********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.018013571391409775, 'c2': 0.0003804545837364183}
best CV score:0.8153229850631285
model size: 0.14M

Flat F1: 0.8322086027292638
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.804     0.891        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      1.000     0.286     0.444         7
      Phase      0.941     0.762     0.842        21
        Air      0.634     0.591     0.612        88
       Anti      0.929     1.000     0.963        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.893     0.859     0.876        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.884     0.838     0.860       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.875     0.802     0.832       484


Top likely transitions:
Anti   -> Anti    5.909624
Med    -> Med     5.795801
Gtype  -> Gtype   5.696145
Gversion -> Gversion 5.411186
Temp   -> Temp    5.067894
O      -> O       4.799759
Air    -> Air     4.740098
Supp   -> Supp    4.260666
Technique -> Technique 4.142584
OD     -> OD      3.490983
pH     -> pH      3.452635
Agit   -> Agit    2.948567
Phase  -> Phase   2.729097
Substrain -> Gtype   1.306268
O      -> Technique 0.845595
Technique -> Air     0.618490
Gtype  -> Supp    0.565052
Gtype  -> pH      0.485408
O      -> Gtype   0.240040
O      -> pH      0.000384
Supp   -> Substrain -0.001248
Supp   -> Strain  -0.015323
Anti   -> OD      -0.055141
Temp   -> O       -0.060414
Phase  -> Air     -0.076492
Air    -> OD      -0.089164
Anti   -> Supp    -0.147177
Technique -> OD      -0.149457
OD     -> Gtype   -0.203197
Supp   -> Agit    -0.215649
O      -> Gversion -0.219772
Agit   -> O       -0.225260
Air    -> Agit    -0.227386
O      -> Substrain -0.258501
OD     -> Technique -0.265033
Supp   -> pH      -0.295916
pH     -> O       -0.301043
Phase  -> Anti    -0.332943
O      -> Supp    -0.339467
O      -> Strain  -0.344170
O      -> Vess    -0.365117
Phase  -> pH      -0.391797
Technique -> Med     -0.432451
O      -> Anti    -0.432869
Phase  -> Gtype   -0.443582
Med    -> OD      -0.450103
Strain -> O       -0.463778
Gtype  -> Technique -0.529402
Vess   -> O       -0.537135
Phase  -> Technique -0.554223
O      -> Agit    -0.555465
Temp   -> Air     -0.571131
pH     -> Supp    -0.643561
Air    -> Temp    -0.714234
O      -> Phase   -0.715879
Gversion -> O       -0.717384
OD     -> Air     -0.729748
Anti   -> Temp    -0.730315
Air    -> Supp    -0.734462
O      -> Temp    -0.744305
Phase  -> OD      -0.768260
Gtype  -> OD      -0.783571
OD     -> Supp    -0.793546
Technique -> O       -0.833692
Air    -> O       -0.864612
Anti   -> Med     -0.893829
Supp   -> Vess    -0.954467
Anti   -> Phase   -1.041897
Anti   -> O       -1.046274
O      -> OD      -1.047903
Supp   -> Air     -1.094392
Gtype  -> O       -1.125068
Anti   -> Gtype   -1.153550
OD     -> Temp    -1.279922
Phase  -> Supp    -1.298886
Supp   -> Temp    -1.528549
Air    -> Technique -1.534069
Supp   -> Gversion -1.538810
Supp   -> Anti    -1.589571
OD     -> O       -1.649244
Supp   -> OD      -1.658498
O      -> Air     -1.678517
Air    -> Phase   -1.777901
Med    -> O       -1.782035
Technique -> Gtype   -1.909353
Gtype  -> Med     -2.043706
Gtype  -> Anti    -2.159154
Gtype  -> Phase   -2.225015
OD     -> Med     -2.254606
Phase  -> Med     -2.257340
Supp   -> Gtype   -2.267294
Supp   -> O       -2.601677
Supp   -> Phase   -2.674549
Technique -> pH      -2.876700
Substrain -> O       -2.892597
Phase  -> O       -3.005933
Supp   -> Technique -3.275583
Temp   -> Med     -3.293841
Med    -> Supp    -3.371307
O      -> Med     -3.447713
Supp   -> Med     -6.390776


Top unlikely transitions:
Anti   -> Anti    5.909624
Med    -> Med     5.795801
Gtype  -> Gtype   5.696145
Gversion -> Gversion 5.411186
Temp   -> Temp    5.067894
O      -> O       4.799759
Air    -> Air     4.740098
Supp   -> Supp    4.260666
Technique -> Technique 4.142584
OD     -> OD      3.490983
pH     -> pH      3.452635
Agit   -> Agit    2.948567
Phase  -> Phase   2.729097
Substrain -> Gtype   1.306268
O      -> Technique 0.845595
Technique -> Air     0.618490
Gtype  -> Supp    0.565052
Gtype  -> pH      0.485408
O      -> Gtype   0.240040
O      -> pH      0.000384
Supp   -> Substrain -0.001248
Supp   -> Strain  -0.015323
Anti   -> OD      -0.055141
Temp   -> O       -0.060414
Phase  -> Air     -0.076492
Air    -> OD      -0.089164
Anti   -> Supp    -0.147177
Technique -> OD      -0.149457
OD     -> Gtype   -0.203197
Supp   -> Agit    -0.215649
O      -> Gversion -0.219772
Agit   -> O       -0.225260
Air    -> Agit    -0.227386
O      -> Substrain -0.258501
OD     -> Technique -0.265033
Supp   -> pH      -0.295916
pH     -> O       -0.301043
Phase  -> Anti    -0.332943
O      -> Supp    -0.339467
O      -> Strain  -0.344170
O      -> Vess    -0.365117
Phase  -> pH      -0.391797
Technique -> Med     -0.432451
O      -> Anti    -0.432869
Phase  -> Gtype   -0.443582
Med    -> OD      -0.450103
Strain -> O       -0.463778
Gtype  -> Technique -0.529402
Vess   -> O       -0.537135
Phase  -> Technique -0.554223
O      -> Agit    -0.555465
Temp   -> Air     -0.571131
pH     -> Supp    -0.643561
Air    -> Temp    -0.714234
O      -> Phase   -0.715879
Gversion -> O       -0.717384
OD     -> Air     -0.729748
Anti   -> Temp    -0.730315
Air    -> Supp    -0.734462
O      -> Temp    -0.744305
Phase  -> OD      -0.768260
Gtype  -> OD      -0.783571
OD     -> Supp    -0.793546
Technique -> O       -0.833692
Air    -> O       -0.864612
Anti   -> Med     -0.893829
Supp   -> Vess    -0.954467
Anti   -> Phase   -1.041897
Anti   -> O       -1.046274
O      -> OD      -1.047903
Supp   -> Air     -1.094392
Gtype  -> O       -1.125068
Anti   -> Gtype   -1.153550
OD     -> Temp    -1.279922
Phase  -> Supp    -1.298886
Supp   -> Temp    -1.528549
Air    -> Technique -1.534069
Supp   -> Gversion -1.538810
Supp   -> Anti    -1.589571
OD     -> O       -1.649244
Supp   -> OD      -1.658498
O      -> Air     -1.678517
Air    -> Phase   -1.777901
Med    -> O       -1.782035
Technique -> Gtype   -1.909353
Gtype  -> Med     -2.043706
Gtype  -> Anti    -2.159154
Gtype  -> Phase   -2.225015
OD     -> Med     -2.254606
Phase  -> Med     -2.257340
Supp   -> Gtype   -2.267294
Supp   -> O       -2.601677
Supp   -> Phase   -2.674549
Technique -> pH      -2.876700
Substrain -> O       -2.892597
Phase  -> O       -3.005933
Supp   -> Technique -3.275583
Temp   -> Med     -3.293841
Med    -> Supp    -3.371307
O      -> Med     -3.447713
Supp   -> Med     -6.390776


Top positive:
9.038621 Air      b'word:Aerobic'
8.673838 O        b'word:Cra'
8.248153 Med      b'lemma:LB'
7.889992 Med      b'lemma:MOPS'
7.889992 Med      b'word:MOPS'
7.582917 Air      b'word:Anaerobic'
7.371515 O        b'lemma:_'
7.371515 O        b'word:_'
7.138194 O        b'postag:VBG'
6.439825 Supp     b'-1:word:Cra'
6.382330 Air      b'lemma:anaerobic'
6.160515 Technique b'word:ChIP-Seq'
5.992228 Phase    b'lemma:stationary'
5.992228 Phase    b'word:stationary'
5.992228 Phase    b'lemma:exponential'
5.992228 Phase    b'word:exponential'
5.875264 Technique b'lemma:ChIP-exo'
5.845641 O        b'lemma:for'
5.793158 O        b'lemma:-'
5.793158 O        b'word:-'
5.677395 Technique b'lemma:rna-seq'
5.408869 O        b'-1:lemma:lb'
5.382781 Supp     b'lemma:Iron'
5.382781 Supp     b'word:Iron'
5.382781 Supp     b'+1:word:Deficient'
5.269295 Technique b'word:ChIP-exo'
5.207501 O        b'word:OmpR'
5.160668 O        b'lemma:at'
5.093131 O        b'-1:word:Anaerobic'
4.905974 Technique b'word:ChIPSeq'
4.890160 Supp     b'lemma:pq'
4.890160 Supp     b'word:PQ'
4.843104 O        b'word:Lrp'
4.820107 Gtype    b'lemma:wild-type'
4.734496 Supp     b'lemma:arginine'
4.674187 O        b'lemma:rpob'
4.674187 O        b'word:RpoB'
4.635211 O        b'-1:word:tag'
4.436184 Strain   b'+1:lemma:substr'
4.436184 Strain   b'+1:word:substr'
4.353939 O        b'lemma:chip'
4.346201 O        b'+1:lemma:od600'
4.346201 O        b'+1:word:OD600'
4.338896 Supp     b'+1:lemma:\xc2\xb5m'
4.338896 Supp     b'+1:word:\xc2\xb5M'
4.296301 Supp     b'lemma:nh4cl'
4.260703 Gtype    b'word:WT'
4.213958 Gtype    b'lemma:\xce\xb4cra'
4.201203 O        b'lemma:b'
4.201203 O        b'word:B'
4.193041 Technique b'lemma:chipseq'
4.192060 O        b'-1:lemma:tag'
4.160055 Phase    b'lemma:mid-log'
4.160055 Phase    b'word:mid-log'
4.096911 Gtype    b'word:\xce\x94cra'
4.032123 O        b'+1:word:ChIP-Seq'
4.012697 O        b'lemma:with'
4.012697 O        b'word:with'
3.978968 Supp     b'+1:word:hours'
3.965379 Gtype    b'lemma:delta-fnr'
3.965379 Gtype    b'word:delta-fnr'
3.948740 Supp     b'lemma:2h'
3.948740 Supp     b'-1:lemma:additional'
3.948740 Supp     b'word:2h'
3.948740 Supp     b'-1:word:additional'
3.896011 O        b'+1:postag:RB'
3.893223 O        b'word:C'
3.887431 Gtype    b'lemma:wt'
3.878200 Agit     b'lemma:rpm'
3.878200 Agit     b'word:rpm'
3.813132 Strain   b'lemma:k-12'
3.813132 Strain   b'word:K-12'
3.800950 Gtype    b'lemma:arca8myc'
3.800950 Gtype    b'word:ArcA8myc'
3.761967 Air      b'lemma:aerobically'
3.761967 Air      b'word:aerobically'
3.729493 Gtype    b'lemma:\xce\xb4fur'
3.729493 Gtype    b'word:\xce\x94fur'
3.669939 Gtype    b'lemma:wildtype'
3.657159 O        b'+1:lemma:k-12'
3.657159 O        b'+1:word:K-12'
3.627991 O        b'-1:lemma:glucose'
3.627991 O        b'-1:word:glucose'
3.620616 O        b'lemma::'
3.620616 O        b'word::'
3.558702 Gversion b'lemma:asm584v2'
3.558702 Gversion b'word:ASM584v2'
3.505817 O        b'+1:lemma:250'
3.505817 O        b'+1:word:250'
3.453998 O        b'-1:lemma:0.3'
3.453998 O        b'-1:word:0.3'
3.446595 Technique b'-1:lemma:chip-exo'
3.425766 Gtype    b'+1:lemma:cra'
3.425766 Gtype    b'+1:word:cra'
3.422817 O        b'-1:postag:NNS'
3.347608 Gversion b'lemma:chip-seq'
3.338074 O        b'lemma:soxr'
3.338074 O        b'word:SoxR'
3.338074 O        b'lemma:soxs'
3.338074 O        b'word:SoxS'
3.303413 Supp     b'lemma:rifampicin'
3.303413 Supp     b'word:rifampicin'
3.246225 O        b'+1:lemma:o.d.'
3.246225 O        b'+1:word:O.D.'
3.232062 O        b'lemma:argr'
3.232062 O        b'word:ArgR'
3.229031 O        b'-1:lemma:pq'
3.229031 O        b'-1:word:PQ'
3.226698 Agit     b'+1:lemma:rpm'
3.226698 Agit     b'+1:word:rpm'
3.223237 Supp     b'lemma:no3'
3.223237 Supp     b'word:NO3'
3.212599 O        b'lemma:chip-arca'
3.212599 O        b'word:chip-ArcA'
3.200027 O        b'lemma:or'
3.200027 O        b'word:or'
3.198616 Supp     b'lemma:acetate'
3.198616 Supp     b'word:acetate'
3.181880 Gtype    b'lemma:type'
3.181880 Gtype    b'word:type'
3.122023 O        b'lemma:purr'
3.122023 O        b'word:PurR'
3.087097 Med      b'+1:lemma:2.0'
3.087097 Med      b'+1:word:2.0'
3.081704 Med      b'+1:lemma:0.4'
3.081704 Med      b'+1:word:0.4'
3.060642 Med      b'-1:word:ml'
3.056426 Med      b'-1:lemma:ml'
3.053347 Supp     b'lemma:Fe'
3.053347 Supp     b'word:Fe'
3.049512 Gtype    b'lemma:delta-arca'
3.049512 Gtype    b'word:delta-arcA'
3.049371 Gtype    b'lemma:fnr8myc'
3.049371 Gtype    b'word:Fnr8myc'
3.013393 Substrain b'lemma:mg1655'
3.013393 Substrain b'word:MG1655'
3.000285 Temp     b'-1:word:sample'
2.995730 Gtype    b'lemma:\xce\xb4ompr'
2.995730 Gtype    b'word:\xce\x94ompR'
2.976998 Gtype    b'lemma:pk4854'
2.976998 Gtype    b'word:PK4854'
2.973089 Technique b'lemma:rnaseq'
2.973089 Technique b'word:RNASeq'
2.972999 Gtype    b'word:cra'
2.964849 Phase    b'postag:NN'
2.958258 O        b'-1:lemma:nacl'
2.958258 O        b'-1:word:NaCl'
2.952684 Supp     b'-1:lemma:+'
2.952684 Supp     b'-1:word:+'
2.951339 O        b'-1:lemma:acetate'
2.951339 O        b'-1:word:acetate'
2.942371 Temp     b'-1:lemma:sample'
2.920225 O        b'+1:lemma:coli'
2.920225 O        b'+1:word:coli'
2.917107 Med      b'-1:lemma:fresh'
2.917107 Med      b'-1:word:fresh'
2.910871 Gversion b'word:ChIP-Seq'
2.880789 O        b'+1:lemma:43'
2.880789 O        b'+1:word:43'
2.867856 O        b'lemma:trpr'
2.867856 O        b'word:TrpR'
2.849352 O        b'-1:lemma:into'
2.849352 O        b'-1:word:into'
2.843405 O        b'lemma:CEL'
2.843405 O        b'word:CEL'
2.831635 Vess     b'lemma:flask'
2.831635 Vess     b'-1:lemma:warm'
2.831635 Vess     b'word:flask'
2.831635 Vess     b'-1:word:warmed'
2.817307 Gtype    b'word:wt'
2.795038 O        b'word:A'
2.786698 O        b'lemma:2'
2.786698 O        b'word:2'
2.783841 Gtype    b'lemma:WT'
2.765001 O        b'-1:lemma:ChIP-exo'
2.749918 O        b'-1:lemma:fructose'
2.749918 O        b'-1:word:fructose'
2.737430 Technique b'+1:lemma:rna-seq'
2.737430 Technique b'+1:word:RNA-seq'
2.736216 Air      b'word:anaerobic'
2.719954 O        b'lemma:chip-fnr'
2.719954 O        b'word:chip-Fnr'
2.712001 Temp     b'lemma:43'
2.712001 Temp     b'word:43'
2.708916 Gtype    b'+1:lemma:type'
2.708916 Gtype    b'+1:word:type'
2.702493 O        b'lemma:gadx'
2.697779 Air      b'postag:RB'
2.697599 Air      b'lemma:anaeroibc'
2.697599 Air      b'word:Anaeroibc'
2.695409 O        b'lemma:Cra'
2.686279 Anti     b'lemma:seqa'
2.686279 Anti     b'word:SeqA'
2.671174 Anti     b'lemma:none'
2.671174 Anti     b'word:none'
2.659652 O        b'lemma:oxyr'
2.659652 O        b'word:OxyR'
2.644758 Supp     b'lemma:Adenine'
2.644758 Supp     b'word:Adenine'
2.637572 O        b'lemma:3'
2.637572 O        b'word:3'
2.628526 O        b'lemma:.'
2.628526 O        b'postag:.'
2.628526 O        b'word:.'
2.624697 Supp     b'-1:word:OmpR'
2.624184 O        b'lemma:rep2'
2.624184 O        b'word:rep2'
2.624184 O        b'lemma:rep1'
2.624184 O        b'word:rep1'
2.622710 Supp     b'lemma:glucose'
2.622710 Supp     b'word:glucose'
2.614298 Supp     b'lemma:Leu'
2.614298 Supp     b'word:Leu'
2.581219 O        b'lemma:1'
2.581219 O        b'word:1'
2.577855 O        b'lemma:Genome'
2.577855 O        b'word:Genome'
2.577532 O        b'-1:lemma:arginine'
2.570220 pH       b'+1:lemma:5.5'
2.570220 pH       b'+1:word:5.5'
2.560601 Supp     b'lemma:leucine'
2.560601 Supp     b'word:leucine'
2.558818 O        b'-1:word:Aerobic'
2.551711 O        b'lemma:ecolus'
2.551711 O        b'word:Ecoli'
2.547130 Supp     b'+1:lemma:2'
2.547130 Supp     b'+1:word:2'
2.536769 O        b'lemma:Nac'
2.536769 O        b'word:Nac'
2.527041 O        b'lemma:pt7'
2.527041 O        b'word:pT7'
2.502957 Anti     b'lemma:\xcf\x8332'
2.502957 Anti     b'word:\xcf\x8332'
2.501895 O        b'lemma:culture'
2.490706 Gtype    b'lemma:crp'
2.490706 Gtype    b'word:crp'
2.478586 Gtype    b'-1:postag:VBP'
2.474809 O        b'lemma:ntrc'
2.474809 O        b'word:NtrC'
2.474809 O        b'lemma:csir'
2.474809 O        b'word:CsiR'
2.463723 Temp     b'-1:lemma:43'
2.463723 Temp     b'-1:word:43'
2.460911 Technique b'+1:lemma:chip-exo'
2.459354 O        b'-1:word:ChIP-exo'
2.455558 Supp     b'lemma:dpd'
2.455558 Supp     b'word:DPD'
2.448813 OD       b'-1:lemma:about'
2.448813 OD       b'-1:word:about'
2.444523 O        b'lemma:affyexp'
2.444523 O        b'word:affyexp'
2.441581 O        b'lemma:ompr'
2.431034 Substrain b'lemma:mg1655star'
2.431034 Substrain b'word:MG1655star'
2.425078 O        b'word:GadX'
2.421226 Supp     b'+1:lemma:iptg'
2.421226 Supp     b'+1:word:IPTG'
2.418513 Gtype    b'lemma:dfnr'
2.418513 Gtype    b'word:dFNR'
2.398644 O        b'+1:lemma:mid-log'
2.398644 O        b'+1:word:mid-log'
2.391734 Supp     b'-1:lemma:Cra'
2.385804 Gtype    b'-1:lemma:\xe2\x88\x86'
2.385804 Gtype    b'-1:word:\xe2\x88\x86'
2.382003 Gtype    b'lemma:\xce\xb4oxyr'
2.382003 Gtype    b'word:\xce\x94oxyR'
2.372009 Supp     b'lemma:nacl'
2.372009 Supp     b'word:NaCl'
2.348608 Supp     b'lemma:Trp'
2.348608 Supp     b'word:Trp'
2.339662 Supp     b'lemma:iptg'
2.339662 Supp     b'word:IPTG'
2.339165 Technique b'-1:lemma:rna-seq'
2.339165 Technique b'-1:word:RNA-seq'
2.333954 Supp     b'word:NH4CL'
2.322649 Gtype    b'-1:lemma:factor'
2.322649 Gtype    b'-1:word:factor'
2.322442 Supp     b'+1:lemma:_'
2.322442 Supp     b'+1:word:_'
2.316167 O        b'postag:DT'
2.302289 Gversion b'-1:lemma:nc'
2.302289 Gversion b'+1:lemma:000913'
2.302289 Gversion b'-1:word:NC'
2.302289 Gversion b'+1:word:000913'
2.301251 Gversion b'lemma:nc'
2.301251 Gversion b'word:NC'
2.297800 O        b'+1:lemma:30'
2.297800 O        b'+1:word:30'
2.275921 Air      b'-1:lemma:-'
2.275921 Air      b'-1:word:-'
2.272502 Technique b'+1:word:ChIP-exo'
2.272230 O        b'+1:postag:VBN'
2.258023 Air      b'lemma:aerobic'
2.254756 Gversion b'lemma:000913'
2.254756 Gversion b'word:000913'
2.242377 O        b'+1:postag:VBZ'
2.234396 Anti     b'-1:word:FNR'
2.232577 O        b'-1:lemma:type'
2.232577 O        b'-1:word:type'
2.228684 O        b'word:for'
2.208333 Gtype    b'postag:JJ'
2.199984 Supp     b'+1:lemma:1'
2.199984 Supp     b'+1:word:1'
2.198792 Gtype    b'lemma:\xce\xb4soxs'
2.198792 Gtype    b'word:\xce\x94soxS'
2.184777 Gtype    b'lemma:\xe2\x88\x86'
2.184777 Gtype    b'word:\xe2\x88\x86'
2.171976 Gtype    b'-1:lemma:nsrr'
2.171976 Gtype    b'+1:lemma:flagtag'
2.171976 Gtype    b'-1:word:NsrR'
2.171976 Gtype    b'+1:word:Flagtag'
2.163520 Med      b'word:LB'
2.162168 Gtype    b'-1:postag:VBG'
2.161351 O        b'postag:IN'
2.157248 OD       b'lemma:0.3-0.35'
2.157248 OD       b'word:0.3-0.35'
2.156091 Air      b'-1:lemma:ChIP-Seq'
2.156091 Air      b'-1:word:ChIP-Seq'
2.153099 Anti     b'-1:lemma:fnr'
2.124299 O        b'+1:postag:NNP'
2.117285 pH       b'lemma:ph5'
2.117285 pH       b'+1:lemma:.5'
2.117285 pH       b'word:pH5'
2.117285 pH       b'+1:word:.5'
2.114860 O        b'-1:lemma:\xc2\xb0c'
2.114860 O        b'-1:word:\xc2\xb0C'
2.110636 Gtype    b'+1:word:the'
2.088611 Gtype    b'+1:lemma:the'
2.088095 OD       b'lemma:od450'
2.088095 OD       b'word:OD450'
2.088095 OD       b'-1:word:At'
2.085570 Gversion b'lemma:u00096'
2.085570 Gversion b'+1:lemma:.2'
2.085570 Gversion b'word:U00096'
2.085570 Gversion b'+1:word:.2'
2.083544 Supp     b'-1:lemma:potassium'
2.083544 Supp     b'-1:word:potassium'
2.067635 O        b'lemma:ml'
2.048794 Anti     b'lemma:purify'
2.044124 Supp     b'-1:lemma:with'
2.044124 Supp     b'-1:word:with'
2.034862 Temp     b'-1:lemma:37'
2.034862 Temp     b'-1:word:37'
2.032211 Substrain b'+1:lemma:phtpg'
2.032211 Substrain b'+1:word:PhtpG'
2.017844 Temp     b'lemma:\xc2\xb0c'
2.017844 Temp     b'word:\xc2\xb0C'
2.001723 Anti     b'lemma:anti-myc'
2.001723 Anti     b'word:anti-myc'
1.993176 Gtype    b'lemma:deltaseqa'
1.993176 Gtype    b'-1:lemma:old'
1.993176 Gtype    b'word:deltaSeqA'
1.993176 Gtype    b'-1:word:old'
1.989661 Phase    b'-1:lemma:until'
1.989661 Phase    b'-1:word:until'
1.979160 Supp     b'-1:lemma:without'
1.979160 Supp     b'-1:word:without'
1.978831 Anti     b'+1:lemma:antibody'
1.978831 Anti     b'+1:word:antibody'
1.971415 Supp     b'-1:lemma:ompr'
1.958523 Temp     b'-1:lemma:\xcf\x8332'
1.958523 Temp     b'-1:word:\xcf\x8332'
1.954010 Gtype    b'-1:lemma:rpob'
1.954010 Gtype    b'-1:word:RpoB'
1.949329 O        b'+1:word:WT'
1.944082 Gtype    b'lemma:\xce\xb4soxr'
1.944082 Gtype    b'word:\xce\x94soxR'
1.941890 Gtype    b'lemma:delta-soxr'
1.941890 Gtype    b'word:delta-soxR'
1.941890 Gtype    b'lemma:delta-gadx'
1.941890 Gtype    b'word:delta-gadX'
1.941890 Gtype    b'lemma:delta-gadw'
1.941890 Gtype    b'word:delta-gadW'
1.941890 Gtype    b'lemma:delta-oxyr'
1.941890 Gtype    b'word:delta-oxyR'
1.941890 Gtype    b'lemma:delta-gade'
1.941890 Gtype    b'word:delta-gadE'
1.941890 Gtype    b'lemma:delta-soxs'
1.941890 Gtype    b'word:delta-soxS'
1.940370 Med      b'lemma:medium'
1.940370 Med      b'word:medium'
1.937312 O        b'lemma:\xcf\x8332'
1.937312 O        b'word:\xcf\x8332'
1.925635 O        b'+1:lemma:pq'
1.925635 O        b'+1:word:PQ'
1.923796 Gtype    b'lemma:gade-8myc'
1.923796 Gtype    b'word:gadE-8myc'
1.923796 Gtype    b'lemma:\xce\xb4seqa'
1.923796 Gtype    b'word:\xce\x94seqA'
1.910479 pH       b'lemma:5.5'
1.910479 pH       b'word:5.5'
1.902597 Anti     b'lemma:anti-rpob'
1.902597 Anti     b'word:anti-RpoB'
1.900558 O        b'+1:lemma:0.2'
1.900558 O        b'+1:word:0.2'
1.889851 Gtype    b'lemma:\xce\xb4arca'
1.889851 Gtype    b'word:\xce\x94arcA'
1.889430 Technique b'+1:word:GadX'
1.886793 Technique b'+1:lemma:gadx'
1.883966 O        b'lemma:a'
1.877891 O        b'lemma:delta'
1.877891 O        b'word:delta'
1.874471 Anti     b'lemma:anti-rpos'
1.874471 Anti     b'word:anti-RpoS'
1.871828 O        b'+1:word:LB'
1.871236 Med      b'lemma:media'
1.871236 Med      b'word:media'
1.871067 Supp     b'lemma:tryptophan'
1.871067 Supp     b'-1:lemma:mg/l'
1.871067 Supp     b'word:tryptophan'
1.871067 Supp     b'-1:word:mg/L'
1.869443 Agit     b'-1:lemma:250'
1.869443 Agit     b'-1:word:250'
1.866633 O        b'lemma:s'
1.866633 O        b'word:S'
1.866096 O        b'-1:lemma:0.3-0.35'
1.866096 O        b'-1:word:0.3-0.35'
1.864903 O        b'+1:lemma:wt'
1.851153 Gtype    b'lemma:fnr-8myc'
1.851153 Gtype    b'word:Fnr-8myc'
1.849989 Anti     b'-1:lemma:monoclonal'
1.849989 Anti     b'-1:word:monoclonal'
1.843817 O        b'-1:lemma:medium'
1.843817 O        b'-1:word:medium'
1.820041 O        b'+1:lemma:read'
1.815345 Med      b'lemma:m63'
1.815345 Med      b'word:M63'
1.802462 Supp     b'+1:lemma:Deficient'
1.800049 Gversion b'lemma:.2'
1.800049 Gversion b'-1:lemma:u00096'
1.800049 Gversion b'word:.2'
1.800049 Gversion b'-1:word:U00096'
1.791620 O        b'word:at'
1.788511 Gtype    b'lemma:\xce\xb4gade'
1.788511 Gtype    b'word:\xce\x94gadE'
1.782199 Supp     b'-1:lemma:respiration'
1.782199 Supp     b'+1:lemma:mmol'
1.782199 Supp     b'-1:word:respiration'
1.782199 Supp     b'+1:word:mmol'
1.780291 Anti     b'-1:lemma:polymerase'
1.777505 O        b'+1:lemma:wash'
1.776735 Med      b'+1:lemma:-lrb-'
1.776735 Med      b'+1:word:-LRB-'
1.774252 Med      b'+1:postag:-LRB-'
1.772728 O        b'-1:lemma:no3'
1.772728 O        b'-1:word:NO3'
1.758671 Gtype    b'-1:lemma:ptac'
1.758671 Gtype    b'-1:word:Ptac'
1.755781 Technique b'lemma:ChIP-Seq'
1.752401 OD       b'+1:lemma:of'
1.752401 OD       b'+1:word:of'
1.750972 Temp     b'word:sample'
1.749331 Gtype    b'lemma:ompr-8myc'
1.749331 Gtype    b'word:ompR-8myc'
1.730836 OD       b'-1:lemma:at'
1.726858 Gtype    b'lemma:ryhb'
1.725375 Technique b'-1:lemma:IP'
1.725375 Technique b'-1:word:IP'
1.715983 O        b'lemma:harbor'
1.715983 O        b'word:harboring'
1.704794 O        b'-1:lemma:min'
1.704794 O        b'-1:word:min'
1.703503 Med      b'postag:NNS'
1.686333 O        b'lemma:Lrp'
1.685730 Temp     b'lemma:sample'
1.679393 Supp     b'lemma:fructose'
1.679393 Supp     b'word:fructose'
1.679023 Supp     b'-1:lemma:sodium'
1.679023 Supp     b'-1:word:Sodium'
1.668642 O        b'-1:lemma:.5'
1.668642 O        b'-1:word:.5'
1.655643 O        b'word:tagged'
1.650664 Gtype    b'lemma:\xce\xb4gadw'
1.650664 Gtype    b'word:\xce\x94gadW'
1.650664 Gtype    b'lemma:\xce\xb4gadx'
1.650664 Gtype    b'word:\xce\x94gadX'
1.646189 O        b'+1:word:reads'
1.638492 Supp     b'+1:lemma:deficient'
1.636242 O        b'-1:lemma:tryptophan'
1.636242 O        b'-1:word:tryptophan'
1.628225 O        b'lemma:+'
1.628225 O        b'word:+'
1.626721 Supp     b'lemma:glutamine'
1.626721 Supp     b'-1:lemma:2g/l'
1.626721 Supp     b'word:glutamine'
1.626721 Supp     b'-1:word:2g/L'
1.620944 Temp     b'+1:lemma:see'
1.620944 Temp     b'+1:word:see'
1.616130 O        b'+1:lemma:old'
1.616130 O        b'+1:word:old'
1.613431 O        b'+1:lemma:fnr-8myc'
1.613431 O        b'+1:word:Fnr-8myc'
1.599562 OD       b'+1:postag:IN'
1.593131 Air      b'postag:JJ'
1.590393 Gtype    b'lemma:purr-8myc'
1.590393 Gtype    b'word:PurR-8myc'
1.590363 OD       b'lemma:o.d.'
1.590363 OD       b'+1:lemma:600nm'
1.590363 OD       b'word:O.D.'
1.590363 OD       b'+1:word:600nm'


Top negative:
-0.001428 Gtype    b'+1:word:,'
-0.002350 Gtype    b'-1:lemma:,'
-0.002350 Gtype    b'-1:postag:,'
-0.002350 Gtype    b'-1:word:,'
-0.002911 Air      b'lemma:-lrb-'
-0.002911 Air      b'word:-LRB-'
-0.003051 Gtype    b'+1:postag:-LRB-'
-0.005759 Supp     b'lemma:.'
-0.005759 Supp     b'postag:.'
-0.005759 Supp     b'word:.'
-0.007286 O        b'+1:word:a'
-0.007421 O        b'+1:lemma:co2'
-0.007421 O        b'+1:word:CO2'
-0.008054 O        b'+1:lemma:7.6'
-0.008054 O        b'+1:word:7.6'
-0.008072 O        b'+1:postag:CD'
-0.008535 O        b'-1:lemma:m9'
-0.008535 O        b'-1:word:M9'
-0.009138 Agit     b'isUpper'
-0.009176 O        b'-1:lemma:25'
-0.009176 O        b'-1:word:25'
-0.009281 Med      b'+1:postag:NNS'
-0.009788 O        b'lemma:7.6'
-0.009788 O        b'+1:lemma:;'
-0.009788 O        b'word:7.6'
-0.009788 O        b'+1:word:;'
-0.010951 O        b'lemma:mg/ml'
-0.010951 O        b'-1:lemma:150'
-0.010951 O        b'word:mg/mL'
-0.010951 O        b'-1:word:150'
-0.011137 O        b'-1:lemma:dfnr'
-0.011137 O        b'-1:word:dFNR'
-0.012423 O        b'word:anaerobic'
-0.012574 Gtype    b'postag::'
-0.014421 O        b'+1:lemma:antibody'
-0.014421 O        b'+1:word:antibody'
-0.015322 Supp     b'-1:lemma:.'
-0.015322 Supp     b'-1:postag:.'
-0.015322 Supp     b'-1:word:.'
-0.017411 Supp     b'-1:lemma:Fe'
-0.017411 Supp     b'-1:word:Fe'
-0.017886 O        b'word:NH4Cl'
-0.017889 OD       b'+1:lemma:0.4'
-0.017889 OD       b'+1:word:0.4'
-0.018444 O        b'+1:postag:VBG'
-0.018607 OD       b'+1:lemma:2.0'
-0.018607 OD       b'+1:word:2.0'
-0.019443 Air      b'-1:lemma:-lrb-'
-0.019443 Air      b'-1:word:-LRB-'
-0.023509 O        b'+1:lemma:ph'
-0.023509 O        b'+1:word:pH'
-0.023802 Temp     b'-1:postag:NN'
-0.024115 O        b'+1:lemma:95'
-0.024115 O        b'+1:word:95'
-0.025439 O        b'+1:lemma:5'
-0.025439 O        b'+1:word:5'
-0.025566 Phase    b'+1:postag:IN'
-0.026329 O        b'lemma:;'
-0.026329 O        b'-1:lemma:7.6'
-0.026329 O        b'word:;'
-0.026329 O        b'-1:word:7.6'
-0.028255 O        b'+1:word:cultures'
-0.031321 O        b'+1:lemma:phase'
-0.031321 O        b'+1:word:phase'
-0.033112 Supp     b'-1:lemma:;'
-0.033112 Supp     b'-1:word:;'
-0.033411 Supp     b'-1:word:the'
-0.033460 Air      b'postag:-LRB-'
-0.035248 Supp     b'lemma:ph'
-0.035248 Supp     b'word:pH'
-0.038435 Vess     b'isLower'
-0.041065 Supp     b'-1:lemma:the'
-0.042333 O        b'+1:lemma:%'
-0.042333 O        b'+1:word:%'
-0.044482 Anti     b'isLower'
-0.045494 O        b'lemma:25'
-0.045494 O        b'word:25'
-0.046198 O        b'lemma:nacl'
-0.046198 O        b'word:NaCl'
-0.046505 Technique b'-1:lemma::'
-0.046505 Technique b'-1:word::'
-0.047289 Temp     b'lemma:-rrb-'
-0.047289 Temp     b'word:-RRB-'
-0.047657 O        b'-1:postag:-LRB-'
-0.048571 Air      b'-1:postag:-LRB-'
-0.049880 O        b'-1:lemma:0.1'
-0.049880 O        b'-1:word:0.1'
-0.050561 O        b'-1:lemma:iptg'
-0.050561 O        b'-1:word:IPTG'
-0.055809 O        b'+1:lemma:media'
-0.055809 O        b'+1:word:media'
-0.055937 O        b'+1:lemma:arginine'
-0.057554 O        b'+1:word:for'
-0.057631 O        b'+1:lemma:25'
-0.057631 O        b'+1:word:25'
-0.057974 O        b'lemma:vol'
-0.057974 O        b'-1:lemma:1/100'
-0.057974 O        b'word:vol'
-0.057974 O        b'-1:word:1/100'
-0.058654 Supp     b'lemma:2'
-0.058654 Supp     b'word:2'
-0.059560 Supp     b'-1:lemma:in'
-0.059560 Supp     b'-1:word:in'
-0.064323 O        b'lemma:1/100'
-0.064323 O        b'+1:lemma:vol'
-0.064323 O        b'word:1/100'
-0.064323 O        b'+1:word:vol'
-0.065542 O        b'lemma:phase'
-0.065542 O        b'word:phase'
-0.065767 O        b'lemma:od600'
-0.065767 O        b'word:OD600'
-0.066417 Supp     b'-1:postag:NN'
-0.066622 O        b'-1:lemma:-'
-0.066622 O        b'-1:word:-'
-0.066804 O        b'+1:lemma:='
-0.066804 O        b'+1:word:='
-0.067533 O        b'+1:lemma:300'
-0.067533 O        b'+1:word:300'
-0.068196 O        b'+1:lemma:culture'
-0.068719 O        b'-1:lemma:0.2'
-0.068719 O        b'-1:word:0.2'
-0.068869 O        b'+1:lemma:o2'
-0.068869 O        b'+1:word:O2'
-0.070078 Supp     b'-1:postag:VBN'
-0.071293 Temp     b'postag:-RRB-'
-0.073395 O        b'lemma:lb'
-0.076244 O        b'-1:lemma:-lrb-'
-0.076244 O        b'-1:word:-LRB-'
-0.076993 O        b'+1:lemma:-lrb-'
-0.076993 O        b'+1:word:-LRB-'
-0.077706 O        b'lemma:70'
-0.077706 O        b'word:70'
-0.079011 O        b'word:fnr'
-0.080633 O        b'-1:lemma:.'
-0.080633 O        b'-1:postag:.'
-0.080633 O        b'-1:word:.'
-0.082108 Supp     b'lemma:-rrb-'
-0.082108 Supp     b'word:-RRB-'
-0.082842 Substrain b'+1:postag:NN'
-0.084035 Supp     b'postag:NNS'
-0.084972 Gtype    b'+1:lemma:2'
-0.084972 Gtype    b'+1:word:2'
-0.095226 O        b'+1:postag:-LRB-'
-0.095424 O        b'-1:lemma:phosphate'
-0.095424 O        b'-1:word:phosphate'
-0.097635 O        b'-1:lemma:to'
-0.097635 O        b'-1:postag:TO'
-0.097648 Supp     b'lemma:,'
-0.097648 Supp     b'postag:,'
-0.097648 Supp     b'word:,'
-0.101642 Gtype    b'-1:lemma:and'
-0.101642 Gtype    b'-1:word:and'
-0.102211 O        b'+1:lemma:dissolve'
-0.102211 O        b'+1:word:dissolved'
-0.102882 O        b'+1:lemma:70'
-0.102882 O        b'+1:word:70'
-0.104318 O        b'word:tag'
-0.104912 Technique b'-1:postag:NN'
-0.105150 Air      b'+1:postag:CD'
-0.109836 Supp     b'postag:-RRB-'
-0.118678 O        b'+1:lemma:2.0'
-0.118678 O        b'+1:word:2.0'
-0.118886 Supp     b'-1:postag:DT'
-0.120086 O        b'-1:lemma:='
-0.120086 O        b'-1:word:='
-0.121180 O        b'-1:lemma:mid-log'
-0.121180 O        b'-1:word:mid-log'
-0.121254 Air      b'postag:CD'
-0.122506 Gtype    b'-1:postag:CD'
-0.122716 O        b'lemma:1m'
-0.122716 O        b'word:1M'
-0.123515 O        b'-1:lemma:for'
-0.130058 O        b'-1:postag:DT'
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-0.130709 O        b'-1:lemma:final'
-0.130709 O        b'-1:word:final'
-0.137540 O        b'lemma:ph'
-0.137540 O        b'word:pH'
-0.137960 O        b'+1:lemma:sample'
-0.142304 Supp     b'lemma:300'
-0.142304 Supp     b'word:300'
-0.143132 Gtype    b'+1:postag:JJ'
-0.148943 Supp     b'+1:postag:JJ'
-0.150896 Med      b'+1:postag:NN'
-0.151919 O        b'-1:lemma:um'
-0.151919 O        b'+1:lemma:paraquat'
-0.151919 O        b'-1:word:uM'
-0.151919 O        b'+1:word:paraquat'
-0.153164 Vess     b'isNumber'
-0.153293 Med      b'-1:postag:NN'
-0.153458 O        b'+1:postag:DT'
-0.156889 O        b'lemma:o2'
-0.156889 O        b'word:O2'
-0.157680 O        b'-1:lemma:contain'
-0.157680 O        b'-1:word:containing'
-0.160272 O        b'lemma:m9'
-0.160272 O        b'word:M9'
-0.162890 O        b'lemma:paraquat'
-0.162890 O        b'word:paraquat'
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-0.166624 O        b'lemma:n2'
-0.166624 O        b'word:N2'
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-0.172514 Anti     b'postag:CD'
-0.174219 O        b'+1:lemma:until'
-0.174219 O        b'+1:word:until'
-0.176674 O        b'word:ChIP-exo'
-0.177060 Vess     b'isUpper'
-0.177294 Strain   b'+1:postag:NN'
-0.180285 O        b'+1:lemma:1/100'
-0.180285 O        b'+1:word:1/100'
-0.180638 O        b'-1:lemma:20'
-0.180638 O        b'-1:word:20'
-0.181965 Gtype    b'+1:lemma:\xe2\x88\x86'
-0.181965 Gtype    b'+1:word:\xe2\x88\x86'
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-0.186060 O        b'word:CO2'
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-0.187671 O        b'word:0.2'
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-0.195965 Supp     b'+1:lemma:-rrb-'
-0.195965 Supp     b'+1:word:-RRB-'
-0.196318 O        b'-1:lemma:ph'
-0.196318 O        b'-1:word:pH'
-0.196996 Gtype    b'+1:postag:CD'
-0.200246 Supp     b'+1:postag:SYM'
-0.206515 Gversion b'isNumber'
-0.208165 O        b'lemma:\xe2\x88\x86'
-0.208165 O        b'word:\xe2\x88\x86'
-0.209672 Supp     b'+1:postag:-RRB-'
-0.209713 O        b'word:WT'
-0.211676 Gtype    b'+1:lemma:-rrb-'
-0.211676 Gtype    b'+1:word:-RRB-'
-0.214053 O        b'+1:lemma:genome'
-0.214053 O        b'+1:word:genome'
-0.215686 O        b'+1:lemma:-rrb-'
-0.215686 O        b'+1:word:-RRB-'
-0.218265 Supp     b'lemma:-lrb-'
-0.218265 Supp     b'word:-LRB-'
-0.223430 Gtype    b'+1:lemma:crp'
-0.223430 Gtype    b'+1:word:crp'
-0.226706 O        b'+1:lemma:.'
-0.226706 O        b'+1:postag:.'
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-0.226819 O        b'-1:postag:IN'
-0.232527 O        b'-1:word:for'
-0.233408 O        b'+1:lemma:m'
-0.233408 O        b'+1:word:M'
-0.234100 O        b'lemma:20'
-0.234100 O        b'word:20'
-0.235000 O        b'word:hours'
-0.236794 Supp     b'-1:lemma:dpd'
-0.236794 Supp     b'-1:word:DPD'
-0.236843 O        b'-1:lemma:1m'
-0.236843 O        b'-1:word:1M'
-0.238122 Supp     b'postag:-LRB-'
-0.238363 O        b'+1:lemma:pahse'
-0.238363 O        b'+1:word:pahse'
-0.241267 O        b'+1:lemma:+'
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-0.242911 OD       b'isLower'
-0.244282 O        b'lemma:fructose'
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