********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70.txt

best params:{'c1': 0.11720815886647881, 'c2': 0.026187454028628224}
best CV score:0.8623150078546968
model size: 0.12M

Flat F1: 0.7729583914691408
             precision    recall  f1-score   support

         OD      1.000     0.818     0.900        22
         pH      1.000     1.000     1.000         8
  Technique      0.955     0.913     0.933        23
        Med      1.000     0.925     0.961        53
       Temp      1.000     0.690     0.816        29
       Vess      1.000     1.000     1.000         1
       Agit      0.000     0.000     0.000         0
      Phase      0.875     0.933     0.903        15
        Air      0.556     0.362     0.439        69
       Anti      0.579     1.000     0.733        11
     Strain      0.000     0.000     0.000         1
      Gtype      0.877     0.753     0.810        85
  Substrain      0.000     0.000     0.000         0
       Supp      0.735     0.806     0.769       134
   Gversion      0.000     0.000     0.000         0

avg / total      0.811     0.752     0.773       451


Top likely transitions:
Temp   -> Temp    5.534350
Anti   -> Anti    5.202035
OD     -> OD      5.162013
Agit   -> Agit    5.101850
Supp   -> Supp    4.862669
Med    -> Med     4.742631
Gtype  -> Gtype   4.690492
Gversion -> Gversion 4.253159
Phase  -> Phase   4.193306
O      -> O       4.143359
Air    -> Air     4.079274
Technique -> Technique 3.737825
pH     -> pH      2.701172
Substrain -> Gtype   1.413086
Gtype  -> Supp    1.215131
O      -> Gtype   1.183861
O      -> Technique 1.124196
Gtype  -> Air     0.906865
O      -> Supp    0.894361
Air    -> O       0.782291
Technique -> Air     0.697709
Gtype  -> pH      0.616305
Temp   -> O       0.413091
Supp   -> O       0.344753
O      -> Temp    0.252965
O      -> Anti    0.243401
Med    -> O       0.118001
O      -> pH      0.044367
Strain -> O       0.008900
O      -> Phase   0.000404
O      -> Gversion 0.000174
O      -> Agit    -0.000001
OD     -> O       -0.000957
O      -> OD      -0.000978
Anti   -> Med     -0.003482
Phase  -> O       -0.006839
Technique -> O       -0.130344
Agit   -> O       -0.145879
Air    -> Supp    -0.189667
O      -> Med     -0.260087
Phase  -> Supp    -0.337496
Gtype  -> Anti    -0.357408
Phase  -> OD      -0.410012
OD     -> Air     -0.412447
Air    -> Temp    -0.475634
Gtype  -> Med     -0.476794
Air    -> Phase   -0.503738
Gtype  -> O       -0.571166
Air    -> Med     -0.589897
O      -> Air     -0.677813


Top unlikely transitions:
Med    -> Med     4.742631
Gtype  -> Gtype   4.690492
Gversion -> Gversion 4.253159
Phase  -> Phase   4.193306
O      -> O       4.143359
Air    -> Air     4.079274
Technique -> Technique 3.737825
pH     -> pH      2.701172
Substrain -> Gtype   1.413086
Gtype  -> Supp    1.215131
O      -> Gtype   1.183861
O      -> Technique 1.124196
Gtype  -> Air     0.906865
O      -> Supp    0.894361
Air    -> O       0.782291
Technique -> Air     0.697709
Gtype  -> pH      0.616305
Temp   -> O       0.413091
Supp   -> O       0.344753
O      -> Temp    0.252965
O      -> Anti    0.243401
Med    -> O       0.118001
O      -> pH      0.044367
Strain -> O       0.008900
O      -> Phase   0.000404
O      -> Gversion 0.000174
O      -> Agit    -0.000001
OD     -> O       -0.000957
O      -> OD      -0.000978
Anti   -> Med     -0.003482
Phase  -> O       -0.006839
Technique -> O       -0.130344
Agit   -> O       -0.145879
Air    -> Supp    -0.189667
O      -> Med     -0.260087
Phase  -> Supp    -0.337496
Gtype  -> Anti    -0.357408
Phase  -> OD      -0.410012
OD     -> Air     -0.412447
Air    -> Temp    -0.475634
Gtype  -> Med     -0.476794
Air    -> Phase   -0.503738
Gtype  -> O       -0.571166
Air    -> Med     -0.589897
O      -> Air     -0.677813
Technique -> pH      -0.697146
Supp   -> Med     -0.874957
Technique -> Gtype   -0.966031
Substrain -> O       -1.152021
Med    -> Supp    -1.883468


Top positive:
5.346056 Air      b'word:Aerobic'
4.814989 O        b'lemma:_'
4.814989 O        b'word:_'
4.683626 Air      b'lemma:anaerobic'
4.137422 O        b'word:Cra'
3.717067 Air      b'postag:RB'
3.648734 Technique b'word:ChIP-Seq'
3.591761 O        b'postag:IN'
3.527991 Gtype    b'lemma:wt'
3.502005 O        b'-1:lemma:ChIP-exo'
3.404088 Gtype    b'lemma:wild-type'
3.374603 Air      b'word:Anaerobic'
3.313814 Technique b'lemma:ChIP-exo'
3.289286 Supp     b'lemma:nh4cl'
3.261253 O        b'postag::'
3.210614 Supp     b'lemma:Iron'
3.210614 Supp     b'word:Iron'
3.210614 Supp     b'+1:word:Deficient'
3.205283 Technique b'word:ChIP-exo'
3.177621 Supp     b'lemma:pq'
3.177621 Supp     b'word:PQ'
3.149226 Technique b'word:ChIPSeq'
3.063798 O        b'lemma:2'
3.063798 O        b'word:2'
3.039767 Supp     b'-1:word:Cra'
2.926997 Strain   b'+1:lemma:substr'
2.926997 Strain   b'+1:word:substr'
2.924815 Gtype    b'lemma:type'
2.924815 Gtype    b'word:type'
2.895571 Med      b'lemma:MOPS'
2.895571 Med      b'word:MOPS'
2.886364 Phase    b'lemma:mid-log'
2.886364 Phase    b'word:mid-log'
2.877854 O        b'lemma:-'
2.877854 O        b'word:-'
2.870915 Technique b'lemma:rna-seq'
2.819786 Gtype    b'word:WT'
2.808619 O        b'lemma:rpob'
2.808619 O        b'word:RpoB'
2.775553 O        b'lemma:1'
2.775553 O        b'word:1'
2.716320 Gversion b'lemma:asm584v2'
2.716320 Gversion b'word:ASM584v2'
2.606208 O        b'-1:lemma:tag'
2.586384 O        b'lemma:Custom'
2.586384 O        b'word:Custom'
2.582328 O        b'lemma:.'
2.582328 O        b'postag:.'
2.582328 O        b'word:.'
2.554026 Gtype    b'lemma:\xce\xb4cra'
2.550784 Gtype    b'word:\xce\x94cra'
2.548130 O        b'lemma:chip'
2.540102 Phase    b'lemma:exponential'
2.540102 Phase    b'word:exponential'
2.540102 Phase    b'lemma:stationary'
2.540102 Phase    b'word:stationary'
2.534852 O        b'lemma:3'
2.534852 O        b'word:3'
2.483583 Supp     b'+1:lemma:\xc2\xb5m'
2.483583 Supp     b'+1:word:\xc2\xb5M'
2.428266 Gtype    b'+1:lemma:type'
2.428266 Gtype    b'+1:word:type'
2.423833 Technique b'lemma:chipseq'
2.335552 Supp     b'lemma:glucose'
2.335552 Supp     b'word:glucose'
2.303572 O        b'lemma:b'
2.303572 O        b'word:B'
2.275983 Supp     b'lemma:arginine'
2.258897 O        b'postag:CC'
2.258702 Supp     b'lemma:nacl'
2.258702 Supp     b'word:NaCl'
2.248340 O        b'lemma:a'
2.240067 O        b'-1:word:tag'
2.219665 O        b'+1:lemma:pq'
2.219665 O        b'+1:word:PQ'
2.201128 O        b'lemma:ompr'
2.201128 O        b'word:OmpR'
2.196031 Supp     b'lemma:rifampicin'
2.196031 Supp     b'word:rifampicin'
2.166584 Substrain b'lemma:mg1655'
2.166584 Substrain b'word:MG1655'
2.150321 Gtype    b'lemma:flag-tag'
2.150321 Gtype    b'-1:lemma:c-terminal'
2.150321 Gtype    b'word:Flag-tag'
2.150321 Gtype    b'-1:word:C-terminal'
2.144846 Gtype    b'-1:postag:VBG'
2.133181 pH       b'+1:postag:CD'
2.127721 O        b'word:A'
2.115852 O        b'-1:word:Aerobic'
2.096172 Gtype    b'lemma:delta-fnr'
2.096172 Gtype    b'word:delta-fnr'
2.095669 Gversion b'lemma:nc'
2.095669 Gversion b'word:NC'
2.056559 Technique b'lemma:rnaseq'
2.056559 Technique b'word:RNASeq'
2.056377 Air      b'word:anaerobic'
2.035701 O        b'+1:postag:RB'
2.004258 Supp     b'lemma:acetate'
2.004258 Supp     b'word:acetate'
1.965988 O        b'+1:postag:NNP'
1.964752 Gtype    b'-1:lemma:\xe2\x88\x86'
1.964752 Gtype    b'-1:word:\xe2\x88\x86'
1.910185 Gtype    b'lemma:\xe2\x88\x86'
1.910185 Gtype    b'word:\xe2\x88\x86'
1.904605 Strain   b'lemma:k-12'
1.904605 Strain   b'word:K-12'
1.891315 Gtype    b'postag:-LRB-'
1.887141 Air      b'-1:lemma:ChIP-Seq'
1.887141 Air      b'-1:word:ChIP-Seq'
1.880957 Agit     b'+1:lemma:rpm'
1.880957 Agit     b'+1:word:rpm'
1.877174 O        b'postag:VBN'
1.877047 Supp     b'-1:lemma:with'
1.877047 Supp     b'-1:word:with'
1.865462 Gversion b'-1:lemma:nc'
1.865462 Gversion b'-1:word:NC'
1.861443 Gtype    b'lemma:arca8myc'
1.861443 Gtype    b'word:ArcA8myc'
1.839749 O        b'+1:word:were'
1.838491 O        b'+1:word:ChIP-Seq'
1.824231 O        b'lemma:rep1'
1.824231 O        b'word:rep1'
1.824111 Supp     b'lemma:nitrate'
1.824111 Supp     b'word:nitrate'
1.816106 O        b'-1:lemma:lb'
1.816106 O        b'-1:word:LB'
1.809240 Technique b'-1:lemma:chip-exo'
1.802237 Gtype    b'word:cra'
1.797362 Agit     b'lemma:rpm'
1.797362 Agit     b'word:rpm'
1.796466 Anti     b'lemma:seqa'
1.796466 Anti     b'word:SeqA'
1.788369 Supp     b'-1:lemma:Cra'
1.787306 O        b'lemma:rep3'
1.787306 O        b'word:rep3'
1.759779 O        b'isLower'
1.740278 O        b'lemma:Cra'
1.724562 O        b'lemma:with'
1.724562 O        b'word:with'
1.722881 Med      b'+1:lemma:0.4'
1.722881 Med      b'+1:word:0.4'
1.704798 O        b'lemma:at'
1.698923 Gversion b'lemma:chip-seq'
1.683530 Gtype    b'lemma:pk4854'
1.683530 Gtype    b'word:PK4854'
1.671411 Air      b'lemma:aerobic'
1.666004 Vess     b'lemma:flask'
1.666004 Vess     b'-1:lemma:warm'
1.666004 Vess     b'word:flask'
1.666004 Vess     b'-1:word:warmed'
1.665360 Gtype    b'postag:NN'
1.664894 Supp     b'lemma:no3'
1.664894 Supp     b'word:NO3'
1.657234 Anti     b'lemma:none'
1.657234 Anti     b'word:none'
1.654372 O        b'lemma:culture'
1.643899 Supp     b'-1:lemma:+'
1.643899 Supp     b'-1:word:+'
1.641571 Air      b'-1:postag::'
1.637039 Supp     b'-1:lemma:vol'
1.637039 Supp     b'-1:word:vol'
1.618213 Supp     b'lemma:dpd'
1.618213 Supp     b'word:DPD'
1.611503 O        b'-1:lemma:glucose'
1.611503 O        b'-1:word:glucose'
1.609875 Anti     b'lemma:\xcf\x8332'
1.609875 Anti     b'word:\xcf\x8332'
1.607928 Gtype    b'lemma:\xce\xb4soxr'
1.607928 Gtype    b'word:\xce\x94soxR'
1.605256 Med      b'-1:lemma:ml'
1.605256 Med      b'-1:word:ml'
1.602162 Technique b'word:RNA-Seq'
1.589352 Air      b'lemma:Aerobic'
1.584726 Gversion b'word:ChIP-Seq'
1.580172 Air      b'lemma:anaeroibc'
1.580172 Air      b'word:Anaeroibc'
1.571537 O        b'lemma:\xcf\x8332'
1.571537 O        b'word:\xcf\x8332'
1.571064 Supp     b'lemma:Leu'
1.571064 Supp     b'word:Leu'
1.570481 Gtype    b'lemma:\xce\xb4fur'
1.570481 Gtype    b'word:\xce\x94fur'
1.563108 O        b'-1:lemma:0.3'
1.563108 O        b'-1:word:0.3'
1.559415 Vess     b'-1:postag:VBN'
1.558118 O        b'lemma::'
1.558118 O        b'word::'
1.538469 Med      b'lemma:broth'
1.538469 Med      b'-1:lemma:L'
1.538469 Med      b'word:broth'
1.538469 Med      b'-1:word:L'
1.521808 Gtype    b'+1:lemma:with'
1.521808 Gtype    b'+1:word:with'
1.520140 Air      b'lemma:anaerobically'
1.520140 Air      b'word:anaerobically'
1.513230 Supp     b'lemma:Fe'
1.513230 Supp     b'word:Fe'
1.508184 O        b'-1:lemma:wt'
1.482348 Gtype    b'word:Wild-type'
1.478153 O        b'lemma:harbor'


Top negative:
-0.165864 O        b'word:glucose'
-0.166177 Supp     b'lemma:10'
-0.166177 Supp     b'word:10'
-0.167098 Air      b'isLower'
-0.167761 O        b'-1:word:from'
-0.171430 O        b'-1:lemma:delta'
-0.171430 O        b'-1:word:delta'
-0.173899 O        b'+1:word:was'
-0.175064 O        b'-1:lemma:final'
-0.175064 O        b'-1:word:final'
-0.175415 O        b'+1:lemma:for'
-0.175588 O        b'-1:lemma:sodium'
-0.175588 O        b'-1:word:Sodium'
-0.176424 O        b'-1:lemma:m'
-0.176424 O        b'-1:word:M'
-0.177631 O        b'-1:postag:DT'
-0.184729 Supp     b'+1:lemma:rifampicin'
-0.184729 Supp     b'+1:word:rifampicin'
-0.185903 O        b'lemma:fructose'
-0.185903 O        b'word:fructose'
-0.186123 Air      b'-1:postag:VBN'
-0.189612 O        b'word:cells'
-0.196713 O        b'-1:lemma:1m'
-0.196713 O        b'-1:word:1M'
-0.207755 O        b'-1:lemma:cra'
-0.208558 O        b'+1:word:C'
-0.208657 Med      b'+1:postag:NN'
-0.233153 O        b'word:ChIP-exo'
-0.245194 Supp     b'+1:lemma:dpd'
-0.245194 Supp     b'+1:word:DPD'
-0.252316 O        b'-1:word:the'
-0.254853 O        b'+1:lemma:.'
-0.254853 O        b'+1:postag:.'
-0.254853 O        b'+1:word:.'
-0.256451 O        b'+1:lemma:until'
-0.256451 O        b'+1:word:until'
-0.258020 O        b'-1:postag:JJ'
-0.259972 O        b'lemma:20'
-0.259972 O        b'word:20'
-0.260590 Med      b'+1:postag:IN'
-0.262788 O        b'-1:lemma:the'
-0.270489 Phase    b'+1:postag:NN'
-0.272030 Gtype    b'+1:postag:CD'
-0.288673 pH       b'postag:NN'
-0.294614 O        b'+1:lemma:supplement'
-0.294614 O        b'+1:word:supplemented'
-0.295450 Technique b'-1:postag::'
-0.298173 OD       b'isNumber'
-0.300823 O        b'+1:postag:-LRB-'
-0.316781 O        b'lemma:minimal'
-0.316781 O        b'word:minimal'
-0.331660 O        b'-1:postag:-LRB-'
-0.339761 O        b'-1:lemma:mm'
-0.339761 O        b'-1:word:mM'
-0.342651 O        b'-1:lemma:n2'
-0.342651 O        b'-1:word:N2'
-0.348976 O        b'-1:lemma:37'
-0.348976 O        b'-1:word:37'
-0.350719 pH       b'isUpper'
-0.355836 O        b'lemma:medium'
-0.355836 O        b'word:medium'
-0.358797 O        b'-1:lemma:co2'
-0.358797 O        b'-1:word:CO2'
-0.360206 O        b'lemma:37'
-0.360206 O        b'word:37'
-0.363212 Anti     b'isUpper'
-0.363229 O        b'lemma:aerobically'
-0.363229 O        b'word:aerobically'
-0.387107 O        b'-1:lemma:ph'
-0.387107 O        b'-1:word:pH'
-0.388937 Air      b'-1:postag:CC'
-0.403999 Supp     b'+1:lemma:acetate'
-0.403999 Supp     b'+1:word:acetate'
-0.405755 O        b'+1:postag:IN'
-0.405984 Supp     b'-1:lemma:-lrb-'
-0.405984 Supp     b'-1:word:-LRB-'
-0.407871 O        b'lemma:\xce\xb4fur'
-0.407871 O        b'word:\xce\x94fur'
-0.410756 O        b'lemma:mid-log'
-0.410756 O        b'word:mid-log'
-0.413451 Gtype    b'+1:lemma:-lrb-'
-0.413451 Gtype    b'+1:word:-LRB-'
-0.415001 O        b'lemma:nitrate'
-0.415001 O        b'word:nitrate'
-0.418409 Gtype    b'-1:postag:CD'
-0.421257 Supp     b'+1:lemma:fructose'
-0.421257 Supp     b'+1:word:fructose'
-0.422476 O        b'+1:postag:-RRB-'
-0.439758 Supp     b'+1:lemma:nacl'
-0.439758 Supp     b'+1:word:NaCl'
-0.439850 Supp     b'-1:postag:-LRB-'
-0.441680 O        b'+1:lemma:2.0'
-0.441680 O        b'+1:word:2.0'
-0.451586 O        b'-1:lemma:until'
-0.451586 O        b'-1:word:until'
-0.452607 Air      b'-1:lemma:or'
-0.452607 Air      b'-1:word:or'
-0.458248 Med      b'-1:postag:NN'
-0.459831 O        b'+1:lemma:+'
-0.459831 O        b'+1:word:+'
-0.460799 O        b'-1:lemma:dissolve'
-0.460799 O        b'+1:lemma:methanol'
-0.460799 O        b'-1:word:dissolved'
-0.460799 O        b'+1:word:methanol'
-0.475659 O        b'-1:lemma:rpob'
-0.475659 O        b'-1:word:RpoB'
-0.489439 O        b'-1:lemma:chip-exo'
-0.516959 O        b'lemma:methanol'
-0.516959 O        b'word:methanol'
-0.519060 O        b'lemma:0.3'
-0.519060 O        b'word:0.3'
-0.521823 O        b'-1:lemma:\xe2\x88\x86'
-0.521823 O        b'-1:word:\xe2\x88\x86'
-0.532528 Supp     b'postag:CC'
-0.555308 O        b'+1:lemma:at'
-0.555308 O        b'+1:word:at'
-0.568935 O        b'+1:word:ChIP-exo'
-0.587243 pH       b'isLower'
-0.598998 O        b'lemma:anaerobically'
-0.598998 O        b'word:anaerobically'
-0.601761 O        b'lemma:30'
-0.601761 O        b'word:30'
-0.604543 Phase    b'isUpper'
-0.609562 O        b'+1:lemma:1m'
-0.609562 O        b'+1:word:1M'
-0.624149 O        b'+1:lemma:g/l'
-0.624149 O        b'+1:word:g/L'
-0.632418 O        b'-1:lemma:30'
-0.632418 O        b'-1:word:30'
-0.633125 O        b'lemma:2h'
-0.633125 O        b'-1:lemma:additional'
-0.633125 O        b'word:2h'
-0.633125 O        b'-1:word:additional'
-0.634616 O        b'+1:lemma:mm'
-0.634616 O        b'+1:word:mM'
-0.640250 Air      b'+1:postag:JJ'
-0.653940 O        b'lemma:of'
-0.653940 O        b'word:of'
-0.659372 O        b'-1:postag:IN'
-0.692700 O        b'-1:lemma:nsrr'
-0.692700 O        b'-1:word:NsrR'
-0.702058 O        b'lemma:wt'
-0.715997 Supp     b'-1:postag:NNP'
-0.732594 O        b'-1:lemma:ml'
-0.732594 O        b'-1:word:ml'
-0.739666 Supp     b'+1:postag:VBN'
-0.740410 O        b'lemma:nitrogen'
-0.740410 O        b'word:nitrogen'
-0.774393 O        b'-1:lemma:1'
-0.774393 O        b'-1:word:1'
-0.775963 Med      b'-1:postag:IN'
-0.800588 O        b'-1:lemma:2'
-0.800588 O        b'-1:word:2'
-0.803460 O        b'lemma:media'
-0.803460 O        b'word:media'
-0.804540 O        b'-1:postag::'
-0.811529 O        b'-1:lemma:IP'
-0.811529 O        b'-1:word:IP'
-0.838460 Air      b'postag:NN'
-0.839107 O        b'postag:RB'
-0.861540 O        b'-1:lemma:fresh'
-0.861540 O        b'-1:word:fresh'
-0.888556 O        b'+1:lemma:1'
-0.888556 O        b'+1:word:1'
-0.893910 Temp     b'postag:NN'
-0.912818 O        b'-1:lemma:sample'
-0.918416 O        b'+1:postag:VBG'
-0.932692 Gtype    b'isUpper'
-0.946508 Agit     b'isUpper'
-0.991033 Gtype    b'isLower'
-1.014529 O        b'+1:lemma:in'
-1.014529 O        b'+1:word:in'
-1.018421 Technique b'isNumber'
-1.123268 O        b'lemma:rifampicin'
-1.123268 O        b'word:rifampicin'
-1.152939 Technique b'isLower'
-1.187285 Supp     b'+1:lemma:-lrb-'
-1.187285 Supp     b'+1:word:-LRB-'
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