
-0.051431 O        b'+1:word:phase'
-0.054753 O        b'+2:lemma:ph'
-0.054817 O        b'+1:lemma:media'
-0.054817 O        b'+1:word:media'
-0.055131 Supp     b'lemma:um'
-0.055131 Supp     b'word:uM'
-0.055131 Supp     b'+2:lemma:paraquat'
-0.055447 O        b'-1:postag:CD'
-0.055501 O        b'-1:postag:VBG'
-0.055589 O        b'-1:lemma:IP'
-0.055589 O        b'-1:word:IP'
-0.056094 Vess     b'+2:ner:_'
-0.057153 Air      b'isLower'
-0.057279 Supp     b'+2:lemma:glucose'
-0.058036 O        b'-2:lemma:grow'
-0.058610 Supp     b'-1:lemma:.'
-0.058610 Supp     b'-1:postag:.'
-0.058610 Supp     b'-1:word:.'
-0.060585 O        b'-1:lemma:ml'
-0.061092 O        b'+1:lemma:of'
-0.061092 O        b'+1:word:of'
-0.062019 O        b'+1:lemma:sample'
-0.062186 Supp     b'lemma:paraquat'
-0.062186 Supp     b'word:paraquat'
-0.062186 Supp     b'-2:lemma:um'
-0.062582 Med      b'lemma:-lrb-'
-0.062582 Med      b'word:-LRB-'
-0.062813 O        b'lemma:;'
-0.062813 O        b'-1:lemma:7.6'
-0.062813 O        b'word:;'
-0.062813 O        b'-1:word:7.6'
-0.063524 O        b'+1:lemma:min'
-0.063524 O        b'+1:word:min'
-0.064373 O        b'-1:word:ml'
-0.065333 O        b'-2:lemma:25'
-0.065436 Anti     b'-1:ner:_'
-0.066055 O        b'-2:postag:IN'
-0.066797 pH       b'-2:ner:_'
-0.067572 O        b'+1:lemma:minimal'
-0.067572 O        b'+1:word:minimal'
-0.068647 O        b'-2:lemma:for'
-0.069259 O        b'-1:lemma:o2'
-0.069259 O        b'-1:word:O2'
-0.070970 Supp     b'lemma:.'
-0.070970 Supp     b'postag:.'
-0.070970 Supp     b'word:.'
-0.071106 Air      b'postag:CD'
-0.071218 Air      b'-2:postag:CC'
-0.072110 Med      b'postag:-LRB-'
-0.072870 O        b'lemma:mg/ml'
-0.072870 O        b'-1:lemma:150'
-0.072870 O        b'word:mg/mL'
-0.072870 O        b'-1:word:150'
-0.073883 Supp     b'-1:postag:VBN'
-0.074729 O        b'-2:lemma:n2'
-0.076729 O        b'+1:lemma:1/100'
-0.076729 O        b'+1:word:1/100'
-0.076729 O        b'-2:lemma:sodium'
-0.076729 O        b'+2:lemma:vol'
-0.079178 Gtype    b'postag::'
-0.079920 O        b'lemma:\xce\xb4oxyr'
-0.079920 O        b'word:\xce\x94oxyR'
-0.080477 O        b'+2:lemma:agitation'
-0.080683 O        b'+1:lemma:genome'
-0.080683 O        b'+1:word:genome'
-0.082076 Supp     b'-2:lemma:0.2'
-0.082260 Supp     b'postag:IN'
-0.082462 Phase    b'+2:ner:_'
-0.083826 O        b'-2:lemma:%'
-0.084681 Supp     b'+2:lemma:dpd'
-0.087405 O        b'+1:lemma:fecl2'
-0.087405 O        b'+1:word:FeCl2'
-0.087793 Strain   b'-1:ner:_'
-0.087862 O        b'lemma:ph'
-0.087862 O        b'word:pH'
-0.088057 O        b'+1:lemma:mm'
-0.088057 O        b'+1:word:mM'
-0.088057 O        b'+1:ner:KWSUPP'
-0.088935 Supp     b'-1:lemma:dpd'
-0.088935 Supp     b'-1:word:DPD'
-0.089507 O        b'-1:ner:MED'
-0.090645 Supp     b'-1:lemma:250'
-0.090645 Supp     b'-1:word:250'
-0.090970 Med      b'postag:CD'
-0.091105 O        b'word:LB'
-0.091723 O        b'lemma:0.2'
-0.091723 O        b'word:0.2'
-0.092504 Med      b'+1:ner:MED'
-0.093337 OD       b'-2:lemma:a'
-0.094205 OD       b'-2:postag:DT'
-0.094216 Med      b'+2:ner:MED'
-0.095043 O        b'+2:postag:IN'
-0.096376 O        b'+1:lemma:5'
-0.096376 O        b'+1:word:5'
-0.097487 O        b'+2:lemma:then'
-0.097621 Supp     b'-2:lemma:.'
-0.097621 Supp     b'-2:postag:.'
-0.097777 Supp     b'+1:lemma:dpd'
-0.097777 Supp     b'+1:word:DPD'
-0.098503 OD       b'isLower'
-0.099924 O        b'+2:ner:SUPP'
-0.100023 Gtype    b'-1:lemma:,'
-0.100023 Gtype    b'-1:postag:,'
-0.100023 Gtype    b'-1:word:,'
-0.100601 Gtype    b'+1:ner:_'
-0.101585 O        b'lemma:o2'
-0.101585 O        b'word:O2'
-0.102460 O        b'lemma:m63'
-0.102460 O        b'word:M63'
-0.103690 O        b'+2:lemma:fnr'
-0.103951 Technique b'-1:postag::'
-0.105787 O        b'-1:lemma:g/l'
-0.105787 O        b'-1:word:g/L'
-0.106426 O        b'lemma:methanol'
-0.106426 O        b'word:methanol'
-0.106426 O        b'-2:lemma:dissolve'
-0.108310 O        b'-1:lemma:n2'
-0.108310 O        b'-1:word:N2'
-0.108597 O        b'lemma:7.6'
-0.108597 O        b'+1:lemma:;'
-0.108597 O        b'word:7.6'
-0.108597 O        b'+1:word:;'
-0.108884 Gtype    b'+2:ner:GEN'
-0.108956 OD       b'isUpper'
-0.108969 O        b'lemma:dissolve'
-0.108969 O        b'word:dissolved'
-0.108969 O        b'+2:lemma:methanol'
-0.109431 O        b'-2:postag:DT'
-0.110760 O        b'lemma:0.1'
-0.110760 O        b'word:0.1'
-0.113201 O        b'-1:lemma:mm'
-0.113201 O        b'-1:word:mM'
-0.113324 O        b'+2:lemma:nitrate'
-0.114188 Phase    b'+2:postag:CD'
-0.114201 O        b'-2:lemma:cell'
-0.114417 O        b'-2:postag:RB'
-0.118567 O        b'-1:lemma:-lrb-'
-0.118567 O        b'-1:word:-LRB-'
-0.118890 Air      b'isUpper'
-0.120641 O        b'-2:lemma:to'
-0.120641 O        b'-2:postag:TO'
-0.123349 Strain   b'+2:ner:_'
-0.124950 Supp     b'postag:CC'
-0.125979 Supp     b'+1:postag:VBN'
-0.127509 Gtype    b'+1:postag:CC'
-0.127958 Air      b'+2:postag:IN'
-0.128188 Gtype    b'-1:postag:CD'
-0.129091 O        b'+1:postag:DT'
-0.134400 O        b'+2:lemma:~'
-0.135113 O        b'-1:lemma:fresh'
-0.135113 O        b'-1:word:fresh'
-0.138005 Supp     b'postag::'
-0.138174 O        b'lemma:150'
-0.138174 O        b'+1:lemma:mg/ml'
-0.138174 O        b'word:150'
-0.138174 O        b'+1:word:mg/mL'
-0.138174 O        b'-2:lemma:concentration'
-0.138580 O        b'lemma:co2'
-0.138580 O        b'word:CO2'
-0.138724 O        b'lemma:od600'
-0.138724 O        b'word:OD600'
-0.140720 OD       b'+2:lemma:2.0'
-0.141191 Med      b'-2:lemma:in'
-0.141982 O        b'lemma:nacl'
-0.141982 O        b'word:NaCl'
-0.142717 O        b'+2:lemma:n2'
-0.146954 Gtype    b'+1:lemma:,'
-0.146954 Gtype    b'+1:postag:,'
-0.146954 Gtype    b'+1:word:,'
-0.146955 O        b'-2:lemma:-lrb-'
-0.147840 Supp     b'+2:lemma:acetate'
-0.148283 O        b'-2:lemma:stir'
-0.148667 Supp     b'+2:postag::'
-0.149810 O        b'-1:ner:GEN'
-0.152452 O        b'lemma:1m'
-0.152452 O        b'word:1M'
-0.152835 Supp     b'-2:lemma:-lrb-'
-0.157684 Supp     b'isNumber'
-0.159139 Air      b'+2:lemma:70'
-0.161379 O        b'-2:lemma:g/l'
-0.161844 Vess     b'postag:NN'
-0.162536 O        b'lemma:fecl2'
-0.162536 O        b'word:FeCl2'
-0.163188 Air      b'-2:lemma:be'
-0.164026 Supp     b'+1:lemma:nacl'
-0.164026 Supp     b'+1:word:NaCl'
-0.164069 Temp     b'+2:lemma:with'
-0.166873 O        b'-1:lemma:dissolve'
-0.166873 O        b'+1:lemma:methanol'
-0.166873 O        b'-1:word:dissolved'
-0.166873 O        b'+1:word:methanol'
-0.167028 O        b'-1:postag:IN'
-0.168371 O        b'lemma:medium'
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