GSE65244-GSM1590720-GPL14548-PMID:.tsv
1.13 KB
"GATC software for read mapping on MG1655" "data_processing.1"
"verified with in-house pipeline" "data_processing.2"
"Gene wise natural spline interpolation of temporal data from initial time points to a dataset of 10 minutes steps (see processed data files). Expression values at the time points of the raw data are not affected by the interpolation." "data_processing.3"
"gene expression sum normalized to 1 at each time point" "data_processing.4"
"Supplementary_files_format_and_content: expression of genes in time, rows = genes, cols = time points" "data_processing.5"
"RNA extraction Kit" "extract_protocol_ch1.1"
"GATC" "extract_protocol_ch1.2"
"LB medium, 37°C, airated, constant pH 7.5" "growth_protocol_ch1.1"
"Escherichia coli" "organism_ch1.1"
"Escherichia coli CSH50 Δfis" "source_name_ch1.1"
"Fis – 420 min" "title.1"
"RNA-Seq" "library_strategy.1"
"strain: CSH50" "characteristics_ch1.1"
"genotype: delta-fis" "characteristics_ch1.2"
"time: 420 minutes" "characteristics_ch1.3"
"LB medium, 37°C, airated, constant pH 7.5" "growth_protocol_ch1.1"
"Escherichia coli" "organism_ch1.1"
"Escherichia coli CSH50 Δfis" "source_name_ch1.1"