********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.010768822256624434, 'c2': 0.0777339562711509}
best CV score:0.8200149039218473
model size: 0.19M

Flat F1: 0.8021567886445753
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.804     0.891        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.895     0.386     0.540        88
       Anti      0.692     0.692     0.692        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.925     0.795     0.855        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.877     0.838     0.857       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.907     0.742     0.802       484


Top likely transitions:
Supp   -> Supp    4.601053
Med    -> Med     4.440145
Temp   -> Temp    4.257271
Anti   -> Anti    4.176365
Gtype  -> Gtype   3.753853
OD     -> OD      3.727807
Phase  -> Phase   3.418404
Air    -> Air     3.392807
Gversion -> Gversion 3.016123
Technique -> Technique 2.879123
O      -> O       2.862492
pH     -> pH      2.427277
Agit   -> Agit    1.633894
Technique -> Air     1.145826
Substrain -> Gtype   1.145425
Gtype  -> Supp    0.786579
Gtype  -> pH      0.485275
O      -> Technique 0.190639
Strain -> O       0.170374
Air    -> O       0.110669
O      -> Vess    0.081994
Vess   -> O       0.057819
Gtype  -> Air     0.054572
O      -> Supp    0.042251
Strain -> pH      -0.000004
Agit   -> Temp    -0.000022
Temp   -> pH      -0.000070
pH     -> Anti    -0.000121
pH     -> Technique -0.000232
Supp   -> Substrain -0.002034
Med    -> Phase   -0.003334
Supp   -> Strain  -0.005021
pH     -> Med     -0.008116
Temp   -> Gversion -0.008931
pH     -> Agit    -0.009308
Supp   -> O       -0.009403
Air    -> Strain  -0.013271
Technique -> Phase   -0.013322
O      -> Gtype   -0.016104
O      -> Strain  -0.017005
Agit   -> Med     -0.023004
O      -> Substrain -0.023723
OD     -> Anti    -0.023780
Temp   -> Phase   -0.025753
Substrain -> pH      -0.028678
Phase  -> Air     -0.030834
Vess   -> Supp    -0.031025
Supp   -> Vess    -0.041500
Gversion -> Anti    -0.045830
Med    -> Anti    -0.046221
Gversion -> Agit    -0.048298
Med    -> Agit    -0.050703
Anti   -> Gversion -0.051639
Temp   -> Technique -0.058408
Air    -> pH      -0.058912
Med    -> Gversion -0.061587
Technique -> Anti    -0.064142
Technique -> Temp    -0.064542
OD     -> pH      -0.066687
Temp   -> Anti    -0.067638
Gversion -> Med     -0.068418
Agit   -> OD      -0.069070
O      -> pH      -0.070654
Gtype  -> Vess    -0.071805
OD     -> Gversion -0.072058
Temp   -> O       -0.073055
OD     -> Agit    -0.073961
Agit   -> Technique -0.074650
Anti   -> pH      -0.074689
Strain -> Supp    -0.074800
Technique -> Agit    -0.075800
Air    -> Anti    -0.076742
Phase  -> pH      -0.080562
Agit   -> Gtype   -0.083822
Phase  -> Gversion -0.084004
pH     -> Temp    -0.084861
Gtype  -> Strain  -0.085927
pH     -> OD      -0.088914
Supp   -> Agit    -0.098611
pH     -> Gversion -0.099964
Agit   -> Supp    -0.101536
Gtype  -> Substrain -0.103493
Anti   -> Phase   -0.114445
Gversion -> Temp    -0.117138
pH     -> Air     -0.117215
Med    -> pH      -0.124861
Gversion -> pH      -0.129893
Substrain -> Supp    -0.131045
Gtype  -> Agit    -0.131273
Temp   -> OD      -0.131780
Phase  -> Temp    -0.132911
Anti   -> Air     -0.142300
pH     -> Gtype   -0.143944
Anti   -> Technique -0.144779
Med    -> OD      -0.160442
Technique -> Med     -0.160829
pH     -> O       -0.168645
Supp   -> Phase   -0.174608
Anti   -> O       -0.176040
Phase  -> Anti    -0.186939
Supp   -> Air     -0.187047
Med    -> Temp    -0.191265
Strain -> Gtype   -0.191315
Anti   -> OD      -0.194041
OD     -> Med     -0.197062
O      -> Agit    -0.198499
Supp   -> pH      -0.202478
Gversion -> Technique -0.207244
Phase  -> Gtype   -0.210867
Temp   -> Gtype   -0.215612
Gversion -> OD      -0.215851
Temp   -> Air     -0.216923
Med    -> Technique -0.216978
Technique -> Gversion -0.223559
Temp   -> Supp    -0.227752
OD     -> Technique -0.238458
Supp   -> Anti    -0.248768
Anti   -> Temp    -0.266160
Air    -> Gversion -0.267896
Phase  -> Med     -0.269570
Med    -> Air     -0.273710
Supp   -> Temp    -0.280654
Air    -> Technique -0.281186
pH     -> Supp    -0.284288
Gtype  -> Temp    -0.284318
Air    -> Gtype   -0.286800
O      -> Phase   -0.298413
Air    -> Med     -0.298671
Anti   -> Med     -0.300407
OD     -> Gtype   -0.311342
Supp   -> Technique -0.313305
Med    -> Gtype   -0.314833
Agit   -> Air     -0.328763
Agit   -> O       -0.330618
Gversion -> Gtype   -0.333837
Anti   -> Supp    -0.342844
Technique -> O       -0.350116
Gversion -> Air     -0.364022
Technique -> Supp    -0.364780
Supp   -> Gversion -0.365808
Phase  -> Technique -0.377592
Temp   -> Med     -0.379316
Supp   -> OD      -0.379574
Gtype  -> Phase   -0.380049
OD     -> Temp    -0.382021
Anti   -> Gtype   -0.392720
Air    -> Temp    -0.396794
Gversion -> Supp    -0.422561
Phase  -> Supp    -0.430324
Supp   -> Gtype   -0.458758
O      -> Temp    -0.471141
Med    -> O       -0.493056
Air    -> Phase   -0.505234
Gtype  -> OD      -0.512292
Technique -> OD      -0.514086
Gtype  -> Med     -0.555753
Gtype  -> Technique -0.593659
Air    -> Supp    -0.604862
Air    -> OD      -0.607547
Phase  -> O       -0.620389
OD     -> Supp    -0.621817
O      -> Gversion -0.648461
Gtype  -> Gversion -0.651672
Air    -> Agit    -0.673873
O      -> Anti    -0.704593
Phase  -> OD      -0.759418
Gversion -> O       -0.823522
Supp   -> Med     -0.845148
Gtype  -> Anti    -0.864158
OD     -> O       -0.872680
OD     -> Air     -0.935836
O      -> OD      -0.976088
Technique -> Gtype   -0.980234
Technique -> pH      -1.040747
Substrain -> O       -1.041372
Gtype  -> O       -1.162262
O      -> Med     -1.203165
Med    -> Supp    -1.458943
O      -> Air     -1.684829


Top unlikely transitions:
Supp   -> Supp    4.601053
Med    -> Med     4.440145
Temp   -> Temp    4.257271
Anti   -> Anti    4.176365
Gtype  -> Gtype   3.753853
OD     -> OD      3.727807
Phase  -> Phase   3.418404
Air    -> Air     3.392807
Gversion -> Gversion 3.016123
Technique -> Technique 2.879123
O      -> O       2.862492
pH     -> pH      2.427277
Agit   -> Agit    1.633894
Technique -> Air     1.145826
Substrain -> Gtype   1.145425
Gtype  -> Supp    0.786579
Gtype  -> pH      0.485275
O      -> Technique 0.190639
Strain -> O       0.170374
Air    -> O       0.110669
O      -> Vess    0.081994
Vess   -> O       0.057819
Gtype  -> Air     0.054572
O      -> Supp    0.042251
Strain -> pH      -0.000004
Agit   -> Temp    -0.000022
Temp   -> pH      -0.000070
pH     -> Anti    -0.000121
pH     -> Technique -0.000232
Supp   -> Substrain -0.002034
Med    -> Phase   -0.003334
Supp   -> Strain  -0.005021
pH     -> Med     -0.008116
Temp   -> Gversion -0.008931
pH     -> Agit    -0.009308
Supp   -> O       -0.009403
Air    -> Strain  -0.013271
Technique -> Phase   -0.013322
O      -> Gtype   -0.016104
O      -> Strain  -0.017005
Agit   -> Med     -0.023004
O      -> Substrain -0.023723
OD     -> Anti    -0.023780
Temp   -> Phase   -0.025753
Substrain -> pH      -0.028678
Phase  -> Air     -0.030834
Vess   -> Supp    -0.031025
Supp   -> Vess    -0.041500
Gversion -> Anti    -0.045830
Med    -> Anti    -0.046221
Gversion -> Agit    -0.048298
Med    -> Agit    -0.050703
Anti   -> Gversion -0.051639
Temp   -> Technique -0.058408
Air    -> pH      -0.058912
Med    -> Gversion -0.061587
Technique -> Anti    -0.064142
Technique -> Temp    -0.064542
OD     -> pH      -0.066687
Temp   -> Anti    -0.067638
Gversion -> Med     -0.068418
Agit   -> OD      -0.069070
O      -> pH      -0.070654
Gtype  -> Vess    -0.071805
OD     -> Gversion -0.072058
Temp   -> O       -0.073055
OD     -> Agit    -0.073961
Agit   -> Technique -0.074650
Anti   -> pH      -0.074689
Strain -> Supp    -0.074800
Technique -> Agit    -0.075800
Air    -> Anti    -0.076742
Phase  -> pH      -0.080562
Agit   -> Gtype   -0.083822
Phase  -> Gversion -0.084004
pH     -> Temp    -0.084861
Gtype  -> Strain  -0.085927
pH     -> OD      -0.088914
Supp   -> Agit    -0.098611
pH     -> Gversion -0.099964
Agit   -> Supp    -0.101536
Gtype  -> Substrain -0.103493
Anti   -> Phase   -0.114445
Gversion -> Temp    -0.117138
pH     -> Air     -0.117215
Med    -> pH      -0.124861
Gversion -> pH      -0.129893
Substrain -> Supp    -0.131045
Gtype  -> Agit    -0.131273
Temp   -> OD      -0.131780
Phase  -> Temp    -0.132911
Anti   -> Air     -0.142300
pH     -> Gtype   -0.143944
Anti   -> Technique -0.144779
Med    -> OD      -0.160442
Technique -> Med     -0.160829
pH     -> O       -0.168645
Supp   -> Phase   -0.174608
Anti   -> O       -0.176040
Phase  -> Anti    -0.186939
Supp   -> Air     -0.187047
Med    -> Temp    -0.191265
Strain -> Gtype   -0.191315
Anti   -> OD      -0.194041
OD     -> Med     -0.197062
O      -> Agit    -0.198499
Supp   -> pH      -0.202478
Gversion -> Technique -0.207244
Phase  -> Gtype   -0.210867
Temp   -> Gtype   -0.215612
Gversion -> OD      -0.215851
Temp   -> Air     -0.216923
Med    -> Technique -0.216978
Technique -> Gversion -0.223559
Temp   -> Supp    -0.227752
OD     -> Technique -0.238458
Supp   -> Anti    -0.248768
Anti   -> Temp    -0.266160
Air    -> Gversion -0.267896
Phase  -> Med     -0.269570
Med    -> Air     -0.273710
Supp   -> Temp    -0.280654
Air    -> Technique -0.281186
pH     -> Supp    -0.284288
Gtype  -> Temp    -0.284318
Air    -> Gtype   -0.286800
O      -> Phase   -0.298413
Air    -> Med     -0.298671
Anti   -> Med     -0.300407
OD     -> Gtype   -0.311342
Supp   -> Technique -0.313305
Med    -> Gtype   -0.314833
Agit   -> Air     -0.328763
Agit   -> O       -0.330618
Gversion -> Gtype   -0.333837
Anti   -> Supp    -0.342844
Technique -> O       -0.350116
Gversion -> Air     -0.364022
Technique -> Supp    -0.364780
Supp   -> Gversion -0.365808
Phase  -> Technique -0.377592
Temp   -> Med     -0.379316
Supp   -> OD      -0.379574
Gtype  -> Phase   -0.380049
OD     -> Temp    -0.382021
Anti   -> Gtype   -0.392720
Air    -> Temp    -0.396794
Gversion -> Supp    -0.422561
Phase  -> Supp    -0.430324
Supp   -> Gtype   -0.458758
O      -> Temp    -0.471141
Med    -> O       -0.493056
Air    -> Phase   -0.505234
Gtype  -> OD      -0.512292
Technique -> OD      -0.514086
Gtype  -> Med     -0.555753
Gtype  -> Technique -0.593659
Air    -> Supp    -0.604862
Air    -> OD      -0.607547
Phase  -> O       -0.620389
OD     -> Supp    -0.621817
O      -> Gversion -0.648461
Gtype  -> Gversion -0.651672
Air    -> Agit    -0.673873
O      -> Anti    -0.704593
Phase  -> OD      -0.759418
Gversion -> O       -0.823522
Supp   -> Med     -0.845148
Gtype  -> Anti    -0.864158
OD     -> O       -0.872680
OD     -> Air     -0.935836
O      -> OD      -0.976088
Technique -> Gtype   -0.980234
Technique -> pH      -1.040747
Substrain -> O       -1.041372
Gtype  -> O       -1.162262
O      -> Med     -1.203165
Med    -> Supp    -1.458943
O      -> Air     -1.684829


Top positive:
3.837832 O        b'lemma:_'
3.837832 O        b'word:_'
3.222713 Air      b'lemma:anaerobic'
3.022996 Gtype    b'word:WT'
2.649158 O        b'word:Cra'
2.598712 Technique b'word:ChIP-exo'
2.591294 Supp     b'lemma:Iron'
2.591294 Supp     b'word:Iron'
2.591294 Supp     b'+1:word:Deficient'
2.588651 Technique b'word:ChIPSeq'
2.485749 Air      b'word:Aerobic'
2.392975 Med      b'word:LB'
2.360477 Strain   b'lemma:k-12'
2.360477 Strain   b'word:K-12'
2.355150 Phase    b'lemma:mid-log'
2.355150 Phase    b'word:mid-log'
2.342327 Gtype    b'lemma:wt'
2.317713 Air      b'lemma:aerobically'
2.317713 Air      b'word:aerobically'
2.287522 Air      b'word:Anaerobic'
2.276335 Technique b'lemma:chipseq'
2.271004 Supp     b'lemma:2h'
2.271004 Supp     b'-1:lemma:additional'
2.271004 Supp     b'word:2h'
2.271004 Supp     b'-1:word:additional'
2.262766 Supp     b'-1:ner:SUPP'
2.243122 O        b'lemma:1'
2.243122 O        b'word:1'
2.236270 Supp     b'lemma:pq'
2.236270 Supp     b'word:PQ'
2.159352 Phase    b'lemma:stationary'
2.159352 Phase    b'word:stationary'
2.159352 Phase    b'lemma:exponential'
2.159352 Phase    b'word:exponential'
2.157554 Technique b'word:ChIP-Seq'
2.132022 Supp     b'+1:lemma:\xc2\xb5m'
2.132022 Supp     b'+1:word:\xc2\xb5M'
2.098040 Technique b'lemma:ChIP-exo'
2.097154 Supp     b'lemma:nh4cl'
2.072278 O        b'postag::'
2.063563 Gtype    b'-1:ner:GEN'
2.006673 O        b'postag:VBG'
1.993115 Gversion b'lemma:asm584v2'
1.993115 Gversion b'word:ASM584v2'
1.991176 O        b'lemma:2'
1.991176 O        b'word:2'
1.987399 Technique b'lemma:rna-seq'
1.986607 Gtype    b'lemma:\xce\xb4cra'
1.951316 Air      b'postag:RB'
1.929939 O        b'lemma:-'
1.929939 O        b'word:-'
1.925576 O        b'lemma:rpob'
1.925576 O        b'word:RpoB'
1.918499 O        b'-1:lemma:tag'
1.915585 Gtype    b'lemma:\xce\xb4fur'
1.915585 Gtype    b'word:\xce\x94fur'
1.910842 Gtype    b'+2:ner:SUPP'
1.909281 O        b'lemma:b'
1.909281 O        b'word:B'
1.907917 Supp     b'lemma:no3'
1.907917 Supp     b'word:NO3'
1.876523 O        b'lemma:.'
1.876523 O        b'postag:.'
1.876523 O        b'word:.'
1.867584 Gtype    b'word:\xce\x94cra'
1.867247 O        b'lemma:Cra'
1.865481 O        b'-1:word:tag'
1.854106 Air      b'word:anaerobic'
1.851218 O        b'postag:IN'
1.827946 O        b'-2:ner:MED'
1.812801 O        b'-1:lemma:0.3'
1.812801 O        b'-1:word:0.3'
1.809510 O        b'+1:postag:RB'
1.800338 O        b'lemma:3'
1.800338 O        b'word:3'
1.791593 Air      b'lemma:aerobic'
1.774016 Strain   b'+1:lemma:substr'
1.774016 Strain   b'+1:word:substr'
1.772749 O        b'+1:lemma:pq'
1.772749 O        b'+1:word:PQ'
1.758797 Supp     b'-1:word:Cra'
1.758570 O        b'word:A'
1.752827 O        b'+1:ner:MED'
1.701239 Gtype    b'lemma:type'
1.701239 Gtype    b'word:type'
1.698428 Substrain b'lemma:mg1655'
1.698428 Substrain b'word:MG1655'
1.694252 Air      b'postag:JJ'
1.685413 O        b'lemma:at'
1.684325 Air      b'-1:lemma:ChIP-Seq'
1.684325 Air      b'-1:word:ChIP-Seq'
1.683931 O        b'-1:word:Anaerobic'
1.676679 Med      b'lemma:MOPS'
1.676679 Med      b'word:MOPS'
1.667033 Vess     b'lemma:flask'
1.667033 Vess     b'-1:lemma:warm'
1.667033 Vess     b'word:flask'
1.667033 Vess     b'-1:word:warmed'
1.640122 Med      b'lemma:LB'
1.637222 O        b'lemma:rep2'
1.637222 O        b'word:rep2'
1.637222 O        b'lemma:rep1'
1.637222 O        b'word:rep1'
1.636631 O        b'lemma:purr'
1.636631 O        b'word:PurR'
1.618438 Supp     b'-1:lemma:vol'
1.618438 Supp     b'-1:word:vol'
1.589988 Supp     b'lemma:dpd'
1.589988 Supp     b'word:DPD'
1.586330 Gtype    b'+1:lemma:type'
1.586330 Gtype    b'+1:word:type'
1.585906 Supp     b'lemma:iptg'
1.585906 Supp     b'word:IPTG'
1.568676 O        b'-1:lemma:glucose'
1.568676 O        b'-1:word:glucose'
1.563412 O        b'lemma:CEL'
1.563412 O        b'word:CEL'
1.563372 O        b'lemma:with'
1.563372 O        b'word:with'
1.555129 Gtype    b'lemma:wild-type'
1.554713 O        b'-1:lemma:lb'
1.549894 Temp     b'lemma:\xc2\xb0c'
1.549894 Temp     b'word:\xc2\xb0C'
1.538798 Med      b'isUpper'
1.534821 pH       b'+1:postag:CD'
1.530017 Vess     b'-1:postag:VBN'
1.520586 Gtype    b'lemma:delta-fnr'
1.520586 Gtype    b'word:delta-fnr'
1.511381 Gtype    b'-1:postag:VBP'
1.499877 Anti     b'lemma:seqa'
1.499877 Anti     b'word:SeqA'
1.479334 Air      b'-1:lemma:-'
1.479334 Air      b'-1:word:-'
1.478254 Supp     b'lemma:nacl'
1.478254 Supp     b'word:NaCl'
1.475647 Technique b'word:RNA-Seq'
1.472843 O        b'-1:word:Aerobic'
1.467140 Air      b'lemma:anaeroibc'
1.467140 Air      b'word:Anaeroibc'
1.463689 Supp     b'+1:lemma:Deficient'
1.460609 Technique b'lemma:rnaseq'
1.460609 Technique b'word:RNASeq'
1.454725 Supp     b'lemma:Fe'
1.454725 Supp     b'word:Fe'
1.451147 Gversion b'word:ChIP-Seq'
1.448409 Supp     b'lemma:rifampicin'
1.448409 Supp     b'word:rifampicin'
1.440430 pH       b'lemma:ph5'
1.440430 pH       b'+1:lemma:.5'
1.440430 pH       b'word:pH5'
1.440430 pH       b'+1:word:.5'
1.436147 Temp     b'+1:lemma:\xc2\xb0c'
1.436147 Temp     b'+1:word:\xc2\xb0C'
1.421071 Gversion b'lemma:chip-seq'
1.411836 Supp     b'-1:lemma:Cra'
1.404742 Med      b'-1:word:ml'
1.402671 O        b'lemma:ompr'
1.402335 O        b'word:OmpR'
1.402195 Med      b'-1:lemma:ml'
1.397230 O        b'lemma:trpr'
1.397230 O        b'word:TrpR'
1.395742 Agit     b'+1:lemma:rpm'
1.395742 Agit     b'+1:word:rpm'
1.391506 Supp     b'lemma:Adenine'
1.391506 Supp     b'word:Adenine'
1.387982 Agit     b'lemma:rpm'
1.387982 Agit     b'word:rpm'
1.378260 O        b'-1:postag:NNS'
1.373427 O        b'word:Lrp'
1.372537 Med      b'+1:lemma:0.4'
1.372537 Med      b'+1:word:0.4'
1.362741 Gtype    b'postag:JJ'
1.362524 Gtype    b'lemma:arca8myc'
1.362524 Gtype    b'word:ArcA8myc'
1.362322 Gtype    b'-1:lemma:\xe2\x88\x86'
1.362322 Gtype    b'-1:word:\xe2\x88\x86'
1.353545 Anti     b'lemma:none'
1.353545 Anti     b'word:none'
1.352358 Air      b'-1:lemma:co2'
1.352358 Air      b'-1:word:CO2'
1.347635 Supp     b'lemma:arginine'
1.338396 Supp     b'+1:word:was'
1.333043 O        b'postag:VBN'
1.331401 Supp     b'-1:lemma:with'
1.331401 Supp     b'-1:word:with'
1.328824 Supp     b'lemma:glucose'
1.328824 Supp     b'word:glucose'
1.327073 O        b'+1:word:were'
1.325753 O        b'lemma:a'
1.321409 Supp     b'-1:lemma:+'
1.321409 Supp     b'-1:word:+'
1.321116 Gtype    b'lemma:pk4854'
1.321116 Gtype    b'word:PK4854'
1.319827 O        b'+1:lemma:od600'
1.319827 O        b'+1:word:OD600'
1.312956 OD       b'+1:postag:IN'
1.299696 Anti     b'lemma:\xcf\x8332'
1.299696 Anti     b'word:\xcf\x8332'
1.298351 O        b'lemma:chip-fnr'
1.298351 O        b'word:chip-Fnr'
1.295404 Supp     b'+1:lemma:iptg'
1.295404 Supp     b'+1:word:IPTG'
1.288322 Supp     b'lemma:acetate'
1.288322 Supp     b'word:acetate'
1.288225 Supp     b'+1:word:hours'
1.287965 Med      b'postag:NNP'
1.287159 O        b'+1:word:WT'
1.281379 O        b'+1:lemma:wt'
1.279492 O        b'+1:word:ChIP-Seq'
1.268455 Gversion b'lemma:nc'
1.268455 Gversion b'word:NC'
1.267032 Med      b'lemma:media'
1.267032 Med      b'word:media'
1.262609 Gtype    b'+1:lemma:pq'
1.262609 Gtype    b'+1:word:PQ'
1.261704 Gtype    b'-1:lemma:nsrr'
1.261704 Gtype    b'+1:lemma:flagtag'
1.261704 Gtype    b'-1:word:NsrR'
1.261704 Gtype    b'+1:word:Flagtag'
1.255297 Gtype    b'+1:postag::'
1.254593 Gtype    b'lemma:\xe2\x88\x86'
1.254593 Gtype    b'word:\xe2\x88\x86'
1.251488 Agit     b'-1:lemma:250'
1.251488 Agit     b'-1:word:250'
1.250312 O        b'-1:lemma:pq'
1.250312 O        b'-1:word:PQ'
1.245351 Gversion b'lemma:.2'
1.245351 Gversion b'-1:lemma:u00096'
1.245351 Gversion b'word:.2'
1.245351 Gversion b'-1:word:U00096'
1.243901 Temp     b'-1:word:sample'
1.235562 Med      b'lemma:minimal'
1.235562 Med      b'word:minimal'
1.231729 Temp     b'-1:lemma:sample'
1.231274 O        b'lemma:argr'
1.231274 O        b'word:ArgR'
1.230540 O        b'-1:lemma:ChIP-exo'
1.230479 O        b'lemma:chip-arca'
1.230479 O        b'word:chip-ArcA'
1.227428 Phase    b'-1:lemma:mid-log'
1.227428 Phase    b'-1:word:mid-log'
1.223795 Supp     b'lemma:Leu'
1.223795 Supp     b'word:Leu'
1.223404 Gtype    b'+1:lemma:with'
1.223404 Gtype    b'+1:word:with'
1.216688 Gtype    b'lemma:wildtype'
1.210604 Temp     b'-1:lemma:37'
1.210604 Temp     b'-1:word:37'
1.208403 O        b'word:C'
1.206237 O        b'lemma:affyexp'
1.206237 O        b'word:affyexp'
1.205299 Substrain b'lemma:mg1655star'
1.205299 Substrain b'word:MG1655star'
1.203662 Air      b'-1:postag::'
1.199150 Gtype    b'lemma:\xce\xb4oxyr'
1.199150 Gtype    b'word:\xce\x94oxyR'
1.195240 Gtype    b'lemma:dfnr'
1.195240 Gtype    b'word:dFNR'
1.190082 O        b'word:for'
1.188733 O        b'lemma:for'
1.182473 O        b'postag:DT'
1.177507 O        b'lemma:soxr'
1.177507 O        b'word:SoxR'
1.177507 O        b'lemma:soxs'
1.177507 O        b'word:SoxS'
1.174881 OD       b'-1:postag:IN'
1.172292 Gversion b'lemma:u00096'
1.172292 Gversion b'+1:lemma:.2'
1.172292 Gversion b'word:U00096'
1.172292 Gversion b'+1:word:.2'
1.170950 Gversion b'lemma:000913'
1.170950 Gversion b'word:000913'
1.168229 Gtype    b'lemma:\xce\xb4ompr'
1.168229 Gtype    b'word:\xce\x94ompR'
1.162090 Agit     b'lemma:250'
1.162090 Agit     b'word:250'
1.160562 Temp     b'lemma:43'
1.160562 Temp     b'word:43'
1.159379 Technique b'lemma:chip-seq'
1.157836 Med      b'-1:lemma:minimal'
1.157836 Med      b'-1:word:minimal'
1.153385 Supp     b'+1:lemma:1'
1.153385 Supp     b'+1:word:1'
1.145422 Temp     b'-1:lemma:43'
1.145422 Temp     b'-1:word:43'
1.139272 O        b'lemma:chip'
1.138808 Supp     b'-1:postag:IN'
1.135691 Substrain b'-1:lemma:.'
1.135691 Substrain b'-1:postag:.'
1.135691 Substrain b'-1:word:.'
1.134899 Phase    b'lemma:phase'
1.134899 Phase    b'word:phase'
1.131603 Vess     b'+1:lemma:at'
1.131603 Vess     b'+1:word:at'
1.126546 O        b'+1:lemma:250'
1.126546 O        b'+1:word:250'
1.125854 O        b'lemma:\xcf\x8332'
1.125854 O        b'word:\xcf\x8332'
1.124353 Gversion b'-1:lemma:nc'
1.124353 Gversion b'+1:lemma:000913'
1.124353 Gversion b'-1:word:NC'
1.124353 Gversion b'+1:word:000913'
1.117454 OD       b'lemma:od450'
1.117454 OD       b'word:OD450'
1.117454 OD       b'-1:word:At'
1.115560 O        b'lemma:gadx'
1.114389 Gtype    b'+1:lemma:ph5'
1.114389 Gtype    b'+1:word:pH5'
1.113816 Air      b'lemma:Anaerobic'
1.113566 Med      b'+1:postag:CD'
1.111443 Med      b'-1:lemma:fresh'
1.111443 Med      b'-1:word:fresh'
1.110626 Technique b'-1:lemma:chip-exo'
1.104447 O        b'+1:lemma:k-12'
1.104447 O        b'+1:word:K-12'
1.104099 Substrain b'+1:lemma:phtpg'
1.104099 Substrain b'+1:word:PhtpG'
1.103982 O        b'-1:lemma:anaerobic'
1.103763 Med      b'+1:lemma:2.0'
1.103763 Med      b'+1:word:2.0'
1.101968 Supp     b'+1:lemma:_'
1.101968 Supp     b'+1:word:_'
1.089943 Med      b'lemma:medium'
1.089943 Med      b'word:medium'
1.088653 Gtype    b'-1:lemma:_'
1.088653 Gtype    b'-1:word:_'
1.088611 Supp     b'word:NH4Cl'
1.083724 O        b'isNumber'
1.080507 O        b'-1:word:ChIP-exo'
1.078628 O        b'lemma::'
1.078628 O        b'word::'
1.075125 Supp     b'postag:NNP'
1.073929 Supp     b'+1:lemma:2'
1.073929 Supp     b'+1:word:2'
1.073408 O        b'-1:lemma:nh4cl'
1.067154 O        b'isLower'
1.062183 Technique b'+1:postag:NN'
1.061946 Gtype    b'lemma:WT'
1.050070 Gversion b'lemma:_'
1.050070 Gversion b'word:_'
1.048466 Technique b'postag:NNP'
1.042667 Supp     b'-1:postag:CD'
1.041353 Air      b'-1:lemma:_'
1.041353 Air      b'-1:word:_'
1.040189 O        b'-1:lemma:wt'
1.039245 OD       b'-1:lemma:at'
1.029698 OD       b'-1:lemma:od450'
1.029698 OD       b'-1:word:OD450'
1.028115 Vess     b'+1:postag:IN'
1.027714 O        b'+1:lemma:coli'
1.027714 O        b'+1:word:coli'
1.023279 Technique b'+1:lemma:rna-seq'
1.023279 Technique b'+1:word:RNA-seq'
1.023255 Technique b'+1:ner:TF'
1.019832 OD       b'lemma:0.3'
1.019832 OD       b'word:0.3'
1.019620 Supp     b'+1:lemma:deficient'
1.016289 Air      b'+1:lemma:%'
1.016289 Air      b'+1:word:%'
1.002601 Gtype    b'-1:lemma:rpob'
1.002601 Gtype    b'-1:word:RpoB'
1.001589 O        b'-1:lemma:nacl'
1.001589 O        b'-1:word:NaCl'
1.001113 O        b'word:GadX'
1.000952 Gtype    b'lemma:deltaseqa'
1.000952 Gtype    b'-1:lemma:old'
1.000952 Gtype    b'word:deltaSeqA'
1.000952 Gtype    b'-1:word:old'
0.998972 Anti     b'-1:lemma::'
0.998972 Anti     b'-1:word::'
0.997952 O        b'-1:lemma:acetate'
0.997952 O        b'-1:word:acetate'
0.997687 O        b'+1:lemma:43'
0.997687 O        b'+1:word:43'
0.997418 Phase    b'isLower'
0.993780 Supp     b'word:NH4CL'
0.993736 Gtype    b'-1:lemma::'
0.993736 Gtype    b'-1:word::'
0.991807 O        b'-1:ner:_'
0.983818 O        b'lemma:input'
0.983818 O        b'+1:lemma:chip-seq'
0.983818 O        b'word:Input'
0.983132 O        b'+1:lemma:fnr-8myc'
0.983132 O        b'+1:word:Fnr-8myc'
0.979722 O        b'-1:lemma:type'
0.979722 O        b'-1:word:type'
0.974871 O        b'+1:lemma:\xe2\x88\x86'
0.974871 O        b'+1:word:\xe2\x88\x86'
0.973662 O        b'+2:ner:KWSUPP'
0.967549 Gtype    b'word:wild-type'
0.967227 O        b'-1:word:fnr'
0.963551 Gtype    b'lemma:\xce\xb4soxr'
0.963551 Gtype    b'word:\xce\x94soxR'
0.959505 Gtype    b'+1:lemma:_'
0.959505 Gtype    b'+1:word:_'
0.956704 Supp     b'lemma:fructose'
0.956704 Supp     b'word:fructose'
0.956372 Gtype    b'lemma:\xce\xb4soxs'
0.956372 Gtype    b'word:\xce\x94soxS'
0.950248 Gtype    b'+1:lemma:control'
0.950248 Gtype    b'+1:word:control'
0.948183 O        b'+1:ner:_'
0.947333 Technique b'lemma:ChIP-Seq'
0.945321 O        b'+1:lemma:od450'
0.945321 O        b'word:At'
0.945321 O        b'+1:word:OD450'
0.943780 O        b'lemma:culture'
0.943187 Technique b'-1:lemma:IP'
0.943187 Technique b'-1:word:IP'
0.942651 Supp     b'+1:lemma:hour'
0.941576 O        b'lemma:s'
0.941576 O        b'word:S'
0.941501 Gtype    b'-1:lemma:ptac'
0.941501 Gtype    b'-1:word:Ptac'
0.930762 Supp     b'word:Arginine'
0.929515 O        b'+2:ner:_'
0.926317 O        b'-1:lemma:stpa'
0.926317 O        b'-1:word:stpA'
0.925774 O        b'lemma:contain'
0.925774 O        b'word:containing'
0.923908 O        b'lemma:harbor'
0.923908 O        b'word:harboring'
0.922774 Gtype    b'-1:lemma:wild'
0.922774 Gtype    b'-1:word:wild'
0.918159 O        b'lemma:oxyr'
0.918159 O        b'word:OxyR'
0.917839 Med      b'-1:lemma:LB'
0.917205 Technique b'-1:lemma:rna-seq'
0.917205 Technique b'-1:word:RNA-seq'
0.916783 O        b'-1:lemma:phase'
0.916783 O        b'-1:word:phase'
0.912042 Anti     b'+1:lemma:antibody'
0.912042 Anti     b'+1:word:antibody'
0.908725 Gtype    b'lemma:flagtag'
0.908725 Gtype    b'word:Flagtag'
0.907238 O        b'lemma:Fur'
0.907238 O        b'word:Fur'
0.904830 Air      b'-1:lemma:ryhb'
0.904830 Air      b'-1:word:ryhB'
0.904065 Technique b'-1:lemma:_'
0.904065 Technique b'-1:word:_'
0.901370 Air      b'+1:lemma:at'
0.901370 Air      b'+1:word:at'
0.900614 O        b'-1:ner:TF'
0.895861 pH       b'-1:postag:NN'
0.895195 Gtype    b'postag:NN'
0.892439 O        b'-1:lemma:media'
0.892439 O        b'-1:word:media'
0.892298 Air      b'-1:lemma:%'
0.892298 Air      b'-1:word:%'
0.888388 Supp     b'lemma:Trp'
0.888388 Supp     b'word:Trp'
0.887813 Air      b'-1:lemma:cm20'
0.887813 Air      b'-1:word:Cm20'
0.885620 Gtype    b'-1:lemma:from'
0.885620 Gtype    b'-1:word:from'
0.884867 Med      b'-1:lemma:in'
0.884867 Med      b'-1:word:in'
0.884542 OD       b'-1:lemma:~'
0.884542 OD       b'-1:word:~'
0.884066 Supp     b'-1:word:OmpR'
0.880866 Gtype    b'lemma:phtpg'
0.880866 Gtype    b'word:PhtpG'
0.878524 Strain   b'-1:lemma:.'
0.878524 Strain   b'-1:postag:.'
0.878524 Strain   b'-1:word:.'
0.876838 O        b'lemma:2-3'
0.876838 O        b'word:2-3'
0.875357 O        b'+1:lemma:mid-log'
0.875357 O        b'+1:word:mid-log'
0.874343 Supp     b'lemma:tryptophan'
0.874343 Supp     b'-1:lemma:mg/l'
0.874343 Supp     b'word:tryptophan'
0.874343 Supp     b'-1:word:mg/L'
0.872177 Supp     b'-1:lemma:contain'
0.872177 Supp     b'-1:word:containing'
0.871215 Gtype    b'+1:lemma::'
0.871215 Gtype    b'+1:word::'
0.867803 Gtype    b'lemma:wild'
0.867803 Gtype    b'word:wild'
0.866300 Med      b'+1:lemma:+'
0.866300 Med      b'+1:word:+'
0.865608 Gtype    b'-1:postag:VBG'
0.864379 Gversion b'+1:lemma:genome'
0.864379 Gversion b'+1:word:genome'
0.861731 Med      b'+1:lemma:-lrb-'
0.861731 Med      b'+1:word:-LRB-'
0.859691 Gtype    b'-1:lemma:factor'
0.859691 Gtype    b'-1:word:factor'
0.858093 Supp     b'+1:lemma:mm'
0.858093 Supp     b'+1:word:mM'
0.858093 Supp     b'+1:ner:KWSUPP'
0.856864 pH       b'+1:lemma:5.5'
0.856864 pH       b'+1:word:5.5'
0.852958 Med      b'+1:postag:-LRB-'
0.852293 O        b'+1:lemma:m9'
0.852293 O        b'+1:word:M9'
0.851923 Temp     b'word:sample'
0.850247 O        b'+1:postag:NNP'
0.847051 O        b'-1:lemma:into'


Top negative:
-0.082669 O        b'-1:postag:.'
-0.082669 O        b'-1:word:.'
-0.084094 O        b'+1:lemma:a'
-0.084274 O        b'-1:lemma:gadw'
-0.084983 Air      b'-1:postag:CC'
-0.086328 O        b'+1:lemma:25'
-0.086328 O        b'+1:word:25'
-0.086721 Phase    b'-1:word:at'
-0.088656 Gtype    b'-1:postag:NNS'
-0.089585 O        b'-1:lemma:Fur'
-0.089585 O        b'-1:word:Fur'
-0.089608 Vess     b'isNumber'
-0.090716 O        b'-1:word:\xce\x94cra'
-0.093973 OD       b'+1:lemma:.'
-0.093973 OD       b'+1:postag:.'
-0.093973 OD       b'+1:word:.'
-0.094020 O        b'-1:word:for'
-0.094987 Supp     b'-1:postag:NN'
-0.096097 O        b'+1:lemma:.'
-0.096097 O        b'+1:postag:.'
-0.096097 O        b'+1:word:.'
-0.096313 Phase    b'-2:ner:SUPP'
-0.097377 Strain   b'isNumber'
-0.097586 O        b'lemma:glucose'
-0.097586 O        b'word:glucose'
-0.099057 Technique b'-2:ner:_'
-0.099610 O        b'word:tag'
-0.099893 Supp     b'-2:ner:_'
-0.100019 O        b'lemma:\xc3\x9f'
-0.100019 O        b'word:\xc3\x9f'
-0.101022 Phase    b'-1:lemma:at'
-0.101612 O        b'+1:lemma:0.3'
-0.101612 O        b'+1:word:0.3'
-0.102093 O        b'+1:lemma:1/100'
-0.102093 O        b'+1:word:1/100'
-0.105480 O        b'+1:word:a'
-0.105773 O        b'lemma:8'
-0.105773 O        b'word:8'
-0.107272 Gtype    b'lemma:control'
-0.107272 Gtype    b'word:control'
-0.108294 O        b'+1:lemma:purify'
-0.108543 O        b'+1:lemma:~'
-0.108543 O        b'+1:word:~'
-0.110692 Supp     b'+1:postag:-RRB-'
-0.111057 O        b'lemma:7.6'
-0.111057 O        b'+1:lemma:;'
-0.111057 O        b'word:7.6'
-0.111057 O        b'+1:word:;'
-0.111752 OD       b'lemma:='
-0.111752 OD       b'word:='
-0.113000 Supp     b'-1:lemma:Fe'
-0.113000 Supp     b'-1:word:Fe'
-0.114210 O        b'word:the'
-0.116163 O        b'+1:lemma:antibody'
-0.116163 O        b'+1:word:antibody'
-0.117044 Technique b'isUpper'
-0.117769 O        b'lemma:rna'
-0.117769 O        b'word:RNA'
-0.117900 O        b'+1:postag:CD'
-0.118022 O        b'-1:lemma:0.2'
-0.118022 O        b'-1:word:0.2'
-0.121536 O        b'-1:postag:IN'
-0.121812 O        b'-1:lemma:at'
-0.122373 O        b'+1:lemma:-lcb-'
-0.122373 O        b'+1:word:-LCB-'
-0.124213 Gtype    b'+1:lemma:and'
-0.124213 Gtype    b'+1:word:and'
-0.126234 O        b'+1:lemma:rna'
-0.126234 O        b'+1:word:RNA'
-0.129317 Gtype    b'-1:postag:CC'
-0.129329 O        b'-1:lemma:with'
-0.129329 O        b'-1:word:with'
-0.129688 O        b'-1:lemma:sodium'
-0.129688 O        b'-1:word:Sodium'
-0.131634 O        b'+1:word:purified'
-0.135132 O        b'lemma:o2'
-0.135132 O        b'word:O2'
-0.135774 Supp     b'postag:CD'
-0.136039 Supp     b'lemma:.'
-0.136039 Supp     b'postag:.'
-0.136039 Supp     b'word:.'
-0.136259 Supp     b'lemma:,'
-0.136259 Supp     b'postag:,'
-0.136259 Supp     b'word:,'
-0.137604 O        b'-1:lemma:gadx'
-0.138908 O        b'+1:lemma:%'
-0.138908 O        b'+1:word:%'
-0.140016 O        b'+1:lemma:_'
-0.140016 O        b'+1:word:_'
-0.141844 O        b'word:anaerobic'
-0.143234 O        b'+1:lemma:pahse'
-0.143234 O        b'+1:word:pahse'
-0.147112 Gtype    b'-1:lemma:and'
-0.147112 Gtype    b'-1:word:and'
-0.147372 O        b'lemma:n2'
-0.147372 O        b'word:N2'
-0.149638 Air      b'+1:postag:NNS'
-0.150977 Temp     b'+2:ner:_'
-0.151657 Gtype    b'+1:lemma:b'
-0.151657 Gtype    b'+1:word:B'
-0.151992 O        b'+1:lemma:gadx'
-0.152654 O        b'lemma:nitrate'
-0.152654 O        b'word:nitrate'
-0.153046 Anti     b'-1:postag:CD'
-0.153942 O        b'-1:lemma:minimal'
-0.153942 O        b'-1:word:minimal'
-0.154866 O        b'+1:lemma:ph'
-0.154866 O        b'+1:word:pH'
-0.156944 O        b'lemma:\xe2\x88\x86'
-0.156944 O        b'word:\xe2\x88\x86'
-0.156956 O        b'-1:lemma:final'
-0.156956 O        b'-1:word:final'
-0.157711 O        b'lemma:dissolve'
-0.157711 O        b'word:dissolved'
-0.158600 O        b'+1:lemma:delta'
-0.158600 O        b'+1:word:delta'
-0.159548 O        b'+1:lemma:media'
-0.159548 O        b'+1:word:media'
-0.162257 Supp     b'+2:ner:KWSUPP'
-0.162648 O        b'-1:lemma:the'
-0.162877 Supp     b'postag:CC'
-0.163109 Supp     b'-1:postag:VBN'
-0.165035 O        b'-1:lemma:mm'
-0.165035 O        b'-1:word:mM'
-0.165219 O        b'+1:lemma:minimal'
-0.165219 O        b'+1:word:minimal'
-0.165932 O        b'+1:lemma:fecl2'
-0.165932 O        b'+1:word:FeCl2'
-0.168322 Phase    b'isNumber'
-0.168911 OD       b'+1:lemma:2.0'
-0.168911 OD       b'+1:word:2.0'
-0.170717 Gtype    b'+1:lemma:-rrb-'
-0.170717 Gtype    b'+1:word:-RRB-'
-0.170874 Phase    b'+1:postag:NN'
-0.172125 Air      b'-1:lemma::'
-0.172125 Air      b'-1:word::'
-0.173371 Substrain b'+2:ner:_'
-0.174291 O        b'+2:ner:TF'
-0.175312 Gtype    b'+1:postag:-LRB-'
-0.176163 Supp     b'-1:lemma:dpd'
-0.176163 Supp     b'-1:word:DPD'
-0.177186 Vess     b'postag:NN'
-0.178717 O        b'-1:lemma:delta'
-0.178717 O        b'-1:word:delta'
-0.178800 Supp     b'lemma:-rrb-'
-0.178800 Supp     b'word:-RRB-'
-0.179307 Med      b'-1:ner:MED'
-0.180022 O        b'+1:lemma:5'
-0.180022 O        b'+1:word:5'
-0.180201 O        b'-1:lemma:\xe2\x88\x86'
-0.180201 O        b'-1:word:\xe2\x88\x86'
-0.181082 Air      b'postag:CD'
-0.181926 O        b'-1:lemma:control'
-0.181926 O        b'-1:word:control'
-0.182783 O        b'+1:word:Anaerobic'
-0.182936 O        b'-1:lemma:affinity'
-0.183053 Gtype    b'-1:lemma:,'
-0.183053 Gtype    b'-1:postag:,'
-0.183053 Gtype    b'-1:word:,'
-0.184792 O        b'lemma:ph'
-0.184792 O        b'word:pH'
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