Carlos-Francisco Méndez-Cruz / automatic-extraction-growth-conditions

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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.00017349682901428325, 'c2': 0.07978979191208807}
best CV score:0.8266267801413506
model size: 0.16M

Flat F1: 0.8035657443886721
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.895     0.386     0.540        88
       Anti      0.750     0.923     0.828        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.923     0.769     0.839        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.870     0.838     0.854       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.906     0.746     0.804       484


Top likely transitions:
Supp   -> Supp    4.985653
Temp   -> Temp    4.652760
Med    -> Med     4.501574
OD     -> OD      4.356774
Gtype  -> Gtype   4.242235
Anti   -> Anti    4.191548
Phase  -> Phase   3.513492
Air    -> Air     3.495523
O      -> O       3.459101
Gversion -> Gversion 3.448442
pH     -> pH      2.933449
Technique -> Technique 2.421408
Agit   -> Agit    2.081008
Substrain -> Gtype   1.467692
O      -> Supp    1.334088
Gtype  -> Supp    1.318148
O      -> Gtype   0.850366
Technique -> Air     0.845894
O      -> Technique 0.740110
Air    -> O       0.629246
O      -> Strain  0.358278
Supp   -> O       0.335194
Gtype  -> pH      0.254761
O      -> Temp    0.239899
Temp   -> O       0.217597
Gtype  -> Air     0.159272
Strain -> O       0.150233
O      -> pH      0.136323
O      -> Vess    0.125675
Vess   -> O       0.082216
O      -> Phase   0.068479
Med    -> O       0.061574
Agit   -> O       0.030286
Vess   -> Strain  -0.000726
Vess   -> Substrain -0.002207
Vess   -> Vess    -0.002368
Strain -> Strain  -0.003708
Substrain -> Vess    -0.005151
Vess   -> Agit    -0.007698
Vess   -> Anti    -0.009620
Vess   -> Gversion -0.013051
Strain -> Vess    -0.013217
Agit   -> Substrain -0.014143
Substrain -> Substrain -0.015920
Strain -> Substrain -0.017398
Substrain -> Strain  -0.018180
Agit   -> Strain  -0.018793
Vess   -> Phase   -0.020259
Substrain -> Agit    -0.022782
Agit   -> Anti    -0.023164
Vess   -> pH      -0.024316
Agit   -> Phase   -0.024369
Substrain -> Phase   -0.026683
Substrain -> Anti    -0.028849
Gversion -> Strain  -0.030731
Anti   -> Strain  -0.031030
Strain -> Agit    -0.031865
Gversion -> Vess    -0.032267
pH     -> Strain  -0.032842
Med    -> Substrain -0.035533
Strain -> Temp    -0.035896
Agit   -> Gversion -0.036433
Gversion -> Substrain -0.036790
Strain -> Anti    -0.038059
Substrain -> Gversion -0.038579
Vess   -> Technique -0.040227
O      -> Agit    -0.044870
Temp   -> Vess    -0.046458
Strain -> Technique -0.046465
pH     -> Vess    -0.047288
Temp   -> Strain  -0.047711
Med    -> Strain  -0.047714
Strain -> Gversion -0.047991
OD     -> Vess    -0.048266
pH     -> Substrain -0.051252
Agit   -> pH      -0.051735
Vess   -> OD      -0.051839
Med    -> Vess    -0.052238
Phase  -> Agit    -0.052265
Technique -> Vess    -0.052984
Phase  -> Vess    -0.053890
Anti   -> Agit    -0.055931
Vess   -> Supp    -0.056628
Vess   -> Med     -0.059705
Temp   -> Agit    -0.060116
Temp   -> Substrain -0.060952
Strain -> Med     -0.062862
OD     -> Substrain -0.065764
OD     -> Anti    -0.066526
Vess   -> Temp    -0.067415
pH     -> Phase   -0.067479
Agit   -> Vess    -0.067885
Air    -> Vess    -0.070302
Anti   -> Vess    -0.070725
pH     -> Anti    -0.072109
Strain -> Phase   -0.072287
Substrain -> Temp    -0.073225
pH     -> Technique -0.078099
Med    -> Phase   -0.079367
Agit   -> Temp    -0.082284
Vess   -> Gtype   -0.082708
Agit   -> OD      -0.085982
Phase  -> Strain  -0.088087
Agit   -> Med     -0.091735
OD     -> Phase   -0.092862
Temp   -> Phase   -0.093500
Phase  -> Substrain -0.093685
Gversion -> Phase   -0.095312
Substrain -> Technique -0.096098
Temp   -> Gversion -0.096909
Temp   -> pH      -0.098406
Med    -> Anti    -0.100647
Air    -> Strain  -0.100873
Med    -> Agit    -0.102329
Technique -> Strain  -0.103578
Anti   -> Substrain -0.104029
Supp   -> Strain  -0.106567
OD     -> Strain  -0.108687
Substrain -> Med     -0.112400
Gversion -> Anti    -0.114827
Gtype  -> Strain  -0.118609
Temp   -> Anti    -0.120353
Gversion -> Agit    -0.120991
Strain -> pH      -0.121513
Vess   -> Air     -0.126668
pH     -> O       -0.128900
Strain -> Supp    -0.133596
OD     -> Gversion -0.140398
OD     -> Agit    -0.146799
Temp   -> Technique -0.149362
Substrain -> pH      -0.151263
Med    -> Gversion -0.155289
Gtype  -> Vess    -0.166376
Agit   -> Technique -0.172463
Agit   -> Supp    -0.173794
OD     -> O       -0.174723
Strain -> Air     -0.174810
Agit   -> Gtype   -0.176815
pH     -> Med     -0.179116
Med    -> OD      -0.181160
Substrain -> OD      -0.181534
Phase  -> pH      -0.183524
Strain -> OD      -0.183817
Supp   -> Substrain -0.187373
Substrain -> Air     -0.192919
pH     -> Gtype   -0.193927
Technique -> Substrain -0.194562
pH     -> Agit    -0.196317
Supp   -> Vess    -0.198773
Substrain -> Supp    -0.200329
O      -> Anti    -0.201834
Anti   -> Gversion -0.204042
Gversion -> Temp    -0.205340
Technique -> Phase   -0.207496
Strain -> Gtype   -0.208805
Gversion -> pH      -0.211938
Med    -> pH      -0.218270
Air    -> Anti    -0.218967
pH     -> Gversion -0.219140
Technique -> Agit    -0.226547
Phase  -> Air     -0.229749
Supp   -> Agit    -0.231091
pH     -> Temp    -0.232083
Phase  -> Gversion -0.232683
Air    -> Substrain -0.233684
Temp   -> Supp    -0.243556
Technique -> Anti    -0.249710
Technique -> Temp    -0.249724
Gversion -> OD      -0.254506
OD     -> pH      -0.255846
Gversion -> Med     -0.258509
Temp   -> OD      -0.267446
Gtype  -> Agit    -0.272656
pH     -> OD      -0.282037
Phase  -> Temp    -0.293863
pH     -> Supp    -0.294571
OD     -> Med     -0.295068
Anti   -> Technique -0.298261
Anti   -> Phase   -0.311943
Anti   -> O       -0.314922
O      -> Gversion -0.316902
Phase  -> Supp    -0.320271
Phase  -> Anti    -0.321051
Anti   -> OD      -0.322683
Air    -> pH      -0.328422
OD     -> Gtype   -0.331773
Temp   -> Gtype   -0.342657
Air    -> Gversion -0.345185
Med    -> Temp    -0.345459
Supp   -> Phase   -0.347305
Anti   -> pH      -0.351519
Med    -> Gtype   -0.354444
Gversion -> Supp    -0.358035
O      -> OD      -0.366539
Gversion -> Gtype   -0.375809
Gversion -> Technique -0.378843
Supp   -> Anti    -0.379564
pH     -> Air     -0.381229
Phase  -> Gtype   -0.384595
Anti   -> Air     -0.413281
O      -> Substrain -0.414627
Supp   -> pH      -0.418685
Gtype  -> Substrain -0.422233
Supp   -> Temp    -0.434672
OD     -> Temp    -0.445314
Med    -> Air     -0.446478
OD     -> Supp    -0.466616
Air    -> Gtype   -0.473526
Air    -> Technique -0.485632
Supp   -> OD      -0.492957
Supp   -> Technique -0.496450
Anti   -> Supp    -0.504688
Gversion -> Air     -0.520113
Technique -> Gversion -0.525680
Temp   -> Air     -0.526464
Anti   -> Gtype   -0.532651
Agit   -> Air     -0.533150
Supp   -> Gtype   -0.549298
Phase  -> O       -0.549367
Supp   -> Gversion -0.550511
Gtype  -> OD      -0.551036
Med    -> Technique -0.552594
Technique -> Med     -0.561409
Technique -> Supp    -0.561491
OD     -> Technique -0.565556
Air    -> OD      -0.576758
Anti   -> Med     -0.599229
Supp   -> Air     -0.609204
Gtype  -> Technique -0.610772
Phase  -> Med     -0.633268
Gtype  -> Gversion -0.634807
Air    -> Supp    -0.652380
Air    -> Temp    -0.662192
Gtype  -> Phase   -0.665678
Gversion -> O       -0.672835
Gtype  -> O       -0.691770
Air    -> Phase   -0.730197
Phase  -> OD      -0.757310
Air    -> Med     -0.760750
O      -> Med     -0.763229
Temp   -> Med     -0.845979
Gtype  -> Temp    -0.875035
Anti   -> Temp    -0.895890
Air    -> Agit    -0.903771
Gtype  -> Anti    -0.934239
Phase  -> Technique -0.960140
Technique -> OD      -1.039237
Technique -> Gtype   -1.099149
Technique -> O       -1.100431
Gtype  -> Med     -1.120543
O      -> Air     -1.140883
OD     -> Air     -1.163978
Supp   -> Med     -1.295320
Med    -> Supp    -1.315045
Substrain -> O       -1.317435
Technique -> pH      -1.880683


Top unlikely transitions:
Supp   -> Supp    4.985653
Temp   -> Temp    4.652760
Med    -> Med     4.501574
OD     -> OD      4.356774
Gtype  -> Gtype   4.242235
Anti   -> Anti    4.191548
Phase  -> Phase   3.513492
Air    -> Air     3.495523
O      -> O       3.459101
Gversion -> Gversion 3.448442
pH     -> pH      2.933449
Technique -> Technique 2.421408
Agit   -> Agit    2.081008
Substrain -> Gtype   1.467692
O      -> Supp    1.334088
Gtype  -> Supp    1.318148
O      -> Gtype   0.850366
Technique -> Air     0.845894
O      -> Technique 0.740110
Air    -> O       0.629246
O      -> Strain  0.358278
Supp   -> O       0.335194
Gtype  -> pH      0.254761
O      -> Temp    0.239899
Temp   -> O       0.217597
Gtype  -> Air     0.159272
Strain -> O       0.150233
O      -> pH      0.136323
O      -> Vess    0.125675
Vess   -> O       0.082216
O      -> Phase   0.068479
Med    -> O       0.061574
Agit   -> O       0.030286
Vess   -> Strain  -0.000726
Vess   -> Substrain -0.002207
Vess   -> Vess    -0.002368
Strain -> Strain  -0.003708
Substrain -> Vess    -0.005151
Vess   -> Agit    -0.007698
Vess   -> Anti    -0.009620
Vess   -> Gversion -0.013051
Strain -> Vess    -0.013217
Agit   -> Substrain -0.014143
Substrain -> Substrain -0.015920
Strain -> Substrain -0.017398
Substrain -> Strain  -0.018180
Agit   -> Strain  -0.018793
Vess   -> Phase   -0.020259
Substrain -> Agit    -0.022782
Agit   -> Anti    -0.023164
Vess   -> pH      -0.024316
Agit   -> Phase   -0.024369
Substrain -> Phase   -0.026683
Substrain -> Anti    -0.028849
Gversion -> Strain  -0.030731
Anti   -> Strain  -0.031030
Strain -> Agit    -0.031865
Gversion -> Vess    -0.032267
pH     -> Strain  -0.032842
Med    -> Substrain -0.035533
Strain -> Temp    -0.035896
Agit   -> Gversion -0.036433
Gversion -> Substrain -0.036790
Strain -> Anti    -0.038059
Substrain -> Gversion -0.038579
Vess   -> Technique -0.040227
O      -> Agit    -0.044870
Temp   -> Vess    -0.046458
Strain -> Technique -0.046465
pH     -> Vess    -0.047288
Temp   -> Strain  -0.047711
Med    -> Strain  -0.047714
Strain -> Gversion -0.047991
OD     -> Vess    -0.048266
pH     -> Substrain -0.051252
Agit   -> pH      -0.051735
Vess   -> OD      -0.051839
Med    -> Vess    -0.052238
Phase  -> Agit    -0.052265
Technique -> Vess    -0.052984
Phase  -> Vess    -0.053890
Anti   -> Agit    -0.055931
Vess   -> Supp    -0.056628
Vess   -> Med     -0.059705
Temp   -> Agit    -0.060116
Temp   -> Substrain -0.060952
Strain -> Med     -0.062862
OD     -> Substrain -0.065764
OD     -> Anti    -0.066526
Vess   -> Temp    -0.067415
pH     -> Phase   -0.067479
Agit   -> Vess    -0.067885
Air    -> Vess    -0.070302
Anti   -> Vess    -0.070725
pH     -> Anti    -0.072109
Strain -> Phase   -0.072287
Substrain -> Temp    -0.073225
pH     -> Technique -0.078099
Med    -> Phase   -0.079367
Agit   -> Temp    -0.082284
Vess   -> Gtype   -0.082708
Agit   -> OD      -0.085982
Phase  -> Strain  -0.088087
Agit   -> Med     -0.091735
OD     -> Phase   -0.092862
Temp   -> Phase   -0.093500
Phase  -> Substrain -0.093685
Gversion -> Phase   -0.095312
Substrain -> Technique -0.096098
Temp   -> Gversion -0.096909
Temp   -> pH      -0.098406
Med    -> Anti    -0.100647
Air    -> Strain  -0.100873
Med    -> Agit    -0.102329
Technique -> Strain  -0.103578
Anti   -> Substrain -0.104029
Supp   -> Strain  -0.106567
OD     -> Strain  -0.108687
Substrain -> Med     -0.112400
Gversion -> Anti    -0.114827
Gtype  -> Strain  -0.118609
Temp   -> Anti    -0.120353
Gversion -> Agit    -0.120991
Strain -> pH      -0.121513
Vess   -> Air     -0.126668
pH     -> O       -0.128900
Strain -> Supp    -0.133596
OD     -> Gversion -0.140398
OD     -> Agit    -0.146799
Temp   -> Technique -0.149362
Substrain -> pH      -0.151263
Med    -> Gversion -0.155289
Gtype  -> Vess    -0.166376
Agit   -> Technique -0.172463
Agit   -> Supp    -0.173794
OD     -> O       -0.174723
Strain -> Air     -0.174810
Agit   -> Gtype   -0.176815
pH     -> Med     -0.179116
Med    -> OD      -0.181160
Substrain -> OD      -0.181534
Phase  -> pH      -0.183524
Strain -> OD      -0.183817
Supp   -> Substrain -0.187373
Substrain -> Air     -0.192919
pH     -> Gtype   -0.193927
Technique -> Substrain -0.194562
pH     -> Agit    -0.196317
Supp   -> Vess    -0.198773
Substrain -> Supp    -0.200329
O      -> Anti    -0.201834
Anti   -> Gversion -0.204042
Gversion -> Temp    -0.205340
Technique -> Phase   -0.207496
Strain -> Gtype   -0.208805
Gversion -> pH      -0.211938
Med    -> pH      -0.218270
Air    -> Anti    -0.218967
pH     -> Gversion -0.219140
Technique -> Agit    -0.226547
Phase  -> Air     -0.229749
Supp   -> Agit    -0.231091
pH     -> Temp    -0.232083
Phase  -> Gversion -0.232683
Air    -> Substrain -0.233684
Temp   -> Supp    -0.243556
Technique -> Anti    -0.249710
Technique -> Temp    -0.249724
Gversion -> OD      -0.254506
OD     -> pH      -0.255846
Gversion -> Med     -0.258509
Temp   -> OD      -0.267446
Gtype  -> Agit    -0.272656
pH     -> OD      -0.282037
Phase  -> Temp    -0.293863
pH     -> Supp    -0.294571
OD     -> Med     -0.295068
Anti   -> Technique -0.298261
Anti   -> Phase   -0.311943
Anti   -> O       -0.314922
O      -> Gversion -0.316902
Phase  -> Supp    -0.320271
Phase  -> Anti    -0.321051
Anti   -> OD      -0.322683
Air    -> pH      -0.328422
OD     -> Gtype   -0.331773
Temp   -> Gtype   -0.342657
Air    -> Gversion -0.345185
Med    -> Temp    -0.345459
Supp   -> Phase   -0.347305
Anti   -> pH      -0.351519
Med    -> Gtype   -0.354444
Gversion -> Supp    -0.358035
O      -> OD      -0.366539
Gversion -> Gtype   -0.375809
Gversion -> Technique -0.378843
Supp   -> Anti    -0.379564
pH     -> Air     -0.381229
Phase  -> Gtype   -0.384595
Anti   -> Air     -0.413281
O      -> Substrain -0.414627
Supp   -> pH      -0.418685
Gtype  -> Substrain -0.422233
Supp   -> Temp    -0.434672
OD     -> Temp    -0.445314
Med    -> Air     -0.446478
OD     -> Supp    -0.466616
Air    -> Gtype   -0.473526
Air    -> Technique -0.485632
Supp   -> OD      -0.492957
Supp   -> Technique -0.496450
Anti   -> Supp    -0.504688
Gversion -> Air     -0.520113
Technique -> Gversion -0.525680
Temp   -> Air     -0.526464
Anti   -> Gtype   -0.532651
Agit   -> Air     -0.533150
Supp   -> Gtype   -0.549298
Phase  -> O       -0.549367
Supp   -> Gversion -0.550511
Gtype  -> OD      -0.551036
Med    -> Technique -0.552594
Technique -> Med     -0.561409
Technique -> Supp    -0.561491
OD     -> Technique -0.565556
Air    -> OD      -0.576758
Anti   -> Med     -0.599229
Supp   -> Air     -0.609204
Gtype  -> Technique -0.610772
Phase  -> Med     -0.633268
Gtype  -> Gversion -0.634807
Air    -> Supp    -0.652380
Air    -> Temp    -0.662192
Gtype  -> Phase   -0.665678
Gversion -> O       -0.672835
Gtype  -> O       -0.691770
Air    -> Phase   -0.730197
Phase  -> OD      -0.757310
Air    -> Med     -0.760750
O      -> Med     -0.763229
Temp   -> Med     -0.845979
Gtype  -> Temp    -0.875035
Anti   -> Temp    -0.895890
Air    -> Agit    -0.903771
Gtype  -> Anti    -0.934239
Phase  -> Technique -0.960140
Technique -> OD      -1.039237
Technique -> Gtype   -1.099149
Technique -> O       -1.100431
Gtype  -> Med     -1.120543
O      -> Air     -1.140883
OD     -> Air     -1.163978
Supp   -> Med     -1.295320
Med    -> Supp    -1.315045
Substrain -> O       -1.317435
Technique -> pH      -1.880683


Top positive:
7.503498 O        b'lemma:_'
4.789662 Gtype    b'lemma:wt'
4.555611 Supp     b'lemma:Iron'
4.550216 Air      b'lemma:anaerobic'
4.257450 Technique b'lemma:chipseq'
3.884602 Supp     b'lemma:pq'
3.793265 Supp     b'lemma:glucose'
3.657801 O        b'postag::'
3.599177 O        b'lemma:1'
3.415205 Supp     b'lemma:2h'
3.415205 Supp     b'-1:lemma:additional'
3.407024 Phase    b'lemma:mid-log'
3.353509 Supp     b'+1:lemma:\xc2\xb5m'
3.268628 O        b'lemma:2'
3.267445 Gtype    b'-1:lemma:\xe2\x88\x86'
3.250399 O        b'lemma:Cra'
3.212803 Air      b'-1:lemma:ChIP-Seq'
3.212428 Supp     b'lemma:nh4cl'
3.174265 Gtype    b'lemma:type'
3.167417 Gversion b'lemma:asm584v2'
3.114028 Gtype    b'lemma:arca8myc'
3.086422 Temp     b'+1:lemma:\xc2\xb0c'
3.084200 O        b'lemma:b'
3.061472 Gtype    b'hGreek'
3.029662 Air      b'lemma:aerobically'
3.014362 O        b'lemma:.'
3.014362 O        b'postag:.'
2.994341 Air      b'-1:lemma:-'
2.952582 O        b'lemma:\xcf\x8332'
2.951494 O        b'lemma:chip-arca'
2.947836 Gtype    b'lemma:WT'
2.915824 Air      b'lemma:aerobic'
2.908700 O        b'-1:lemma:tag'
2.899526 O        b'postag:IN'
2.888296 Strain   b'lemma:k-12'
2.852484 O        b'lemma:rep2'
2.852484 O        b'lemma:rep1'
2.845660 Phase    b'lemma:stationary'
2.845660 Phase    b'lemma:exponential'
2.841508 Technique b'lemma:ChIP-exo'
2.837073 Gtype    b'+1:lemma:type'
2.799953 Supp     b'lemma:acetate'
2.786259 Supp     b'lemma:no3'
2.783692 Med      b'lemma:MOPS'
2.769422 O        b'lemma:-'
2.696693 Gtype    b'lemma:\xe2\x88\x86'
2.691146 O        b'lemma:CEL'
2.676683 Air      b'lemma:anaeroibc'
2.659504 O        b'lemma:chip-fnr'
2.643149 O        b'lemma:rpob'
2.640756 Supp     b'-1:lemma:Cra'
2.610889 O        b'lemma:genotype/variation'
2.586144 Gversion b'lemma:chip-seq'
2.573057 O        b'postag:VBG'
2.540191 O        b'lemma:3'
2.536633 Supp     b'lemma:nacl'
2.487294 Supp     b'+1:lemma:Deficient'
2.487087 Supp     b'lemma:rifampicin'
2.484581 Substrain b'lemma:mg1655'
2.465499 Med      b'lemma:LB'
2.453869 Air      b'postag:RB'
2.427825 O        b'-1:lemma:glucose'
2.425440 O        b'+1:lemma:pq'
2.416212 Gtype    b'lemma:fnr8myc'
2.411520 Vess     b'lemma:flask'
2.411520 Vess     b'-1:lemma:warm'
2.399903 pH       b'lemma:ph5'
2.399903 pH       b'+1:lemma:.5'
2.390440 O        b'-1:lemma:0.3'
2.374722 O        b'lemma:with'
2.367503 O        b'postag:CC'
2.363594 Supp     b'-1:lemma:with'
2.359799 Supp     b'lemma:arginine'
2.350847 Technique b'-1:lemma:_'
2.340096 Med      b'+1:lemma:0.4'
2.319303 Med      b'lemma:lb'
2.312754 Strain   b'+1:lemma:substr'
2.309100 Gtype    b'lemma:pk4854'
2.301134 Supp     b'lemma:dpd'
2.299879 Temp     b'lemma:\xc2\xb0c'
2.288462 Supp     b'+1:lemma:1'
2.287246 O        b'+1:lemma:od600'
2.278928 Supp     b'lemma:Adenine'
2.273075 Supp     b'lemma:Fe'
2.263213 Gtype    b'lemma:dfnr'
2.262328 O        b'lemma:a'
2.260049 Anti     b'lemma:seqa'
2.249877 Supp     b'+1:lemma:2'
2.238399 Temp     b'-1:lemma:37'
2.237625 Technique b'lemma:rnaseq'
2.236649 Technique b'hUpper'
2.203423 O        b'+1:lemma:wt'
2.198547 Substrain b'lemma:mg1655star'
2.168571 Supp     b'lemma:iptg'
2.135369 pH       b'+1:postag:CD'
2.125228 Anti     b'lemma:none'
2.117620 Temp     b'lemma:37'
2.112867 Supp     b'lemma:Leu'
2.091331 Gtype    b'lemma:deltaseqa'
2.091331 Gtype    b'-1:lemma:old'
2.077364 Supp     b'+1:lemma:mm'
2.071551 Air      b'-1:lemma:co2'
2.069160 Vess     b'-1:postag:VBN'
2.059480 Phase    b'-1:lemma:mid-log'
2.054810 O        b'-1:lemma:lb'
2.045123 Gtype    b'-1:lemma:nsrr'
2.045123 Gtype    b'+1:lemma:flagtag'
2.044200 O        b'+1:lemma:coli'
2.040891 Temp     b'lemma:43'
2.039435 Agit     b'+1:lemma:rpm'
2.031961 Gtype    b'lemma:delta-fnr'
2.031590 O        b'-1:lemma:anaerobic'
2.030761 Anti     b'lemma:\xcf\x8332'
2.015180 O        b'postag:VBN'
2.008374 Med      b'lemma:minimal'
2.002327 Supp     b'+1:lemma:deficient'
1.998317 O        b'+1:postag:RB'
1.982403 Med      b'-1:lemma:ml'
1.975359 O        b'+1:lemma:k-12'
1.973266 Supp     b'-1:lemma:vol'
1.931113 Gversion b'lemma:000913'
1.919419 O        b'+1:lemma:43'
1.909250 Gtype    b'-1:lemma:_'
1.899748 Substrain b'+1:lemma:phtpg'
1.886258 Supp     b'-1:lemma:+'
1.885664 Anti     b'+1:lemma:antibody'
1.883897 Agit     b'lemma:rpm'
1.883176 Supp     b'+1:lemma:_'
1.867809 Supp     b'lemma:Trp'
1.864895 Gtype    b'lemma:crp'
1.864885 Gtype    b'lemma:wildtype'
1.860788 Agit     b'lemma:250'
1.858794 O        b'+1:lemma:ph5'
1.846202 O        b'-1:postag:NNS'
1.840575 Supp     b'-1:lemma:potassium'
1.832219 Air      b'lemma:Anaerobic'
1.825545 Agit     b'-1:lemma:250'
1.824458 Gversion b'lemma:u00096'
1.824458 Gversion b'+1:lemma:.2'
1.808672 Gversion b'-1:lemma:nc'
1.808672 Gversion b'+1:lemma:000913'
1.798155 Supp     b'+1:lemma:iptg'
1.795310 Med      b'lemma:media'
1.789690 Temp     b'-1:lemma:43'
1.782681 Med      b'-1:lemma:fresh'
1.779569 O        b'-1:lemma:genotype/variation'
1.777237 O        b'lemma:chip'
1.773412 Anti     b'-1:lemma::'
1.772742 Gversion b'lemma:.2'
1.772742 Gversion b'-1:lemma:u00096'
1.771369 O        b'lemma::'
1.766723 O        b'lemma:at'
1.755003 Med      b'-1:lemma:minimal'
1.753265 O        b'lemma:affyexp'
1.749917 Gtype    b'lemma:ptac'
1.749769 Gtype    b'-1:lemma:ptac'
1.749566 Gtype    b'+1:lemma:_'
1.736116 Gtype    b'lemma:\xce\xb4fur'
1.733402 Supp     b'lemma:fructose'
1.732682 O        b'lemma:soxr'
1.732682 O        b'lemma:soxs'
1.731436 Vess     b'+1:lemma:at'
1.728967 Gtype    b'-1:lemma:wild'
1.724099 Med      b'-1:lemma:in'
1.720967 O        b'lemma:argr'
1.719877 Phase    b'lemma:phase'
1.705613 Phase    b'postag:NN'
1.705087 Gtype    b'+1:lemma:control'
1.697339 O        b'+1:lemma:\xe2\x88\x86'
1.695660 O        b'-1:lemma:no3'
1.694089 Med      b'+1:lemma:+'
1.692407 Gtype    b'+1:postag::'
1.679374 O        b'lemma:s'
1.677660 Substrain b'-1:lemma:.'
1.677660 Substrain b'-1:postag:.'
1.673238 O        b'-1:lemma:ChIP-exo'
1.652965 O        b'symb'
1.651882 Gtype    b'lemma:phtpg'
1.650022 Gtype    b'+1:lemma:with'
1.642839 Gtype    b'+1:lemma:pq'
1.636626 Air      b'lemma:%'
1.635426 Air      b'+1:lemma:%'
1.633887 pH       b'+1:lemma:5.5'
1.633068 Supp     b'+1:lemma:hour'
1.626686 Gtype    b'-1:lemma:rpob'
1.623032 Gversion b'lemma:nc'
1.621424 O        b'lemma:purr'
1.621133 O        b'+1:lemma:250'
1.617626 Supp     b'-1:lemma:sodium'
1.616832 O        b'-1:lemma:nh4cl'
1.611487 Gtype    b'lemma:nsrr'
1.605172 OD       b'-1:lemma:od450'
1.602459 Med      b'+1:lemma:2.0'
1.600124 Med      b'lemma:glucose'
1.596170 Supp     b'-1:lemma:ompr'
1.589955 OD       b'lemma:od450'
1.578778 O        b'postag:DT'
1.578240 Phase    b'-1:lemma:until'
1.577731 O        b'lemma:~'
1.570259 O        b'lemma:-rrb-'
1.569625 Technique b'+1:lemma:gadx'
1.565639 O        b'-1:lemma:pq'
1.563877 Technique b'+1:lemma:chip-exo'
1.562493 Air      b'-1:lemma:ryhb'
1.553895 O        b'lemma:-lrb-'
1.542183 O        b'-1:lemma:Anaerobic'
1.542059 O        b'lemma:A'
1.541124 Anti     b'-1:lemma:fnr'
1.539235 O        b'-1:lemma:into'
1.535738 Med      b'+1:lemma:minimal'
1.534056 OD       b'+1:postag:IN'
1.528246 Gversion b'+1:lemma:genome'
1.527721 OD       b'-1:postag:IN'
1.525815 Gtype    b'lemma:delta-arca'
1.524252 OD       b'lemma:0.3'
1.520946 O        b'postag:-RRB-'
1.515438 Supp     b'-1:lemma:without'
1.514768 Supp     b'-1:lemma:contain'
1.513509 Temp     b'-1:lemma:\xcf\x8332'
1.510868 Gtype    b'hLower'
1.509516 O        b'lemma:-80'
1.506924 OD       b'-1:lemma:at'
1.506564 O        b'lemma:gadx'
1.504233 O        b'-1:lemma:-80'
1.501333 Technique b'lemma:rna-seq'
1.500442 Temp     b'-1:lemma:sample'
1.498909 Med      b'+1:postag:CD'
1.498356 Gversion b'postag:CD'
1.497014 Technique b'hLower'
1.494404 Air      b'+1:lemma:or'
1.493267 Gtype    b'-1:lemma:phtpg'
1.493177 Gtype    b'lemma:\xce\xb4cra'
1.487884 Air      b'-1:lemma:%'
1.486463 Med      b'symb'
1.485167 Gtype    b'-1:lemma:Wild'
1.482892 Gversion b'lemma:_'
1.477218 O        b'-1:lemma:type'
1.476952 Gtype    b'-1:lemma:from'
1.473195 Med      b'lemma:medium'
1.472537 Med      b'lemma:m63'
1.464102 Technique b'lemma:ChIP-Seq'
1.463126 pH       b'lemma:5.5'
1.460237 O        b'lemma:ompr'
1.459406 Supp     b'lemma:leucine'
1.457801 O        b'lemma:Lrp'
1.457624 Technique b'-1:lemma:IP'
1.449775 O        b'-1:lemma:Aerobic'
1.447453 Med      b'+1:lemma:-lrb-'
1.438593 O        b'lemma:culture'
1.437051 Gtype    b'lemma:wild'
1.435920 Gversion b'postag:NN'
1.435762 O        b'-1:lemma:wt'
1.429685 Gtype    b'+1:lemma::'
1.426140 Gtype    b'hUpper'
1.426072 Med      b'postag:NNP'
1.426031 Med      b'+1:postag:-LRB-'
1.415309 Gtype    b'-1:postag:VBP'
1.414818 OD       b'+1:lemma:of'
1.413643 Technique b'lemma:chip-exo'
1.407271 Gtype    b'+1:lemma:cra'
1.404063 Air      b'-1:lemma:_'
1.398529 Technique b'-1:lemma:1'
1.397296 pH       b'-1:lemma:at'
1.392687 Technique b'+1:lemma:rna-seq'
1.392519 OD       b'postag:IN'
1.390166 O        b'lemma:C'
1.388544 O        b'-1:lemma:\xc2\xb0c'
1.380923 O        b'lemma:for'
1.380736 O        b'-1:lemma:stpa'
1.378652 O        b'-1:lemma:.5'
1.364999 Technique b'-1:lemma:input'
1.356656 O        b'postag:CD'
1.347834 O        b'-1:lemma:phase'
1.342029 O        b'-1:lemma:nacl'
1.338972 pH       b'lemma:ph'
1.338343 O        b'lemma:E.'
1.332811 Strain   b'-1:lemma:.'
1.332811 Strain   b'-1:postag:.'
1.327197 O        b'+1:lemma:sparging'
1.318076 O        b'postag:-LRB-'
1.316483 OD       b'-1:lemma:~'
1.310047 Supp     b'lemma:sodium'
1.306592 Gtype    b'lemma:Wild'
1.302822 Gtype    b'-1:lemma::'
1.302303 Air      b'lemma:Aerobic'
1.302087 Supp     b'-1:lemma:\xce\xb4cra'
1.300100 Supp     b'-1:lemma:respiration'
1.300100 Supp     b'+1:lemma:mmol'
1.298959 Anti     b'hGreek'
1.291262 O        b'lemma:harbor'
1.286366 OD       b'lemma:of'
1.286261 Supp     b'lemma:tryptophan'
1.286261 Supp     b'-1:lemma:mg/l'
1.286110 Air      b'-1:postag::'
1.285298 O        b'+1:lemma:0.2'
1.283404 O        b'-1:lemma:min'
1.283128 pH       b'lemma:.5'
1.283128 pH       b'-1:lemma:ph5'
1.279964 O        b'-1:lemma:acetate'
1.279625 Phase    b'-1:lemma::'
1.278172 O        b'lemma:trpr'
1.275313 Vess     b'+1:postag:IN'
1.274783 O        b'-1:lemma:aerobic'
1.266943 O        b'+1:lemma:or'
1.264739 Supp     b'-1:lemma:final'
1.259781 O        b'lemma:c'
1.257961 pH       b'-1:lemma:ph'
1.256267 Anti     b'-1:lemma:myc'
1.255057 O        b'lemma:input'
1.255057 O        b'+1:lemma:chip-seq'
1.254642 Technique b'-1:lemma:rna-seq'
1.244692 Supp     b'+1:lemma:leucine'
1.240020 Anti     b'lemma:anti-rpob'
1.238445 Supp     b'+1:lemma:1m'
1.238132 O        b'+1:lemma:fnr-8myc'
1.235793 O        b'lemma:oxyr'
1.234467 pH       b'-1:postag:NN'
1.233293 O        b'+1:lemma:20'
1.228358 Supp     b'-1:lemma:mm'
1.226024 Supp     b'-1:lemma:0.2'
1.225115 O        b'-1:lemma:arginine'
1.222277 O        b'+1:lemma:30'
1.219803 Med      b'+1:lemma:supplement'
1.218658 Gtype    b'-1:postag:VBG'
1.213880 O        b'-1:lemma:mg1655'
1.204512 OD       b'lemma:od600'
1.202898 Supp     b'-1:lemma:soxr'
1.202898 Supp     b'-1:lemma:soxs'
1.199605 Med      b'postag:NNS'
1.197117 O        b'lemma:Genome'
1.194555 O        b'+1:lemma:wash'
1.193803 Gtype    b'lemma:wild-type'
1.192503 Technique b'+1:postag:NN'
1.192172 O        b'-1:lemma:l1'
1.184148 Gtype    b'+1:lemma:the'
1.182739 Supp     b'lemma:glutamine'
1.182739 Supp     b'-1:lemma:2g/l'
1.182097 Supp     b'-1:lemma:30'
1.170869 Anti     b'+1:postag:-LRB-'
1.169660 Technique b'-1:lemma:chip-exo'
1.169084 Supp     b'+1:lemma:min'
1.168821 Supp     b'-1:lemma:1m'
1.167093 Gtype    b'-1:lemma:factor'
1.161774 Gtype    b'lemma:flagtag'
1.160346 Technique b'postag:NNP'
1.157696 Air      b'postag:JJ'
1.157422 Anti     b'lemma:anti-rpos'
1.154307 O        b'+1:postag:VBN'
1.154094 Air      b'+1:lemma:at'
1.145688 Air      b'+1:lemma:b'
1.144454 O        b'lemma:,'
1.144454 O        b'postag:,'
1.142015 Supp     b'-1:lemma:\xc2\xb5m'
1.138802 Supp     b'-1:lemma:\xce\xb4ompr'
1.138788 O        b'lemma:ml'
1.137436 Gversion b'-1:lemma:the'
1.137181 O        b'lemma:k-12'
1.132730 Supp     b'postag:NNP'
1.131267 Supp     b'-1:lemma:phosphate'
1.124644 Supp     b'+1:lemma:1/100'
1.119899 Supp     b'lemma:20'
1.116877 Supp     b'lemma:\xc2\xb5m'
1.111803 Air      b'-1:postag:CD'
1.111112 OD       b'+1:postag:JJ'
1.110599 Supp     b'lemma:final'
1.104260 OD       b'+1:lemma:,'
1.104260 OD       b'+1:postag:,'
1.101950 Supp     b'-1:postag:CC'
1.101403 Air      b'-1:postag:NN'
1.100574 Gversion b'+1:postag:CD'
1.100488 Supp     b'-1:lemma:m'
1.099091 Supp     b'lemma:nitrate'
1.097729 Anti     b'lemma:mab'
1.097729 Anti     b'-1:lemma:anti-flag'
1.097564 O        b'+1:postag:VBZ'
1.093575 Med      b'+1:lemma:with'
1.092901 O        b'postag:SYM'
1.087973 Anti     b'-1:postag::'
1.083850 O        b'+1:postag:NNP'
1.083519 Gtype    b'+1:lemma:mg1655'
1.076420 Substrain b'postag:NN'
1.076325 O        b'+1:lemma:nacl'
1.075570 Gtype    b'+1:lemma:ph5'
1.074247 O        b'-1:lemma:fructose'
1.073749 O        b'lemma:agitation'
1.072110 O        b'lemma:or'
1.071703 Supp     b'lemma:30'
1.066588 OD       b'postag:CD'
1.066152 Anti     b'+1:postag:NN'
1.063296 O        b'lemma:2-3'
1.059320 O        b'+1:lemma:tritonx-100'
1.059137 OD       b'+1:lemma:0.3'
1.058426 O        b'lemma:Nac'
1.053006 Anti     b'lemma:anti-flag'
1.053006 Anti     b'+1:lemma:mab'
1.049186 O        b'+1:lemma:acetate'
1.048982 Anti     b'-1:lemma:monoclonal'
1.048611 Med      b'+1:lemma:g/l'
1.046110 Med      b'-1:lemma:LB'
1.045951 Air      b'lemma:co2'
1.045599 Supp     b'+1:lemma:be'
1.045022 O        b'+1:lemma:read'
1.044926 O        b'+1:lemma:aerobically'
1.044814 Phase    b'+1:lemma:culture'
1.041298 Air      b'hLower'
1.040204 O        b'lemma:+'
1.039364 Supp     b'+1:lemma:anaerobically'
1.036844 Supp     b'lemma:cm20'
1.036844 Supp     b'-1:lemma:\xc2\xb5l'
1.027166 Technique b'lemma:ChIPSeq'
1.025573 O        b'+1:lemma:mid-log'
1.025154 Air      b'-1:lemma:cm20'
1.024783 Gtype    b'lemma:the'
1.024021 O        b'-1:lemma:media'
1.023560 O        b'-1:lemma:induce'
1.017060 Anti     b'+1:lemma:from'
1.008111 O        b'-1:lemma:4'
1.007837 Anti     b'-1:postag:JJ'
1.006109 O        b'-1:lemma:shake'
1.005821 Temp     b'lemma:sample'
1.005382 Supp     b'+1:lemma:%'
1.004573 Gversion b'-1:postag:DT'
1.003982 Phase    b'-1:postag::'
1.003167 Anti     b'lemma:tag'
0.999655 Gtype    b'lemma:fur-8myc'
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0.939725 O        b'-1:lemma:grow'
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0.889323 O        b'lemma:lrp'
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0.001647 O        b'-1:lemma:element'
0.001608 O        b'lemma:&'
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0.000432 O        b'-1:lemma:unit'
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0.000281 O        b'lemma:preclear'
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