report_Run8_v12.txt 37.9 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.06909256986662918, 'c2': 0.015940529762311407}
best CV score:0.8426311049791738
model size: 0.15M

Flat F1: 0.8176390283954057
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      1.000     0.800     0.889        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.600     0.580     0.590        88
       Anti      0.929     1.000     0.963        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.910     0.782     0.841        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.864     0.838     0.851       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.858     0.785     0.818       484


Top likely transitions:
Temp   -> Temp    5.819748
OD     -> OD      5.406036
Anti   -> Anti    5.313352
Gtype  -> Gtype   4.728188
Gversion -> Gversion 4.697276
Med    -> Med     4.596474
Phase  -> Phase   4.560962
Supp   -> Supp    3.895323
Technique -> Technique 3.889580
O      -> O       3.850031
pH     -> pH      3.425611
Air    -> Air     3.152703
Agit   -> Agit    2.329616
Substrain -> Gtype   1.903346
O      -> Technique 0.718223
O      -> Gtype   0.304471
Technique -> Air     0.259731
Temp   -> O       0.202996
Gtype  -> Supp    0.198016
Gtype  -> pH      0.036028
Phase  -> Med     -0.000058
Gtype  -> Phase   -0.000079
OD     -> Supp    -0.048825
O      -> Temp    -0.069176
Air    -> Agit    -0.083460
Gtype  -> Technique -0.087034
Phase  -> Air     -0.115583
Agit   -> Air     -0.124719
Anti   -> O       -0.127474
Supp   -> Gtype   -0.132779
Anti   -> Gtype   -0.173770
Supp   -> Air     -0.209015
O      -> Anti    -0.248949
Phase  -> O       -0.254113
Technique -> Gtype   -0.254154
O      -> Supp    -0.279193
Anti   -> Supp    -0.280526
Air    -> Phase   -0.346658
Air    -> O       -0.359640
Temp   -> Med     -0.384210
Med    -> O       -0.387023
Phase  -> OD      -0.393327
Gtype  -> Temp    -0.410054
Air    -> Med     -0.466924
OD     -> O       -0.513325
O      -> Phase   -0.523256
O      -> OD      -0.651905
OD     -> Air     -0.679789
Gtype  -> Med     -0.724897
Supp   -> O       -0.756015
Technique -> O       -0.829323
Air    -> Supp    -0.913066
O      -> Med     -1.077044
Substrain -> O       -1.351950
Gtype  -> O       -1.356082
Technique -> pH      -1.379599
Supp   -> Med     -1.861887
O      -> Air     -1.862945
Med    -> Supp    -2.096105


Top unlikely transitions:
Temp   -> Temp    5.819748
OD     -> OD      5.406036
Anti   -> Anti    5.313352
Gtype  -> Gtype   4.728188
Gversion -> Gversion 4.697276
Med    -> Med     4.596474
Phase  -> Phase   4.560962
Supp   -> Supp    3.895323
Technique -> Technique 3.889580
O      -> O       3.850031
pH     -> pH      3.425611
Air    -> Air     3.152703
Agit   -> Agit    2.329616
Substrain -> Gtype   1.903346
O      -> Technique 0.718223
O      -> Gtype   0.304471
Technique -> Air     0.259731
Temp   -> O       0.202996
Gtype  -> Supp    0.198016
Gtype  -> pH      0.036028
Phase  -> Med     -0.000058
Gtype  -> Phase   -0.000079
OD     -> Supp    -0.048825
O      -> Temp    -0.069176
Air    -> Agit    -0.083460
Gtype  -> Technique -0.087034
Phase  -> Air     -0.115583
Agit   -> Air     -0.124719
Anti   -> O       -0.127474
Supp   -> Gtype   -0.132779
Anti   -> Gtype   -0.173770
Supp   -> Air     -0.209015
O      -> Anti    -0.248949
Phase  -> O       -0.254113
Technique -> Gtype   -0.254154
O      -> Supp    -0.279193
Anti   -> Supp    -0.280526
Air    -> Phase   -0.346658
Air    -> O       -0.359640
Temp   -> Med     -0.384210
Med    -> O       -0.387023
Phase  -> OD      -0.393327
Gtype  -> Temp    -0.410054
Air    -> Med     -0.466924
OD     -> O       -0.513325
O      -> Phase   -0.523256
O      -> OD      -0.651905
OD     -> Air     -0.679789
Gtype  -> Med     -0.724897
Supp   -> O       -0.756015
Technique -> O       -0.829323
Air    -> Supp    -0.913066
O      -> Med     -1.077044
Substrain -> O       -1.351950
Gtype  -> O       -1.356082
Technique -> pH      -1.379599
Supp   -> Med     -1.861887
O      -> Air     -1.862945
Med    -> Supp    -2.096105


Top positive:
6.060088 Anti     b'-2:lemma:antibody'
5.205823 O        b'-2:lemma:_'
4.375381 Gtype    b'hGreek'
4.298299 Phase    b'-2:lemma:phase'
4.260188 Air      b'word:Aerobic'
3.998424 O        b'lemma:_'
3.998424 O        b'word:_'
3.948940 Air      b'lemma:anaerobic'
3.733796 Gtype    b'-2:lemma:genotype/variation'
3.627210 Air      b'word:Anaerobic'
3.557701 Med      b'word:LB'
3.451883 Gtype    b'word:WT'
3.436921 Supp     b'-2:lemma:shake'
3.419672 O        b'word:Cra'
3.394696 Gtype    b'lemma:type'
3.394696 Gtype    b'word:type'
3.364518 Supp     b'lemma:nh4cl'
3.297071 Technique b'word:ChIPSeq'
3.179689 O        b'lemma:-'
3.179689 O        b'word:-'
3.102251 O        b'lemma:1'
3.102251 O        b'word:1'
3.098519 Supp     b'lemma:pq'
3.098519 Supp     b'word:PQ'
3.093618 O        b'+2:lemma:\xc2\xb0c'
3.048431 Technique b'+2:lemma:ph5'
3.023838 O        b'postag:VBG'
2.983673 O        b'lemma:.'
2.983673 O        b'postag:.'
2.983673 O        b'word:.'
2.917328 Gtype    b'-2:lemma:genotype'
2.809547 Supp     b'-1:word:Cra'
2.771008 Supp     b'lemma:arginine'
2.769441 Gtype    b'lemma:wt'
2.740072 O        b'lemma:2'
2.740072 O        b'word:2'
2.714048 O        b'lemma:3'
2.714048 O        b'word:3'
2.688068 O        b'+2:lemma:crp'
2.682182 Supp     b'+2:lemma:rifampicin'
2.672186 Gtype    b'-2:lemma:affyexp'
2.656883 Air      b'postag:RB'
2.629878 O        b'-1:lemma:lb'
2.624817 Substrain b'-2:lemma:substr'
2.605112 Med      b'lemma:MOPS'
2.605112 Med      b'word:MOPS'
2.572735 Supp     b'lemma:Iron'
2.572735 Supp     b'word:Iron'
2.572735 Supp     b'+1:word:Deficient'
2.572735 Supp     b'-2:lemma:Anaerobic'
2.536688 Supp     b'lemma:no3'
2.536688 Supp     b'word:NO3'
2.512632 Technique b'lemma:chipseq'
2.479043 Phase    b'lemma:mid-log'
2.479043 Phase    b'word:mid-log'
2.477346 O        b'-2:lemma:flagtag'
2.443993 Technique b'word:ChIP-exo'
2.430806 Supp     b'-2:lemma:media'
2.418657 Phase    b'postag:NN'
2.370814 O        b'lemma:with'
2.370814 O        b'word:with'
2.332667 Supp     b'lemma:glucose'
2.332667 Supp     b'word:glucose'
2.332116 O        b'postag::'
2.293918 Supp     b'+2:lemma:iptg'
2.291189 Air      b'lemma:aerobically'
2.291189 Air      b'word:aerobically'
2.251504 O        b'lemma:at'
2.226393 Gtype    b'+1:lemma:type'
2.226393 Gtype    b'+1:word:type'
2.215014 Gtype    b'-1:lemma:\xe2\x88\x86'
2.215014 Gtype    b'-1:word:\xe2\x88\x86'
2.210147 O        b'-2:lemma:medium'
2.200719 O        b'-1:postag:NNS'
2.184406 Med      b'+2:postag:CC'
2.168094 Gtype    b'-2:lemma:delta'
2.161004 O        b'-2:lemma:myc'
2.160844 Supp     b'lemma:2h'
2.160844 Supp     b'-1:lemma:additional'
2.160844 Supp     b'word:2h'
2.160844 Supp     b'-1:word:additional'
2.114127 O        b'word:A'
2.114031 Technique b'lemma:rna-seq'
2.099769 Gtype    b'lemma:\xe2\x88\x86'
2.099769 Gtype    b'word:\xe2\x88\x86'
2.082649 O        b'-1:word:tag'
2.068269 O        b'lemma:b'
2.068269 O        b'word:B'
2.064647 Gversion b'lemma:chip-seq'
2.063730 Air      b'postag:JJ'
2.054737 Supp     b'lemma:acetate'
2.054737 Supp     b'word:acetate'
2.052593 Med      b'+2:lemma:b2'
2.031061 Strain   b'lemma:k-12'
2.031061 Strain   b'word:K-12'
2.029437 O        b'-1:lemma:tag'
2.022554 O        b'+1:postag:RB'
2.005294 Technique b'word:ChIP-Seq'
1.987434 pH       b'+1:postag:CD'
1.981668 Gtype    b'lemma:pk4854'
1.981668 Gtype    b'word:PK4854'
1.966428 Gversion b'word:ChIP-Seq'
1.958429 Technique b'lemma:ChIP-exo'
1.953687 Supp     b'+1:lemma:\xc2\xb5m'
1.953687 Supp     b'+1:word:\xc2\xb5M'
1.939708 O        b'postag:IN'
1.903276 O        b'-1:word:Aerobic'
1.900695 O        b'lemma::'
1.900695 O        b'word::'
1.884180 Med      b'lemma:media'
1.884180 Med      b'word:media'
1.884110 Gtype    b'+2:lemma:glucose'
1.878393 Supp     b'lemma:nacl'
1.878393 Supp     b'word:NaCl'
1.875824 O        b'lemma:rpob'
1.875824 O        b'word:RpoB'
1.874317 Air      b'-1:lemma:ChIP-Seq'
1.874317 Air      b'-1:word:ChIP-Seq'
1.873158 O        b'lemma:chip'
1.863203 Air      b'-2:lemma:IP'
1.846661 Supp     b'+2:lemma:feso4'
1.838648 O        b'-2:lemma:='
1.815180 O        b'postag:VBN'
1.794994 Substrain b'lemma:mg1655'
1.794994 Substrain b'word:MG1655'
1.768740 Supp     b'-1:lemma:Cra'
1.768150 Temp     b'-1:word:sample'
1.765170 O        b'-1:word:Anaerobic'
1.748766 Phase    b'+2:lemma:o.d.'
1.733499 O        b'+1:word:WT'
1.729231 Temp     b'-1:lemma:sample'
1.718206 Air      b'lemma:aerobic'
1.712334 O        b'lemma:for'
1.703557 O        b'+1:lemma:wt'
1.700853 O        b'-1:lemma:ChIP-exo'
1.690079 O        b'-2:lemma:ChIP-Seq'
1.687676 O        b'word:OmpR'
1.653479 O        b'-1:lemma:0.3'
1.653479 O        b'-1:word:0.3'
1.649363 O        b'+1:word:ChIP-Seq'
1.637286 Air      b'-1:lemma:-'
1.637286 Air      b'-1:word:-'
1.637109 O        b'+1:lemma:od600'
1.637109 O        b'+1:word:OD600'
1.625283 Gtype    b'lemma:dfnr'
1.625283 Gtype    b'word:dFNR'
1.624344 Supp     b'lemma:iptg'
1.624344 Supp     b'word:IPTG'
1.623842 O        b'-2:lemma:overnight'
1.618879 Technique b'hUpper'
1.616497 Air      b'lemma:anaeroibc'
1.616497 Air      b'word:Anaeroibc'
1.606207 Technique b'lemma:rnaseq'
1.606207 Technique b'word:RNASeq'
1.605328 O        b'word:Lrp'
1.596097 O        b'lemma:Cra'
1.592809 Supp     b'lemma:rifampicin'
1.592809 Supp     b'word:rifampicin'
1.585804 O        b'lemma:rep2'
1.585804 O        b'word:rep2'
1.585804 O        b'lemma:rep1'
1.585804 O        b'word:rep1'
1.574195 Phase    b'lemma:stationary'
1.574195 Phase    b'word:stationary'
1.574195 Phase    b'lemma:exponential'
1.574195 Phase    b'word:exponential'
1.570050 Supp     b'lemma:Adenine'
1.570050 Supp     b'word:Adenine'
1.560169 Supp     b'-2:lemma:argr'
1.554038 O        b'lemma:harbor'
1.554038 O        b'word:harboring'
1.549589 Med      b'+2:lemma:b1'
1.539413 Supp     b'-2:lemma:purr'
1.537804 Supp     b'-2:lemma:induce'
1.533420 O        b'-1:lemma:type'
1.533420 O        b'-1:word:type'
1.531795 Gtype    b'postag:JJ'
1.514409 Supp     b'lemma:Leu'
1.514409 Supp     b'word:Leu'
1.514409 Supp     b'-2:lemma:Lrp'
1.510871 Supp     b'-2:lemma:for'
1.501532 Temp     b'-2:lemma:keep'
1.483606 Temp     b'lemma:\xc2\xb0c'
1.483606 Temp     b'word:\xc2\xb0C'
1.464975 O        b'+2:lemma:constant'
1.462076 Air      b'word:anaerobic'
1.461252 pH       b'lemma:ph5'
1.461252 pH       b'+1:lemma:.5'
1.461252 pH       b'word:pH5'
1.461252 pH       b'+1:word:.5'
1.460529 O        b'+1:lemma:fnr-8myc'
1.460529 O        b'+1:word:Fnr-8myc'
1.455877 O        b'-1:lemma:media'
1.455877 O        b'-1:word:media'
1.454275 Gtype    b'+1:postag::'
1.446366 Air      b'-1:lemma:co2'
1.446366 Air      b'-1:word:CO2'
1.443784 O        b'+1:lemma:pq'
1.443784 O        b'+1:word:PQ'
1.424377 O        b'lemma:\xcf\x8332'
1.424377 O        b'word:\xcf\x8332'
1.410168 O        b'-1:lemma:glucose'
1.410168 O        b'-1:word:glucose'
1.409044 Supp     b'-2:postag:VBG'
1.404996 Supp     b'+1:lemma:1'
1.404996 Supp     b'+1:word:1'
1.400607 Temp     b'+1:lemma:\xc2\xb0c'
1.400607 Temp     b'+1:word:\xc2\xb0C'
1.397881 Technique b'-1:lemma:_'
1.397881 Technique b'-1:word:_'
1.379323 Air      b'-2:lemma:fnr'
1.374207 Med      b'-2:lemma:\xc2\xb0c'
1.368225 O        b'lemma:genotype/variation'
1.368225 O        b'word:genotype/variation'
1.365973 Supp     b'+1:lemma:2'
1.365973 Supp     b'+1:word:2'
1.362118 Air      b'-2:lemma:0.3'
1.358760 Temp     b'lemma:43'
1.358760 Temp     b'word:43'
1.347414 O        b'-1:lemma:anaerobic'
1.344369 Med      b'lemma:m63'
1.344369 Med      b'word:M63'
1.343925 O        b'+1:postag:NNP'
1.336464 O        b'+1:lemma:mid-log'
1.336464 O        b'+1:word:mid-log'
1.335640 O        b'-1:word:ChIP-exo'
1.334570 OD       b'lemma:0.3'
1.334570 OD       b'word:0.3'
1.332505 Supp     b'-1:lemma:+'
1.332505 Supp     b'-1:word:+'
1.331035 Gtype    b'-1:postag:VBP'
1.330991 O        b'-2:lemma:~'
1.324614 Gversion b'lemma:asm584v2'
1.324614 Gversion b'word:ASM584v2'
1.322070 O        b'+2:lemma:_'
1.312337 Supp     b'lemma:fructose'
1.312337 Supp     b'word:fructose'
1.305447 Phase    b'-2:lemma:until'
1.299812 Med      b'lemma:medium'
1.299812 Med      b'word:medium'
1.288858 O        b'lemma:ompr'
1.281193 Substrain b'+1:lemma:phtpg'
1.281193 Substrain b'+1:word:PhtpG'
1.277194 Vess     b'lemma:flask'
1.277194 Vess     b'-1:lemma:warm'
1.277194 Vess     b'word:flask'
1.277194 Vess     b'-1:word:warmed'
1.277194 Vess     b'-2:lemma:pre'
1.277194 Vess     b'+2:lemma:43'
1.273042 Supp     b'-1:postag:CC'
1.273010 Supp     b'-1:word:OmpR'
1.269853 Gversion b'-2:lemma:build'
1.268032 O        b'lemma:culture'
1.262328 O        b'word:for'
1.256809 O        b'+2:lemma:chipseq'
1.253214 Supp     b'-1:postag:CD'
1.252493 O        b'-1:lemma:\xc2\xb0c'
1.252493 O        b'-1:word:\xc2\xb0C'
1.248528 Supp     b'-2:lemma:20'
1.245985 Temp     b'lemma:37'
1.245985 Temp     b'word:37'
1.245230 O        b'lemma:a'
1.239341 O        b'lemma:chip-fnr'
1.239341 O        b'word:chip-Fnr'
1.239341 O        b'+2:lemma:fnr8myc'
1.233315 Temp     b'-1:lemma:\xcf\x8332'
1.233315 Temp     b'-1:word:\xcf\x8332'
1.232548 Technique b'-2:lemma:wt'
1.228495 Med      b'+1:lemma:0.4'
1.228495 Med      b'+1:word:0.4'
1.227679 O        b'lemma:purr'
1.227679 O        b'word:PurR'
1.223173 Anti     b'hGreek'
1.217658 Anti     b'-2:lemma:polymerase'
1.212122 O        b'+2:postag:JJ'
1.211429 O        b'word:C'
1.189197 Temp     b'-1:lemma:37'
1.189197 Temp     b'-1:word:37'
1.181276 O        b'lemma:CEL'
1.181276 O        b'word:CEL'
1.181190 Gtype    b'-1:lemma:nsrr'
1.181190 Gtype    b'+1:lemma:flagtag'
1.181190 Gtype    b'-1:word:NsrR'
1.181190 Gtype    b'+1:word:Flagtag'
1.180462 O        b'-2:lemma:37'
1.179401 O        b'lemma:from'
1.179401 O        b'word:from'
1.175806 Substrain b'lemma:mg1655star'
1.175806 Substrain b'word:MG1655star'
1.173281 Anti     b'+1:lemma:antibody'
1.173281 Anti     b'+1:word:antibody'
1.163960 Gversion b'lemma:u00096'
1.163960 Gversion b'+1:lemma:.2'
1.163960 Gversion b'word:U00096'
1.163960 Gversion b'+1:word:.2'
1.156674 Temp     b'-2:lemma:\xcf\x8332'
1.152536 Gtype    b'lemma:arca8myc'
1.152536 Gtype    b'word:ArcA8myc'
1.152536 Gtype    b'-2:lemma:chip-arca'
1.149095 O        b'+1:lemma:250'
1.149095 O        b'+1:word:250'
1.148011 Supp     b'-2:lemma:supplement'
1.147478 Supp     b'-2:lemma:agent'
1.136867 Gtype    b'lemma:deltaseqa'
1.136867 Gtype    b'-1:lemma:old'
1.136867 Gtype    b'word:deltaSeqA'
1.136867 Gtype    b'-1:word:old'
1.136867 Gtype    b'-2:lemma:seqa'
1.134006 Technique b'-1:lemma:input'
1.134006 Technique b'-1:word:Input'
1.127060 Supp     b'-2:lemma:pahse'
1.125898 O        b'+1:lemma:rifampicin'
1.125898 O        b'+1:word:rifampicin'
1.125150 O        b'-1:lemma:mg1655'
1.125150 O        b'-1:word:MG1655'
1.124198 O        b'lemma:argr'
1.124198 O        b'word:ArgR'
1.124087 O        b'lemma:trpr'
1.124087 O        b'word:TrpR'
1.124025 Temp     b'-1:lemma:43'
1.124025 Temp     b'-1:word:43'
1.123724 Gtype    b'-2:lemma:-rcb-'
1.121280 Gtype    b'hUpper'
1.120652 Supp     b'lemma:Fe'
1.120652 Supp     b'word:Fe'
1.113958 Gtype    b'lemma:\xce\xb4fur'
1.113958 Gtype    b'word:\xce\x94fur'
1.113764 OD       b'lemma:od450'
1.113764 OD       b'word:OD450'
1.113764 OD       b'-1:word:At'
1.112067 Supp     b'-1:lemma:with'
1.112067 Supp     b'-1:word:with'
1.104154 Med      b'-1:word:ml'
1.101703 Med      b'-1:lemma:ml'
1.094170 Supp     b'-1:postag:IN'
1.093522 O        b'+1:lemma:0.2'
1.093522 O        b'+1:word:0.2'
1.089689 Air      b'+2:postag:CD'
1.087827 Gversion b'-2:postag:VB'
1.077127 Gversion b'lemma:000913'
1.077127 Gversion b'word:000913'
1.077127 Gversion b'-2:lemma:nc'
1.074236 Supp     b'postag:NNP'
1.072695 Agit     b'lemma:rpm'
1.072695 Agit     b'word:rpm'
1.071498 Med      b'-2:postag:JJ'
1.070502 Supp     b'-2:lemma:10'
1.066178 O        b'lemma:chip-arca'
1.066178 O        b'word:chip-ArcA'
1.066178 O        b'+2:lemma:arca8myc'
1.057723 OD       b'+2:lemma:0.3'
1.056072 pH       b'lemma:5.5'
1.056072 pH       b'word:5.5'
1.052784 Agit     b'-1:lemma:250'
1.052784 Agit     b'-1:word:250'
1.051484 O        b'lemma:soxr'
1.051484 O        b'word:SoxR'
1.051484 O        b'lemma:soxs'
1.051484 O        b'word:SoxS'
1.050155 Supp     b'symb'
1.050129 O        b'lemma:affyexp'
1.050129 O        b'word:affyexp'
1.045209 Gversion b'lemma:nc'
1.045209 Gversion b'word:NC'
1.045209 Gversion b'+2:lemma:000913'
1.043873 Substrain b'+2:lemma::'
1.042563 O        b'+1:lemma:coli'
1.042563 O        b'+1:word:coli'
1.027272 O        b'-2:lemma:min'
1.026215 O        b'isLower'
1.019346 O        b'symb'
1.017428 Gtype    b'lemma:wild-type'
1.004151 Technique b'-2:postag:NNP'
1.002497 Med      b'lemma:LB'
1.000897 O        b'-1:lemma:wt'
0.997698 Air      b'-2:postag:CD'
0.993012 Supp     b'+2:lemma:add'
0.992754 Strain   b'+1:lemma:substr'
0.992754 Strain   b'+1:word:substr'
0.992754 Strain   b'-2:lemma:str'
0.991479 Temp     b'-2:postag:VBD'
0.989199 Gtype    b'-1:postag:VBG'
0.986135 Supp     b'+1:lemma:_'
0.986135 Supp     b'+1:word:_'
0.982361 Technique b'hLower'
0.970677 Supp     b'+1:lemma:Deficient'
0.969758 O        b'-1:lemma:into'
0.969758 O        b'-1:word:into'
0.965121 Med      b'postag:NNP'
0.965068 Gversion b'lemma:.2'
0.965068 Gversion b'-1:lemma:u00096'
0.965068 Gversion b'word:.2'
0.965068 Gversion b'-1:word:U00096'
0.964978 O        b'postag:VBD'
0.959941 Gtype    b'-2:postag:JJ'
0.958792 Gtype    b'+2:postag::'
0.953016 OD       b'postag:CD'
0.949789 Air      b'+2:lemma:%'
0.948069 Supp     b'+2:lemma:A'
0.944187 O        b'-2:lemma:fructose'
0.940981 OD       b'+1:lemma:of'
0.940981 OD       b'+1:word:of'
0.935862 Agit     b'+1:lemma:rpm'
0.935862 Agit     b'+1:word:rpm'
0.932117 Supp     b'-2:lemma:trpr'
0.928993 Air      b'-2:lemma:cm20'
0.928874 Vess     b'-1:postag:VBN'
0.928837 Supp     b'-1:lemma:_'
0.928837 Supp     b'-1:word:_'
0.926723 Supp     b'lemma:dpd'
0.926723 Supp     b'word:DPD'
0.921350 Air      b'-2:lemma:%'
0.917282 Med      b'+1:lemma:-lrb-'
0.917282 Med      b'+1:word:-LRB-'
0.911474 Air      b'-2:lemma:nh4cl'
0.909989 Supp     b'+1:word:was'
0.907667 O        b'-1:lemma:antibody'
0.907667 O        b'-1:word:antibody'
0.907581 Agit     b'+2:lemma:at'
0.906818 Supp     b'+2:lemma:-lrb-'
0.905672 O        b'+1:word:were'
0.899024 pH       b'-1:postag:NN'
0.897841 Air      b'-1:postag:CD'
0.895226 Med      b'isUpper'
0.894504 Supp     b'lemma:glutamine'
0.894504 Supp     b'-1:lemma:2g/l'
0.894504 Supp     b'word:glutamine'
0.894504 Supp     b'-1:word:2g/L'
0.893885 O        b'-2:lemma:co2'
0.889259 O        b'word:GadX'
0.888564 O        b'lemma:additional'
0.888564 O        b'+1:lemma:2h'
0.888564 O        b'word:additional'
0.888564 O        b'+1:word:2h'
0.887478 O        b'lemma:ml'
0.886976 Anti     b'+2:lemma:antibody'
0.885278 Supp     b'postag:NN'
0.883465 Substrain b'-1:lemma:.'
0.883465 Substrain b'-1:postag:.'
0.883465 Substrain b'-1:word:.'
0.882207 Gtype    b'hLower'
0.881266 Supp     b'-1:lemma:vol'
0.881266 Supp     b'-1:word:vol'
0.881266 Supp     b'-2:lemma:1/100'
0.881266 Supp     b'+2:lemma:1m'
0.877937 Agit     b'lemma:250'
0.877937 Agit     b'word:250'
0.877863 Supp     b'+1:word:hours'
0.876260 Supp     b'+2:postag:-LRB-'
0.875719 Vess     b'+1:lemma:at'
0.875719 Vess     b'+1:word:at'
0.875538 Gtype    b'+2:postag:NN'
0.874861 OD       b'+1:postag:IN'
0.869559 Gtype    b'-1:lemma:ptac'
0.869559 Gtype    b'-1:word:Ptac'
0.867713 O        b'lemma:gadx'
0.866784 Gtype    b'-2:lemma:dna'
0.863637 O        b'+1:lemma:\xe2\x88\x86'
0.863637 O        b'+1:word:\xe2\x88\x86'
0.857516 O        b'lemma:or'
0.857516 O        b'word:or'
0.850840 Med      b'+1:lemma:2.0'
0.850840 Med      b'+1:word:2.0'
0.850487 O        b'-1:word:WT'
0.840231 O        b'+2:postag:VB'
0.836379 O        b'+1:postag:VBZ'
0.835536 Phase    b'-1:lemma:mid-log'
0.835536 Phase    b'-1:word:mid-log'
0.831327 O        b'-2:lemma:ml'
0.830470 Med      b'+1:lemma:+'
0.830470 Med      b'+1:word:+'
0.829820 Gtype    b'-2:postag::'
0.829649 Air      b'+1:lemma:%'
0.829649 Air      b'+1:word:%'
0.826358 OD       b'-1:lemma:at'
0.826146 Agit     b'-2:lemma:aerobically'
0.825923 O        b'word:ml'
0.824455 O        b'-2:lemma:reach'
0.824099 Gtype    b'lemma:fnr8myc'
0.824099 Gtype    b'word:Fnr8myc'
0.824099 Gtype    b'-2:lemma:chip-fnr'
0.821368 Technique b'+1:word:ChIP-exo'
0.818898 O        b'-1:postag:NN'
0.817564 Gtype    b'-1:lemma:rpob'
0.817564 Gtype    b'-1:word:RpoB'
0.816426 O        b'lemma:-lrb-'
0.816426 O        b'word:-LRB-'
0.815727 Gtype    b'lemma:ptac'
0.815727 Gtype    b'word:Ptac'
0.815170 Gtype    b'lemma:crp'
0.815170 Gtype    b'word:crp'
0.806691 pH       b'lemma:.5'
0.806691 pH       b'-1:lemma:ph5'
0.806691 pH       b'word:.5'
0.806691 pH       b'-1:word:pH5'
0.805671 O        b'+2:lemma:wt'
0.805130 Technique b'-1:lemma:chip-exo'
0.803551 Substrain b'+2:postag::'
0.803218 Air      b'lemma:%'
0.803218 Air      b'word:%'


Top negative:
-0.008646 O        b'+1:word:O2'
-0.008699 O        b'-1:lemma:0.2'
-0.008699 O        b'-1:word:0.2'
-0.009782 O        b'+1:lemma:~'
-0.009782 O        b'+1:word:~'
-0.009958 Supp     b'lemma:vol'
-0.009958 Supp     b'-1:lemma:1/100'
-0.009958 Supp     b'word:vol'
-0.009958 Supp     b'-1:word:1/100'
-0.011712 Air      b'-2:postag:-RRB-'
-0.012108 O        b'-1:lemma:at'
-0.012208 Supp     b'+2:lemma:mm'
-0.012456 O        b'+1:lemma:for'
-0.012772 Gversion b'isUpper'
-0.016360 O        b'+1:lemma:0.3'
-0.016360 O        b'+1:word:0.3'
-0.016830 O        b'+1:lemma:glucose'
-0.016830 O        b'+1:word:glucose'
-0.016918 Supp     b'+2:lemma:final'
-0.017511 Supp     b'+1:word:were'
-0.018298 Supp     b'-1:lemma:.'
-0.018298 Supp     b'-1:postag:.'
-0.018298 Supp     b'-1:word:.'
-0.018305 Agit     b'hLower'
-0.018886 O        b'+1:lemma:of'
-0.018886 O        b'+1:word:of'
-0.019639 Supp     b'+1:lemma:final'
-0.019639 Supp     b'+1:word:final'
-0.020451 O        b'+2:lemma:95'
-0.021157 Supp     b'-2:postag:NN'
-0.021975 O        b'+1:word:a'
-0.022119 O        b'+1:lemma:300'
-0.022119 O        b'+1:word:300'
-0.022791 Temp     b'-1:postag:IN'
-0.023080 O        b'+1:lemma:min'
-0.023080 O        b'+1:word:min'
-0.023144 Technique b'+2:postag:CD'
-0.023351 Phase    b'+1:postag:RB'
-0.024240 Supp     b'+2:lemma:glucose'
-0.026760 O        b'-1:lemma:-lrb-'
-0.026760 O        b'-1:word:-LRB-'
-0.026861 Supp     b'+1:postag:-RRB-'
-0.027046 Phase    b'+2:lemma:at'
-0.027588 O        b'-2:lemma:phase'
-0.027923 O        b'lemma:fructose'
-0.027923 O        b'word:fructose'
-0.029403 Supp     b'lemma:.'
-0.029403 Supp     b'postag:.'
-0.029403 Supp     b'word:.'
-0.029748 O        b'+2:postag:CC'
-0.031034 Gtype    b'+1:lemma:crp'
-0.031034 Gtype    b'+1:word:crp'
-0.032322 O        b'-1:lemma:0.1'
-0.032322 O        b'-1:word:0.1'
-0.034429 Air      b'postag:CD'
-0.035300 O        b'+1:word:for'
-0.035555 OD       b'lemma:='
-0.035555 OD       b'word:='
-0.035640 O        b'+1:postag:DT'
-0.038324 Supp     b'+1:lemma:dpd'
-0.038324 Supp     b'+1:word:DPD'
-0.042976 O        b'-2:lemma:at'
-0.044016 O        b'-1:lemma:~'
-0.044016 O        b'-1:word:~'
-0.045443 O        b'postag:JJ'
-0.046076 O        b'lemma:ph'
-0.046076 O        b'word:pH'
-0.046792 Supp     b'-2:postag:VBD'
-0.047067 Supp     b'-1:lemma:10'
-0.047067 Supp     b'-1:word:10'
-0.048557 O        b'+1:lemma:m'
-0.048557 O        b'+1:word:M'
-0.048558 O        b'lemma:m9'
-0.048558 O        b'word:M9'
-0.051441 OD       b'lemma:~'
-0.051441 OD       b'word:~'
-0.053478 Med      b'-1:postag:IN'
-0.054549 O        b'+2:lemma:10'
-0.056126 Vess     b'symb'
-0.056349 O        b'+1:lemma:95'
-0.056349 O        b'+1:word:95'
-0.057213 Air      b'-1:postag:CC'
-0.058127 Supp     b'postag::'
-0.059071 O        b'+1:lemma:-rrb-'
-0.059071 O        b'+1:word:-RRB-'
-0.061177 O        b'lemma:methanol'
-0.061177 O        b'word:methanol'
-0.061177 O        b'-2:lemma:dissolve'
-0.063031 O        b'lemma:;'
-0.063031 O        b'-1:lemma:7.6'
-0.063031 O        b'word:;'
-0.063031 O        b'-1:word:7.6'
-0.063611 O        b'+1:lemma:gadx'
-0.063990 O        b'-2:lemma:-lrb-'
-0.065044 O        b'-2:lemma:25'
-0.066445 O        b'-1:lemma:rifampicin'
-0.066445 O        b'-1:word:rifampicin'
-0.068852 O        b'-2:lemma:g/l'
-0.069381 Supp     b'-2:lemma:;'
-0.070820 Supp     b'-2:lemma:0.2'
-0.071375 O        b'-2:lemma:0.1'
-0.071831 O        b'+2:lemma:fecl2'
-0.072298 O        b'+2:lemma:n2'
-0.072522 Gtype    b'-1:lemma:mg1655'
-0.072522 Gtype    b'-1:word:MG1655'
-0.073187 O        b'+1:lemma:contain'
-0.073187 O        b'+1:word:containing'
-0.073321 Temp     b'postag:CD'
-0.073565 Temp     b'symb'
-0.075437 O        b'-1:lemma:mid-log'
-0.075437 O        b'-1:word:mid-log'
-0.076052 Supp     b'postag:IN'
-0.078406 O        b'+1:lemma:dissolve'
-0.078406 O        b'+1:word:dissolved'
-0.079958 O        b'lemma:o2'
-0.079958 O        b'word:O2'
-0.080661 O        b'+2:lemma:follow'
-0.081017 Air      b'-2:postag:VBD'
-0.081071 Supp     b'hLower'
-0.081183 Supp     b'-2:lemma:-lrb-'
-0.081953 O        b'+1:lemma:sample'
-0.082280 O        b'-1:lemma:phosphate'
-0.082280 O        b'-1:word:phosphate'
-0.083782 O        b'-1:postag:-LRB-'
-0.086292 O        b'-2:lemma:-rrb-'
-0.086332 O        b'+1:lemma:.'
-0.086332 O        b'+1:postag:.'
-0.086332 O        b'+1:word:.'
-0.086394 O        b'-2:lemma:stir'
-0.086715 O        b'-2:lemma:to'
-0.086715 O        b'-2:postag:TO'
-0.086908 O        b'-2:lemma:cell'
-0.086929 O        b'lemma:dpd'
-0.086929 O        b'word:DPD'
-0.087948 O        b'-1:lemma:o2'
-0.087948 O        b'-1:word:O2'
-0.089113 O        b'+2:lemma:0.3'
-0.089648 O        b'+1:lemma:5'
-0.089648 O        b'+1:word:5'
-0.089696 O        b'-2:lemma:of'
-0.090360 O        b'-1:lemma:.'
-0.090360 O        b'-1:postag:.'
-0.090360 O        b'-1:word:.'
-0.090397 O        b'+1:lemma:ph'
-0.090397 O        b'+1:word:pH'
-0.090940 O        b'-1:lemma:contain'
-0.090940 O        b'-1:word:containing'
-0.091180 Temp     b'-2:postag:IN'
-0.091256 Med      b'-1:postag:CD'
-0.093681 Supp     b'-1:lemma:dpd'
-0.093681 Supp     b'-1:word:DPD'
-0.093769 Supp     b'isNumber'
-0.095703 O        b'lemma:m63'
-0.095703 O        b'word:M63'
-0.096732 O        b'-1:lemma:sodium'
-0.096732 O        b'-1:word:Sodium'
-0.096732 O        b'+2:lemma:1/100'
-0.096888 Supp     b'hUpper'
-0.097275 Supp     b'-2:postag:-LRB-'
-0.099153 Supp     b'+1:postag::'
-0.099416 Air      b'-2:postag:CC'
-0.101778 Gtype    b'-2:postag:NNP'
-0.103582 O        b'+1:lemma:mm'
-0.103582 O        b'+1:word:mM'
-0.103814 Med      b'hLower'
-0.105203 OD       b'+1:lemma:0.4'
-0.105203 OD       b'+1:word:0.4'
-0.105303 Med      b'-1:word:LB'
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-0.106375 O        b'lemma:nacl'
-0.106375 O        b'word:NaCl'
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-0.108561 Phase    b'+2:postag:IN'
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-0.109764 O        b'-1:lemma:final'
-0.109764 O        b'-1:word:final'
-0.110143 O        b'-2:postag:SYM'
-0.116091 Med      b'postag:CD'
-0.117905 OD       b'-2:postag:DT'
-0.120158 O        b'-1:lemma:mm'
-0.120158 O        b'-1:word:mM'
-0.121104 O        b'-1:lemma:rna'
-0.121104 O        b'-1:word:RNA'
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-0.122772 O        b'word:0.2'
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-0.132982 O        b'+1:word:mg/mL'
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-0.142822 O        b'+2:lemma:ph'
-0.144023 Supp     b'+2:lemma:dpd'
-0.144067 Air      b'-1:word:grown'
-0.144798 O        b'-2:lemma:100'
-0.147150 O        b'+1:lemma:nitrate'
-0.147150 O        b'+1:word:nitrate'
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-0.155851 O        b'+1:word:1/100'
-0.155851 O        b'-2:lemma:sodium'
-0.155851 O        b'+2:lemma:vol'
-0.158709 Med      b'+1:postag:NN'
-0.160049 Supp     b'-1:postag:VBN'
-0.161459 Med      b'-1:postag:NN'
-0.161732 O        b'+2:lemma:nitrate'
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-0.161951 O        b'lemma:dissolve'
-0.161951 O        b'word:dissolved'
-0.161951 O        b'+2:lemma:methanol'
-0.162223 Temp     b'+2:postag:JJ'
-0.162897 O        b'+1:lemma:2.0'
-0.162897 O        b'+1:word:2.0'
-0.163740 O        b'lemma:fecl2'
-0.163740 O        b'word:FeCl2'
-0.164821 O        b'-2:lemma:50'
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