report_Run16_v11.txt 36.8 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.1798029198603876, 'c2': 0.019328673916692077}
best CV score:0.856091701330711
model size: 0.12M

Flat F1: 0.8131463230246172
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      1.000     0.800     0.889        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.860     0.420     0.565        88
       Anti      0.929     1.000     0.963        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.910     0.782     0.841        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.864     0.838     0.851       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.905     0.756     0.813       484


Top likely transitions:
Temp   -> Temp    5.894679
Med    -> Med     5.605644
Anti   -> Anti    5.331712
OD     -> OD      5.271707
Supp   -> Supp    5.100289
Phase  -> Phase   4.860770
Gversion -> Gversion 4.565037
Gtype  -> Gtype   4.294097
Technique -> Technique 4.272117
Air    -> Air     3.629990
pH     -> pH      3.327691
O      -> O       2.516378
Agit   -> Agit    2.052275
Substrain -> Gtype   1.683482
Gtype  -> Supp    0.759984
Technique -> Air     0.680984
O      -> Technique 0.252434
Temp   -> O       0.087165
Supp   -> O       0.060362
O      -> Supp    0.055636
Phase  -> O       -0.000062
OD     -> O       -0.000094
O      -> Gversion -0.002695
Air    -> O       -0.003204
O      -> Gtype   -0.031004
Technique -> O       -0.078864
Gtype  -> Temp    -0.279842
Med    -> O       -0.292838
O      -> OD      -0.322496
O      -> Temp    -0.502297
OD     -> Air     -0.515751
O      -> Med     -0.574820
O      -> Anti    -0.837427
Technique -> pH      -1.029202
Substrain -> O       -1.178998
Med    -> Supp    -1.231608
Gtype  -> O       -1.391056
O      -> Air     -1.999545


Top unlikely transitions:
Temp   -> Temp    5.894679
Med    -> Med     5.605644
Anti   -> Anti    5.331712
OD     -> OD      5.271707
Supp   -> Supp    5.100289
Phase  -> Phase   4.860770
Gversion -> Gversion 4.565037
Gtype  -> Gtype   4.294097
Technique -> Technique 4.272117
Air    -> Air     3.629990
pH     -> pH      3.327691
O      -> O       2.516378
Agit   -> Agit    2.052275
Substrain -> Gtype   1.683482
Gtype  -> Supp    0.759984
Technique -> Air     0.680984
O      -> Technique 0.252434
Temp   -> O       0.087165
Supp   -> O       0.060362
O      -> Supp    0.055636
Phase  -> O       -0.000062
OD     -> O       -0.000094
O      -> Gversion -0.002695
Air    -> O       -0.003204
O      -> Gtype   -0.031004
Technique -> O       -0.078864
Gtype  -> Temp    -0.279842
Med    -> O       -0.292838
O      -> OD      -0.322496
O      -> Temp    -0.502297
OD     -> Air     -0.515751
O      -> Med     -0.574820
O      -> Anti    -0.837427
Technique -> pH      -1.029202
Substrain -> O       -1.178998
Med    -> Supp    -1.231608
Gtype  -> O       -1.391056
O      -> Air     -1.999545


Top positive:
6.025331 Anti     b'-2:lemma:antibody'
4.843049 O        b'-2:lemma:_'
4.528193 Gtype    b'hGreek'
4.212102 Phase    b'-2:lemma:phase'
3.999620 Gtype    b'-2:lemma:genotype/variation'
3.806595 O        b'lemma:_'
3.806595 O        b'word:_'
3.647684 Air      b'word:Aerobic'
3.610689 Med      b'word:LB'
3.562760 Air      b'lemma:anaerobic'
3.414760 Supp     b'-2:lemma:shake'
3.311045 Supp     b'lemma:nh4cl'
3.272248 Air      b'word:Anaerobic'
3.210652 O        b'postag::'
3.161753 Gtype    b'word:WT'
3.119369 O        b'postag:VBG'
3.062441 Gtype    b'lemma:type'
3.062441 Gtype    b'word:type'
3.006291 Gtype    b'-2:lemma:genotype'
2.996675 Gtype    b'lemma:wt'
2.946252 O        b'word:Cra'
2.930952 O        b'lemma:1'
2.930952 O        b'word:1'
2.909954 O        b'+2:lemma:\xc2\xb0c'
2.821472 Technique b'word:ChIPSeq'
2.764657 O        b'-1:postag:NNS'
2.647367 O        b'lemma:3'
2.647367 O        b'word:3'
2.608238 O        b'lemma:2'
2.608238 O        b'word:2'
2.585122 O        b'lemma:-'
2.585122 O        b'word:-'
2.540007 Gtype    b'-1:ner:GEN'
2.524802 Supp     b'lemma:pq'
2.524802 Supp     b'word:PQ'
2.462393 O        b'-1:lemma:lb'
2.447652 Technique b'word:ChIP-exo'
2.408749 Supp     b'lemma:no3'
2.408749 Supp     b'word:NO3'
2.399774 Technique b'lemma:chipseq'
2.394070 pH       b'+1:postag:CD'
2.393146 Gtype    b'-2:lemma:affyexp'
2.323897 Supp     b'lemma:Iron'
2.323897 Supp     b'word:Iron'
2.323897 Supp     b'+1:word:Deficient'
2.323897 Supp     b'-2:lemma:Anaerobic'
2.311576 Med      b'lemma:MOPS'
2.311576 Med      b'word:MOPS'
2.282741 O        b'lemma:.'
2.282741 O        b'postag:.'
2.282741 O        b'word:.'
2.281191 Supp     b'-1:ner:SUPP'
2.278020 Air      b'postag:RB'
2.266433 Substrain b'-2:lemma:substr'
2.257404 Strain   b'lemma:k-12'
2.257404 Strain   b'word:K-12'
2.232254 Supp     b'+1:lemma:\xc2\xb5m'
2.232254 Supp     b'+1:word:\xc2\xb5M'
2.203650 Technique b'hUpper'
2.202562 O        b'word:A'
2.196220 Gtype    b'+1:lemma:type'
2.196220 Gtype    b'+1:word:type'
2.169024 O        b'postag:IN'
2.168714 Phase    b'postag:NN'
2.167308 O        b'-2:lemma:flagtag'
2.156203 Phase    b'lemma:mid-log'
2.156203 Phase    b'word:mid-log'
2.061156 Technique b'+2:lemma:ph5'
2.057176 Supp     b'+2:lemma:rifampicin'
2.033725 Technique b'word:ChIP-Seq'
2.023958 O        b'+2:lemma:crp'
2.007848 Supp     b'+2:lemma:iptg'
2.003364 O        b'-2:lemma:fructose'
1.982024 Supp     b'-2:lemma:media'
1.895666 Air      b'-2:lemma:IP'
1.894851 Supp     b'lemma:arginine'
1.887843 Gversion b'lemma:chip-seq'
1.887420 Supp     b'lemma:2h'
1.887420 Supp     b'-1:lemma:additional'
1.887420 Supp     b'word:2h'
1.887420 Supp     b'-1:word:additional'
1.859293 O        b'-1:lemma:tag'
1.840121 O        b'lemma:with'
1.840121 O        b'word:with'
1.833575 Air      b'lemma:aerobic'
1.793110 O        b'-2:lemma:myc'
1.790509 Gversion b'word:ChIP-Seq'
1.789751 O        b'-1:word:Anaerobic'
1.782246 Technique b'lemma:rna-seq'
1.776158 O        b'+1:postag:RB'
1.745351 O        b'lemma:b'
1.745351 O        b'word:B'
1.739404 O        b'-1:word:Aerobic'
1.726250 Gtype    b'lemma:pk4854'
1.726250 Gtype    b'word:PK4854'
1.725739 O        b'lemma:rpob'
1.725739 O        b'word:RpoB'
1.712847 Substrain b'lemma:mg1655'
1.712847 Substrain b'word:MG1655'
1.692816 Supp     b'lemma:nacl'
1.692816 Supp     b'word:NaCl'
1.684586 O        b'lemma:at'
1.677842 Supp     b'-2:lemma:induce'
1.671094 Gtype    b'-2:lemma:delta'
1.644346 O        b'-1:word:tag'
1.624386 Supp     b'lemma:iptg'
1.624386 Supp     b'word:IPTG'
1.620409 O        b'postag:VBN'
1.618807 Med      b'+2:postag:CC'
1.577040 Air      b'-2:lemma:fnr'
1.556901 Med      b'isUpper'
1.555721 Temp     b'+1:lemma:\xc2\xb0c'
1.555721 Temp     b'+1:word:\xc2\xb0C'
1.521184 Temp     b'-1:word:sample'
1.512377 Gtype    b'postag:JJ'
1.494128 Technique b'-2:lemma:wt'
1.491761 Med      b'-2:postag:JJ'
1.489793 Gtype    b'lemma:dfnr'
1.489793 Gtype    b'word:dFNR'
1.486790 pH       b'lemma:ph5'
1.486790 pH       b'+1:lemma:.5'
1.486790 pH       b'word:pH5'
1.486790 pH       b'+1:word:.5'
1.486293 Temp     b'-1:lemma:sample'
1.461315 Gtype    b'lemma:\xe2\x88\x86'
1.461315 Gtype    b'word:\xe2\x88\x86'
1.452603 Supp     b'lemma:Adenine'
1.452603 Supp     b'word:Adenine'
1.441900 Air      b'-1:lemma:-'
1.441900 Air      b'-1:word:-'
1.438297 Gtype    b'lemma:wild-type'
1.437892 Supp     b'-1:word:Cra'
1.429343 O        b'postag:CC'
1.397129 O        b'+1:word:ChIP-Seq'
1.395933 Air      b'word:anaerobic'
1.394424 O        b'-2:lemma:medium'
1.380301 O        b'-2:ner:MED'
1.376916 Substrain b'+1:lemma:phtpg'
1.376916 Substrain b'+1:word:PhtpG'
1.368812 Air      b'postag:JJ'
1.360537 Gtype    b'-1:lemma:\xe2\x88\x86'
1.360537 Gtype    b'-1:word:\xe2\x88\x86'
1.337072 O        b'lemma:chip'
1.335527 Vess     b'lemma:flask'
1.335527 Vess     b'-1:lemma:warm'
1.335527 Vess     b'word:flask'
1.335527 Vess     b'-1:word:warmed'
1.335527 Vess     b'-2:lemma:pre'
1.335527 Vess     b'+2:lemma:43'
1.331089 Air      b'lemma:anaeroibc'
1.331089 Air      b'word:Anaeroibc'
1.329051 Gversion b'-2:lemma:build'
1.323685 O        b'-2:lemma:overnight'
1.312482 Air      b'lemma:aerobically'
1.312482 Air      b'word:aerobically'
1.311678 Anti     b'-2:lemma:polymerase'
1.306195 Med      b'+2:lemma:b2'
1.304914 Supp     b'-2:lemma:for'
1.293043 O        b'-1:lemma:type'
1.293043 O        b'-1:word:type'
1.275705 O        b'+1:word:WT'
1.274070 Supp     b'lemma:acetate'
1.274070 Supp     b'word:acetate'
1.269412 Supp     b'-2:postag:VBG'
1.266699 Supp     b'-1:lemma:with'
1.266699 Supp     b'-1:word:with'
1.263100 Med      b'+2:lemma:+'
1.259112 O        b'+1:ner:MED'
1.258205 Gversion b'-2:postag:VB'
1.257416 Supp     b'-1:lemma:Cra'
1.248643 O        b'+1:lemma:wt'
1.243362 Gtype    b'+1:postag::'
1.230541 Technique b'lemma:rnaseq'
1.230541 Technique b'word:RNASeq'
1.223049 O        b'-2:lemma:='
1.218330 Agit     b'lemma:rpm'
1.218330 Agit     b'word:rpm'
1.215371 Supp     b'lemma:fructose'
1.215371 Supp     b'word:fructose'
1.214907 O        b'+1:postag:NNP'
1.213851 Phase    b'-1:lemma:mid-log'
1.213851 Phase    b'-1:word:mid-log'
1.207692 Gtype    b'-1:lemma:nsrr'
1.207692 Gtype    b'+1:lemma:flagtag'
1.207692 Gtype    b'-1:word:NsrR'
1.207692 Gtype    b'+1:word:Flagtag'
1.203805 Supp     b'-1:postag:CD'
1.201238 Supp     b'-2:lemma:20'
1.199941 O        b'lemma:rep2'
1.199941 O        b'word:rep2'
1.199941 O        b'lemma:rep1'
1.199941 O        b'word:rep1'
1.199728 O        b'-1:lemma:ChIP-exo'
1.181181 Med      b'lemma:m63'
1.181181 Med      b'word:M63'
1.179795 Gtype    b'-1:postag:VBG'
1.172875 Temp     b'-1:lemma:37'
1.172875 Temp     b'-1:word:37'
1.161253 Med      b'lemma:minimal'
1.161253 Med      b'word:minimal'
1.160730 O        b'lemma::'
1.160730 O        b'word::'
1.160144 O        b'lemma:harbor'
1.160144 O        b'word:harboring'
1.159746 Agit     b'-1:lemma:250'
1.159746 Agit     b'-1:word:250'
1.153816 Air      b'-2:lemma:%'
1.151830 Technique b'lemma:ChIP-exo'
1.142764 Supp     b'+2:lemma:-lrb-'
1.137317 Gtype    b'hUpper'
1.137128 O        b'+2:postag:JJ'
1.133358 Supp     b'-2:lemma:argr'
1.129484 Air      b'-2:lemma:0.3'
1.125507 O        b'lemma:culture'
1.125344 Temp     b'lemma:43'
1.125344 Temp     b'word:43'
1.120219 OD       b'postag:CD'
1.117240 Supp     b'+1:lemma:1'
1.117240 Supp     b'+1:word:1'
1.112578 Anti     b'+1:lemma:antibody'
1.112578 Anti     b'+1:word:antibody'
1.094993 O        b'lemma:genotype/variation'
1.094993 O        b'word:genotype/variation'
1.091036 Med      b'+1:lemma:0.4'
1.091036 Med      b'+1:word:0.4'
1.089021 OD       b'-1:postag:IN'
1.086805 Gtype    b'+2:lemma:glucose'
1.082711 O        b'lemma:\xcf\x8332'
1.082711 O        b'word:\xcf\x8332'
1.082009 O        b'+1:lemma:fnr-8myc'
1.082009 O        b'+1:word:Fnr-8myc'
1.077988 O        b'+1:lemma:pq'
1.077988 O        b'+1:word:PQ'
1.075989 Supp     b'+1:lemma:2'
1.075989 Supp     b'+1:word:2'
1.074268 O        b'+1:lemma:coli'
1.074268 O        b'+1:word:coli'
1.069607 O        b'-1:lemma:0.3'
1.069607 O        b'-1:word:0.3'
1.063085 O        b'symb'
1.057063 Air      b'-1:lemma:ChIP-Seq'
1.057063 Air      b'-1:word:ChIP-Seq'
1.054009 Technique b'-1:lemma:_'
1.054009 Technique b'-1:word:_'
1.053582 Agit     b'+2:lemma:at'
1.050815 Air      b'-2:lemma:cm20'
1.049672 Temp     b'lemma:37'
1.049672 Temp     b'word:37'
1.046990 O        b'-1:lemma:glucose'
1.046990 O        b'-1:word:glucose'
1.045502 Supp     b'+2:lemma:feso4'
1.042225 Supp     b'lemma:Leu'
1.042225 Supp     b'word:Leu'
1.042225 Supp     b'-2:lemma:Lrp'
1.041199 O        b'-1:lemma:\xc2\xb0c'
1.041199 O        b'-1:word:\xc2\xb0C'
1.039807 OD       b'+1:postag:IN'
1.038632 Med      b'lemma:LB'
1.037546 Med      b'+2:lemma:b1'
1.036062 O        b'word:OmpR'
1.031521 Supp     b'postag:NNP'
1.026276 Gversion b'lemma:u00096'
1.026276 Gversion b'+1:lemma:.2'
1.026276 Gversion b'word:U00096'
1.026276 Gversion b'+1:word:.2'
1.023994 OD       b'+1:lemma:of'
1.023994 OD       b'+1:word:of'
1.019816 Gtype    b'+2:postag::'
1.000470 Supp     b'lemma:dpd'
1.000470 Supp     b'word:DPD'
0.998805 Supp     b'-1:lemma:+'
0.998805 Supp     b'-1:word:+'
0.992225 Phase    b'-2:lemma:until'
0.991636 Med      b'lemma:media'
0.991636 Med      b'word:media'
0.988611 O        b'lemma:CEL'
0.988611 O        b'word:CEL'
0.984757 O        b'-2:lemma:250'
0.981558 Supp     b'+1:word:was'
0.978919 OD       b'+2:lemma:0.3'
0.978703 O        b'lemma:a'
0.971932 Supp     b'-1:postag:IN'
0.969746 Technique b'-2:postag:NNP'
0.959119 O        b'+2:ner:_'
0.958226 O        b'+1:postag:VBN'
0.956410 Gversion b'+1:postag:CD'
0.956124 Temp     b'-1:lemma:43'
0.956124 Temp     b'-1:word:43'
0.955097 O        b'isLower'
0.952017 Vess     b'-1:postag:VBN'
0.946827 Anti     b'+2:lemma:antibody'
0.944126 Gtype    b'hLower'
0.943091 O        b'-2:lemma:ChIP-Seq'
0.942444 Gtype    b'-2:postag:JJ'
0.939533 O        b'lemma:Cra'
0.921419 Temp     b'lemma:\xc2\xb0c'
0.921419 Temp     b'word:\xc2\xb0C'
0.921202 Substrain b'lemma:mg1655star'
0.921202 Substrain b'word:MG1655star'
0.920781 Gtype    b'lemma:arca8myc'
0.920781 Gtype    b'word:ArcA8myc'
0.920781 Gtype    b'-2:lemma:chip-arca'
0.909353 O        b'+1:lemma:od600'
0.909353 O        b'+1:word:OD600'
0.904423 OD       b'lemma:0.3'
0.904423 OD       b'word:0.3'
0.898756 Supp     b'lemma:glucose'
0.898756 Supp     b'word:glucose'
0.898297 O        b'+1:word:were'
0.896476 OD       b'lemma:od450'
0.896476 OD       b'word:OD450'
0.896476 OD       b'-1:word:At'
0.894255 Supp     b'lemma:Fe'
0.894255 Supp     b'word:Fe'
0.893393 Substrain b'-1:lemma:.'
0.893393 Substrain b'-1:postag:.'
0.893393 Substrain b'-1:word:.'
0.891302 Air      b'-1:lemma:co2'
0.891302 Air      b'-1:word:CO2'
0.891109 Supp     b'-2:lemma:pahse'
0.886129 Agit     b'+1:lemma:rpm'
0.886129 Agit     b'+1:word:rpm'
0.884768 O        b'-1:lemma:mg1655'
0.884768 O        b'-1:word:MG1655'
0.884652 O        b'lemma:purr'
0.884652 O        b'word:PurR'
0.880965 O        b'lemma:ompr'
0.878465 O        b'+1:lemma:\xe2\x88\x86'
0.878465 O        b'+1:word:\xe2\x88\x86'
0.872602 O        b'-1:lemma:anaerobic'
0.872584 Temp     b'-2:lemma:\xcf\x8332'
0.861168 Med      b'-2:lemma:minimal'
0.860985 O        b'-1:word:ChIP-exo'
0.854253 Supp     b'-1:lemma:_'
0.854253 Supp     b'-1:word:_'
0.850647 Gtype    b'-1:postag:VBP'
0.846491 Gversion b'postag:NN'
0.844237 Strain   b'+1:lemma:substr'
0.844237 Strain   b'+1:word:substr'
0.844237 Strain   b'-2:lemma:str'
0.842247 Supp     b'-2:lemma:supplement'
0.835545 Gversion b'lemma:.2'
0.835545 Gversion b'-1:lemma:u00096'
0.835545 Gversion b'word:.2'
0.835545 Gversion b'-1:word:U00096'
0.833299 O        b'-2:lemma:min'
0.828321 O        b'hLower'
0.827784 Substrain b'+2:lemma::'
0.826756 O        b'+1:lemma:250'
0.826756 O        b'+1:word:250'
0.823268 Temp     b'-1:lemma:\xcf\x8332'
0.823268 Temp     b'-1:word:\xcf\x8332'
0.823150 Temp     b'-2:lemma:keep'
0.823013 Gtype    b'lemma:\xce\xb4fur'
0.823013 Gtype    b'word:\xce\x94fur'
0.822775 O        b'-2:lemma:co2'
0.822449 Gversion b'lemma:000913'
0.822449 Gversion b'word:000913'
0.822449 Gversion b'-2:lemma:nc'
0.818483 O        b'-1:lemma:-80'
0.818483 O        b'-1:word:-80'
0.814988 Gtype    b'+1:word:the'
0.812364 O        b'lemma:-lrb-'
0.812364 O        b'word:-LRB-'
0.809067 Gtype    b'lemma:deltaseqa'
0.809067 Gtype    b'-1:lemma:old'
0.809067 Gtype    b'word:deltaSeqA'
0.809067 Gtype    b'-1:word:old'
0.809067 Gtype    b'-2:lemma:seqa'
0.808309 O        b'+2:lemma:fructose'
0.807118 Agit     b'lemma:250'
0.807118 Agit     b'word:250'
0.807066 Gversion b'-1:lemma:nc'
0.807066 Gversion b'+1:lemma:000913'
0.807066 Gversion b'-1:word:NC'
0.807066 Gversion b'+1:word:000913'
0.804354 Supp     b'-1:postag:CC'
0.802922 Phase    b'+2:lemma:o.d.'
0.801930 Gtype    b'-1:lemma:rpob'
0.801930 Gtype    b'-1:word:RpoB'
0.801562 O        b'+1:lemma:0.2'
0.801562 O        b'+1:word:0.2'
0.794974 Air      b'+2:lemma:%'
0.792385 Med      b'-2:lemma:fresh'
0.790458 O        b'-1:lemma:nacl'
0.790458 O        b'-1:word:NaCl'
0.790291 O        b'-1:lemma:antibody'
0.790291 O        b'-1:word:antibody'
0.786617 Gtype    b'+1:lemma:the'
0.785967 O        b'word:C'
0.777843 O        b'+2:lemma:of'
0.768783 Supp     b'+2:postag:IN'
0.765396 Technique b'hLower'
0.764034 Phase    b'isLower'
0.757060 Gtype    b'+2:ner:SUPP'
0.755746 O        b'lemma:chip-fnr'
0.755746 O        b'word:chip-Fnr'
0.755746 O        b'+2:lemma:fnr8myc'
0.754025 O        b'-2:lemma:twice'
0.751745 O        b'isUpper'
0.747191 Med      b'+2:lemma:then'
0.747127 Supp     b'-1:lemma:vol'
0.747127 Supp     b'-1:word:vol'
0.747127 Supp     b'-2:lemma:1/100'
0.747127 Supp     b'+2:lemma:1m'
0.747031 Gtype    b'-2:lemma:ecolus'
0.745780 Technique b'lemma:ChIP-Seq'
0.743214 Technique b'-1:lemma:IP'
0.743214 Technique b'-1:word:IP'
0.743119 Gtype    b'lemma:nsrr'
0.743119 Gtype    b'word:NsrR'
0.743119 Gtype    b'+2:lemma:flagtag'
0.739250 Technique b'-2:lemma:Fur'
0.739111 Med      b'-1:lemma:minimal'
0.739111 Med      b'-1:word:minimal'
0.730784 O        b'isNumber'
0.726280 Substrain b'+2:postag::'
0.725885 O        b'+1:lemma:rifampicin'
0.725885 O        b'+1:word:rifampicin'
0.724449 O        b'-2:lemma:in'
0.723085 Gversion b'lemma:asm584v2'
0.723085 Gversion b'word:ASM584v2'
0.721661 O        b'-1:lemma:wt'
0.720598 O        b'-1:lemma:pq'
0.720598 O        b'-1:word:PQ'
0.720377 Air      b'+1:lemma:%'
0.720377 Air      b'+1:word:%'
0.719063 Gtype    b'+2:lemma::'
0.718930 Supp     b'-1:word:OmpR'
0.716293 OD       b'postag:IN'
0.712490 Supp     b'lemma:glutamine'
0.712490 Supp     b'-1:lemma:2g/l'
0.712490 Supp     b'word:glutamine'
0.712490 Supp     b'-1:word:2g/L'
0.710797 Supp     b'lemma:rifampicin'
0.710797 Supp     b'word:rifampicin'
0.709015 O        b'-1:lemma:l1'
0.709015 O        b'-1:word:L1'
0.706367 O        b'postag:NNS'
0.704677 OD       b'lemma:od600'
0.704677 OD       b'word:OD600'
0.702146 Supp     b'+2:lemma:add'
0.700133 Agit     b'-2:lemma:aerobically'
0.697048 Med      b'+1:lemma:-lrb-'
0.697048 Med      b'+1:word:-LRB-'
0.695922 O        b'-1:lemma:min'
0.695922 O        b'-1:word:min'
0.692994 Med      b'postag:NNP'
0.691606 Air      b'-1:lemma:%'
0.691606 Air      b'-1:word:%'
0.689235 Supp     b'+2:postag:-LRB-'
0.688942 pH       b'+1:lemma:5.5'
0.688942 pH       b'+1:word:5.5'
0.687787 Med      b'+1:postag:-LRB-'
0.687647 Supp     b'-2:postag:CD'
0.686874 Supp     b'+1:lemma:_'
0.686874 Supp     b'+1:word:_'
0.685944 Supp     b'+1:word:hours'
0.681884 O        b'+2:lemma:constant'
0.681235 Gtype    b'-2:lemma:the'
0.677213 Med      b'lemma:medium'
0.677213 Med      b'word:medium'
0.674442 Gversion b'-2:lemma:genome'
0.674287 Air      b'lemma:%'
0.674287 Air      b'word:%'
0.673348 O        b'word:Lrp'
0.673249 Supp     b'symb'
0.673152 Supp     b'lemma:20'
0.673152 Supp     b'word:20'
0.672966 Gtype    b'-1:lemma:wild'
0.672966 Gtype    b'-1:word:wild'
0.672835 Gtype    b'+1:lemma:_'
0.672835 Gtype    b'+1:word:_'
0.672394 O        b'lemma:chip-arca'
0.672394 O        b'word:chip-ArcA'
0.672394 O        b'+2:lemma:arca8myc'
0.669839 Phase    b'lemma:phase'
0.669839 Phase    b'word:phase'
0.668787 OD       b'-2:lemma:phase'
0.666143 O        b'lemma:trpr'
0.666143 O        b'word:TrpR'
0.664525 Air      b'-2:lemma:nh4cl'
0.658483 Supp     b'-2:lemma:10'
0.655734 Gtype    b'+2:postag:NN'
0.653399 Gtype    b'-1:lemma:vector'
0.653399 Gtype    b'-1:word:vector'
0.653291 Med      b'+2:ner:_'
0.650270 Agit     b'-2:postag:RB'
0.649721 Med      b'+1:lemma:supplement'
0.649721 Med      b'+1:word:supplemented'
0.645664 Gversion b'lemma:nc'
0.645664 Gversion b'word:NC'
0.645664 Gversion b'+2:lemma:000913'
0.645444 O        b'+1:postag:VBZ'
0.643423 O        b'lemma:,'
0.643423 O        b'postag:,'
0.643423 O        b'word:,'
0.643043 Med      b'-1:postag:JJ'
0.642087 Med      b'+1:lemma:2.0'
0.642087 Med      b'+1:word:2.0'


Top negative:
0.000015 Gtype    b'-1:lemma:pk4854'
0.000015 Gtype    b'-1:word:PK4854'
0.000010 O        b'+2:lemma:for'
0.000008 O        b'+1:lemma:tritonx-100'
0.000008 O        b'+1:word:TritonX-100'
0.000007 pH       b'+1:ner:_'
0.000007 O        b'+1:lemma:for'
0.000006 Med      b'+1:postag:NNS'
0.000004 O        b'lemma:\xc2\xb0c'
0.000004 O        b'word:\xc2\xb0C'
0.000003 Supp     b'-1:lemma:\xce\xb4cra'
0.000003 Supp     b'-1:word:\xce\x94cra'
0.000003 O        b'+1:word:for'
0.000001 Med      b'-2:lemma:g/l'
0.000000 Phase    b'-2:postag:VBN'
-0.000000 O        b'+2:lemma:antibody'
0.000000 Gtype    b'+2:postag:DT'
-0.000001 Med      b'-1:postag:CD'
-0.000001 O        b'+2:lemma:rna'
-0.000002 Supp     b'+1:lemma:um'
-0.000002 Supp     b'+1:word:uM'
-0.000003 O        b'+1:lemma:~'
-0.000003 O        b'+1:word:~'
-0.000006 Supp     b'lemma:250'
-0.000006 Supp     b'word:250'
-0.000011 O        b'-2:lemma:cell'
-0.000012 O        b'+1:lemma:mm'
-0.000012 O        b'+1:word:mM'
-0.000012 O        b'+1:ner:KWSUPP'
-0.000012 Supp     b'-2:lemma:treat'
-0.000013 Med      b'-2:postag:IN'
-0.000028 Supp     b'lemma:um'
-0.000028 Supp     b'word:uM'
-0.000028 Supp     b'+2:lemma:paraquat'
-0.000031 Air      b'-1:word:grown'
-0.000034 O        b'+1:lemma:contain'
-0.000034 O        b'+1:word:containing'
-0.000055 O        b'-1:word:an'
-0.000074 O        b'-2:postag:-RRB-'
-0.000082 O        b'-2:postag:IN'
-0.000140 Air      b'lemma:-lrb-'
-0.000140 Air      b'word:-LRB-'
-0.000175 Phase    b'-2:postag:NN'
-0.000181 O        b'+1:lemma:the'
-0.000182 O        b'+1:word:the'
-0.000259 Anti     b'postag:NNP'
-0.000362 O        b'-1:lemma:g/l'
-0.000362 O        b'-1:word:g/L'
-0.000370 OD       b'isNumber'
-0.000386 O        b'-1:postag:VBG'
-0.000397 O        b'+2:lemma:m9'
-0.000433 Air      b'postag:-LRB-'
-0.000447 O        b'-2:lemma:mm'
-0.000447 O        b'-2:ner:KWSUPP'
-0.000476 Air      b'-1:lemma:aerobically'
-0.000476 Air      b'-1:word:aerobically'
-0.000579 Med      b'-1:postag:IN'
-0.000623 O        b'-2:postag:SYM'
-0.000628 Air      b'lemma:,'
-0.000628 Air      b'postag:,'
-0.000628 Air      b'word:,'
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-0.000732 O        b'-2:lemma:%'
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-0.000818 Med      b'-1:lemma:m63'
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-0.000818 O        b'-2:lemma:25'
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-0.001244 O        b'+1:lemma:a'
-0.001257 Air      b'+2:lemma:,'
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-0.001338 Med      b'+1:postag:CC'
-0.001529 Air      b'+2:lemma:70'
-0.001617 Air      b'-2:postag:VBD'
-0.001683 O        b'-2:lemma:\xc2\xb0c'
-0.001891 OD       b'-1:ner:_'
-0.002283 Air      b'-2:lemma:be'
-0.002412 O        b'-1:lemma:IP'
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-0.002764 O        b'+2:lemma:%'
-0.002911 OD       b'+2:postag:CC'
-0.003132 Air      b'-2:lemma:-lrb-'
-0.003156 O        b'-1:lemma:mm'
-0.003156 O        b'-1:word:mM'
-0.003585 Air      b'-2:postag:-LRB-'
-0.003607 O        b'-2:lemma:5'
-0.004120 Med      b'+2:lemma:medium'
-0.004439 O        b'-1:lemma:ml'
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-0.004624 Gtype    b'-1:lemma:mg1655'
-0.004624 Gtype    b'-1:word:MG1655'
-0.005025 Supp     b'lemma:mm'
-0.005025 Supp     b'word:mM'
-0.005025 Supp     b'-1:ner:KWSUPP'
-0.005127 Air      b'-1:postag:-LRB-'
-0.005133 Gtype    b'-1:postag:NN'
-0.005234 O        b'lemma:mm'
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-0.005921 O        b'+1:word:a'
-0.006124 Supp     b'hLower'
-0.006990 Air      b'-2:lemma:and'
-0.007189 O        b'+1:lemma:media'
-0.007189 O        b'+1:word:media'
-0.008241 O        b'+2:postag:IN'
-0.008437 O        b'-1:ner:GEN'
-0.008735 Supp     b'+2:lemma:dpd'
-0.008980 Air      b'-2:postag:VBN'
-0.009790 O        b'+1:lemma:ph'
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-0.010110 Supp     b'+1:lemma:-rrb-'
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-0.010130 O        b'-1:word:ml'
-0.010134 O        b'-2:lemma:phase'
-0.011287 O        b'-1:lemma:a'
-0.012292 Supp     b'+2:lemma:acetate'
-0.013512 Med      b'postag:CD'
-0.014115 O        b'-1:lemma:rpob'
-0.014115 O        b'-1:word:RpoB'
-0.014282 Supp     b'postag:IN'
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-0.016964 O        b'-1:lemma:.'
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-0.017808 O        b'-1:lemma:phosphate'
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-0.026402 O        b'-1:ner:MED'
-0.026969 O        b'+1:lemma:1/100'
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-0.026969 O        b'-2:lemma:sodium'
-0.026969 O        b'+2:lemma:vol'
-0.029396 O        b'+1:lemma:be'
-0.032575 O        b'-1:lemma:iptg'
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-0.032685 O        b'+2:lemma:fecl2'
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-0.035289 O        b'lemma:glucose'
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-0.036187 Supp     b'lemma:.'
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-0.040014 Temp     b'+1:postag:IN'
-0.040102 O        b'+1:lemma:300'
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-0.040610 Supp     b'-1:word:DPD'
-0.044000 Supp     b'+1:lemma:acetate'
-0.044000 Supp     b'+1:word:acetate'
-0.046214 Temp     b'+2:postag:IN'
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-0.073771 O        b'+2:lemma:nitrate'
-0.074583 O        b'lemma:150'
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