********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.012693066592012175, 'c2': 0.0032984308393503576}
best CV score:0.8324548394172087
model size: 0.15M

Flat F1: 0.8143358530452535
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.595     0.568     0.581        88
       Anti      0.812     1.000     0.897        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.952     0.769     0.851        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.858     0.846     0.852       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.855     0.783     0.814       484


Top likely transitions:
Anti   -> Anti    6.612592
Phase  -> Phase   6.390521
Temp   -> Temp    6.137900
Gtype  -> Gtype   6.090221
Air    -> Air     5.043752
Supp   -> Supp    4.902228
OD     -> OD      4.866163
Gversion -> Gversion 4.602994
Agit   -> Agit    4.238393
Technique -> Technique 3.830979
pH     -> pH      3.657686
Med    -> Med     3.521916
O      -> O       3.209233
Technique -> Air     2.384538
Substrain -> Gtype   0.918212
Temp   -> O       0.687239
Gtype  -> pH      0.535957
Strain -> O       0.204764
Gtype  -> Air     0.127544
Gtype  -> Supp    0.102652
O      -> Technique 0.045707
O      -> Substrain -0.007150
O      -> Agit    -0.015896
Gversion -> OD      -0.042444
Gtype  -> Temp    -0.060057
O      -> Vess    -0.067299
Agit   -> O       -0.070664
O      -> pH      -0.099504
O      -> Strain  -0.107962
Phase  -> Technique -0.109437
Phase  -> Air     -0.123373
OD     -> Temp    -0.143486
Anti   -> Supp    -0.144520
Air    -> Temp    -0.148673
pH     -> Supp    -0.149736
Technique -> Supp    -0.165076
O      -> Gtype   -0.165499
Supp   -> Anti    -0.174097
Anti   -> O       -0.206132
Technique -> OD      -0.215551
Phase  -> Anti    -0.245975
Supp   -> Air     -0.278269
Supp   -> Gversion -0.312576
Med    -> pH      -0.315087
Technique -> O       -0.326152
Air    -> O       -0.336989
O      -> Gversion -0.342374
OD     -> O       -0.354838
Med    -> Air     -0.379470
Supp   -> OD      -0.395931
Agit   -> Air     -0.447143
Gversion -> Med     -0.477039
Technique -> Med     -0.485079
OD     -> Air     -0.506580
Phase  -> Supp    -0.508157
Air    -> Med     -0.512213
Gversion -> O       -0.523741
Gtype  -> Gversion -0.526556
Gtype  -> Technique -0.531084
Med    -> Technique -0.538596
Gtype  -> OD      -0.570957
O      -> Phase   -0.654160
Med    -> Phase   -0.662056
O      -> Anti    -0.694870
Anti   -> Phase   -0.697803
Anti   -> Temp    -0.704350
Gtype  -> Anti    -0.744360
Air    -> Agit    -0.786674
O      -> Temp    -0.789938
OD     -> Supp    -0.801979
Med    -> OD      -0.817330
Supp   -> Gtype   -0.834122
OD     -> Med     -0.897171
Gtype  -> O       -0.906915
Anti   -> Med     -0.932751
Supp   -> O       -0.948492
Air    -> Phase   -0.967365
Gversion -> Supp    -1.012276
Supp   -> Phase   -1.024970
Phase  -> O       -1.065885
Phase  -> Med     -1.085330
Gtype  -> Phase   -1.203084
Technique -> Gtype   -1.247499
Phase  -> OD      -1.259845
Air    -> Supp    -1.326855
O      -> Supp    -1.531257
Gtype  -> Med     -1.693870
Med    -> O       -1.723217
Technique -> pH      -1.911489
Temp   -> Med     -2.252971
O      -> OD      -2.453566
Substrain -> O       -2.922703
O      -> Air     -3.603317
Med    -> Supp    -3.823526
O      -> Med     -4.052177
Supp   -> Med     -5.356529


Top unlikely transitions:
Anti   -> Anti    6.612592
Phase  -> Phase   6.390521
Temp   -> Temp    6.137900
Gtype  -> Gtype   6.090221
Air    -> Air     5.043752
Supp   -> Supp    4.902228
OD     -> OD      4.866163
Gversion -> Gversion 4.602994
Agit   -> Agit    4.238393
Technique -> Technique 3.830979
pH     -> pH      3.657686
Med    -> Med     3.521916
O      -> O       3.209233
Technique -> Air     2.384538
Substrain -> Gtype   0.918212
Temp   -> O       0.687239
Gtype  -> pH      0.535957
Strain -> O       0.204764
Gtype  -> Air     0.127544
Gtype  -> Supp    0.102652
O      -> Technique 0.045707
O      -> Substrain -0.007150
O      -> Agit    -0.015896
Gversion -> OD      -0.042444
Gtype  -> Temp    -0.060057
O      -> Vess    -0.067299
Agit   -> O       -0.070664
O      -> pH      -0.099504
O      -> Strain  -0.107962
Phase  -> Technique -0.109437
Phase  -> Air     -0.123373
OD     -> Temp    -0.143486
Anti   -> Supp    -0.144520
Air    -> Temp    -0.148673
pH     -> Supp    -0.149736
Technique -> Supp    -0.165076
O      -> Gtype   -0.165499
Supp   -> Anti    -0.174097
Anti   -> O       -0.206132
Technique -> OD      -0.215551
Phase  -> Anti    -0.245975
Supp   -> Air     -0.278269
Supp   -> Gversion -0.312576
Med    -> pH      -0.315087
Technique -> O       -0.326152
Air    -> O       -0.336989
O      -> Gversion -0.342374
OD     -> O       -0.354838
Med    -> Air     -0.379470
Supp   -> OD      -0.395931
Agit   -> Air     -0.447143
Gversion -> Med     -0.477039
Technique -> Med     -0.485079
OD     -> Air     -0.506580
Phase  -> Supp    -0.508157
Air    -> Med     -0.512213
Gversion -> O       -0.523741
Gtype  -> Gversion -0.526556
Gtype  -> Technique -0.531084
Med    -> Technique -0.538596
Gtype  -> OD      -0.570957
O      -> Phase   -0.654160
Med    -> Phase   -0.662056
O      -> Anti    -0.694870
Anti   -> Phase   -0.697803
Anti   -> Temp    -0.704350
Gtype  -> Anti    -0.744360
Air    -> Agit    -0.786674
O      -> Temp    -0.789938
OD     -> Supp    -0.801979
Med    -> OD      -0.817330
Supp   -> Gtype   -0.834122
OD     -> Med     -0.897171
Gtype  -> O       -0.906915
Anti   -> Med     -0.932751
Supp   -> O       -0.948492
Air    -> Phase   -0.967365
Gversion -> Supp    -1.012276
Supp   -> Phase   -1.024970
Phase  -> O       -1.065885
Phase  -> Med     -1.085330
Gtype  -> Phase   -1.203084
Technique -> Gtype   -1.247499
Phase  -> OD      -1.259845
Air    -> Supp    -1.326855
O      -> Supp    -1.531257
Gtype  -> Med     -1.693870
Med    -> O       -1.723217
Technique -> pH      -1.911489
Temp   -> Med     -2.252971
O      -> OD      -2.453566
Substrain -> O       -2.922703
O      -> Air     -3.603317
Med    -> Supp    -3.823526
O      -> Med     -4.052177
Supp   -> Med     -5.356529


Top positive:
5.891545 O        b'lemma:_'
5.891545 O        b'word:_'
5.702880 Air      b'lemma:anaerobic'
5.511492 O        b'-1:lemma:lb'
5.422930 Gtype    b'hGreek'
5.049574 Phase    b'lemma:stationary'
5.049574 Phase    b'word:stationary'
5.049574 Phase    b'lemma:exponential'
5.049574 Phase    b'word:exponential'
4.893362 O        b'word:Cra'
4.766482 Supp     b'lemma:pq'
4.766482 Supp     b'word:PQ'
4.687120 Supp     b'lemma:Iron'
4.687120 Supp     b'word:Iron'
4.687120 Supp     b'+1:word:Deficient'
4.685906 Supp     b'-1:word:Cra'
4.486927 Gtype    b'word:WT'
4.358613 Air      b'postag:RB'
4.357641 Air      b'lemma:aerobically'
4.357641 Air      b'word:aerobically'
4.345625 Med      b'lemma:MOPS'
4.345625 Med      b'word:MOPS'
4.248975 Gtype    b'lemma:wt'
4.173471 Supp     b'-1:lemma:Cra'
4.148882 Air      b'word:Anaerobic'
4.110003 Technique b'lemma:chipseq'
4.094623 Technique b'word:ChIPSeq'
4.079942 O        b'-1:lemma:tag'
4.003783 Air      b'word:Aerobic'
3.973542 O        b'lemma:-'
3.973542 O        b'word:-'
3.968521 Med      b'lemma:LB'
3.952984 O        b'-1:word:tag'
3.865032 O        b'+1:postag:RB'
3.807023 O        b'postag:VBG'
3.784535 Air      b'postag:JJ'
3.769471 Supp     b'lemma:nh4cl'
3.733546 Gtype    b'-1:ner:GEN'
3.657663 Supp     b'lemma:2h'
3.657663 Supp     b'-1:lemma:additional'
3.657663 Supp     b'word:2h'
3.657663 Supp     b'-1:word:additional'
3.554862 O        b'lemma:chip'
3.509692 O        b'-1:lemma:glucose'
3.509692 O        b'-1:word:glucose'
3.445107 O        b'lemma:at'
3.414641 Supp     b'+1:lemma:\xc2\xb5m'
3.414641 Supp     b'+1:word:\xc2\xb5M'
3.362783 O        b'-1:word:Anaerobic'
3.321891 Technique b'word:ChIP-exo'
3.256773 O        b'-1:postag:NNS'
3.254875 Supp     b'lemma:arginine'
3.238024 O        b'-1:lemma:pq'
3.238024 O        b'-1:word:PQ'
3.231794 O        b'lemma:Cra'
3.211785 Air      b'-1:lemma:ChIP-Seq'
3.211785 Air      b'-1:word:ChIP-Seq'
3.195761 Gtype    b'lemma:wildtype'
3.160722 Technique b'lemma:ChIP-exo'
3.159697 Gtype    b'lemma:type'
3.159697 Gtype    b'word:type'
3.120346 Supp     b'-1:lemma:+'
3.120346 Supp     b'-1:word:+'
3.098572 O        b'word:Lrp'
3.085046 O        b'-2:ner:MED'
3.067626 Air      b'-1:lemma:-'
3.067626 Air      b'-1:word:-'
3.055269 Supp     b'lemma:no3'
3.055269 Supp     b'word:NO3'
3.020754 Supp     b'-1:ner:SUPP'
3.019961 Gtype    b'+1:lemma:type'
3.019961 Gtype    b'+1:word:type'
3.017896 Med      b'+1:lemma:2.0'
3.017896 Med      b'+1:word:2.0'
2.984322 Supp     b'lemma:iptg'
2.984322 Supp     b'word:IPTG'
2.969462 O        b'lemma:with'
2.969462 O        b'word:with'
2.962534 O        b'lemma:purr'
2.962534 O        b'word:PurR'
2.950121 Anti     b'lemma:\xcf\x8332'
2.950121 Anti     b'word:\xcf\x8332'
2.940342 Gversion b'lemma:asm584v2'
2.940342 Gversion b'word:ASM584v2'
2.940229 Med      b'-1:word:ml'
2.938611 Air      b'lemma:aerobic'
2.933306 Med      b'+1:lemma:0.4'
2.933306 Med      b'+1:word:0.4'
2.930348 Med      b'-1:lemma:ml'
2.926259 O        b'+1:lemma:od600'
2.926259 O        b'+1:word:OD600'
2.903777 Gtype    b'lemma:dfnr'
2.903777 Gtype    b'word:dFNR'
2.885307 Supp     b'lemma:Fe'
2.885307 Supp     b'word:Fe'
2.870668 O        b'-1:lemma:nh4cl'
2.832196 O        b'-1:lemma:acetate'
2.832196 O        b'-1:word:acetate'
2.811492 O        b'lemma:CEL'
2.811492 O        b'word:CEL'
2.807716 Strain   b'lemma:k-12'
2.807716 Strain   b'word:K-12'
2.797415 Med      b'lemma:media'
2.797415 Med      b'word:media'
2.787756 Gtype    b'lemma:delta-fnr'
2.787756 Gtype    b'word:delta-fnr'
2.781802 Vess     b'lemma:flask'
2.781802 Vess     b'-1:lemma:warm'
2.781802 Vess     b'word:flask'
2.781802 Vess     b'-1:word:warmed'
2.768733 Gtype    b'+1:postag::'
2.764358 O        b'lemma:b'
2.764358 O        b'word:B'
2.723791 O        b'lemma:chip-arca'
2.723791 O        b'word:chip-ArcA'
2.717000 O        b'word:OmpR'
2.688174 O        b'-1:lemma:0.3'
2.688174 O        b'-1:word:0.3'
2.683546 Med      b'word:LB'
2.679969 O        b'word:C'
2.669043 O        b'lemma:for'
2.661619 O        b'-1:lemma:nacl'
2.661619 O        b'-1:word:NaCl'
2.657880 Med      b'lemma:minimal'
2.657880 Med      b'word:minimal'
2.639962 Med      b'-1:lemma:fresh'
2.639962 Med      b'-1:word:fresh'
2.621598 Substrain b'+1:lemma:phtpg'
2.621598 Substrain b'+1:word:PhtpG'
2.613355 O        b'-1:lemma:fructose'
2.613355 O        b'-1:word:fructose'
2.598379 Gtype    b'lemma:pk4854'
2.598379 Gtype    b'word:PK4854'
2.589936 O        b'lemma::'
2.589936 O        b'word::'
2.569879 O        b'lemma:ompr'
2.565927 Phase    b'postag:NN'
2.548707 O        b'lemma:chip-fnr'
2.548707 O        b'word:chip-Fnr'
2.548298 O        b'-1:word:Aerobic'
2.534867 Anti     b'lemma:none'
2.534867 Anti     b'word:none'
2.519891 Technique b'lemma:rnaseq'
2.519891 Technique b'word:RNASeq'
2.516926 O        b'lemma:2'
2.516926 O        b'word:2'
2.512994 Supp     b'+1:lemma:iptg'
2.512994 Supp     b'+1:word:IPTG'
2.503455 O        b'word:A'
2.496337 O        b'lemma:1'
2.496337 O        b'word:1'
2.486873 Gversion b'lemma:nc'
2.486873 Gversion b'word:NC'
2.477153 O        b'+1:lemma:k-12'
2.477153 O        b'+1:word:K-12'
2.468431 Temp     b'lemma:43'
2.468431 Temp     b'word:43'
2.460385 O        b'lemma:trpr'
2.460385 O        b'word:TrpR'
2.459695 OD       b'lemma:od450'
2.459695 OD       b'word:OD450'
2.459695 OD       b'-1:word:At'
2.456344 O        b'-1:lemma:arginine'
2.422186 Substrain b'lemma:mg1655'
2.422186 Substrain b'word:MG1655'
2.413560 Gversion b'lemma:chip-seq'
2.411193 O        b'word:for'
2.401348 Substrain b'lemma:mg1655star'
2.401348 Substrain b'word:MG1655star'
2.399833 Air      b'lemma:anaeroibc'
2.399833 Air      b'word:Anaeroibc'
2.398432 O        b'lemma:rpob'
2.398432 O        b'word:RpoB'
2.396455 O        b'lemma:or'
2.396455 O        b'word:or'
2.395577 Supp     b'lemma:acetate'
2.395577 Supp     b'word:acetate'
2.391576 Med      b'lemma:medium'
2.391576 Med      b'word:medium'
2.385515 Anti     b'lemma:seqa'
2.385515 Anti     b'word:SeqA'
2.384105 Technique b'-1:lemma:chip-exo'
2.374720 Technique b'+1:lemma:rna-seq'
2.374720 Technique b'+1:word:RNA-seq'
2.353599 Supp     b'lemma:Trp'
2.353599 Supp     b'word:Trp'
2.349985 Temp     b'-1:word:sample'
2.349797 O        b'lemma:.'
2.349797 O        b'postag:.'
2.349797 O        b'word:.'
2.349575 Agit     b'+1:lemma:rpm'
2.349575 Agit     b'+1:word:rpm'
2.347451 O        b'lemma:rep2'
2.347451 O        b'word:rep2'
2.347451 O        b'lemma:rep1'
2.347451 O        b'word:rep1'
2.337539 O        b'-1:lemma:into'
2.337539 O        b'-1:word:into'
2.324748 O        b'lemma:soxr'
2.324748 O        b'word:SoxR'
2.324748 O        b'lemma:soxs'
2.324748 O        b'word:SoxS'
2.323647 Supp     b'-1:word:OmpR'
2.313304 Phase    b'lemma:mid-log'
2.313304 Phase    b'word:mid-log'
2.307178 O        b'lemma:culture'
2.291460 Supp     b'lemma:nacl'
2.291460 Supp     b'word:NaCl'
2.290534 Temp     b'-1:lemma:sample'
2.289683 O        b'lemma:\xcf\x8332'
2.289683 O        b'word:\xcf\x8332'
2.289570 Gtype    b'lemma:wild-type'
2.282238 Gversion b'word:ChIP-Seq'
2.248851 O        b'lemma:argr'
2.248851 O        b'word:ArgR'
2.248705 pH       b'+1:postag:CD'
2.224019 O        b'postag:DT'
2.213619 Supp     b'lemma:Leu'
2.213619 Supp     b'word:Leu'
2.212894 Gtype    b'+1:lemma:cra'
2.212894 Gtype    b'+1:word:cra'
2.212496 Gtype    b'lemma:arca8myc'
2.212496 Gtype    b'word:ArcA8myc'
2.201191 O        b'+1:word:ChIP-Seq'
2.189392 Supp     b'lemma:Adenine'
2.189392 Supp     b'word:Adenine'
2.180618 Air      b'-1:lemma:co2'
2.180618 Air      b'-1:word:CO2'
2.175580 Gtype    b'lemma:WT'
2.164642 Technique b'lemma:rna-seq'
2.159511 pH       b'lemma:ph5'
2.159511 pH       b'+1:lemma:.5'
2.159511 pH       b'word:pH5'
2.159511 pH       b'+1:word:.5'
2.146944 Gtype    b'-1:postag:VBG'
2.123814 Med      b'+1:lemma:minimal'
2.123814 Med      b'+1:word:minimal'
2.109602 Agit     b'lemma:rpm'
2.109602 Agit     b'word:rpm'
2.095797 pH       b'lemma:5.5'
2.095797 pH       b'word:5.5'
2.095286 Temp     b'-1:lemma:43'
2.095286 Temp     b'-1:word:43'
2.092814 O        b'lemma:3'
2.092814 O        b'word:3'
2.092786 Air      b'word:anaerobic'
2.092651 O        b'-1:lemma:no3'
2.092651 O        b'-1:word:NO3'
2.083646 O        b'lemma:2-3'
2.083646 O        b'word:2-3'
2.077587 Supp     b'lemma:rifampicin'
2.077587 Supp     b'word:rifampicin'
2.061725 Technique b'word:ChIP-Seq'
2.048911 O        b'lemma:affyexp'
2.048911 O        b'word:affyexp'
2.040587 Phase    b'-1:lemma:until'
2.040587 Phase    b'-1:word:until'
2.028732 Supp     b'+1:lemma:Deficient'
2.028000 Gversion b'-1:lemma:nc'
2.028000 Gversion b'+1:lemma:000913'
2.028000 Gversion b'-1:word:NC'
2.028000 Gversion b'+1:word:000913'
2.024143 Gtype    b'lemma:\xce\xb4fur'
2.024143 Gtype    b'word:\xce\x94fur'
2.019319 O        b'-1:lemma:ChIP-exo'
2.019015 Gversion b'lemma:000913'
2.019015 Gversion b'word:000913'
2.017770 Supp     b'+1:word:hours'
2.014485 Gtype    b'lemma:deltaseqa'
2.014485 Gtype    b'-1:lemma:old'
2.014485 Gtype    b'word:deltaSeqA'
2.014485 Gtype    b'-1:word:old'
2.014080 Gtype    b'postag:JJ'
1.998080 Technique b'+1:lemma:chip-exo'
1.989581 Gtype    b'-1:lemma:nsrr'
1.989581 Gtype    b'+1:lemma:flagtag'
1.989581 Gtype    b'-1:word:NsrR'
1.989581 Gtype    b'+1:word:Flagtag'
1.970620 Supp     b'+1:lemma:2'
1.970620 Supp     b'+1:word:2'
1.970388 Supp     b'+1:lemma:1'
1.970388 Supp     b'+1:word:1'
1.953428 O        b'+1:lemma:mid-log'
1.953428 O        b'+1:word:mid-log'
1.938481 Gtype    b'lemma:fnr8myc'
1.938481 Gtype    b'word:Fnr8myc'
1.923083 Gtype    b'-1:postag:VBP'
1.922210 Supp     b'lemma:dpd'
1.922210 Supp     b'word:DPD'
1.915449 Gversion b'lemma:u00096'
1.915449 Gversion b'+1:lemma:.2'
1.915449 Gversion b'word:U00096'
1.915449 Gversion b'+1:word:.2'
1.914463 Supp     b'-1:lemma:with'
1.914463 Supp     b'-1:word:with'
1.911801 O        b'word:tagged'
1.910471 O        b'postag::'
1.883670 pH       b'+1:lemma:5.5'
1.883670 pH       b'+1:word:5.5'
1.869633 O        b'+1:lemma:pq'
1.869633 O        b'+1:word:PQ'
1.862051 Supp     b'+1:lemma:_'
1.862051 Supp     b'+1:word:_'
1.853182 Agit     b'-1:lemma:250'
1.853182 Agit     b'-1:word:250'
1.851717 O        b'-1:lemma:wt'
1.847692 Air      b'-1:lemma:ryhb'
1.847692 Air      b'-1:word:ryhB'
1.847038 Technique b'-1:lemma:input'
1.847038 Technique b'-1:word:Input'
1.846615 O        b'+1:lemma:250'
1.846615 O        b'+1:word:250'
1.840214 O        b'+1:lemma:minute'
1.840214 O        b'+1:word:minutes'
1.835473 O        b'lemma:oxyr'
1.835473 O        b'word:OxyR'
1.834898 Supp     b'-1:lemma:ompr'
1.834546 O        b'+1:lemma:43'
1.834546 O        b'+1:word:43'
1.818930 Anti     b'lemma:anti-rpob'
1.818930 Anti     b'word:anti-RpoB'
1.813269 O        b'lemma:pt7'
1.813269 O        b'word:pT7'
1.810888 O        b'lemma:ntrc'
1.810888 O        b'word:NtrC'
1.810888 O        b'lemma:csir'
1.810888 O        b'word:CsiR'
1.806045 O        b'+1:lemma:coli'
1.806045 O        b'+1:word:coli'
1.804542 O        b'lemma:Genome'
1.804542 O        b'word:Genome'
1.804419 O        b'+1:lemma:wt'
1.803622 Anti     b'lemma:anti-rpos'
1.803622 Anti     b'word:anti-RpoS'
1.798352 O        b'+1:lemma:o.d.'
1.798352 O        b'+1:word:O.D.'
1.797325 O        b'lemma:Lrp'
1.793039 O        b'word:at'
1.780796 O        b'+1:word:WT'
1.779940 Gtype    b'-1:lemma:rpob'
1.779940 Gtype    b'-1:word:RpoB'
1.778774 Gtype    b'lemma:\xce\xb4cra'
1.777051 Anti     b'+1:lemma:antibody'
1.777051 Anti     b'+1:word:antibody'
1.776866 O        b'word:GadX'
1.770020 Temp     b'-1:lemma:\xcf\x8332'
1.770020 Temp     b'-1:word:\xcf\x8332'
1.769992 O        b'lemma:genotype/variation'
1.769992 O        b'word:genotype/variation'
1.767802 Technique b'hUpper'
1.762241 Supp     b'-1:lemma:vol'
1.762241 Supp     b'-1:word:vol'
1.752649 O        b'lemma:gadx'
1.751660 Gtype    b'-1:lemma:\xe2\x88\x86'
1.751660 Gtype    b'-1:word:\xe2\x88\x86'
1.749602 Gtype    b'+2:ner:SUPP'
1.713319 Gtype    b'hUpper'
1.710265 OD       b'-1:lemma:od450'
1.710265 OD       b'-1:word:OD450'
1.702748 Supp     b'+1:word:was'
1.693901 Air      b'-1:lemma:cm20'
1.693901 Air      b'-1:word:Cm20'
1.692741 O        b'+1:lemma:0.2'
1.692741 O        b'+1:word:0.2'
1.681102 Gtype    b'-1:lemma:factor'
1.681102 Gtype    b'-1:word:factor'
1.671873 Gtype    b'lemma:flagtag'
1.671873 Gtype    b'word:Flagtag'
1.670179 O        b'lemma:Nac'
1.670179 O        b'word:Nac'
1.658156 Gtype    b'lemma:crp'
1.658156 Gtype    b'word:crp'
1.653961 Supp     b'+1:lemma:anaerobically'
1.653961 Supp     b'+1:word:anaerobically'
1.652560 Supp     b'-1:lemma:without'
1.652560 Supp     b'-1:word:without'
1.648052 O        b'-1:lemma:type'
1.648052 O        b'-1:word:type'
1.644601 Technique b'-1:lemma:rna-seq'
1.644601 Technique b'-1:word:RNA-seq'
1.634851 Med      b'lemma:m63'
1.634851 Med      b'word:M63'
1.631841 Strain   b'+1:lemma:substr'
1.631841 Strain   b'+1:word:substr'
1.628601 Anti     b'lemma:anti-myc'
1.628601 Anti     b'word:anti-myc'
1.626779 Temp     b'-1:lemma:37'
1.626779 Temp     b'-1:word:37'
1.616414 Technique b'+1:word:ChIP-exo'
1.613846 OD       b'+1:postag:IN'
1.611893 O        b'+1:ner:MED'
1.611321 O        b'+1:word:wash'
1.609877 Gtype    b'lemma:delta-arca'
1.609877 Gtype    b'word:delta-arcA'
1.601812 O        b'-1:lemma:Anaerobic'
1.600056 Gtype    b'lemma:fur-8myc'
1.600056 Gtype    b'word:fur-8myc'
1.600056 Gtype    b'lemma:cra-8myc-tagged'
1.600056 Gtype    b'word:cra-8myc-tagged'
1.597174 Gtype    b'+1:word:the'
1.586277 OD       b'lemma:0.3'
1.586277 OD       b'word:0.3'
1.575580 O        b'-1:word:Arginine'
1.568136 Gtype    b'+1:lemma:small'
1.568136 Gtype    b'+1:word:small'
1.565072 Temp     b'lemma:37'
1.565072 Temp     b'word:37'
1.545319 O        b'+1:postag:VBN'
1.540811 Gtype    b'+1:lemma:the'
1.536300 Air      b'+1:lemma:at'
1.536300 Air      b'+1:word:at'
1.531606 Phase    b'+1:lemma:phase'
1.531606 Phase    b'+1:word:phase'
1.529235 O        b'-1:lemma:.5'
1.529235 O        b'-1:word:.5'
1.528640 Technique b'word:RNA-Seq'
1.512828 O        b'-1:lemma:-80'
1.512828 O        b'-1:word:-80'
1.504645 Temp     b'lemma:\xc2\xb0c'
1.504645 Temp     b'word:\xc2\xb0C'
1.498280 Gversion b'lemma:.2'
1.498280 Gversion b'-1:lemma:u00096'
1.498280 Gversion b'word:.2'
1.498280 Gversion b'-1:word:U00096'
1.496690 Gtype    b'lemma:delta-soxr'
1.496690 Gtype    b'word:delta-soxR'
1.496690 Gtype    b'lemma:delta-gadx'
1.496690 Gtype    b'word:delta-gadX'
1.496690 Gtype    b'lemma:delta-gadw'
1.496690 Gtype    b'word:delta-gadW'
1.496690 Gtype    b'lemma:delta-oxyr'
1.496690 Gtype    b'word:delta-oxyR'
1.496690 Gtype    b'lemma:delta-gade'
1.496690 Gtype    b'word:delta-gadE'
1.496690 Gtype    b'lemma:delta-soxs'
1.496690 Gtype    b'word:delta-soxS'
1.496571 Gtype    b'lemma:gade-8myc'
1.496571 Gtype    b'word:gadE-8myc'
1.485384 O        b'lemma:harbor'
1.485384 O        b'word:harboring'
1.482135 Gtype    b'+1:lemma:pq'
1.482135 Gtype    b'+1:word:PQ'
1.478098 Med      b'postag:NNP'
1.468422 O        b'+1:lemma:30'
1.468422 O        b'+1:word:30'
1.463964 Supp     b'-1:lemma:potassium'
1.463964 Supp     b'-1:word:potassium'
1.462821 O        b'+1:postag:VBZ'
1.462763 O        b'+1:lemma:20'
1.462763 O        b'+1:word:20'
1.453255 Gtype    b'-1:lemma:from'
1.453255 Gtype    b'-1:word:from'
1.451036 Supp     b'+1:lemma:hour'
1.450305 Supp     b'lemma:glutamine'
1.450305 Supp     b'-1:lemma:2g/l'
1.450305 Supp     b'word:glutamine'
1.450305 Supp     b'-1:word:2g/L'
1.449687 Technique b'hLower'
1.439082 Gtype    b'lemma:ompr-8myc'
1.439082 Gtype    b'word:ompR-8myc'
1.432488 O        b'-1:lemma:min'
1.432488 O        b'-1:word:min'
1.431089 Med      b'+1:lemma:+'
1.431089 Med      b'+1:word:+'
1.428949 Supp     b'lemma:final'
1.428949 Supp     b'word:final'
1.425237 Gversion b'lemma:_'
1.425237 Gversion b'word:_'
1.424723 O        b'lemma:s'
1.424723 O        b'word:S'
1.416427 Med      b'+1:postag:-LRB-'
1.415365 Med      b'+1:lemma:-lrb-'
1.415365 Med      b'+1:word:-LRB-'
1.414358 O        b'+2:ner:KWSUPP'
1.414245 OD       b'lemma:0.3-0.35'
1.414245 OD       b'word:0.3-0.35'
1.413399 Gtype    b'lemma:ptac'
1.413399 Gtype    b'word:Ptac'
1.412959 Gtype    b'lemma:\xe2\x88\x86'
1.412959 Gtype    b'word:\xe2\x88\x86'
1.411108 Supp     b'word:NH4CL'
1.410861 Gtype    b'lemma:fnr-8myc'
1.410861 Gtype    b'word:Fnr-8myc'
1.409977 O        b'-1:lemma:dpd'
1.409977 O        b'-1:word:DPD'
1.401755 OD       b'-1:lemma:~'
1.401755 OD       b'-1:word:~'
1.400250 Supp     b'-1:postag:IN'
1.399272 Gtype    b'+1:lemma:with'
1.399272 Gtype    b'+1:word:with'
1.394039 Med      b'-1:lemma:minimal'
1.394039 Med      b'-1:word:minimal'
1.385894 O        b'-1:lemma:shake'
1.385894 O        b'-1:word:shaking'
1.385506 O        b'-1:word:fnr'
1.379760 Gtype    b'+1:lemma:_'
1.379760 Gtype    b'+1:word:_'
1.379289 Gtype    b'-1:lemma:vector'
1.379289 Gtype    b'-1:word:vector'
1.374903 O        b'-1:lemma:anaerobic'


Top negative:
-0.040424 O        b'lemma:sodium'
-0.040424 O        b'word:Sodium'
-0.040662 Phase    b'-1:word:at'
-0.040671 O        b'+1:lemma:the'
-0.040814 O        b'-1:lemma:anaerobically'
-0.040814 O        b'-1:word:anaerobically'
-0.040928 Vess     b'hLower'
-0.041857 Technique b'-1:postag:CD'
-0.041949 Supp     b'+2:ner:KWSUPP'
-0.042268 Supp     b'-1:lemma:the'
-0.043238 Agit     b'hLower'
-0.043302 O        b'lemma:25'
-0.043302 O        b'word:25'
-0.043416 Phase    b'+1:ner:_'
-0.043862 Vess     b'+2:ner:_'
-0.045329 O        b'-1:lemma:Fur'
-0.045329 O        b'-1:word:Fur'
-0.046649 Air      b'+1:word:cultures'
-0.048427 O        b'lemma:\xce\xb4soxr'
-0.048427 O        b'word:\xce\x94soxR'
-0.049087 Vess     b'+1:ner:_'
-0.049294 Gtype    b'lemma:fnr'
-0.049463 Temp     b'+1:lemma:to'
-0.049463 Temp     b'+1:postag:TO'
-0.049463 Temp     b'+1:word:to'
-0.049488 O        b'lemma:phosphate'
-0.049488 O        b'word:phosphate'
-0.051674 O        b'+1:lemma:o2'
-0.051674 O        b'+1:word:O2'
-0.052511 Gtype    b'-1:lemma:fur'
-0.052511 Gtype    b'-1:word:fur'
-0.053860 O        b'-1:lemma:rifampicin'
-0.053860 O        b'-1:word:rifampicin'
-0.055173 Anti     b'postag:NN'
-0.055554 Phase    b'+1:postag:IN'
-0.059384 O        b'+1:lemma:25'
-0.059384 O        b'+1:word:25'
-0.060045 O        b'+1:postag:VB'
-0.062438 Phase    b'+2:ner:_'
-0.065003 O        b'-1:lemma:20'
-0.065003 O        b'-1:word:20'
-0.066213 O        b'lemma:;'
-0.066213 O        b'-1:lemma:7.6'
-0.066213 O        b'word:;'
-0.066213 O        b'-1:word:7.6'
-0.066476 Gtype    b'postag:CD'
-0.066736 O        b'+1:lemma:7.6'
-0.066736 O        b'+1:word:7.6'
-0.067201 O        b'-1:lemma:='
-0.067201 O        b'-1:word:='
-0.067297 O        b'-1:lemma:0.2'
-0.067297 O        b'-1:word:0.2'
-0.067690 Med      b'-1:ner:_'
-0.069053 Air      b'isLower'
-0.069703 O        b'-1:lemma:phosphate'
-0.069703 O        b'-1:word:phosphate'
-0.069813 O        b'hGreek'
-0.071457 O        b'+1:lemma:media'
-0.071457 O        b'+1:word:media'
-0.073333 O        b'-1:lemma:with'
-0.073333 O        b'-1:word:with'
-0.073767 Supp     b'-1:postag:DT'
-0.074191 Supp     b'postag:IN'
-0.075296 Supp     b'lemma:,'
-0.075296 Supp     b'postag:,'
-0.075296 Supp     b'word:,'
-0.076094 O        b'word:LB'
-0.079392 O        b'lemma:0.1'
-0.079392 O        b'word:0.1'
-0.080164 Temp     b'hUpper'
-0.080213 O        b'lemma:mg/ml'
-0.080213 O        b'-1:lemma:150'
-0.080213 O        b'word:mg/mL'
-0.080213 O        b'-1:word:150'
-0.080339 O        b'lemma:vol'
-0.080339 O        b'-1:lemma:1/100'
-0.080339 O        b'word:vol'
-0.080339 O        b'-1:word:1/100'
-0.080816 Phase    b'+1:postag:NN'
-0.081426 O        b'lemma:nitrate'
-0.081426 O        b'word:nitrate'
-0.085767 Air      b'+1:lemma:culture'
-0.085916 Gtype    b'-2:ner:TF'
-0.086028 O        b'+1:lemma:5'
-0.086028 O        b'+1:word:5'
-0.086526 O        b'+1:lemma:0.3'
-0.086526 O        b'+1:word:0.3'
-0.086978 Supp     b'+1:ner:SUPP'
-0.088347 Gtype    b'+1:lemma:pk4854'
-0.088347 Gtype    b'+1:word:PK4854'
-0.088443 O        b'+1:lemma:1/100'
-0.088443 O        b'+1:word:1/100'
-0.088920 O        b'lemma:m9'
-0.088920 O        b'word:M9'
-0.090736 O        b'+1:lemma:2.0'
-0.090736 O        b'+1:word:2.0'
-0.091331 O        b'lemma:\xe2\x88\x86'
-0.091331 O        b'word:\xe2\x88\x86'
-0.091374 O        b'lemma:min'
-0.091374 O        b'word:min'
-0.091680 Supp     b'lemma:300'
-0.091680 Supp     b'word:300'
-0.092332 Gtype    b'+1:ner:_'
-0.097370 O        b'-1:lemma:iptg'
-0.097370 O        b'-1:word:IPTG'
-0.099493 O        b'lemma:7.6'
-0.099493 O        b'+1:lemma:;'
-0.099493 O        b'word:7.6'
-0.099493 O        b'+1:word:;'
-0.099521 O        b'+1:lemma:co2'
-0.099521 O        b'+1:word:CO2'
-0.099816 Air      b'isUpper'
-0.100090 O        b'lemma:fructose'
-0.100090 O        b'word:fructose'
-0.100663 Supp     b'postag:CD'
-0.102715 Anti     b'+1:ner:_'
-0.105090 O        b'+1:word:C'
-0.106063 Med      b'hLower'
-0.106709 pH       b'hUpper'
-0.109435 O        b'-1:lemma:for'
-0.109786 Gversion b'hLower'
-0.111937 O        b'+1:word:a'
-0.115706 Substrain b'-1:ner:_'
-0.120032 Supp     b'-1:lemma:250'
-0.120032 Supp     b'-1:word:250'
-0.122309 O        b'-1:lemma:od600'
-0.122309 O        b'-1:word:OD600'
-0.123196 Air      b'+1:postag:NN'
-0.123482 Supp     b'-1:lemma:Fe'
-0.123482 Supp     b'-1:word:Fe'
-0.125627 O        b'+1:lemma:-rrb-'
-0.125627 O        b'+1:word:-RRB-'
-0.125875 Med      b'+1:postag:NNS'
-0.127926 Med      b'postag:-LRB-'
-0.129186 Supp     b'+1:lemma:-rrb-'
-0.129186 Supp     b'+1:word:-RRB-'
-0.130320 O        b'lemma:1m'
-0.130320 O        b'word:1M'
-0.130867 O        b'-1:lemma:dfnr'
-0.130867 O        b'-1:word:dFNR'
-0.130963 O        b'-1:lemma:delta'
-0.130963 O        b'-1:word:delta'
-0.132545 Gtype    b'+1:postag:-LRB-'
-0.133465 O        b'+1:lemma:fecl2'
-0.133465 O        b'+1:word:FeCl2'
-0.134416 O        b'-1:lemma:\xc3\x9f'
-0.134416 O        b'-1:word:\xc3\x9f'
-0.135649 O        b'lemma:250'
-0.135649 O        b'word:250'
-0.136111 O        b'+1:lemma:300'
-0.136111 O        b'+1:word:300'
-0.137265 Gtype    b'+1:postag:IN'
-0.137317 O        b'lemma:n2'
-0.137317 O        b'word:N2'
-0.137919 O        b'lemma:o2'
-0.137919 O        b'word:O2'
-0.138291 O        b'-1:lemma:affinity'
-0.140639 O        b'-1:word:FNR'
-0.142743 O        b'+1:lemma:min'
-0.142743 O        b'+1:word:min'
-0.144757 Med      b'lemma:-lrb-'
-0.144757 Med      b'word:-LRB-'
-0.149335 O        b'lemma:dissolve'
-0.149335 O        b'word:dissolved'
-0.153868 O        b'word:anaerobic'
-0.155265 O        b'+1:lemma:mm'
-0.155265 O        b'+1:word:mM'
-0.155265 O        b'+1:ner:KWSUPP'
-0.155933 Supp     b'lemma:paraquat'
-0.155933 Supp     b'word:paraquat'
-0.156181 O        b'postag:NN'
-0.156851 Air      b'postag:CD'
-0.157083 O        b'+1:postag:CD'
-0.157730 Supp     b'+1:postag:-RRB-'
-0.157807 O        b'-1:lemma:mm'
-0.157807 O        b'-1:word:mM'
-0.158372 Supp     b'+1:postag:NNP'
-0.159117 O        b'-1:postag:CD'
-0.159256 O        b'-1:lemma:~'
-0.159256 O        b'-1:word:~'
-0.160544 O        b'lemma:ph'
-0.160544 O        b'word:pH'
-0.160986 O        b'lemma:minimal'
-0.160986 O        b'word:minimal'
-0.161091 O        b'lemma:od600'
-0.161091 O        b'word:OD600'
-0.162177 O        b'lemma:20'
-0.162177 O        b'word:20'
-0.162902 O        b'-1:lemma:minimal'
-0.162902 O        b'-1:word:minimal'
-0.163400 Temp     b'-1:ner:_'
-0.164377 Technique b'isNumber'
-0.166697 OD       b'hUpper'
-0.169333 O        b'word:ChIP-exo'
-0.169705 Gtype    b'-1:lemma:-'
-0.169705 Gtype    b'-1:word:-'
-0.170257 Supp     b'lemma:and'
-0.170257 Supp     b'word:and'
-0.170910 Agit     b'-1:ner:_'
-0.171007 O        b'word:purified'
-0.172602 O        b'lemma:\xce\xb4oxyr'
-0.172602 O        b'word:\xce\x94oxyR'
-0.178888 O        b'+1:lemma:m'
-0.178888 O        b'+1:word:M'
-0.179485 Strain   b'-2:ner:_'
-0.180017 pH       b'symb'
-0.180391 O        b'-1:lemma:sodium'
-0.180391 O        b'-1:word:Sodium'
-0.187221 Gtype    b'-1:postag:SYM'
-0.192001 Strain   b'-1:ner:_'
-0.192465 Supp     b'+1:lemma:dpd'
-0.192465 Supp     b'+1:word:DPD'
-0.194198 Med      b'+1:ner:MED'
-0.199214 Temp     b'-1:lemma:\xc2\xb0c'
-0.199214 Temp     b'-1:word:\xc2\xb0C'
-0.200779 O        b'lemma:m'
-0.200779 O        b'word:M'
-0.201273 O        b'+1:word:Aerobic'
-0.204086 O        b'-1:lemma:final'
-0.204086 O        b'-1:word:final'
-0.204333 O        b'+1:lemma:-lrb-'
-0.204333 O        b'+1:word:-LRB-'
-0.204594 OD       b'hLower'
-0.209643 Supp     b'+1:postag:VBN'
-0.210275 O        b'lemma:rna'
-0.210275 O        b'word:RNA'
-0.210815 O        b'lemma:glucose'
-0.210815 O        b'word:glucose'
-0.213484 Supp     b'postag::'
-0.213813 O        b'lemma:co2'
-0.213813 O        b'word:CO2'
-0.215024 Supp     b'+1:postag::'
-0.217261 Substrain b'isNumber'
-0.222703 O        b'-1:lemma:the'
-0.223492 O        b'lemma:methanol'
-0.223492 O        b'word:methanol'
-0.225215 O        b'-1:lemma:1m'
-0.225215 O        b'-1:word:1M'
-0.226992 Vess     b'-2:ner:_'
-0.234168 O        b'+2:ner:TF'
-0.243526 O        b'word:hours'
-0.245504 O        b'lemma:m63'
-0.245504 O        b'word:M63'
-0.246004 O        b'-1:lemma:dissolve'
-0.246004 O        b'+1:lemma:methanol'
-0.246004 O        b'-1:word:dissolved'
-0.246004 O        b'+1:word:methanol'
-0.246031 Vess     b'-1:ner:_'
-0.250230 Phase    b'-1:postag:JJ'
-0.250398 O        b'+1:lemma:1m'
-0.250398 O        b'+1:word:1M'
-0.253348 O        b'-1:lemma:ph'
-0.253348 O        b'-1:word:pH'
-0.255684 Supp     b'lemma:-lrb-'
-0.255684 Supp     b'word:-LRB-'
-0.258787 Anti     b'postag:CD'
-0.259187 Temp     b'symb'
-0.259278 Gtype    b'-1:lemma:and'
-0.259278 Gtype    b'-1:word:and'
-0.259461 Phase    b'-2:ner:SUPP'
-0.259753 O        b'lemma:pahse'
-0.259753 O        b'word:pahse'
-0.260076 Supp     b'-1:postag:VBN'
-0.263541 O        b'lemma:nh4cl'
-0.267278 Gtype    b'postag:NNS'
-0.267345 O        b'-1:ner:GEN'
-0.271146 O        b'+1:lemma:of'
-0.271146 O        b'+1:word:of'
-0.272243 O        b'lemma:dpd'
-0.272243 O        b'word:DPD'
-0.274242 O        b'lemma:fecl2'
-0.274242 O        b'word:FeCl2'
-0.275164 O        b'-1:lemma:of'
-0.275164 O        b'-1:word:of'
-0.278125 Substrain b'hLower'
-0.278753 Phase    b'-1:lemma:at'
-0.278782 O        b'-1:lemma:o2'
-0.278782 O        b'-1:word:O2'
-0.285289 O        b'+1:lemma:%'
-0.285289 O        b'+1:word:%'
-0.287648 Gtype    b'-1:postag:CC'
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