********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.0025592519098406137, 'c2': 0.024317460731590163}
best CV score:0.8200306160186037
model size: 0.21M

Flat F1: 0.8091939795375628
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.595     0.568     0.581        88
       Anti      0.900     0.692     0.783        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.952     0.769     0.851        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.851     0.838     0.844       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.855     0.773     0.809       484


Top likely transitions:
Temp   -> Temp    5.053750
Supp   -> Supp    5.042978
Gtype  -> Gtype   4.715110
Anti   -> Anti    4.535520
Med    -> Med     4.355140
OD     -> OD      4.330127
Air    -> Air     4.255270
O      -> O       4.228400
Phase  -> Phase   3.983959
Gversion -> Gversion 3.699394
pH     -> pH      2.762778
Technique -> Technique 2.749804
Agit   -> Agit    1.839560
Substrain -> Gtype   1.396779
Technique -> Air     0.838412
O      -> Technique 0.662321
O      -> Gtype   0.626128
Gtype  -> Supp    0.566502
O      -> Supp    0.362928
Gtype  -> pH      0.321622
Gtype  -> Air     0.260509
O      -> Strain  0.201712
Temp   -> O       0.200094
Strain -> O       0.175075
O      -> pH      0.140796
Air    -> O       0.081595
Phase  -> Air     0.036698
O      -> Vess    0.008167
Agit   -> Temp    -0.000000
Temp   -> Strain  -0.000003
Anti   -> Agit    -0.000006
Substrain -> Strain  -0.000149
Anti   -> Substrain -0.000194
Phase  -> Substrain -0.000221
Vess   -> Temp    -0.001109
pH     -> O       -0.001535
Air    -> Vess    -0.002484
pH     -> Phase   -0.003310
Vess   -> Med     -0.007969
OD     -> Vess    -0.009303
Vess   -> O       -0.010852
pH     -> Anti    -0.012002
Temp   -> Agit    -0.012969
Air    -> Strain  -0.013954
Strain -> Med     -0.014613
Temp   -> Phase   -0.016041
Phase  -> Strain  -0.016884
Temp   -> Gversion -0.018288
O      -> Temp    -0.019390
Substrain -> pH      -0.021017
Phase  -> pH      -0.021672
Supp   -> Strain  -0.022388
Anti   -> Vess    -0.023052
Temp   -> Anti    -0.023168
Technique -> Strain  -0.025081
Vess   -> Air     -0.026150
pH     -> Technique -0.027706
Substrain -> Technique -0.027714
Gversion -> Agit    -0.028949
OD     -> Anti    -0.031877
Strain -> pH      -0.032569
Med    -> Strain  -0.033598
Vess   -> Supp    -0.037081
Gtype  -> Strain  -0.037206
Strain -> Air     -0.037437
Agit   -> Vess    -0.038797
Agit   -> Gtype   -0.041050
Med    -> Vess    -0.044852
OD     -> Phase   -0.053879
Technique -> Substrain -0.054370
Strain -> Phase   -0.055921
Strain -> OD      -0.057380
Anti   -> Gversion -0.058459
Gversion -> pH      -0.059149
Phase  -> Gversion -0.060021
Agit   -> Med     -0.061457
Substrain -> OD      -0.063577
Gversion -> Temp    -0.064116
Air    -> Substrain -0.065711
Gversion -> Anti    -0.065885
pH     -> Gtype   -0.065968
Agit   -> OD      -0.066961
Supp   -> O       -0.067631
OD     -> Strain  -0.069968
Air    -> Anti    -0.070131
Technique -> Phase   -0.071526
Air    -> pH      -0.072247
Supp   -> Substrain -0.072485
Gtype  -> Vess    -0.076480
Substrain -> Air     -0.078153
Substrain -> Med     -0.081957
Med    -> Agit    -0.083638
OD     -> Gversion -0.089629
Temp   -> Technique -0.096276
pH     -> Med     -0.098622
Gversion -> Phase   -0.108282
pH     -> Gversion -0.109452
O      -> Anti    -0.109774
Technique -> Anti    -0.113133
Supp   -> Agit    -0.116750
Strain -> Supp    -0.120730
Med    -> Anti    -0.121178
pH     -> OD      -0.126321
pH     -> Agit    -0.129934
Gtype  -> Agit    -0.133017
O      -> Agit    -0.133769
Med    -> Gversion -0.140321
Substrain -> Supp    -0.142485
pH     -> Temp    -0.151451
Supp   -> Vess    -0.159609
Med    -> Phase   -0.161330
OD     -> Agit    -0.163305
Gversion -> OD      -0.164476
Agit   -> O       -0.169642
OD     -> pH      -0.174743
Technique -> Temp    -0.181229
Gtype  -> Substrain -0.182767
Air    -> Gversion -0.186505
Temp   -> Gtype   -0.188012
Anti   -> pH      -0.191377
pH     -> Air     -0.191441
Gversion -> Med     -0.192548
Anti   -> Air     -0.195081
Agit   -> Technique -0.198659
Technique -> Agit    -0.206031
OD     -> Gtype   -0.212677
Strain -> Gtype   -0.212827
Air    -> Gtype   -0.216775
Temp   -> OD      -0.218589
Med    -> OD      -0.228744
Anti   -> OD      -0.229909
Phase  -> Temp    -0.233106
Temp   -> Supp    -0.239293
Med    -> Gtype   -0.245740
Gversion -> Technique -0.246437
Phase  -> Gtype   -0.256345
Gversion -> Gtype   -0.257280
Anti   -> Technique -0.258865
Med    -> pH      -0.261594
O      -> Substrain -0.274132
Temp   -> Air     -0.279900
Gversion -> Air     -0.296662
Agit   -> Supp    -0.302882
Phase  -> Anti    -0.326247
Supp   -> pH      -0.332670
Med    -> Air     -0.334040
Med    -> Temp    -0.352897
Anti   -> Phase   -0.362206
Phase  -> Supp    -0.377313
Phase  -> O       -0.382681
Air    -> Technique -0.383793
Supp   -> Temp    -0.390853
pH     -> Supp    -0.397690
OD     -> Med     -0.398607
OD     -> Technique -0.403581
Supp   -> Technique -0.409249
Technique -> Gversion -0.410382
Supp   -> Phase   -0.415016
O      -> Gversion -0.427050
Gversion -> Supp    -0.430136
Supp   -> Anti    -0.431450
OD     -> O       -0.436976
O      -> Phase   -0.439566
Anti   -> O       -0.440466
Air    -> OD      -0.448782
Supp   -> Gversion -0.454561
Technique -> Med     -0.460588
Supp   -> Air     -0.462384
Supp   -> Gtype   -0.476813
Supp   -> OD      -0.485021
Technique -> Supp    -0.492677
Gtype  -> Gversion -0.497493
Agit   -> Air     -0.498809
Anti   -> Gtype   -0.498956
Gtype  -> OD      -0.504620
Gtype  -> Temp    -0.534138
Gtype  -> Technique -0.557720
Med    -> Technique -0.574397
Air    -> Temp    -0.595937
Anti   -> Supp    -0.600768
Gversion -> O       -0.605178
OD     -> Temp    -0.628181
Anti   -> Med     -0.663971
OD     -> Supp    -0.664307
Phase  -> Technique -0.711326
Med    -> O       -0.754561
Phase  -> Med     -0.759714
O      -> OD      -0.765412
Gtype  -> Phase   -0.769295
Air    -> Med     -0.769639
Air    -> Supp    -0.774267
Phase  -> OD      -0.812907
Gtype  -> Anti    -0.889947
Technique -> OD      -0.907367
Air    -> Phase   -0.919013
Technique -> Gtype   -0.947206
Air    -> Agit    -0.990986
OD     -> Air     -1.018324
Gtype  -> Med     -1.024997
Temp   -> Med     -1.063787
Gtype  -> O       -1.093815
Anti   -> Temp    -1.105725
Technique -> O       -1.189633
Substrain -> O       -1.428743
O      -> Air     -1.452621
O      -> Med     -1.554403
Technique -> pH      -1.675631
Med    -> Supp    -2.099029
Supp   -> Med     -2.179216


Top unlikely transitions:
Temp   -> Temp    5.053750
Supp   -> Supp    5.042978
Gtype  -> Gtype   4.715110
Anti   -> Anti    4.535520
Med    -> Med     4.355140
OD     -> OD      4.330127
Air    -> Air     4.255270
O      -> O       4.228400
Phase  -> Phase   3.983959
Gversion -> Gversion 3.699394
pH     -> pH      2.762778
Technique -> Technique 2.749804
Agit   -> Agit    1.839560
Substrain -> Gtype   1.396779
Technique -> Air     0.838412
O      -> Technique 0.662321
O      -> Gtype   0.626128
Gtype  -> Supp    0.566502
O      -> Supp    0.362928
Gtype  -> pH      0.321622
Gtype  -> Air     0.260509
O      -> Strain  0.201712
Temp   -> O       0.200094
Strain -> O       0.175075
O      -> pH      0.140796
Air    -> O       0.081595
Phase  -> Air     0.036698
O      -> Vess    0.008167
Agit   -> Temp    -0.000000
Temp   -> Strain  -0.000003
Anti   -> Agit    -0.000006
Substrain -> Strain  -0.000149
Anti   -> Substrain -0.000194
Phase  -> Substrain -0.000221
Vess   -> Temp    -0.001109
pH     -> O       -0.001535
Air    -> Vess    -0.002484
pH     -> Phase   -0.003310
Vess   -> Med     -0.007969
OD     -> Vess    -0.009303
Vess   -> O       -0.010852
pH     -> Anti    -0.012002
Temp   -> Agit    -0.012969
Air    -> Strain  -0.013954
Strain -> Med     -0.014613
Temp   -> Phase   -0.016041
Phase  -> Strain  -0.016884
Temp   -> Gversion -0.018288
O      -> Temp    -0.019390
Substrain -> pH      -0.021017
Phase  -> pH      -0.021672
Supp   -> Strain  -0.022388
Anti   -> Vess    -0.023052
Temp   -> Anti    -0.023168
Technique -> Strain  -0.025081
Vess   -> Air     -0.026150
pH     -> Technique -0.027706
Substrain -> Technique -0.027714
Gversion -> Agit    -0.028949
OD     -> Anti    -0.031877
Strain -> pH      -0.032569
Med    -> Strain  -0.033598
Vess   -> Supp    -0.037081
Gtype  -> Strain  -0.037206
Strain -> Air     -0.037437
Agit   -> Vess    -0.038797
Agit   -> Gtype   -0.041050
Med    -> Vess    -0.044852
OD     -> Phase   -0.053879
Technique -> Substrain -0.054370
Strain -> Phase   -0.055921
Strain -> OD      -0.057380
Anti   -> Gversion -0.058459
Gversion -> pH      -0.059149
Phase  -> Gversion -0.060021
Agit   -> Med     -0.061457
Substrain -> OD      -0.063577
Gversion -> Temp    -0.064116
Air    -> Substrain -0.065711
Gversion -> Anti    -0.065885
pH     -> Gtype   -0.065968
Agit   -> OD      -0.066961
Supp   -> O       -0.067631
OD     -> Strain  -0.069968
Air    -> Anti    -0.070131
Technique -> Phase   -0.071526
Air    -> pH      -0.072247
Supp   -> Substrain -0.072485
Gtype  -> Vess    -0.076480
Substrain -> Air     -0.078153
Substrain -> Med     -0.081957
Med    -> Agit    -0.083638
OD     -> Gversion -0.089629
Temp   -> Technique -0.096276
pH     -> Med     -0.098622
Gversion -> Phase   -0.108282
pH     -> Gversion -0.109452
O      -> Anti    -0.109774
Technique -> Anti    -0.113133
Supp   -> Agit    -0.116750
Strain -> Supp    -0.120730
Med    -> Anti    -0.121178
pH     -> OD      -0.126321
pH     -> Agit    -0.129934
Gtype  -> Agit    -0.133017
O      -> Agit    -0.133769
Med    -> Gversion -0.140321
Substrain -> Supp    -0.142485
pH     -> Temp    -0.151451
Supp   -> Vess    -0.159609
Med    -> Phase   -0.161330
OD     -> Agit    -0.163305
Gversion -> OD      -0.164476
Agit   -> O       -0.169642
OD     -> pH      -0.174743
Technique -> Temp    -0.181229
Gtype  -> Substrain -0.182767
Air    -> Gversion -0.186505
Temp   -> Gtype   -0.188012
Anti   -> pH      -0.191377
pH     -> Air     -0.191441
Gversion -> Med     -0.192548
Anti   -> Air     -0.195081
Agit   -> Technique -0.198659
Technique -> Agit    -0.206031
OD     -> Gtype   -0.212677
Strain -> Gtype   -0.212827
Air    -> Gtype   -0.216775
Temp   -> OD      -0.218589
Med    -> OD      -0.228744
Anti   -> OD      -0.229909
Phase  -> Temp    -0.233106
Temp   -> Supp    -0.239293
Med    -> Gtype   -0.245740
Gversion -> Technique -0.246437
Phase  -> Gtype   -0.256345
Gversion -> Gtype   -0.257280
Anti   -> Technique -0.258865
Med    -> pH      -0.261594
O      -> Substrain -0.274132
Temp   -> Air     -0.279900
Gversion -> Air     -0.296662
Agit   -> Supp    -0.302882
Phase  -> Anti    -0.326247
Supp   -> pH      -0.332670
Med    -> Air     -0.334040
Med    -> Temp    -0.352897
Anti   -> Phase   -0.362206
Phase  -> Supp    -0.377313
Phase  -> O       -0.382681
Air    -> Technique -0.383793
Supp   -> Temp    -0.390853
pH     -> Supp    -0.397690
OD     -> Med     -0.398607
OD     -> Technique -0.403581
Supp   -> Technique -0.409249
Technique -> Gversion -0.410382
Supp   -> Phase   -0.415016
O      -> Gversion -0.427050
Gversion -> Supp    -0.430136
Supp   -> Anti    -0.431450
OD     -> O       -0.436976
O      -> Phase   -0.439566
Anti   -> O       -0.440466
Air    -> OD      -0.448782
Supp   -> Gversion -0.454561
Technique -> Med     -0.460588
Supp   -> Air     -0.462384
Supp   -> Gtype   -0.476813
Supp   -> OD      -0.485021
Technique -> Supp    -0.492677
Gtype  -> Gversion -0.497493
Agit   -> Air     -0.498809
Anti   -> Gtype   -0.498956
Gtype  -> OD      -0.504620
Gtype  -> Temp    -0.534138
Gtype  -> Technique -0.557720
Med    -> Technique -0.574397
Air    -> Temp    -0.595937
Anti   -> Supp    -0.600768
Gversion -> O       -0.605178
OD     -> Temp    -0.628181
Anti   -> Med     -0.663971
OD     -> Supp    -0.664307
Phase  -> Technique -0.711326
Med    -> O       -0.754561
Phase  -> Med     -0.759714
O      -> OD      -0.765412
Gtype  -> Phase   -0.769295
Air    -> Med     -0.769639
Air    -> Supp    -0.774267
Phase  -> OD      -0.812907
Gtype  -> Anti    -0.889947
Technique -> OD      -0.907367
Air    -> Phase   -0.919013
Technique -> Gtype   -0.947206
Air    -> Agit    -0.990986
OD     -> Air     -1.018324
Gtype  -> Med     -1.024997
Temp   -> Med     -1.063787
Gtype  -> O       -1.093815
Anti   -> Temp    -1.105725
Technique -> O       -1.189633
Substrain -> O       -1.428743
O      -> Air     -1.452621
O      -> Med     -1.554403
Technique -> pH      -1.675631
Med    -> Supp    -2.099029
Supp   -> Med     -2.179216


Top positive:
5.243981 O        b'lemma:_'
5.243981 O        b'word:_'
4.066859 Air      b'lemma:anaerobic'
3.694422 O        b'word:Cra'
3.615451 Gtype    b'word:WT'
3.447033 Gtype    b'hGreek'
3.383794 Gtype    b'lemma:wt'
3.206534 Supp     b'lemma:Iron'
3.206534 Supp     b'word:Iron'
3.206534 Supp     b'+1:word:Deficient'
3.202888 Technique b'word:ChIPSeq'
3.122016 Supp     b'lemma:pq'
3.122016 Supp     b'word:PQ'
3.032638 Supp     b'-1:word:Cra'
2.979490 Air      b'postag:RB'
2.979291 Phase    b'lemma:stationary'
2.979291 Phase    b'word:stationary'
2.979291 Phase    b'lemma:exponential'
2.979291 Phase    b'word:exponential'
2.953228 Supp     b'lemma:nh4cl'
2.945819 Air      b'word:Aerobic'
2.928043 Air      b'word:Anaerobic'
2.915530 Med      b'lemma:MOPS'
2.915530 Med      b'word:MOPS'
2.902974 O        b'lemma:Cra'
2.875653 Air      b'lemma:aerobically'
2.875653 Air      b'word:aerobically'
2.816814 Technique b'lemma:chipseq'
2.754554 O        b'postag:VBG'
2.695968 Supp     b'lemma:2h'
2.695968 Supp     b'-1:lemma:additional'
2.695968 Supp     b'word:2h'
2.695968 Supp     b'-1:word:additional'
2.681828 O        b'lemma:-'
2.681828 O        b'word:-'
2.663706 Supp     b'+1:lemma:\xc2\xb5m'
2.663706 Supp     b'+1:word:\xc2\xb5M'
2.558905 O        b'-1:lemma:lb'
2.557422 Technique b'word:ChIP-exo'
2.481978 Supp     b'lemma:glucose'
2.481978 Supp     b'word:glucose'
2.427969 Gversion b'lemma:asm584v2'
2.427969 Gversion b'word:ASM584v2'
2.419052 O        b'-1:lemma:tag'
2.398440 O        b'-1:word:tag'
2.376881 O        b'lemma:.'
2.376881 O        b'postag:.'
2.376881 O        b'word:.'
2.363986 Technique b'lemma:ChIP-exo'
2.299582 O        b'lemma:1'
2.299582 O        b'word:1'
2.287125 Supp     b'lemma:arginine'
2.284629 Gtype    b'lemma:arca8myc'
2.284629 Gtype    b'word:ArcA8myc'
2.273351 O        b'postag::'
2.252194 Strain   b'lemma:k-12'
2.252194 Strain   b'word:K-12'
2.243952 O        b'lemma:chip-arca'
2.243952 O        b'word:chip-ArcA'
2.213905 Med      b'word:LB'
2.213636 Phase    b'postag:NN'
2.207892 Med      b'lemma:LB'
2.199128 Gtype    b'-1:lemma:\xe2\x88\x86'
2.199128 Gtype    b'-1:word:\xe2\x88\x86'
2.195554 Supp     b'-1:lemma:Cra'
2.179589 O        b'+1:word:were'
2.178794 Gtype    b'lemma:type'
2.178794 Gtype    b'word:type'
2.171441 Air      b'lemma:aerobic'
2.170882 O        b'lemma:2'
2.170882 O        b'word:2'
2.139934 Phase    b'lemma:mid-log'
2.139934 Phase    b'word:mid-log'
2.126769 Gversion b'lemma:chip-seq'
2.108636 Gversion b'word:ChIP-Seq'
2.106210 O        b'+1:lemma:pq'
2.106210 O        b'+1:word:PQ'
2.100407 Supp     b'lemma:no3'
2.100407 Supp     b'word:NO3'
2.094344 O        b'lemma:chip-fnr'
2.094344 O        b'word:chip-Fnr'
2.082805 O        b'lemma:with'
2.082805 O        b'word:with'
2.075264 O        b'lemma:rep2'
2.075264 O        b'word:rep2'
2.075264 O        b'lemma:rep1'
2.075264 O        b'word:rep1'
2.071078 O        b'-1:lemma:0.3'
2.071078 O        b'-1:word:0.3'
2.068092 Vess     b'lemma:flask'
2.068092 Vess     b'-1:lemma:warm'
2.068092 Vess     b'word:flask'
2.068092 Vess     b'-1:word:warmed'
2.063985 Substrain b'lemma:mg1655'
2.063985 Substrain b'word:MG1655'
2.060745 O        b'lemma:at'
2.050489 Air      b'lemma:anaeroibc'
2.050489 Air      b'word:Anaeroibc'
2.044206 Air      b'postag:JJ'
2.036922 Supp     b'lemma:Fe'
2.036922 Supp     b'word:Fe'
2.027967 O        b'-1:word:Anaerobic'
2.017572 Anti     b'lemma:none'
2.017572 Anti     b'word:none'
2.015277 Gtype    b'+1:lemma:type'
2.015277 Gtype    b'+1:word:type'
2.014641 O        b'postag:IN'
2.012667 O        b'+1:postag:RB'
2.011892 Anti     b'lemma:\xcf\x8332'
2.011892 Anti     b'word:\xcf\x8332'
2.009025 O        b'lemma:3'
2.009025 O        b'word:3'
2.004284 O        b'lemma:b'
2.004284 O        b'word:B'
2.003891 Air      b'-1:lemma:-'
2.003891 Air      b'-1:word:-'
1.970342 Technique b'word:ChIP-Seq'
1.964986 Technique b'lemma:rnaseq'
1.964986 Technique b'word:RNASeq'
1.963947 Air      b'-1:lemma:ChIP-Seq'
1.963947 Air      b'-1:word:ChIP-Seq'
1.954738 Air      b'word:anaerobic'
1.947192 O        b'lemma:rpob'
1.947192 O        b'word:RpoB'
1.943087 Supp     b'lemma:nacl'
1.943087 Supp     b'word:NaCl'
1.920717 O        b'lemma:\xcf\x8332'
1.920717 O        b'word:\xcf\x8332'
1.920149 Supp     b'+1:lemma:Deficient'
1.911563 Gtype    b'lemma:wildtype'
1.901367 O        b'word:A'
1.888284 Gtype    b'lemma:pk4854'
1.888284 Gtype    b'word:PK4854'
1.881783 Gtype    b'lemma:delta-fnr'
1.881783 Gtype    b'word:delta-fnr'
1.880511 O        b'+1:postag:VBN'
1.879464 O        b'-1:postag:NNS'
1.876269 Med      b'+1:lemma:0.4'
1.876269 Med      b'+1:word:0.4'
1.871734 Temp     b'-1:lemma:37'
1.871734 Temp     b'-1:word:37'
1.871425 O        b'lemma::'
1.871425 O        b'word::'
1.868713 O        b'word:OmpR'
1.868150 Supp     b'lemma:dpd'
1.868150 Supp     b'word:DPD'
1.853319 O        b'word:Lrp'
1.848564 Gtype    b'lemma:dfnr'
1.848564 Gtype    b'word:dFNR'
1.837008 Supp     b'lemma:rifampicin'
1.837008 Supp     b'word:rifampicin'
1.832663 Supp     b'lemma:Leu'
1.832663 Supp     b'word:Leu'
1.826429 O        b'lemma:CEL'
1.826429 O        b'word:CEL'
1.825782 Supp     b'lemma:Adenine'
1.825782 Supp     b'word:Adenine'
1.821597 Agit     b'+1:lemma:rpm'
1.821597 Agit     b'+1:word:rpm'
1.818715 Anti     b'lemma:seqa'
1.818715 Anti     b'word:SeqA'
1.809404 Gtype    b'lemma:WT'
1.805805 Supp     b'lemma:acetate'
1.805805 Supp     b'word:acetate'
1.805530 Med      b'lemma:m63'
1.805530 Med      b'word:M63'
1.802906 Gtype    b'lemma:fnr8myc'
1.802906 Gtype    b'word:Fnr8myc'
1.800687 Vess     b'-1:postag:VBN'
1.787834 O        b'+1:lemma:250'
1.787834 O        b'+1:word:250'
1.776683 Substrain b'lemma:mg1655star'
1.776683 Substrain b'word:MG1655star'
1.767257 pH       b'+1:postag:CD'
1.758674 Technique b'hUpper'
1.750745 O        b'-1:lemma:glucose'
1.750745 O        b'-1:word:glucose'
1.749526 Strain   b'+1:lemma:substr'
1.749526 Strain   b'+1:word:substr'
1.745624 O        b'-1:word:Aerobic'
1.739341 Med      b'+1:lemma:2.0'
1.739341 Med      b'+1:word:2.0'
1.725511 Technique b'lemma:rna-seq'
1.691245 Med      b'-1:word:ml'
1.689318 O        b'+1:lemma:od600'
1.689318 O        b'+1:word:OD600'
1.687872 Med      b'-1:lemma:ml'
1.680499 pH       b'lemma:ph5'
1.680499 pH       b'+1:lemma:.5'
1.680499 pH       b'word:pH5'
1.680499 pH       b'+1:word:.5'
1.666012 O        b'lemma:genotype/variation'
1.666012 O        b'word:genotype/variation'
1.665700 Med      b'lemma:medium'
1.665700 Med      b'word:medium'
1.641878 Temp     b'lemma:43'
1.641878 Temp     b'word:43'
1.623064 Supp     b'lemma:Trp'
1.623064 Supp     b'word:Trp'
1.623012 Supp     b'-1:lemma:+'
1.623012 Supp     b'-1:word:+'
1.620538 Gtype    b'lemma:deltaseqa'
1.620538 Gtype    b'-1:lemma:old'
1.620538 Gtype    b'word:deltaSeqA'
1.620538 Gtype    b'-1:word:old'
1.618730 Med      b'lemma:media'
1.618730 Med      b'word:media'
1.617491 O        b'word:C'
1.616535 Gtype    b'lemma:\xe2\x88\x86'
1.616535 Gtype    b'word:\xe2\x88\x86'
1.606662 Med      b'+1:postag:CD'
1.600582 O        b'+1:lemma:k-12'
1.600582 O        b'+1:word:K-12'
1.598528 O        b'lemma:ompr'
1.596409 Supp     b'+1:lemma:iptg'
1.596409 Supp     b'+1:word:IPTG'
1.596250 Supp     b'lemma:iptg'
1.596250 Supp     b'word:IPTG'
1.573680 Gtype    b'+1:postag::'
1.555896 Supp     b'-1:word:OmpR'
1.554933 O        b'+1:lemma:wt'
1.554479 O        b'-1:lemma:into'
1.554479 O        b'-1:word:into'
1.552075 O        b'+1:word:WT'
1.549523 O        b'lemma:for'
1.532063 Med      b'postag:NNP'
1.527241 Technique b'-1:lemma:_'
1.527241 Technique b'-1:word:_'
1.522576 Gtype    b'hUpper'
1.519610 Gtype    b'lemma:crp'
1.519610 Gtype    b'word:crp'
1.516422 Supp     b'word:NH4Cl'
1.511711 O        b'lemma:2-3'
1.511711 O        b'word:2-3'
1.506378 O        b'lemma:argr'
1.506378 O        b'word:ArgR'
1.492011 O        b'symb'
1.491221 Supp     b'lemma:leucine'
1.491221 Supp     b'word:leucine'
1.490841 Gtype    b'lemma:\xce\xb4fur'
1.490841 Gtype    b'word:\xce\x94fur'
1.490647 Agit     b'lemma:rpm'
1.490647 Agit     b'word:rpm'
1.489497 Temp     b'-1:lemma:\xcf\x8332'
1.489497 Temp     b'-1:word:\xcf\x8332'
1.480018 Supp     b'word:Arginine'
1.475301 Temp     b'-1:lemma:43'
1.475301 Temp     b'-1:word:43'
1.474505 Med      b'-1:lemma:LB'
1.470905 Technique b'-1:lemma:chip-exo'
1.464686 Gtype    b'+1:lemma:cra'
1.464686 Gtype    b'+1:word:cra'
1.464658 Supp     b'+1:word:hours'
1.464379 O        b'lemma:purr'
1.464379 O        b'word:PurR'
1.463541 Gtype    b'-1:lemma:nsrr'
1.463541 Gtype    b'+1:lemma:flagtag'
1.463541 Gtype    b'-1:word:NsrR'
1.463541 Gtype    b'+1:word:Flagtag'
1.456575 O        b'lemma:soxr'
1.456575 O        b'word:SoxR'
1.456575 O        b'lemma:soxs'
1.456575 O        b'word:SoxS'
1.442760 Agit     b'-1:lemma:250'
1.442760 Agit     b'-1:word:250'
1.437025 O        b'lemma:chip'
1.436662 Gtype    b'-1:lemma:_'
1.436662 Gtype    b'-1:word:_'
1.433891 O        b'postag:CC'
1.430806 O        b'+1:lemma:43'
1.430806 O        b'+1:word:43'
1.421480 Temp     b'+1:lemma:\xc2\xb0c'
1.421480 Temp     b'+1:word:\xc2\xb0C'
1.419864 Technique b'word:RNA-Seq'
1.416921 Substrain b'+1:lemma:phtpg'
1.416921 Substrain b'+1:word:PhtpG'
1.416885 Gtype    b'lemma:wild-type'
1.414589 Gversion b'postag:NN'
1.409351 Gversion b'-1:lemma:nc'
1.409351 Gversion b'+1:lemma:000913'
1.409351 Gversion b'-1:word:NC'
1.409351 Gversion b'+1:word:000913'
1.407322 Substrain b'-1:lemma:.'
1.407322 Substrain b'-1:postag:.'
1.407322 Substrain b'-1:word:.'
1.405956 O        b'word:for'
1.398828 OD       b'lemma:od450'
1.398828 OD       b'word:OD450'
1.398828 OD       b'-1:word:At'
1.396769 OD       b'-1:lemma:~'
1.396769 OD       b'-1:word:~'
1.396617 Gversion b'lemma:u00096'
1.396617 Gversion b'+1:lemma:.2'
1.396617 Gversion b'word:U00096'
1.396617 Gversion b'+1:word:.2'
1.393980 Supp     b'+1:lemma:deficient'
1.389877 O        b'+1:word:ChIP-Seq'
1.388459 Supp     b'postag:NNP'
1.387933 O        b'-1:lemma:ChIP-exo'
1.379371 O        b'lemma:or'
1.379371 O        b'word:or'
1.379143 Supp     b'-1:lemma:vol'
1.379143 Supp     b'-1:word:vol'
1.376454 Air      b'-1:postag::'
1.369781 O        b'-1:lemma:nh4cl'
1.368499 Supp     b'word:NH4CL'
1.362013 Supp     b'+1:lemma:1'
1.362013 Supp     b'+1:word:1'
1.360229 Gtype    b'+1:lemma:pq'
1.360229 Gtype    b'+1:word:PQ'
1.353398 Med      b'lemma:glucose'
1.353398 Med      b'word:glucose'
1.350050 O        b'-1:lemma:pq'
1.350050 O        b'-1:word:PQ'
1.346562 O        b'lemma:~'
1.346562 O        b'word:~'
1.341899 Temp     b'-1:word:sample'
1.337325 Gversion b'lemma:nc'
1.337325 Gversion b'word:NC'
1.336596 O        b'-1:word:ChIP-exo'
1.335409 Gversion b'lemma:000913'
1.335409 Gversion b'word:000913'
1.333339 Temp     b'lemma:\xc2\xb0c'
1.333339 Temp     b'word:\xc2\xb0C'
1.332023 O        b'lemma:gadx'
1.322786 Temp     b'lemma:37'
1.322786 Temp     b'word:37'
1.319683 O        b'word:GadX'
1.319623 Air      b'-1:postag:CD'
1.317709 O        b'+1:lemma:ph5'
1.317709 O        b'+1:word:pH5'
1.316318 Gtype    b'lemma:\xce\xb4cra'
1.313983 Gtype    b'-1:lemma:from'
1.313983 Gtype    b'-1:word:from'
1.313450 Gtype    b'word:wt'
1.311141 Gtype    b'lemma:delta-arca'
1.311141 Gtype    b'word:delta-arcA'
1.310033 Temp     b'-1:lemma:sample'
1.304924 Technique b'hLower'
1.301014 O        b'word:tagged'
1.298753 Gtype    b'hLower'
1.296788 O        b'-1:lemma:anaerobic'
1.293067 Air      b'-1:lemma:co2'
1.293067 Air      b'-1:word:CO2'
1.292522 O        b'lemma:a'
1.291957 O        b'+1:lemma:coli'
1.291957 O        b'+1:word:coli'
1.290465 O        b'+1:lemma:mid-log'
1.290465 O        b'+1:word:mid-log'
1.290236 Supp     b'+1:lemma:2'
1.290236 Supp     b'+1:word:2'
1.290124 Med      b'+1:lemma:-lrb-'
1.290124 Med      b'+1:word:-LRB-'
1.282532 Supp     b'+1:lemma:mm'
1.282532 Supp     b'+1:word:mM'
1.281292 Med      b'-1:lemma:fresh'
1.281292 Med      b'-1:word:fresh'
1.280835 OD       b'+1:postag:IN'
1.280175 Med      b'+1:postag:-LRB-'
1.274843 Supp     b'-1:lemma:with'
1.274843 Supp     b'-1:word:with'
1.264983 OD       b'-1:lemma:at'
1.263429 Air      b'-1:postag:NN'
1.262600 O        b'lemma:contain'
1.262600 O        b'word:containing'
1.262432 pH       b'+1:lemma:5.5'
1.262432 pH       b'+1:word:5.5'
1.261546 O        b'-1:lemma:type'
1.261546 O        b'-1:word:type'
1.260323 Gversion b'lemma:.2'
1.260323 Gversion b'-1:lemma:u00096'
1.260323 Gversion b'word:.2'
1.260323 Gversion b'-1:word:U00096'
1.259416 Supp     b'-1:lemma:without'
1.259416 Supp     b'-1:word:without'
1.252591 Technique b'+1:postag:NN'
1.250248 Med      b'isUpper'
1.246659 Gtype    b'-1:lemma:wild'
1.246659 Gtype    b'-1:word:wild'
1.245120 O        b'+1:lemma:0.2'
1.245120 O        b'+1:word:0.2'
1.241063 Supp     b'-1:lemma:ompr'
1.238774 O        b'lemma:trpr'
1.238774 O        b'word:TrpR'
1.235691 O        b'lemma:+'
1.235691 O        b'word:+'
1.235002 Gversion b'lemma:_'
1.235002 Gversion b'word:_'
1.234958 pH       b'lemma:5.5'
1.234958 pH       b'word:5.5'
1.228714 Technique b'+1:lemma:gadx'
1.228110 Supp     b'+1:word:was'
1.223826 Technique b'+1:word:GadX'
1.222797 O        b'-1:lemma:acetate'
1.222797 O        b'-1:word:acetate'
1.220925 O        b'lemma:affyexp'
1.220925 O        b'word:affyexp'
1.217540 Strain   b'-1:lemma:.'
1.217540 Strain   b'-1:postag:.'
1.217540 Strain   b'-1:word:.'
1.216021 O        b'-1:lemma:media'
1.216021 O        b'-1:word:media'
1.214813 O        b'-1:lemma:shake'
1.214813 O        b'-1:word:shaking'
1.212155 O        b'-1:lemma:wt'
1.208610 Agit     b'lemma:250'
1.208610 Agit     b'word:250'
1.208353 Supp     b'lemma:fructose'
1.208353 Supp     b'word:fructose'
1.206354 O        b'+1:postag:VBZ'
1.203483 Gtype    b'-1:lemma:rpob'
1.203483 Gtype    b'-1:word:RpoB'
1.202267 Gtype    b'word:\xce\x94cra'
1.200419 OD       b'lemma:0.3'
1.200419 OD       b'word:0.3'
1.198947 Med      b'lemma:minimal'
1.198947 Med      b'word:minimal'
1.195682 O        b'lemma:oxyr'
1.195682 O        b'word:OxyR'
1.194859 pH       b'-1:postag:NN'
1.189747 O        b'-1:lemma:genotype/variation'
1.189747 O        b'-1:word:genotype/variation'
1.189386 O        b'+1:lemma:\xe2\x88\x86'
1.189386 O        b'+1:word:\xe2\x88\x86'
1.188835 O        b'word:at'
1.187162 O        b'-1:lemma:no3'
1.187162 O        b'-1:word:NO3'
1.183985 O        b'-1:lemma:arginine'
1.183405 Technique b'-1:lemma:input'
1.183405 Technique b'-1:word:Input'
1.182333 Supp     b'+1:lemma:hour'
1.182225 O        b'-1:lemma:\xc2\xb0c'
1.182225 O        b'-1:word:\xc2\xb0C'
1.181774 Vess     b'+1:lemma:at'
1.181774 Vess     b'+1:word:at'
1.181689 Gtype    b'-1:postag:VBP'
1.181688 Gtype    b'postag:JJ'
1.179806 Anti     b'+1:postag:NN'
1.177727 Anti     b'-1:lemma:fnr'
1.175885 Air      b'lemma:Anaerobic'
1.172548 pH       b'-1:word:at'
1.166899 O        b'-1:word:fnr'
1.166656 O        b'lemma:Lrp'
1.161874 O        b'-1:lemma:nacl'
1.161874 O        b'-1:word:NaCl'
1.160799 Anti     b'+1:lemma:antibody'
1.160799 Anti     b'+1:word:antibody'
1.159896 O        b'+1:lemma:read'
1.156435 Supp     b'-1:postag:CC'
1.151561 O        b'lemma:culture'
1.151066 Med      b'+1:lemma:+'
1.151066 Med      b'+1:word:+'
1.150200 O        b'+1:word:reads'
1.139851 O        b'lemma:s'
1.139851 O        b'word:S'
1.139637 Technique b'+1:lemma:rna-seq'
1.139637 Technique b'+1:word:RNA-seq'
1.138454 O        b'+1:lemma:wash'
1.137863 OD       b'-1:postag:IN'
1.133991 O        b'-1:lemma:-80'
1.133991 O        b'-1:word:-80'
1.128751 pH       b'-1:lemma:at'
1.128694 Anti     b'-1:word:FNR'
1.127260 OD       b'-1:lemma:od450'
1.127260 OD       b'-1:word:OD450'
1.127094 Gtype    b'+1:lemma:control'
1.127094 Gtype    b'+1:word:control'
1.125662 OD       b'+1:lemma:of'
1.125662 OD       b'+1:word:of'
1.125603 O        b'lemma:Genome'
1.125603 O        b'word:Genome'
1.123677 O        b'lemma:harbor'
1.123677 O        b'word:harboring'
1.121461 Supp     b'+1:lemma:leucine'
1.121461 Supp     b'+1:word:leucine'
1.121345 O        b'lemma:Nac'
1.121345 O        b'word:Nac'
1.119437 Gtype    b'word:cra'
1.114384 Gtype    b'lemma:wild'
1.114384 Gtype    b'word:wild'
1.113050 O        b'-1:lemma:grow'
1.108630 O        b'-1:word:grown'
1.105014 Gversion b'postag:CD'
1.104336 Anti     b'hGreek'
1.096848 Supp     b'+1:lemma:_'
1.096848 Supp     b'+1:word:_'
1.095023 Gtype    b'lemma:ptac'
1.095023 Gtype    b'word:Ptac'
1.089560 O        b'-1:lemma:stpa'
1.089560 O        b'-1:word:stpA'
1.087595 Phase    b'-1:lemma:mid-log'
1.087595 Phase    b'-1:word:mid-log'
1.087001 Substrain b'postag:NN'
1.083256 Technique b'-1:lemma:rna-seq'
1.083256 Technique b'-1:word:RNA-seq'
1.079461 O        b'+1:lemma:fnr-8myc'
1.079461 O        b'+1:word:Fnr-8myc'
1.077740 O        b'postag:VBN'
1.077093 Gtype    b'-1:lemma:ptac'
1.077093 Gtype    b'-1:word:Ptac'


Top negative:
-0.095671 pH       b'hGreek'
-0.095821 Supp     b'-1:lemma:.'
-0.095821 Supp     b'-1:postag:.'
-0.095821 Supp     b'-1:word:.'
-0.096990 O        b'lemma:lb'
-0.098288 Supp     b'+1:word:were'
-0.099330 O        b'-1:lemma:-'
-0.099330 O        b'-1:word:-'
-0.100912 Supp     b'lemma:and'
-0.100912 Supp     b'word:and'
-0.101187 Technique b'+1:postag:JJ'
-0.101666 O        b'lemma:min'
-0.101666 O        b'word:min'
-0.102242 Supp     b'lemma:,'
-0.102242 Supp     b'postag:,'
-0.102242 Supp     b'word:,'
-0.102987 O        b'lemma:\xc3\x9f'
-0.102987 O        b'word:\xc3\x9f'
-0.104036 O        b'+1:lemma:until'
-0.104036 O        b'+1:word:until'
-0.105386 Anti     b'-1:postag:CD'
-0.106269 Temp     b'-1:lemma:\xc2\xb0c'
-0.106269 Temp     b'-1:word:\xc2\xb0C'
-0.106456 O        b'postag:NNP'
-0.110359 O        b'-1:lemma:um'
-0.110359 O        b'+1:lemma:paraquat'
-0.110359 O        b'-1:word:uM'
-0.110359 O        b'+1:word:paraquat'
-0.112145 Supp     b'+1:postag:NNP'
-0.112354 Supp     b'+1:lemma:dpd'
-0.112354 Supp     b'+1:word:DPD'
-0.116076 Air      b'+1:postag:NNS'
-0.116563 O        b'-1:lemma:final'
-0.116563 O        b'-1:word:final'
-0.117413 Vess     b'hLower'
-0.121260 O        b'-1:lemma:iptg'
-0.121260 O        b'-1:word:IPTG'
-0.121922 O        b'+1:word:Aerobic'
-0.122815 O        b'-1:word:for'
-0.123454 O        b'-1:lemma:pre-cleared'
-0.124084 O        b'-1:lemma:.'
-0.124084 O        b'-1:postag:.'
-0.124084 O        b'-1:word:.'
-0.124728 Med      b'+1:lemma:m9'
-0.124728 Med      b'+1:word:M9'
-0.125523 O        b'-1:postag:VBG'
-0.132516 Substrain b'hLower'
-0.132950 Supp     b'postag:IN'
-0.135625 O        b'+1:lemma:delta'
-0.135625 O        b'+1:word:delta'
-0.136389 O        b'+1:lemma:1/100'
-0.136389 O        b'+1:word:1/100'
-0.136545 O        b'+1:lemma:mutant'
-0.137870 Supp     b'-1:lemma:in'
-0.137870 Supp     b'-1:word:in'
-0.138183 Gversion b'hGreek'
-0.138568 Supp     b'-1:postag:VBG'
-0.139100 O        b'word:fnr'
-0.139351 O        b'+1:lemma:mg1655'
-0.139351 O        b'+1:word:MG1655'
-0.141486 pH       b'symb'
-0.142343 Gtype    b'-1:lemma:,'
-0.142343 Gtype    b'-1:postag:,'
-0.142343 Gtype    b'-1:word:,'
-0.143385 O        b'+1:lemma:media'
-0.143385 O        b'+1:word:media'
-0.146402 Supp     b'-1:lemma:the'
-0.147010 O        b'+1:postag:FW'
-0.148086 Technique b'+1:lemma:-rrb-'
-0.148086 Technique b'+1:word:-RRB-'
-0.149173 Supp     b'lemma:2'
-0.149173 Supp     b'word:2'
-0.149252 O        b'isGreek'
-0.149690 Gtype    b'+1:lemma:b'
-0.149690 Gtype    b'+1:word:B'
-0.149940 Supp     b'-1:word:the'
-0.150267 Substrain b'isNumber'
-0.151190 O        b'-1:lemma:sodium'
-0.151190 O        b'-1:word:Sodium'
-0.152179 O        b'+1:lemma:pahse'
-0.152179 O        b'+1:word:pahse'
-0.155440 O        b'lemma:1m'
-0.155440 O        b'word:1M'
-0.156574 O        b'+1:lemma:-lrb-'
-0.156574 O        b'+1:word:-LRB-'
-0.157104 O        b'+1:lemma:purify'
-0.157461 Supp     b'postag:CC'
-0.158489 O        b'+1:postag:DT'
-0.159988 O        b'+1:word:purified'
-0.161824 O        b'+1:lemma:dissolve'
-0.161824 O        b'+1:word:dissolved'
-0.162823 Supp     b'-1:lemma:Fe'
-0.162823 Supp     b'-1:word:Fe'
-0.162838 O        b'+1:lemma:strain'
-0.163446 O        b'lemma:n2'
-0.163446 O        b'word:N2'
-0.163478 Med      b'hGreek'
-0.164659 Supp     b'lemma:10'
-0.164659 Supp     b'word:10'
-0.164970 Technique b'+1:postag:-RRB-'
-0.168612 O        b'+1:lemma:5'
-0.168612 O        b'+1:word:5'
-0.172481 Air      b'isLower'
-0.172492 O        b'+1:lemma:rna'
-0.172492 O        b'+1:word:RNA'
-0.174006 O        b'+1:lemma:pk4854'
-0.174006 O        b'+1:word:PK4854'
-0.179078 Supp     b'+1:lemma:glucose'
-0.179078 Supp     b'+1:word:glucose'
-0.180052 O        b'+1:postag:CD'
-0.181204 O        b'-1:lemma:\xc3\x9f'
-0.181204 O        b'-1:word:\xc3\x9f'
-0.181903 Gversion b'hLower'
-0.182392 O        b'lemma:co2'
-0.182392 O        b'word:CO2'
-0.183369 O        b'+1:lemma:fecl2'
-0.183369 O        b'+1:word:FeCl2'
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