********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70.txt

best params:{'c1': 0.11486416926458794, 'c2': 0.02680674100354409}
best CV score:0.8644252350498997
model size: 0.12M

Flat F1: 0.7889552451646998
             precision    recall  f1-score   support

         OD      1.000     0.818     0.900        22
         pH      1.000     1.000     1.000         8
  Technique      0.955     0.913     0.933        23
        Med      1.000     0.943     0.971        53
       Temp      1.000     0.690     0.816        29
       Vess      1.000     1.000     1.000         1
       Agit      0.000     0.000     0.000         0
      Phase      0.875     0.933     0.903        15
        Air      0.556     0.362     0.439        69
       Anti      0.579     1.000     0.733        11
     Strain      0.000     0.000     0.000         1
      Gtype      0.877     0.753     0.810        85
  Substrain      0.000     0.000     0.000         0
       Supp      0.848     0.791     0.819       134
   Gversion      0.000     0.000     0.000         0

avg / total      0.845     0.749     0.789       451


Top likely transitions:
Temp   -> Temp    5.434090
Agit   -> Agit    5.083855
Anti   -> Anti    5.066839
OD     -> OD      4.944534
Supp   -> Supp    4.921053
Med    -> Med     4.814443
Gtype  -> Gtype   4.724645
Gversion -> Gversion 4.371417
O      -> O       4.134917
Phase  -> Phase   4.076535
Air    -> Air     4.013049
Technique -> Technique 3.791769
pH     -> pH      2.691203
Substrain -> Gtype   1.373548
Gtype  -> Supp    1.262860
O      -> Gtype   1.231509
O      -> Technique 1.057715
O      -> Supp    0.927276
Air    -> O       0.926745
Gtype  -> pH      0.675182
Gtype  -> Air     0.618804
Technique -> Air     0.558242
Supp   -> O       0.412087
Temp   -> O       0.355896
O      -> Temp    0.211297
Med    -> O       0.203763
O      -> Anti    0.188101
Strain -> O       0.110948
O      -> Phase   0.067802
O      -> OD      0.026887
Phase  -> O       -0.000033
OD     -> O       -0.000624
O      -> Agit    -0.005237
Anti   -> O       -0.013260
Technique -> OD      -0.015560
Supp   -> Air     -0.017152
Air    -> Supp    -0.041258
Technique -> O       -0.086710
Agit   -> O       -0.090919
Air    -> Med     -0.201293
O      -> Med     -0.213366
Air    -> Phase   -0.347298
Air    -> Temp    -0.357907
Phase  -> Supp    -0.382883
OD     -> Air     -0.397558
Phase  -> OD      -0.415065
Gtype  -> Anti    -0.434583
Gtype  -> Med     -0.515634
Technique -> pH      -0.532638
Gtype  -> O       -0.589161


Top unlikely transitions:
Med    -> Med     4.814443
Gtype  -> Gtype   4.724645
Gversion -> Gversion 4.371417
O      -> O       4.134917
Phase  -> Phase   4.076535
Air    -> Air     4.013049
Technique -> Technique 3.791769
pH     -> pH      2.691203
Substrain -> Gtype   1.373548
Gtype  -> Supp    1.262860
O      -> Gtype   1.231509
O      -> Technique 1.057715
O      -> Supp    0.927276
Air    -> O       0.926745
Gtype  -> pH      0.675182
Gtype  -> Air     0.618804
Technique -> Air     0.558242
Supp   -> O       0.412087
Temp   -> O       0.355896
O      -> Temp    0.211297
Med    -> O       0.203763
O      -> Anti    0.188101
Strain -> O       0.110948
O      -> Phase   0.067802
O      -> OD      0.026887
Phase  -> O       -0.000033
OD     -> O       -0.000624
O      -> Agit    -0.005237
Anti   -> O       -0.013260
Technique -> OD      -0.015560
Supp   -> Air     -0.017152
Air    -> Supp    -0.041258
Technique -> O       -0.086710
Agit   -> O       -0.090919
Air    -> Med     -0.201293
O      -> Med     -0.213366
Air    -> Phase   -0.347298
Air    -> Temp    -0.357907
Phase  -> Supp    -0.382883
OD     -> Air     -0.397558
Phase  -> OD      -0.415065
Gtype  -> Anti    -0.434583
Gtype  -> Med     -0.515634
Technique -> pH      -0.532638
Gtype  -> O       -0.589161
O      -> Air     -0.833200
Supp   -> Med     -0.863491
Technique -> Gtype   -0.999961
Substrain -> O       -1.154679
Med    -> Supp    -1.746454


Top positive:
5.242070 Air      b'word:Aerobic'
4.810824 O        b'lemma:_'
4.810824 O        b'word:_'
4.702604 Air      b'lemma:anaerobic'
4.379183 O        b'word:Cra'
3.811896 Technique b'word:ChIP-Seq'
3.692913 Gtype    b'lemma:wild-type'
3.658772 Air      b'postag:RB'
3.551778 O        b'postag:IN'
3.496331 O        b'-1:lemma:ChIP-exo'
3.382322 Gtype    b'lemma:wt'
3.353140 O        b'postag::'
3.300897 Air      b'word:Anaerobic'
3.260825 Technique b'lemma:ChIP-exo'
3.157424 Technique b'word:ChIP-exo'
3.138715 Supp     b'lemma:Iron'
3.138715 Supp     b'word:Iron'
3.138715 Supp     b'+1:word:Deficient'
3.135138 Gtype    b'word:WT'
3.125987 Technique b'word:ChIPSeq'
3.117161 Supp     b'lemma:nh4cl'
3.113447 Supp     b'lemma:pq'
3.113447 Supp     b'word:PQ'
3.089898 O        b'lemma:2'
3.089898 O        b'word:2'
2.955558 Technique b'lemma:rna-seq'
2.907748 Supp     b'-1:word:Cra'
2.858859 O        b'lemma:-'
2.858859 O        b'word:-'
2.779905 O        b'lemma:1'
2.779905 O        b'word:1'
2.749191 O        b'postag:CC'
2.719373 O        b'lemma:rpob'
2.719373 O        b'word:RpoB'
2.681464 O        b'lemma:3'
2.681464 O        b'word:3'
2.680679 Gversion b'lemma:asm584v2'
2.680679 Gversion b'word:ASM584v2'
2.675651 Phase    b'lemma:mid-log'
2.675651 Phase    b'word:mid-log'
2.644118 O        b'lemma:chip'
2.643576 Strain   b'+1:lemma:substr'
2.643576 Strain   b'+1:word:substr'
2.573762 Gtype    b'lemma:\xce\xb4cra'
2.570718 Gtype    b'word:\xce\x94cra'
2.569025 Med      b'lemma:MOPS'
2.569025 Med      b'word:MOPS'
2.564545 Supp     b'+1:lemma:\xc2\xb5m'
2.564545 Supp     b'+1:word:\xc2\xb5M'
2.540412 O        b'lemma:.'
2.540412 O        b'postag:.'
2.540412 O        b'word:.'
2.523030 O        b'-1:word:tag'
2.521842 Gtype    b'lemma:type'
2.521842 Gtype    b'word:type'
2.501449 Technique b'lemma:chipseq'
2.486934 O        b'lemma:Custom'
2.486934 O        b'word:Custom'
2.456959 Gtype    b'+1:lemma:type'
2.456959 Gtype    b'+1:word:type'
2.442001 O        b'lemma:a'
2.306156 Phase    b'lemma:exponential'
2.306156 Phase    b'word:exponential'
2.306156 Phase    b'lemma:stationary'
2.306156 Phase    b'word:stationary'
2.278404 O        b'-1:lemma:tag'
2.248178 O        b'lemma:b'
2.248178 O        b'word:B'
2.236935 Air      b'word:anaerobic'
2.220325 Supp     b'lemma:arginine'
2.200862 pH       b'+1:postag:CD'
2.198724 Supp     b'lemma:glucose'
2.198724 Supp     b'word:glucose'
2.169027 O        b'+1:postag:RB'
2.146306 Supp     b'lemma:nacl'
2.146306 Supp     b'word:NaCl'
2.141305 O        b'lemma:ompr'
2.141305 O        b'word:OmpR'
2.134893 Gtype    b'lemma:flag-tag'
2.134893 Gtype    b'-1:lemma:c-terminal'
2.134893 Gtype    b'word:Flag-tag'
2.134893 Gtype    b'-1:word:C-terminal'
2.115770 Gversion b'lemma:nc'
2.115770 Gversion b'word:NC'
2.102355 Substrain b'lemma:mg1655'
2.102355 Substrain b'word:MG1655'
2.096735 O        b'+1:lemma:pq'
2.096735 O        b'+1:word:PQ'
2.076016 Gtype    b'postag:-LRB-'
2.067392 O        b'-1:word:Aerobic'
2.067015 Gtype    b'lemma:delta-fnr'
2.067015 Gtype    b'word:delta-fnr'
2.020747 O        b'word:A'
2.011558 Supp     b'lemma:rifampicin'
2.011558 Supp     b'word:rifampicin'
2.009828 Technique b'lemma:rnaseq'
2.009828 Technique b'word:RNASeq'
1.995883 O        b'+1:postag:NNP'
1.979049 Gtype    b'-1:postag:VBG'
1.964073 O        b'+1:word:were'
1.938262 O        b'lemma:rep1'
1.938262 O        b'word:rep1'
1.933374 Supp     b'lemma:acetate'
1.933374 Supp     b'word:acetate'
1.929172 O        b'postag:VBN'
1.923161 Strain   b'lemma:k-12'
1.923161 Strain   b'word:K-12'
1.913934 Technique b'-1:lemma:chip-exo'
1.905918 O        b'lemma:rep3'
1.905918 O        b'word:rep3'
1.902460 Gtype    b'-1:lemma:\xe2\x88\x86'
1.902460 Gtype    b'-1:word:\xe2\x88\x86'
1.888089 Supp     b'lemma:nitrate'
1.888089 Supp     b'word:nitrate'
1.880361 Supp     b'-1:lemma:with'
1.880361 Supp     b'-1:word:with'
1.879119 O        b'+1:word:ChIP-Seq'
1.873439 Gtype    b'lemma:\xe2\x88\x86'
1.873439 Gtype    b'word:\xe2\x88\x86'
1.869636 O        b'-1:lemma:lb'
1.869636 O        b'-1:word:LB'
1.865650 Gversion b'-1:lemma:nc'
1.865650 Gversion b'-1:word:NC'
1.865606 Gtype    b'lemma:arca8myc'
1.865606 Gtype    b'word:ArcA8myc'
1.864036 Agit     b'+1:lemma:rpm'
1.864036 Agit     b'+1:word:rpm'
1.856334 Agit     b'lemma:rpm'
1.856334 Agit     b'word:rpm'
1.839596 Anti     b'lemma:seqa'
1.839596 Anti     b'word:SeqA'
1.836163 Supp     b'-1:postag:CC'
1.835200 O        b'lemma:with'
1.835200 O        b'word:with'
1.814125 O        b'lemma:culture'
1.811651 Supp     b'-1:lemma:Cra'
1.792538 Air      b'-1:lemma:ChIP-Seq'
1.792538 Air      b'-1:word:ChIP-Seq'
1.768358 Air      b'lemma:aerobic'
1.762953 O        b'isLower'
1.736496 Gtype    b'word:cra'
1.714381 Gversion b'word:ChIP-Seq'
1.710946 Air      b'-1:postag::'
1.709986 Gtype    b'postag:NN'
1.698044 O        b'lemma:at'
1.695726 Gtype    b'lemma:\xce\xb4soxr'
1.695726 Gtype    b'word:\xce\x94soxR'
1.678182 Vess     b'lemma:flask'
1.678182 Vess     b'-1:lemma:warm'
1.678182 Vess     b'word:flask'
1.678182 Vess     b'-1:word:warmed'
1.674493 Gtype    b'lemma:pk4854'
1.674493 Gtype    b'word:PK4854'
1.651636 Anti     b'lemma:none'
1.651636 Anti     b'word:none'
1.644746 O        b'-1:lemma:0.3'
1.644746 O        b'-1:word:0.3'
1.636558 Supp     b'lemma:no3'
1.636558 Supp     b'word:NO3'
1.624682 Gtype    b'+1:postag::'
1.623664 Phase    b'-1:lemma:mid-log'
1.623664 Phase    b'-1:word:mid-log'
1.618042 Supp     b'lemma:dpd'
1.618042 Supp     b'word:DPD'
1.614435 Gtype    b'lemma:\xce\xb4fur'
1.614435 Gtype    b'word:\xce\x94fur'
1.613699 Gtype    b'+1:lemma:ph5'
1.613699 Gtype    b'+1:word:pH5'
1.607121 Gversion b'lemma:chip-seq'
1.597322 Anti     b'lemma:\xcf\x8332'
1.597322 Anti     b'word:\xcf\x8332'
1.592709 O        b'lemma:Cra'
1.582551 Med      b'lemma:lb'
1.582551 Med      b'word:LB'
1.568363 Supp     b'-1:lemma:vol'
1.568363 Supp     b'-1:word:vol'
1.559468 Air      b'lemma:Aerobic'
1.556342 Technique b'word:RNA-Seq'
1.553167 Med      b'-1:lemma:ml'
1.553167 Med      b'-1:word:ml'
1.553041 Med      b'+1:lemma:0.4'
1.553041 Med      b'+1:word:0.4'
1.551077 Supp     b'lemma:Leu'
1.551077 Supp     b'word:Leu'
1.543969 Air      b'lemma:anaerobically'
1.543969 Air      b'word:anaerobically'
1.543172 O        b'lemma::'
1.543172 O        b'word::'
1.540510 Anti     b'+1:lemma:antibody'
1.540510 Anti     b'+1:word:antibody'
1.537669 Air      b'lemma:anaeroibc'
1.537669 Air      b'word:Anaeroibc'
1.525613 OD       b'-1:postag:IN'
1.524837 Supp     b'lemma:Fe'
1.524837 Supp     b'word:Fe'
1.524330 Gtype    b'postag:-RRB-'
1.516209 O        b'-1:lemma:glucose'
1.516209 O        b'-1:word:glucose'
1.504553 Gtype    b'+1:lemma:with'
1.504553 Gtype    b'+1:word:with'


Top negative:
-0.149499 Anti     b'+1:word:anti-Fur'
-0.152520 O        b'+1:lemma:95'
-0.152520 O        b'+1:word:95'
-0.156326 Supp     b'+1:lemma:dpd'
-0.156326 Supp     b'+1:word:DPD'
-0.162658 Supp     b'lemma:10'
-0.162658 Supp     b'word:10'
-0.163808 O        b'+1:lemma:for'
-0.165890 Phase    b'+1:postag:NN'
-0.166827 O        b'-1:lemma:dfnr'
-0.166827 O        b'-1:word:dFNR'
-0.171844 O        b'+1:word:was'
-0.175747 O        b'-1:lemma:of'
-0.175747 O        b'-1:word:of'
-0.193766 O        b'-1:word:from'
-0.208529 O        b'-1:lemma:1m'
-0.208529 O        b'-1:word:1M'
-0.210506 Air      b'isLower'
-0.210844 Technique b'-1:postag::'
-0.216830 O        b'+1:lemma:.'
-0.216830 O        b'+1:postag:.'
-0.216830 O        b'+1:word:.'
-0.223522 O        b'-1:lemma:final'
-0.223522 O        b'-1:word:final'
-0.223753 Med      b'-1:postag:CD'
-0.233131 O        b'-1:postag:JJ'
-0.239249 OD       b'isNumber'
-0.243733 O        b'lemma:20'
-0.243733 O        b'word:20'
-0.246275 Air      b'-1:postag:CC'
-0.247467 O        b'lemma:k-12'
-0.247467 O        b'word:K-12'
-0.265976 O        b'lemma:glucose'
-0.265976 O        b'word:glucose'
-0.271369 O        b'+1:word:C'
-0.274901 O        b'-1:lemma:the'
-0.284581 O        b'-1:word:the'
-0.284785 O        b'+1:lemma:supplement'
-0.284785 O        b'+1:word:supplemented'
-0.285764 pH       b'postag:NN'
-0.293864 pH       b'isUpper'
-0.308118 Air      b'-1:lemma:or'
-0.308118 Air      b'-1:word:or'
-0.310139 Gtype    b'-1:postag:CD'
-0.322263 Supp     b'postag:CC'
-0.324104 O        b'-1:lemma:cra'
-0.328286 O        b'lemma:37'
-0.328286 O        b'word:37'
-0.330168 O        b'word:ChIP-exo'
-0.334656 O        b'-1:lemma:37'
-0.334656 O        b'-1:word:37'
-0.340095 Anti     b'isUpper'
-0.342430 O        b'-1:lemma:n2'
-0.342430 O        b'-1:word:N2'
-0.348188 O        b'-1:lemma:mm'
-0.348188 O        b'-1:word:mM'
-0.350821 Supp     b'+1:lemma:fructose'
-0.350821 Supp     b'+1:word:fructose'
-0.352833 O        b'+1:postag:IN'
-0.355440 O        b'-1:postag:-LRB-'
-0.358948 O        b'+1:postag:-LRB-'
-0.368508 O        b'lemma:fructose'
-0.368508 O        b'word:fructose'
-0.369578 Gtype    b'+1:postag:CD'
-0.370939 O        b'lemma:aerobically'
-0.370939 O        b'word:aerobically'
-0.372723 O        b'lemma:\xce\xb4fur'
-0.372723 O        b'word:\xce\x94fur'
-0.374885 Supp     b'+1:lemma:acetate'
-0.374885 Supp     b'+1:word:acetate'
-0.383718 O        b'-1:lemma:ph'
-0.383718 O        b'-1:word:pH'
-0.388799 O        b'-1:lemma:rpob'
-0.388799 O        b'-1:word:RpoB'
-0.388879 O        b'word:cells'
-0.392268 Supp     b'-1:lemma:-lrb-'
-0.392268 Supp     b'-1:word:-LRB-'
-0.394884 O        b'+1:postag:-RRB-'
-0.401778 O        b'lemma:minimal'
-0.401778 O        b'word:minimal'
-0.405443 O        b'+1:lemma:2.0'
-0.405443 O        b'+1:word:2.0'
-0.409365 O        b'lemma:medium'
-0.409365 O        b'word:medium'
-0.416217 O        b'-1:lemma:until'
-0.416217 O        b'-1:word:until'
-0.422801 O        b'+1:lemma:until'
-0.422801 O        b'+1:word:until'
-0.422973 O        b'lemma:nitrate'
-0.422973 O        b'word:nitrate'
-0.424570 O        b'-1:lemma:co2'
-0.424570 O        b'-1:word:CO2'
-0.426175 Supp     b'-1:postag:-LRB-'
-0.430390 O        b'-1:lemma:dissolve'
-0.430390 O        b'+1:lemma:methanol'
-0.430390 O        b'-1:word:dissolved'
-0.430390 O        b'+1:word:methanol'
-0.431326 O        b'-1:lemma:chip-exo'
-0.434536 Med      b'-1:postag:NN'
-0.437879 Supp     b'+1:lemma:nacl'
-0.437879 Supp     b'+1:word:NaCl'
-0.438271 Gtype    b'+1:lemma:-lrb-'
-0.438271 Gtype    b'+1:word:-LRB-'
-0.517777 O        b'lemma:0.3'
-0.517777 O        b'word:0.3'
-0.554787 O        b'+1:lemma:+'
-0.554787 O        b'+1:word:+'
-0.556538 Med      b'+1:postag:IN'
-0.560443 Med      b'-1:postag:IN'
-0.564073 Phase    b'isUpper'
-0.567749 O        b'lemma:mid-log'
-0.567749 O        b'word:mid-log'
-0.569865 O        b'+1:lemma:mm'
-0.569865 O        b'+1:word:mM'
-0.574929 O        b'+1:lemma:at'
-0.574929 O        b'+1:word:at'
-0.576720 O        b'lemma:methanol'
-0.576720 O        b'word:methanol'
-0.582128 O        b'-1:lemma:\xe2\x88\x86'
-0.582128 O        b'-1:word:\xe2\x88\x86'
-0.586115 O        b'lemma:anaerobically'
-0.586115 O        b'word:anaerobically'
-0.586317 pH       b'isLower'
-0.602158 O        b'lemma:30'
-0.602158 O        b'word:30'
-0.604997 O        b'+1:lemma:g/l'
-0.604997 O        b'+1:word:g/L'
-0.607721 O        b'+1:lemma:1m'
-0.607721 O        b'+1:word:1M'
-0.633619 O        b'-1:postag:IN'
-0.635683 O        b'-1:lemma:30'
-0.635683 O        b'-1:word:30'
-0.637769 O        b'-1:lemma:ml'
-0.637769 O        b'-1:word:ml'
-0.669793 Air      b'postag:NN'
-0.682250 O        b'+1:word:ChIP-exo'
-0.688742 O        b'lemma:of'
-0.688742 O        b'word:of'
-0.712089 Air      b'+1:postag:JJ'
-0.712952 O        b'-1:lemma:1'
-0.712952 O        b'-1:word:1'
-0.726205 O        b'lemma:2h'
-0.726205 O        b'-1:lemma:additional'
-0.726205 O        b'word:2h'
-0.726205 O        b'-1:word:additional'
-0.727554 O        b'-1:postag::'
-0.740726 O        b'-1:lemma:nsrr'
-0.740726 O        b'-1:word:NsrR'
-0.747068 Temp     b'postag:NN'
-0.802318 O        b'lemma:nitrogen'
-0.802318 O        b'word:nitrogen'
-0.820825 Supp     b'+1:postag:VBN'
-0.826345 O        b'lemma:media'
-0.826345 O        b'word:media'
-0.827286 O        b'-1:lemma:2'
-0.827286 O        b'-1:word:2'
-0.831918 O        b'-1:lemma:IP'
-0.831918 O        b'-1:word:IP'
-0.838607 O        b'-1:lemma:fresh'
-0.838607 O        b'-1:word:fresh'
-0.854504 O        b'lemma:wt'
-0.854588 Supp     b'-1:postag:NNP'
-0.874101 O        b'postag:RB'
-0.937975 Agit     b'isUpper'
-0.956352 O        b'+1:lemma:in'
-0.956352 O        b'+1:word:in'
-0.979766 O        b'+1:lemma:1'
-0.979766 O        b'+1:word:1'
-0.982287 Gtype    b'isLower'
-0.999251 Technique b'isNumber'
-1.074766 O        b'postag:VBP'
-1.110753 Gtype    b'isUpper'
-1.116498 O        b'+1:postag:VBG'
-1.181571 Supp     b'+1:postag:-LRB-'
-1.192346 O        b'-1:lemma:sample'
-1.216569 Supp     b'+1:lemma:-lrb-'
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