report_Run12_v12.txt 39.2 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.024526019449188374, 'c2': 0.013240429729734052}
best CV score:0.8305332917162109
model size: 0.15M

Flat F1: 0.8101294762025038
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.900     0.409     0.563        88
       Anti      0.684     1.000     0.813        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.952     0.769     0.851        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.877     0.838     0.857       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.912     0.752     0.810       484


Top likely transitions:
Anti   -> Anti    6.196201
Gtype  -> Gtype   5.971826
Temp   -> Temp    5.602427
Phase  -> Phase   5.478050
Med    -> Med     4.990533
Supp   -> Supp    4.860006
OD     -> OD      4.507573
Technique -> Technique 4.157633
Gversion -> Gversion 4.004063
Air    -> Air     3.711834
O      -> O       3.321618
pH     -> pH      3.276264
Agit   -> Agit    2.443270
Substrain -> Gtype   1.658720
Technique -> Air     1.256833
O      -> Gtype   0.620404
Gtype  -> Supp    0.603824
Gtype  -> pH      0.561738
O      -> Technique 0.382606
Gtype  -> Air     0.119571
O      -> Strain  0.001404
Strain -> O       0.001110
Anti   -> O       0.000010
Gtype  -> OD      -0.000019
O      -> Substrain -0.002313
O      -> pH      -0.004626
Air    -> Technique -0.007039
Supp   -> Gtype   -0.011314
pH     -> O       -0.037557
Supp   -> Air     -0.079655
Gtype  -> Technique -0.090677
O      -> Agit    -0.093549
Anti   -> Med     -0.099533
Anti   -> Supp    -0.112127
Technique -> OD      -0.115003
Supp   -> OD      -0.123066
Gtype  -> Temp    -0.123534
Phase  -> Air     -0.125463
O      -> Phase   -0.147463
Supp   -> Anti    -0.154103
Phase  -> Med     -0.158384
Gversion -> Air     -0.173443
Air    -> OD      -0.179575
Med    -> Technique -0.180345
Air    -> O       -0.205309
OD     -> Med     -0.239451
O      -> Temp    -0.242615
Agit   -> Air     -0.245968
Technique -> O       -0.247292
Supp   -> Temp    -0.266321
Phase  -> Technique -0.300645
Anti   -> Phase   -0.315484
pH     -> Supp    -0.317780
OD     -> O       -0.350213
Air    -> Temp    -0.352960
Gtype  -> Gversion -0.355319
Med    -> OD      -0.363540
Temp   -> O       -0.374423
Temp   -> Air     -0.405388
Phase  -> Supp    -0.406410
Technique -> Gtype   -0.496314
O      -> Supp    -0.508906
Supp   -> O       -0.532747
O      -> Gversion -0.538591
Anti   -> Temp    -0.550411
OD     -> Supp    -0.598183
Gversion -> O       -0.604723
Gversion -> Supp    -0.619279
O      -> Anti    -0.655752
Gtype  -> Med     -0.657799
OD     -> Air     -0.696954
Air    -> Agit    -0.712552
Air    -> Phase   -0.715453
Gtype  -> Anti    -0.799084
Temp   -> Med     -0.952393
Med    -> O       -0.963391
Phase  -> OD      -0.983279
Air    -> Supp    -1.171898
Gtype  -> O       -1.194214
Phase  -> O       -1.199776
Substrain -> O       -1.421561
Technique -> pH      -1.439538
O      -> OD      -1.499128
O      -> Med     -1.592531
Supp   -> Med     -2.505977
O      -> Air     -2.934132
Med    -> Supp    -3.074593


Top unlikely transitions:
Anti   -> Anti    6.196201
Gtype  -> Gtype   5.971826
Temp   -> Temp    5.602427
Phase  -> Phase   5.478050
Med    -> Med     4.990533
Supp   -> Supp    4.860006
OD     -> OD      4.507573
Technique -> Technique 4.157633
Gversion -> Gversion 4.004063
Air    -> Air     3.711834
O      -> O       3.321618
pH     -> pH      3.276264
Agit   -> Agit    2.443270
Substrain -> Gtype   1.658720
Technique -> Air     1.256833
O      -> Gtype   0.620404
Gtype  -> Supp    0.603824
Gtype  -> pH      0.561738
O      -> Technique 0.382606
Gtype  -> Air     0.119571
O      -> Strain  0.001404
Strain -> O       0.001110
Anti   -> O       0.000010
Gtype  -> OD      -0.000019
O      -> Substrain -0.002313
O      -> pH      -0.004626
Air    -> Technique -0.007039
Supp   -> Gtype   -0.011314
pH     -> O       -0.037557
Supp   -> Air     -0.079655
Gtype  -> Technique -0.090677
O      -> Agit    -0.093549
Anti   -> Med     -0.099533
Anti   -> Supp    -0.112127
Technique -> OD      -0.115003
Supp   -> OD      -0.123066
Gtype  -> Temp    -0.123534
Phase  -> Air     -0.125463
O      -> Phase   -0.147463
Supp   -> Anti    -0.154103
Phase  -> Med     -0.158384
Gversion -> Air     -0.173443
Air    -> OD      -0.179575
Med    -> Technique -0.180345
Air    -> O       -0.205309
OD     -> Med     -0.239451
O      -> Temp    -0.242615
Agit   -> Air     -0.245968
Technique -> O       -0.247292
Supp   -> Temp    -0.266321
Phase  -> Technique -0.300645
Anti   -> Phase   -0.315484
pH     -> Supp    -0.317780
OD     -> O       -0.350213
Air    -> Temp    -0.352960
Gtype  -> Gversion -0.355319
Med    -> OD      -0.363540
Temp   -> O       -0.374423
Temp   -> Air     -0.405388
Phase  -> Supp    -0.406410
Technique -> Gtype   -0.496314
O      -> Supp    -0.508906
Supp   -> O       -0.532747
O      -> Gversion -0.538591
Anti   -> Temp    -0.550411
OD     -> Supp    -0.598183
Gversion -> O       -0.604723
Gversion -> Supp    -0.619279
O      -> Anti    -0.655752
Gtype  -> Med     -0.657799
OD     -> Air     -0.696954
Air    -> Agit    -0.712552
Air    -> Phase   -0.715453
Gtype  -> Anti    -0.799084
Temp   -> Med     -0.952393
Med    -> O       -0.963391
Phase  -> OD      -0.983279
Air    -> Supp    -1.171898
Gtype  -> O       -1.194214
Phase  -> O       -1.199776
Substrain -> O       -1.421561
Technique -> pH      -1.439538
O      -> OD      -1.499128
O      -> Med     -1.592531
Supp   -> Med     -2.505977
O      -> Air     -2.934132
Med    -> Supp    -3.074593


Top positive:
5.422462 O        b'lemma:_'
5.422462 O        b'word:_'
4.479972 Gtype    b'word:WT'
4.269271 Gtype    b'hGreek'
4.172382 Air      b'lemma:anaerobic'
4.098261 O        b'word:Cra'
4.052096 Air      b'word:Aerobic'
3.845944 Air      b'lemma:aerobically'
3.845944 Air      b'word:aerobically'
3.810309 Technique b'word:ChIPSeq'
3.577739 Supp     b'lemma:Iron'
3.577739 Supp     b'word:Iron'
3.577739 Supp     b'+1:word:Deficient'
3.567057 Med      b'lemma:MOPS'
3.567057 Med      b'word:MOPS'
3.465466 Air      b'postag:RB'
3.430720 O        b'lemma:-'
3.430720 O        b'word:-'
3.348091 O        b'-1:word:tag'
3.343196 Gtype    b'lemma:wt'
3.342831 O        b'postag:VBG'
3.297118 Supp     b'lemma:pq'
3.297118 Supp     b'word:PQ'
3.257411 O        b'-1:lemma:tag'
3.233088 O        b'-2:ner:MED'
3.217639 Phase    b'lemma:stationary'
3.217639 Phase    b'word:stationary'
3.217639 Phase    b'lemma:exponential'
3.217639 Phase    b'word:exponential'
3.196438 Supp     b'-1:word:Cra'
3.160945 Air      b'word:Anaerobic'
3.130941 Technique b'lemma:chipseq'
3.128707 Supp     b'lemma:nh4cl'
3.071125 Supp     b'lemma:2h'
3.071125 Supp     b'-1:lemma:additional'
3.071125 Supp     b'word:2h'
3.071125 Supp     b'-1:word:additional'
3.030611 O        b'-1:lemma:lb'
2.953963 Air      b'word:anaerobic'
2.931350 O        b'postag::'
2.882217 Supp     b'-1:ner:SUPP'
2.852811 Supp     b'-1:lemma:Cra'
2.843073 Med      b'lemma:LB'
2.817781 O        b'lemma:.'
2.817781 O        b'postag:.'
2.817781 O        b'word:.'
2.815680 Gtype    b'lemma:type'
2.815680 Gtype    b'word:type'
2.798027 Supp     b'+1:lemma:\xc2\xb5m'
2.798027 Supp     b'+1:word:\xc2\xb5M'
2.761939 Phase    b'postag:NN'
2.733339 Gtype    b'-1:ner:GEN'
2.716863 Technique b'word:ChIP-exo'
2.685707 Gversion b'lemma:asm584v2'
2.685707 Gversion b'word:ASM584v2'
2.682665 O        b'+1:postag:VBN'
2.640258 Air      b'postag:JJ'
2.636790 Technique b'lemma:ChIP-exo'
2.628364 O        b'lemma:1'
2.628364 O        b'word:1'
2.578494 Air      b'lemma:aerobic'
2.568575 Supp     b'lemma:no3'
2.568575 Supp     b'word:NO3'
2.558021 O        b'word:OmpR'
2.551469 Strain   b'lemma:k-12'
2.551469 Strain   b'word:K-12'
2.543583 Air      b'-1:lemma:ChIP-Seq'
2.543583 Air      b'-1:word:ChIP-Seq'
2.521637 Med      b'word:LB'
2.499782 O        b'lemma:Cra'
2.468091 O        b'-1:word:Anaerobic'
2.463151 Technique b'word:ChIP-Seq'
2.442498 Supp     b'lemma:arginine'
2.441631 Gversion b'lemma:chip-seq'
2.439812 O        b'lemma:with'
2.439812 O        b'word:with'
2.439752 O        b'lemma:at'
2.367013 Med      b'lemma:minimal'
2.367013 Med      b'word:minimal'
2.364297 Gtype    b'lemma:wildtype'
2.363238 Gversion b'word:ChIP-Seq'
2.346482 Gtype    b'lemma:pk4854'
2.346482 Gtype    b'word:PK4854'
2.318666 O        b'-1:lemma:0.3'
2.318666 O        b'-1:word:0.3'
2.314620 O        b'lemma:b'
2.314620 O        b'word:B'
2.292051 Agit     b'+1:lemma:rpm'
2.292051 Agit     b'+1:word:rpm'
2.288702 O        b'-1:lemma:glucose'
2.288702 O        b'-1:word:glucose'
2.285507 O        b'lemma:2'
2.285507 O        b'word:2'
2.281927 O        b'word:Lrp'
2.280391 Gtype    b'+1:postag::'
2.272853 Supp     b'lemma:iptg'
2.272853 Supp     b'word:IPTG'
2.250317 O        b'-1:postag:NNS'
2.228358 Supp     b'lemma:acetate'
2.228358 Supp     b'word:acetate'
2.219467 Gtype    b'+1:lemma:type'
2.219467 Gtype    b'+1:word:type'
2.185912 Air      b'lemma:anaeroibc'
2.185912 Air      b'word:Anaeroibc'
2.184045 Vess     b'lemma:flask'
2.184045 Vess     b'-1:lemma:warm'
2.184045 Vess     b'word:flask'
2.184045 Vess     b'-1:word:warmed'
2.167185 Technique b'lemma:rnaseq'
2.167185 Technique b'word:RNASeq'
2.165103 O        b'-1:lemma:pq'
2.165103 O        b'-1:word:PQ'
2.157691 Med      b'+1:lemma:0.4'
2.157691 Med      b'+1:word:0.4'
2.134305 O        b'lemma:chip'
2.132108 O        b'+1:postag:RB'
2.131729 Supp     b'+1:lemma:Deficient'
2.126881 O        b'lemma:3'
2.126881 O        b'word:3'
2.100687 Supp     b'-1:lemma:+'
2.100687 Supp     b'-1:word:+'
2.099945 Gtype    b'lemma:dfnr'
2.099945 Gtype    b'word:dFNR'
2.091214 O        b'lemma:chip-arca'
2.091214 O        b'word:chip-ArcA'
2.085705 O        b'lemma:purr'
2.085705 O        b'word:PurR'
2.082093 Med      b'lemma:media'
2.082093 Med      b'word:media'
2.080652 Supp     b'lemma:nacl'
2.080652 Supp     b'word:NaCl'
2.078713 Substrain b'lemma:mg1655'
2.078713 Substrain b'word:MG1655'
2.069144 O        b'lemma:rep2'
2.069144 O        b'word:rep2'
2.069144 O        b'lemma:rep1'
2.069144 O        b'word:rep1'
2.045887 O        b'lemma:for'
2.033779 Supp     b'lemma:rifampicin'
2.033779 Supp     b'word:rifampicin'
2.028947 Air      b'-1:lemma:-'
2.028947 Air      b'-1:word:-'
2.009572 Substrain b'lemma:mg1655star'
2.009572 Substrain b'word:MG1655star'
2.008238 O        b'word:A'
2.004582 O        b'word:C'
2.001156 Med      b'-1:word:ml'
1.996855 Med      b'-1:lemma:ml'
1.996506 Supp     b'lemma:Fe'
1.996506 Supp     b'word:Fe'
1.992102 O        b'lemma:CEL'
1.992102 O        b'word:CEL'
1.989443 Gtype    b'lemma:wild-type'
1.950769 Air      b'-1:lemma:co2'
1.950769 Air      b'-1:word:CO2'
1.941998 O        b'postag:IN'
1.930060 Anti     b'lemma:\xcf\x8332'
1.930060 Anti     b'word:\xcf\x8332'
1.928562 Anti     b'lemma:seqa'
1.928562 Anti     b'word:SeqA'
1.926580 Supp     b'-1:lemma:vol'
1.926580 Supp     b'-1:word:vol'
1.912297 Med      b'+1:lemma:2.0'
1.912297 Med      b'+1:word:2.0'
1.910073 Gtype    b'+2:ner:SUPP'
1.903899 O        b'+1:lemma:od600'
1.903899 O        b'+1:word:OD600'
1.886998 O        b'+1:lemma:pq'
1.886998 O        b'+1:word:PQ'
1.885563 Supp     b'-1:lemma:with'
1.885563 Supp     b'-1:word:with'
1.885119 O        b'lemma:chip-fnr'
1.885119 O        b'word:chip-Fnr'
1.882768 O        b'-1:word:Aerobic'
1.874794 pH       b'lemma:ph5'
1.874794 pH       b'+1:lemma:.5'
1.874794 pH       b'word:pH5'
1.874794 pH       b'+1:word:.5'
1.872335 Supp     b'+1:lemma:iptg'
1.872335 Supp     b'+1:word:IPTG'
1.862553 Supp     b'lemma:Leu'
1.862553 Supp     b'word:Leu'
1.862318 Supp     b'lemma:Adenine'
1.862318 Supp     b'word:Adenine'
1.856279 Supp     b'lemma:dpd'
1.856279 Supp     b'word:DPD'
1.851635 Gtype    b'lemma:arca8myc'
1.851635 Gtype    b'word:ArcA8myc'
1.838500 O        b'lemma:a'
1.831977 O        b'lemma:trpr'
1.831977 O        b'word:TrpR'
1.830913 Agit     b'lemma:rpm'
1.830913 Agit     b'word:rpm'
1.830294 Anti     b'lemma:none'
1.830294 Anti     b'word:none'
1.830002 O        b'+1:lemma:k-12'
1.830002 O        b'+1:word:K-12'
1.818158 O        b'lemma:rpob'
1.818158 O        b'word:RpoB'
1.814334 O        b'-1:lemma:acetate'
1.814334 O        b'-1:word:acetate'
1.814127 O        b'-1:lemma:nacl'
1.814127 O        b'-1:word:NaCl'
1.795832 O        b'lemma::'
1.795832 O        b'word::'
1.793845 Gversion b'lemma:000913'
1.793845 Gversion b'word:000913'
1.775110 Gtype    b'lemma:delta-fnr'
1.775110 Gtype    b'word:delta-fnr'
1.768477 Gtype    b'postag:JJ'
1.757131 Temp     b'lemma:43'
1.757131 Temp     b'word:43'
1.755558 Gversion b'lemma:nc'
1.755558 Gversion b'word:NC'
1.749878 Med      b'lemma:medium'
1.749878 Med      b'word:medium'
1.737984 Strain   b'+1:lemma:substr'
1.737984 Strain   b'+1:word:substr'
1.736244 O        b'+1:lemma:250'
1.736244 O        b'+1:word:250'
1.732644 Gversion b'-1:lemma:nc'
1.732644 Gversion b'+1:lemma:000913'
1.732644 Gversion b'-1:word:NC'
1.732644 Gversion b'+1:word:000913'
1.732275 Technique b'hUpper'
1.731369 Temp     b'-1:word:sample'
1.728199 Agit     b'-1:lemma:250'
1.728199 Agit     b'-1:word:250'
1.724721 Technique b'lemma:rna-seq'
1.720327 O        b'lemma:soxr'
1.720327 O        b'word:SoxR'
1.720327 O        b'lemma:soxs'
1.720327 O        b'word:SoxS'
1.691047 Med      b'-1:lemma:fresh'
1.691047 Med      b'-1:word:fresh'
1.690346 O        b'+1:word:ChIP-Seq'
1.679298 O        b'+1:word:WT'
1.676829 Gtype    b'-1:lemma:\xe2\x88\x86'
1.676829 Gtype    b'-1:word:\xe2\x88\x86'
1.674947 O        b'+1:lemma:wt'
1.673857 Gtype    b'lemma:\xce\xb4fur'
1.673857 Gtype    b'word:\xce\x94fur'
1.673490 O        b'-1:lemma:nh4cl'
1.667812 Supp     b'+1:word:hours'
1.666662 Temp     b'lemma:37'
1.666662 Temp     b'word:37'
1.663585 Phase    b'+1:word:cultures'
1.660763 O        b'lemma:argr'
1.660763 O        b'word:ArgR'
1.648595 Gtype    b'lemma:deltaseqa'
1.648595 Gtype    b'-1:lemma:old'
1.648595 Gtype    b'word:deltaSeqA'
1.648595 Gtype    b'-1:word:old'
1.638627 Vess     b'-1:postag:VBN'
1.632350 Air      b'-1:postag::'
1.624128 O        b'-1:lemma:ChIP-exo'
1.620314 O        b'lemma:\xcf\x8332'
1.620314 O        b'word:\xcf\x8332'
1.619055 O        b'word:for'
1.612555 O        b'-1:lemma:fructose'
1.612555 O        b'-1:word:fructose'
1.593451 Gtype    b'lemma:WT'
1.592959 Med      b'+1:lemma:minimal'
1.592959 Med      b'+1:word:minimal'
1.590396 Gtype    b'-1:lemma:nsrr'
1.590396 Gtype    b'+1:lemma:flagtag'
1.590396 Gtype    b'-1:word:NsrR'
1.590396 Gtype    b'+1:word:Flagtag'
1.582364 O        b'lemma:ompr'
1.570534 Med      b'lemma:m63'
1.570534 Med      b'word:M63'
1.546116 Temp     b'-1:lemma:sample'
1.534223 OD       b'+1:postag:IN'
1.522575 Anti     b'+1:lemma:antibody'
1.522575 Anti     b'+1:word:antibody'
1.518823 Gversion b'lemma:u00096'
1.518823 Gversion b'+1:lemma:.2'
1.518823 Gversion b'word:U00096'
1.518823 Gversion b'+1:word:.2'
1.513241 Temp     b'-1:lemma:\xcf\x8332'
1.513241 Temp     b'-1:word:\xcf\x8332'
1.491761 Phase    b'-1:lemma:until'
1.491761 Phase    b'-1:word:until'
1.475295 Supp     b'lemma:Trp'
1.475295 Supp     b'word:Trp'
1.474217 Med      b'-1:lemma:minimal'
1.474217 Med      b'-1:word:minimal'
1.474106 Air      b'-1:lemma:_'
1.474106 Air      b'-1:word:_'
1.473763 Technique b'-1:lemma:chip-exo'
1.473757 O        b'lemma:affyexp'
1.473757 O        b'word:affyexp'
1.465026 Gtype    b'+1:lemma:cra'
1.465026 Gtype    b'+1:word:cra'
1.463457 O        b'-1:word:grown'
1.460248 O        b'lemma:genotype/variation'
1.460248 O        b'word:genotype/variation'
1.459170 pH       b'+1:postag:CD'
1.453695 Gtype    b'lemma:\xce\xb4cra'
1.451543 O        b'lemma:or'
1.451543 O        b'word:or'
1.445096 O        b'+2:ner:KWSUPP'
1.444537 Anti     b'lemma:anti-rpos'
1.444537 Anti     b'word:anti-RpoS'
1.444323 Gversion b'lemma:.2'
1.444323 Gversion b'-1:lemma:u00096'
1.444323 Gversion b'word:.2'
1.444323 Gversion b'-1:word:U00096'
1.442771 Anti     b'lemma:anti-rpob'
1.442771 Anti     b'word:anti-RpoB'
1.436879 O        b'+1:lemma:\xe2\x88\x86'
1.436879 O        b'+1:word:\xe2\x88\x86'
1.429775 O        b'+1:lemma:43'
1.429775 O        b'+1:word:43'
1.426822 Gtype    b'lemma:fnr8myc'
1.426822 Gtype    b'word:Fnr8myc'
1.423187 Supp     b'-1:word:OmpR'
1.414019 Gtype    b'lemma:\xe2\x88\x86'
1.414019 Gtype    b'word:\xe2\x88\x86'
1.411995 O        b'lemma:harbor'
1.411995 O        b'word:harboring'
1.410952 Temp     b'+1:lemma:\xc2\xb0c'
1.410952 Temp     b'+1:word:\xc2\xb0C'
1.404636 O        b'+1:lemma:coli'
1.404636 O        b'+1:word:coli'
1.400071 O        b'+1:lemma:0.2'
1.400071 O        b'+1:word:0.2'
1.396431 OD       b'lemma:od450'
1.396431 OD       b'word:OD450'
1.396431 OD       b'-1:word:At'
1.395330 O        b'-1:lemma:into'
1.395330 O        b'-1:word:into'
1.393606 O        b'+1:lemma:mid-log'
1.393606 O        b'+1:word:mid-log'
1.383068 Gtype    b'-1:postag:VBG'
1.381467 Gtype    b'-1:lemma:from'
1.381467 Gtype    b'-1:word:from'
1.369399 Gtype    b'hUpper'
1.367193 Anti     b'hGreek'
1.362474 O        b'-1:lemma:grow'
1.360122 Substrain b'-1:lemma:.'
1.360122 Substrain b'-1:postag:.'
1.360122 Substrain b'-1:word:.'
1.359537 Temp     b'-1:lemma:43'
1.359537 Temp     b'-1:word:43'
1.358985 Gtype    b'+1:lemma:pq'
1.358985 Gtype    b'+1:word:PQ'
1.356841 Supp     b'word:Arginine'
1.354220 Supp     b'+1:lemma:2'
1.354220 Supp     b'+1:word:2'
1.351863 Supp     b'lemma:glucose'
1.351863 Supp     b'word:glucose'
1.350851 O        b'-1:lemma:dpd'
1.350851 O        b'-1:word:DPD'
1.343599 Substrain b'+1:lemma:phtpg'
1.343599 Substrain b'+1:word:PhtpG'
1.336140 Air      b'lemma:Anaerobic'
1.332026 OD       b'-1:lemma:od450'
1.332026 OD       b'-1:word:OD450'
1.330454 OD       b'lemma:0.3'
1.330454 OD       b'word:0.3'
1.324762 O        b'-1:lemma:phase'
1.324762 O        b'-1:word:phase'
1.320868 Supp     b'-2:ner:MED'
1.316384 Technique b'-1:lemma:input'
1.316384 Technique b'-1:word:Input'
1.314730 O        b'-1:lemma:-80'
1.314730 O        b'-1:word:-80'
1.310331 Technique b'-1:lemma:_'
1.310331 Technique b'-1:word:_'
1.310150 Supp     b'+1:lemma:1'
1.310150 Supp     b'+1:word:1'
1.303179 Technique b'hLower'
1.296206 Gtype    b'-1:postag:VBP'
1.294577 O        b'lemma:gadx'
1.290245 Supp     b'+1:lemma:deficient'
1.288388 O        b'-1:lemma:type'
1.288388 O        b'-1:word:type'
1.285519 Med      b'-1:lemma:LB'
1.284949 Phase    b'lemma:mid-log'
1.284949 Phase    b'word:mid-log'
1.280446 O        b'+1:lemma:fnr-8myc'
1.280446 O        b'+1:word:Fnr-8myc'
1.267928 Supp     b'+1:word:was'
1.265328 Supp     b'-1:lemma:ompr'
1.261892 OD       b'lemma:0.3-0.35'
1.261892 OD       b'word:0.3-0.35'
1.258752 Temp     b'lemma:\xc2\xb0c'
1.258752 Temp     b'word:\xc2\xb0C'
1.258533 pH       b'lemma:5.5'
1.258533 pH       b'word:5.5'
1.256884 O        b'+1:word:were'
1.252716 O        b'postag:DT'
1.245727 O        b'-1:word:fnr'
1.243137 Supp     b'-1:lemma:without'
1.243137 Supp     b'-1:word:without'
1.238810 Supp     b'-1:lemma:contain'
1.238810 Supp     b'-1:word:containing'
1.233360 O        b'lemma:culture'
1.233137 O        b'+1:ner:MED'
1.232727 O        b'+1:lemma:aerobically'
1.232727 O        b'+1:word:aerobically'
1.230105 Gversion b'lemma:_'
1.230105 Gversion b'word:_'
1.228913 Med      b'+1:lemma:+'
1.228913 Med      b'+1:word:+'
1.220440 Gtype    b'lemma:fur-8myc'
1.220440 Gtype    b'word:fur-8myc'
1.220440 Gtype    b'lemma:cra-8myc-tagged'
1.220440 Gtype    b'word:cra-8myc-tagged'
1.220035 Technique b'+1:lemma:rna-seq'
1.220035 Technique b'+1:word:RNA-seq'
1.213714 OD       b'-1:postag:IN'
1.212578 Phase    b'+1:lemma:culture'
1.211819 O        b'-1:lemma:Anaerobic'
1.210431 O        b'lemma:2-3'
1.210431 O        b'word:2-3'
1.197064 Supp     b'word:NH4Cl'
1.188926 Gtype    b'-1:lemma:wild'
1.188926 Gtype    b'-1:word:wild'
1.188034 O        b'lemma:oxyr'
1.188034 O        b'word:OxyR'
1.180063 O        b'word:tagged'
1.177704 Supp     b'lemma:tryptophan'
1.177704 Supp     b'-1:lemma:mg/l'
1.177704 Supp     b'word:tryptophan'
1.177704 Supp     b'-1:word:mg/L'
1.176899 Supp     b'-1:lemma:potassium'
1.176899 Supp     b'-1:word:potassium'
1.168147 O        b'-1:lemma:wt'
1.160406 Gtype    b'+1:lemma:with'
1.160406 Gtype    b'+1:word:with'
1.160138 Supp     b'lemma:glutamine'
1.160138 Supp     b'-1:lemma:2g/l'
1.160138 Supp     b'word:glutamine'
1.160138 Supp     b'-1:word:2g/L'
1.151555 Supp     b'lemma:fructose'
1.151555 Supp     b'word:fructose'
1.149539 Gtype    b'-1:lemma:_'
1.149539 Gtype    b'-1:word:_'
1.149095 Gtype    b'lemma:phtpg'
1.149095 Gtype    b'word:PhtpG'
1.147380 O        b'lemma:s'
1.147380 O        b'word:S'
1.146495 O        b'postag:CC'
1.144130 Gtype    b'lemma:wild'
1.144130 Gtype    b'word:wild'
1.134210 pH       b'+1:lemma:5.5'
1.134210 pH       b'+1:word:5.5'
1.132518 Supp     b'-1:word:for'
1.128203 Technique b'+1:postag:NN'
1.127092 Technique b'word:RNA-Seq'
1.126177 O        b'+1:lemma:30'
1.126177 O        b'+1:word:30'
1.126146 Vess     b'+1:lemma:at'
1.126146 Vess     b'+1:word:at'
1.126056 O        b'+1:postag:NNP'
1.124325 O        b'lemma:Genome'
1.124325 O        b'word:Genome'
1.122314 OD       b'+1:lemma:of'
1.122314 OD       b'+1:word:of'
1.121076 O        b'lemma:Nac'
1.121076 O        b'word:Nac'
1.114897 O        b'word:GadX'
1.114594 Strain   b'-1:lemma:.'
1.114594 Strain   b'-1:postag:.'
1.114594 Strain   b'-1:word:.'
1.113012 Air      b'-1:lemma:%'
1.113012 Air      b'-1:word:%'
1.111374 Technique b'+1:ner:TF'
1.110669 O        b'-1:lemma:media'
1.110669 O        b'-1:word:media'
1.107447 Supp     b'+1:lemma:mm'
1.107447 Supp     b'+1:word:mM'
1.107447 Supp     b'+1:ner:KWSUPP'
1.104775 pH       b'lemma:.5'
1.104775 pH       b'-1:lemma:ph5'
1.104775 pH       b'word:.5'
1.104775 pH       b'-1:word:pH5'
1.104338 Gtype    b'-1:lemma:vector'
1.104338 Gtype    b'-1:word:vector'
1.104305 Gtype    b'-1:lemma:rpob'
1.104305 Gtype    b'-1:word:RpoB'
1.103054 Supp     b'lemma:30'
1.103054 Supp     b'word:30'
1.101280 Supp     b'postag:NNP'
1.098838 Temp     b'word:sample'
1.093243 O        b'-1:lemma:arginine'
1.088241 Technique b'lemma:ChIP-Seq'
1.084819 Technique b'-1:lemma:IP'
1.084819 Technique b'-1:word:IP'
1.084729 Med      b'+1:lemma:supplement'
1.084729 Med      b'+1:word:supplemented'
1.084327 pH       b'-1:lemma:ph'
1.084327 pH       b'-1:word:pH'
1.083153 Med      b'postag:NNP'
1.075929 Temp     b'lemma:sample'
1.074122 Air      b'+1:lemma:at'
1.074122 Air      b'+1:word:at'
1.071138 Gtype    b'+1:lemma:_'


Top negative:
-0.031141 O        b'+1:lemma:95'
-0.031141 O        b'+1:word:95'
-0.031833 Med      b'-1:lemma:m63'
-0.031833 Med      b'-1:word:M63'
-0.034500 Supp     b'-1:lemma:250'
-0.034500 Supp     b'-1:word:250'
-0.034576 O        b'lemma:final'
-0.034576 O        b'word:final'
-0.036189 O        b'+1:lemma:rna'
-0.036189 O        b'+1:word:RNA'
-0.036945 Supp     b'lemma:and'
-0.036945 Supp     b'word:and'
-0.037310 O        b'-1:lemma:from'
-0.037310 O        b'-1:word:from'
-0.037575 Med      b'+1:postag:NNS'
-0.038856 O        b'+1:word:for'
-0.039536 O        b'lemma:25'
-0.039536 O        b'word:25'
-0.039606 O        b'+1:lemma:='
-0.039606 O        b'+1:word:='
-0.039743 O        b'-1:lemma:rifampicin'
-0.039743 O        b'-1:word:rifampicin'
-0.040037 Gversion b'+1:postag:NN'
-0.040055 O        b'word:anaerobic'
-0.040707 Supp     b'+1:word:were'
-0.041813 Technique b'+2:ner:_'
-0.044487 Temp     b'hUpper'
-0.044583 Med      b'+1:lemma:m9'
-0.044583 Med      b'+1:word:M9'
-0.044584 O        b'lemma:mg/ml'
-0.044584 O        b'-1:lemma:150'
-0.044584 O        b'word:mg/mL'
-0.044584 O        b'-1:word:150'
-0.044834 Phase    b'+1:postag:NN'
-0.045497 O        b'-1:lemma:iptg'
-0.045497 O        b'-1:word:IPTG'
-0.045551 O        b'-1:ner:SUPP'
-0.046521 Gtype    b'-1:lemma:fur'
-0.046521 Gtype    b'-1:word:fur'
-0.046701 O        b'lemma:\xce\xb4soxr'
-0.046701 O        b'word:\xce\x94soxR'
-0.046875 O        b'word:purified'
-0.047221 Phase    b'-1:word:at'
-0.048016 O        b'+1:lemma:.'
-0.048016 O        b'+1:postag:.'
-0.048016 O        b'+1:word:.'
-0.048168 Phase    b'-1:lemma:at'
-0.049265 Med      b'-2:ner:MED'
-0.050076 Supp     b'-1:word:the'
-0.051351 O        b'+1:lemma:o2'
-0.051351 O        b'+1:word:O2'
-0.052759 O        b'+1:lemma:25'
-0.052759 O        b'+1:word:25'
-0.052881 O        b'-1:lemma:='
-0.052881 O        b'-1:word:='
-0.053596 O        b'-1:lemma:phosphate'
-0.053596 O        b'-1:word:phosphate'
-0.054185 O        b'+1:lemma:7.6'
-0.054185 O        b'+1:word:7.6'
-0.054422 O        b'lemma:;'
-0.054422 O        b'-1:lemma:7.6'
-0.054422 O        b'word:;'
-0.054422 O        b'-1:word:7.6'
-0.054441 Supp     b'+2:ner:KWSUPP'
-0.054853 O        b'+1:lemma:0.3'
-0.054853 O        b'+1:word:0.3'
-0.058146 O        b'-1:lemma:affinity'
-0.058419 Supp     b'postag:IN'
-0.058558 Supp     b'+1:lemma:-rrb-'
-0.058558 Supp     b'+1:word:-RRB-'
-0.060282 Supp     b'+1:lemma:dissolve'
-0.060282 Supp     b'+1:word:dissolved'
-0.061677 O        b'+1:lemma:1/100'
-0.061677 O        b'+1:word:1/100'
-0.062274 Phase    b'+2:ner:_'
-0.063180 O        b'-1:lemma:250'
-0.063180 O        b'-1:word:250'
-0.063810 OD       b'+1:lemma:2.0'
-0.063810 OD       b'+1:word:2.0'
-0.066176 O        b'-1:lemma:with'
-0.066176 O        b'-1:word:with'
-0.066282 O        b'+1:lemma:~'
-0.066282 O        b'+1:word:~'
-0.066548 Air      b'isLower'
-0.066782 Vess     b'-2:ner:_'
-0.069830 O        b'+1:lemma:min'
-0.069830 O        b'+1:word:min'
-0.072221 O        b'lemma:1m'
-0.072221 O        b'word:1M'
-0.072436 Strain   b'-2:ner:_'
-0.074696 Supp     b'+1:lemma:dpd'
-0.074696 Supp     b'+1:word:DPD'
-0.075000 Temp     b'+2:ner:_'
-0.076174 Supp     b'lemma:,'
-0.076174 Supp     b'postag:,'
-0.076174 Supp     b'word:,'
-0.076578 O        b'lemma:7.6'
-0.076578 O        b'+1:lemma:;'
-0.076578 O        b'word:7.6'
-0.076578 O        b'+1:word:;'
-0.077815 Gversion b'hUpper'
-0.078453 Supp     b'lemma:10'
-0.078453 Supp     b'word:10'
-0.079159 O        b'+1:lemma:\xc2\xb0c'
-0.079159 O        b'+1:word:\xc2\xb0C'
-0.082649 O        b'+1:lemma:antibody'
-0.082649 O        b'+1:word:antibody'
-0.083741 O        b'lemma:ph'
-0.083741 O        b'word:pH'
-0.090273 O        b'-2:ner:SUPP'
-0.090715 Supp     b'postag:CD'
-0.091119 Gtype    b'+1:postag:CD'
-0.091980 Supp     b'+1:postag:-RRB-'
-0.094428 O        b'-1:lemma:g/l'
-0.094428 O        b'-1:word:g/L'
-0.095910 Supp     b'-1:postag:DT'
-0.096789 O        b'-1:lemma:purify'
-0.099452 Technique b'isNumber'
-0.100256 Agit     b'-1:ner:_'
-0.100491 Med      b'-1:postag:IN'
-0.100796 Anti     b'-1:postag:CD'
-0.100876 Air      b'postag:CD'
-0.101018 Technique b'postag:NN'
-0.101237 Gtype    b'postag:CD'
-0.104505 O        b'postag:NN'
-0.104969 O        b'-1:lemma:minimal'
-0.104969 O        b'-1:word:minimal'
-0.104977 O        b'+1:postag:VBG'
-0.105175 Substrain b'hLower'
-0.105718 Phase    b'+1:ner:_'
-0.107674 O        b'lemma:nitrate'
-0.107674 O        b'word:nitrate'
-0.108770 O        b'+1:word:C'
-0.111717 Supp     b'isNumber'
-0.113616 O        b'-1:postag:VBG'
-0.114103 Strain   b'+2:ner:_'
-0.115464 O        b'+1:lemma:mm'
-0.115464 O        b'+1:word:mM'
-0.115464 O        b'+1:ner:KWSUPP'
-0.115768 O        b'-1:lemma:sodium'
-0.115768 O        b'-1:word:Sodium'
-0.117248 Gtype    b'+1:postag:IN'
-0.119150 O        b'-1:lemma:0.2'
-0.119150 O        b'-1:word:0.2'
-0.121673 O        b'-1:lemma:\xc3\x9f'
-0.121673 O        b'-1:word:\xc3\x9f'
-0.122829 Phase    b'-2:ner:SUPP'
-0.123534 O        b'lemma:o2'
-0.123534 O        b'word:O2'
-0.126608 Gtype    b'+1:lemma:-rrb-'
-0.126608 Gtype    b'+1:word:-RRB-'
-0.127703 O        b'+1:lemma:co2'
-0.127703 O        b'+1:word:CO2'
-0.127796 O        b'lemma:min'
-0.127796 O        b'word:min'
-0.128397 O        b'+1:lemma:5'
-0.128397 O        b'+1:word:5'
-0.129442 O        b'+1:lemma:2.0'
-0.129442 O        b'+1:word:2.0'
-0.129774 Air      b'isUpper'
-0.133138 O        b'-1:lemma:delta'
-0.133138 O        b'-1:word:delta'
-0.135190 Substrain b'isLower'
-0.136008 Gtype    b'-1:lemma:and'
-0.136008 Gtype    b'-1:word:and'
-0.141219 pH       b'symb'
-0.143797 Supp     b'postag:CC'
-0.145318 O        b'-1:word:FNR'
-0.145324 Strain   b'-1:ner:_'
-0.147226 Gtype    b'+1:ner:_'
-0.149937 O        b'lemma:od600'
-0.149937 O        b'word:OD600'
-0.150883 O        b'lemma:150'
-0.150883 O        b'+1:lemma:mg/ml'
-0.150883 O        b'word:150'
-0.150883 O        b'+1:word:mg/mL'
-0.154053 O        b'+1:lemma:fecl2'
-0.154053 O        b'+1:word:FeCl2'
-0.157185 O        b'lemma:dissolve'
-0.157185 O        b'word:dissolved'
-0.157542 O        b'lemma:n2'
-0.157542 O        b'word:N2'
-0.162202 O        b'lemma:fructose'
-0.162202 O        b'word:fructose'
-0.162950 Supp     b'+2:ner:_'
-0.163722 O        b'-1:lemma:~'
-0.163722 O        b'-1:word:~'
-0.163940 O        b'-1:postag:CD'
-0.165960 O        b'-1:lemma:mm'
-0.165960 O        b'-1:word:mM'
-0.166852 Air      b'lemma:anaerobically'
-0.166852 Air      b'word:anaerobically'
-0.168195 O        b'lemma:20'
-0.168195 O        b'word:20'
-0.168356 O        b'-1:lemma:1m'
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