********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70.txt

best params:{'c1': 0.04223966754804299, 'c2': 0.014836666503726496}
best CV score:0.879077327666518
model size: 0.17M

Flat F1: 0.7889011067174645
             precision    recall  f1-score   support

         OD      1.000     0.818     0.900        22
         pH      1.000     1.000     1.000         8
  Technique      1.000     0.913     0.955        23
        Med      1.000     0.962     0.981        53
       Temp      0.923     0.828     0.873        29
       Vess      1.000     1.000     1.000         1
       Agit      0.000     0.000     0.000         0
      Phase      0.882     1.000     0.938        15
        Air      0.556     0.362     0.439        69
       Anti      1.000     1.000     1.000        11
     Strain      0.000     0.000     0.000         1
      Gtype      0.864     0.824     0.843        85
  Substrain      0.000     0.000     0.000         0
       Supp      0.716     0.791     0.752       134
   Gversion      0.000     0.000     0.000         0

avg / total      0.811     0.776     0.789       451


Top likely transitions:
Temp   -> Temp    6.132401
Agit   -> Agit    5.867978
Med    -> Med     5.493382
Anti   -> Anti    4.899201
Gversion -> Gversion 4.720775
OD     -> OD      4.580439
Gtype  -> Gtype   4.270714
Supp   -> Supp    4.146870
O      -> O       4.001305
Phase  -> Phase   3.777096
Air    -> Air     3.280795
Technique -> Technique 3.042386
pH     -> pH      2.638890
Substrain -> Gtype   0.639428
O      -> Technique 0.597359
O      -> Gtype   0.301586
Med    -> O       0.113620
Gtype  -> Air     0.032970
Air    -> O       0.023112
Temp   -> O       0.007528
O      -> Temp    0.000729
Agit   -> O       -0.000016
Supp   -> Technique -0.000031
O      -> Strain  -0.002771
Phase  -> Air     -0.018013
Technique -> OD      -0.019361
Supp   -> OD      -0.031281
pH     -> Supp    -0.038004
Air    -> Gtype   -0.060170
OD     -> Supp    -0.078565
Anti   -> Gtype   -0.100971
Gtype  -> Phase   -0.118162
Gtype  -> Anti    -0.120765
Air    -> Agit    -0.147345
Air    -> Temp    -0.149520
Anti   -> Air     -0.164013
Gversion -> Supp    -0.166044
Anti   -> O       -0.170392
Gtype  -> OD      -0.173948
Anti   -> Supp    -0.206647
Air    -> Technique -0.220913
Technique -> Gtype   -0.276956
Supp   -> Phase   -0.297344
Air    -> Phase   -0.306210
O      -> Supp    -0.348583
O      -> Med     -0.368131
Phase  -> OD      -0.382985
O      -> Phase   -0.399249
OD     -> Air     -0.479222
Phase  -> Supp    -0.503166


Top unlikely transitions:
Agit   -> O       -0.000016
Supp   -> Technique -0.000031
O      -> Strain  -0.002771
Phase  -> Air     -0.018013
Technique -> OD      -0.019361
Supp   -> OD      -0.031281
pH     -> Supp    -0.038004
Air    -> Gtype   -0.060170
OD     -> Supp    -0.078565
Anti   -> Gtype   -0.100971
Gtype  -> Phase   -0.118162
Gtype  -> Anti    -0.120765
Air    -> Agit    -0.147345
Air    -> Temp    -0.149520
Anti   -> Air     -0.164013
Gversion -> Supp    -0.166044
Anti   -> O       -0.170392
Gtype  -> OD      -0.173948
Anti   -> Supp    -0.206647
Air    -> Technique -0.220913
Technique -> Gtype   -0.276956
Supp   -> Phase   -0.297344
Air    -> Phase   -0.306210
O      -> Supp    -0.348583
O      -> Med     -0.368131
Phase  -> OD      -0.382985
O      -> Phase   -0.399249
OD     -> Air     -0.479222
Phase  -> Supp    -0.503166
Supp   -> Air     -0.513142
Phase  -> O       -0.522452
Air    -> Med     -0.532689
Gtype  -> Med     -0.539650
Technique -> Supp    -0.572989
Gtype  -> Technique -0.595348
Temp   -> Med     -0.595579
Supp   -> Gtype   -0.613937
Agit   -> Air     -0.625302
OD     -> O       -0.641071
Gversion -> O       -0.641193
Technique -> pH      -0.782400
Supp   -> O       -0.786822
Supp   -> Med     -0.932343
Air    -> Supp    -0.964410
Technique -> O       -1.106191
O      -> OD      -1.374945
Gtype  -> O       -1.475612
Substrain -> O       -1.620808
Med    -> Supp    -1.753990
O      -> Air     -1.843623


Top positive:
5.458764 Anti     b'-2:lemma:antibody'
4.034933 O        b'-2:lemma:_'
3.995360 Technique b'lemma[:2]:Ch'
3.737588 O        b'lemma[:2]:re'
3.686472 Gtype    b'lemma[:1]:\xce\xb4'
3.552793 Phase    b'-2:lemma:phase'
3.469041 Air      b'word:Aerobic'
3.439462 O        b'lemma:2'
3.439462 O        b'word:2'
3.243564 Air      b'lemma:anaerobic'
3.182295 Supp     b'-1:word:Cra'
3.047566 Gtype    b'-2:lemma:genotype/variation'
3.006963 O        b'-2:lemma:medium'
2.984615 O        b'lemma:1'
2.984615 O        b'word:1'
2.738121 O        b'lemma:-'
2.738121 O        b'word:-'
2.718196 O        b'+1:postag:RB'
2.700586 O        b'word:Cra'
2.653876 Supp     b'+2:lemma:iptg'
2.620648 O        b'lemma:with'
2.620648 O        b'word:with'
2.599865 O        b'lemma:_'
2.599865 O        b'lemma[:1]:_'
2.599865 O        b'word:_'
2.575314 Med      b'+2:postag:CC'
2.571913 Supp     b'lemma:arginine'
2.568347 O        b'word:A'
2.546240 Gtype    b'lemma[:2]:pk'
2.527855 O        b'lemma:3'
2.527855 O        b'word:3'
2.379121 O        b'-1:lemma:ChIP-exo'
2.355972 O        b'lemma[:2]:ge'
2.355054 Technique b'lemma[:2]:rn'
2.341062 Supp     b'lemma:pq'
2.341062 Supp     b'lemma[:2]:pq'
2.341062 Supp     b'word:PQ'
2.297430 O        b'+2:lemma:cra'
2.280338 O        b'+2:lemma:\xc2\xb0c'
2.251142 O        b'+2:lemma:70'
2.245883 Gtype    b'word:WT'
2.241264 Air      b'word:Anaerobic'
2.237739 Supp     b'+2:lemma:for'
2.234179 Anti     b'+2:lemma:antibody'
2.153589 O        b'-1:lemma:tag'
2.117142 O        b'lemma[:1]:h'
2.088934 Air      b'lemma[:2]:ae'
2.076795 Technique b'word:ChIPSeq'
2.068935 Gtype    b'hGreek'
2.047132 O        b'-2:lemma:mid-log'
2.041924 O        b'lemma:.'
2.041924 O        b'postag:.'
2.041924 O        b'postag[:1]:.'
2.041924 O        b'word:.'
2.032495 Gtype    b'-1:lemma:\xe2\x88\x86'
2.032495 Gtype    b'-1:word:\xe2\x88\x86'
2.016938 Gtype    b'lemma[:1]:w'
2.000225 O        b'+2:lemma:fructose'
1.992930 Supp     b'-1:lemma:with'
1.992930 Supp     b'-1:word:with'
1.991763 Gtype    b'-2:lemma:delta'
1.990954 Substrain b'lemma[:2]:mg'
1.983708 Phase    b'+2:lemma:o.d.'
1.977886 Supp     b'-1:lemma:Cra'
1.960916 Phase    b'lemma:mid-log'
1.960916 Phase    b'word:mid-log'
1.958437 Phase    b'lemma[:2]:ex'
1.945077 Supp     b'-1:postag:CC'
1.944452 Substrain b'lemma[:1]:m'
1.940793 Gtype    b'lemma:type'
1.940793 Gtype    b'lemma[:2]:ty'
1.940793 Gtype    b'word:type'
1.931978 Technique b'lemma:chipseq'
1.906924 O        b'+1:postag:NNP'
1.904357 O        b'lemma:b'
1.904357 O        b'word:B'
1.900770 O        b'-1:word:tag'
1.894287 Technique b'lemma:ChIP-exo'
1.866276 Technique b'lemma[:1]:C'
1.856571 O        b'-1:word:Aerobic'
1.849985 Supp     b'lemma:Iron'
1.849985 Supp     b'lemma[:2]:Ir'
1.849985 Supp     b'word:Iron'
1.849985 Supp     b'+1:word:Deficient'
1.849985 Supp     b'-2:lemma:Anaerobic'
1.843831 Supp     b'lemma:acetate'
1.843831 Supp     b'word:acetate'
1.843349 Air      b'lemma[:1]:A'
1.840981 Supp     b'-2:lemma:media'
1.831812 Technique b'lemma[:2]:ch'
1.820538 Gtype    b'-2:postag:DT'
1.819950 Supp     b'-1:lemma:+'
1.819950 Supp     b'-1:word:+'
1.813584 Air      b'lemma[:1]:a'
1.788160 Gversion b'word:ChIP-Seq'
1.786490 Gtype    b'-2:lemma:genotype'
1.771090 Gtype    b'+1:lemma:type'
1.771090 Gtype    b'+1:word:type'
1.765859 Gtype    b'-2:lemma:affyexp'
1.729836 Gversion b'lemma:chip-seq'
1.715972 Air      b'lemma[:2]:an'
1.702637 O        b'-2:lemma:myc'
1.701777 O        b'-2:lemma:flagtag'
1.685559 Supp     b'-2:lemma:agent'
1.676248 Supp     b'lemma[:1]:n'
1.665235 Technique b'symb'
1.650041 Technique b'-1:lemma:chip-exo'
1.645472 O        b'-1:lemma:anaerobic'
1.628175 Gtype    b'lemma[:2]:ar'
1.620209 Supp     b'postag:VBP'
1.612275 O        b'isLower'
1.611690 O        b'+1:lemma:pq'
1.611690 O        b'+1:word:PQ'
1.609561 Supp     b'lemma[:1]:I'
1.608561 O        b'-1:lemma:media'
1.608561 O        b'-1:word:media'
1.597175 Med      b'isUpper'
1.593363 Gtype    b'lemma:wt'
1.593363 Gtype    b'lemma[:2]:wt'
1.593216 Med      b'+2:lemma:b2'
1.592123 Supp     b'-2:lemma:induce'
1.590184 Air      b'lemma:Aerobic'
1.590184 Air      b'lemma[:2]:Ae'
1.571628 Phase    b'lemma:stationary'
1.571628 Phase    b'word:stationary'
1.555960 Gtype    b'lemma[:1]:f'
1.552005 Med      b'lemma:MOPS'
1.552005 Med      b'lemma[:1]:M'
1.552005 Med      b'lemma[:2]:MO'
1.552005 Med      b'word:MOPS'
1.545220 Technique b'word:ChIP-Seq'
1.544051 Supp     b'lemma[:2]:gl'
1.540691 O        b'-1:lemma:0.3'
1.540691 O        b'-1:word:0.3'
1.540357 Supp     b'-2:lemma:argr'
1.535458 Gtype    b'symb'
1.531560 O        b'-2:lemma:fructose'
1.530754 O        b'-1:lemma:lb'
1.530754 O        b'-1:word:LB'
1.528067 Supp     b'-1:lemma:final'
1.528067 Supp     b'-1:word:final'
1.513494 Phase    b'-2:lemma:until'
1.493341 Supp     b'lemma:fructose'
1.493341 Supp     b'word:fructose'
1.491583 Technique b'-1:lemma:input'
1.491583 Technique b'-1:word:Input'
1.487376 Supp     b'lemma[:2]:ac'
1.472895 pH       b'+1:postag:CD'
1.458550 O        b'-1:lemma:glucose'
1.458550 O        b'-1:word:glucose'
1.450710 Gtype    b'-1:postag:VBG'
1.450118 Air      b'-1:postag::'
1.449701 Supp     b'+1:lemma:\xc2\xb5m'
1.449701 Supp     b'+1:word:\xc2\xb5M'
1.430882 O        b'+1:lemma:mid-log'
1.430882 O        b'+1:word:mid-log'
1.420013 Strain   b'+1:lemma:substr'
1.420013 Strain   b'+1:word:substr'
1.420013 Strain   b'-2:lemma:str'
1.408799 O        b'lemma:Custom'
1.408799 O        b'lemma[:2]:Cu'
1.408799 O        b'word:Custom'
1.401545 O        b'lemma:chip'
1.400074 O        b'lemma[:1]:C'
1.398389 Gtype    b'lemma[:2]:wi'
1.394023 O        b'lemma:rpob'
1.394023 O        b'word:RpoB'
1.389762 Supp     b'-2:lemma:supplement'
1.388021 Supp     b'lemma[:2]:ni'
1.387197 Phase    b'lemma[:1]:e'
1.380149 Air      b'postag:RB'
1.380149 Air      b'postag[:1]:R'
1.380149 Air      b'postag[:2]:RB'
1.378405 O        b'lemma:a'
1.377531 O        b'+1:word:ChIP-Seq'
1.375054 Technique b'+2:lemma:ph5'
1.371660 Anti     b'+1:lemma:antibody'
1.371660 Anti     b'+1:word:antibody'
1.355865 O        b'postag:VBN'
1.352947 OD       b'lemma:0.3'
1.352947 OD       b'word:0.3'
1.351689 Phase    b'+1:lemma:phase'
1.351689 Phase    b'+1:word:phase'
1.350446 pH       b'lemma[:2]:ph'
1.341756 O        b'isNumber'
1.330917 Supp     b'+1:lemma:1'
1.330917 Supp     b'+1:word:1'
1.327538 Gversion b'-2:lemma:build'
1.323732 O        b'lemma:ompr'
1.323732 O        b'word:OmpR'
1.322881 Air      b'+1:postag:IN'
1.322130 Temp     b'-1:lemma:43'
1.322130 Temp     b'-1:word:43'
1.298940 O        b'-1:lemma:aerobically'
1.298940 O        b'-1:word:aerobically'
1.297300 OD       b'lemma[:1]:o'
1.295797 Med      b'+1:lemma:0.4'
1.295797 Med      b'+1:word:0.4'
1.282176 O        b'+2:postag:JJ'
1.271164 O        b'+2:lemma:polyclonal'


Top negative:
-0.367697 Supp     b'-1:postag:-LRB-'
-0.371915 O        b'-2:lemma:fresh'
-0.376710 O        b'+2:lemma:fnr'
-0.377206 O        b'lemma:2h'
-0.377206 O        b'-1:lemma:additional'
-0.377206 O        b'lemma[:2]:2h'
-0.377206 O        b'word:2h'
-0.377206 O        b'-1:word:additional'
-0.379729 O        b'-2:postag:-LRB-'
-0.380849 Air      b'-1:postag:JJ'
-0.381928 Strain   b'isLower'
-0.382657 Med      b'-1:postag:IN'
-0.383403 O        b'-2:lemma:at'
-0.384281 Technique b'postag:NN'
-0.389220 O        b'-1:lemma:until'
-0.389220 O        b'-1:word:until'
-0.393047 O        b'lemma[:1]:4'
-0.393058 O        b'+2:lemma:follow'
-0.393999 O        b'-1:lemma:control'
-0.393999 O        b'-1:word:control'
-0.395395 O        b'lemma[:2]:0.'
-0.396201 O        b'-2:lemma:minimal'
-0.397167 O        b'lemma:37'
-0.397167 O        b'lemma[:2]:37'
-0.397167 O        b'word:37'
-0.397928 Gtype    b'lemma[:1]:g'
-0.404533 O        b'lemma:glucose'
-0.404533 O        b'word:glucose'
-0.408273 O        b'lemma:30'
-0.408273 O        b'word:30'
-0.409885 O        b'-2:lemma:supplement'
-0.411648 O        b'+1:lemma:mm'
-0.411648 O        b'+1:word:mM'
-0.412683 O        b'+2:lemma:at'
-0.413401 O        b'-2:lemma:of'
-0.419317 O        b'-2:postag:RB'
-0.420417 Temp     b'isLower'
-0.424626 O        b'+1:lemma:phase'
-0.424626 O        b'+1:word:phase'
-0.426973 Supp     b'lemma[:1]:s'
-0.427251 O        b'lemma:wt'
-0.427251 O        b'lemma[:2]:wt'
-0.434566 O        b'+2:lemma:mid-log'
-0.434970 O        b'lemma[:1]:0'
-0.440663 O        b'-1:lemma:37'
-0.440663 O        b'-1:word:37'
-0.441568 Temp     b'-2:postag:NN'
-0.443930 O        b'lemma[:1]:\xce\xb4'
-0.458877 O        b'-1:lemma:mm'
-0.458877 O        b'-1:word:mM'
-0.463660 Supp     b'+1:postag:NNS'
-0.463834 O        b'lemma:media'
-0.463834 O        b'word:media'
-0.464229 O        b'-2:lemma:a'
-0.482105 O        b'-1:lemma:\xe2\x88\x86'
-0.482105 O        b'-1:word:\xe2\x88\x86'
-0.485832 O        b'+1:word:ChIP-exo'
-0.487845 Supp     b'hGreek'
-0.488218 O        b'-2:lemma:nh4cl'
-0.497873 Supp     b'+2:postag:NNP'
-0.503699 O        b'-2:lemma:genome'
-0.505194 O        b'+2:lemma:b'
-0.506273 O        b'-1:lemma:IP'
-0.506273 O        b'-1:word:IP'
-0.506359 O        b'-1:lemma:nsrr'
-0.506359 O        b'-1:word:NsrR'
-0.506668 O        b'lemma[:1]:L'
-0.507329 O        b'+1:postag:VBG'
-0.511337 O        b'+1:lemma:2.0'
-0.511337 O        b'+1:word:2.0'
-0.514855 Gtype    b'lemma[:1]:h'
-0.521122 Med      b'-1:postag:NN'
-0.525468 O        b'+1:lemma:until'
-0.525468 O        b'+1:word:until'
-0.529295 Med      b'postag[:1]:C'
-0.531677 O        b'+1:lemma:+'
-0.531677 O        b'+1:word:+'
-0.535215 O        b'lemma[:2]:ar'
-0.537907 O        b'lemma[:2]:gl'
-0.550679 Air      b'isLower'
-0.551345 O        b'-1:lemma:ml'
-0.551345 O        b'-1:word:ml'
-0.555528 Supp     b'+1:lemma:,'
-0.555528 Supp     b'+1:postag:,'
-0.555528 Supp     b'+1:word:,'
-0.562680 Gtype    b'lemma[:1]:s'
-0.564487 O        b'lemma[:1]:p'
-0.574109 Agit     b'symb'
-0.582388 O        b'-2:postag:DT'
-0.587178 O        b'-2:lemma:rpob'
-0.589072 O        b'+2:lemma:.'
-0.589072 O        b'+2:postag:.'
-0.595658 O        b'+1:lemma:g/l'
-0.595658 O        b'+1:word:g/L'
-0.596954 O        b'-2:postag:SYM'
-0.599195 O        b'-1:lemma:rpob'
-0.599195 O        b'-1:word:RpoB'
-0.604186 O        b'+2:lemma:250'
-0.608815 Supp     b'+1:lemma:-lrb-'
-0.608815 Supp     b'+1:word:-LRB-'
-0.609845 Anti     b'isUpper'
-0.610591 Technique b'isNumber'
-0.617650 O        b'-1:lemma:co2'
-0.617650 O        b'-1:word:CO2'
-0.622948 Supp     b'+1:postag:-LRB-'
-0.641001 Agit     b'hUpper'
-0.641001 Agit     b'hLower'
-0.645491 O        b'+1:postag:IN'
-0.647159 Gtype    b'postag[:1]:V'
-0.647159 Gtype    b'postag[:2]:VB'
-0.659968 O        b'lemma[:2]:ri'
-0.661117 Anti     b'+2:postag:JJ'
-0.661585 O        b'-1:lemma:1'
-0.661585 O        b'-1:word:1'
-0.666026 O        b'lemma:mid-log'
-0.666026 O        b'word:mid-log'
-0.667310 O        b'-2:lemma:pahse'
-0.680963 Anti     b'+2:lemma:polyclonal'
-0.685918 Supp     b'-1:postag:NNP'
-0.698925 Supp     b'-2:postag:JJ'
-0.704054 O        b'lemma[:1]:d'
-0.707980 Gtype    b'-2:lemma:\xe2\x88\x86'
-0.710771 O        b'+2:postag:-RRB-'
-0.713877 O        b'+1:lemma:at'
-0.713877 O        b'+1:word:at'
-0.722406 O        b'-2:lemma::'
-0.722643 O        b'lemma:rifampicin'
-0.722643 O        b'word:rifampicin'
-0.728674 Med      b'-2:postag:VBN'
-0.732685 Supp     b'-2:lemma:treat'
-0.742976 Anti     b'+1:lemma:anti-fur'
-0.742976 Anti     b'+1:word:anti-Fur'
-0.744610 O        b'lemma[:1]:k'
-0.745118 O        b'-2:lemma:aerobically'
-0.745353 O        b'lemma:anaerobic'
-0.747402 O        b'+1:lemma:in'
-0.747402 O        b'+1:word:in'
-0.757568 O        b'+2:lemma:tag'
-0.766874 O        b'lemma[:1]:I'
-0.768100 O        b'-1:postag::'
-0.770179 O        b'-1:lemma:2'
-0.770179 O        b'-1:word:2'
-0.779152 Gtype    b'isNumber'
-0.782788 Technique b'isLower'
-0.789896 Phase    b'hUpper'
-0.789896 Phase    b'hLower'
-0.799453 O        b'lemma[:1]:n'
-0.803431 pH       b'isLower'
-0.809089 O        b'-2:postag::'
-0.822848 O        b'-2:lemma:dpd'
-0.835295 Supp     b'lemma[:2]:an'
-0.862215 O        b'-2:lemma:phase'
-0.867939 Gtype    b'lemma[:1]:c'
-0.884275 Supp     b'+2:lemma:glucose'
-0.904915 Gtype    b'lemma[:1]:a'
-0.913465 O        b'-1:lemma:vol'
-0.913465 O        b'-1:word:vol'
-0.913465 O        b'-2:lemma:1/100'
-0.913465 O        b'+2:lemma:1m'
-0.930521 Supp     b'+2:postag:CD'
-0.948465 O        b'-2:lemma:rifampicin'
-0.960959 O        b'-2:lemma:until'
-0.973929 O        b'+2:lemma:+'
-0.989863 OD       b'+1:postag:NN'
-0.993812 Med      b'symb'
-1.066464 Gtype    b'+2:lemma:cra'
-1.076108 Gtype    b'isUpper'
-1.103829 O        b'lemma[:2]:ae'
-1.145933 Supp     b'-2:lemma:grow'
-1.165009 O        b'+2:lemma:then'
-1.184152 Phase    b'postag[:1]:J'
-1.184152 Phase    b'postag[:2]:JJ'
-1.216149 Gtype    b'lemma[:1]:r'
-1.241717 O        b'+2:lemma:rifampicin'
-1.245965 Gversion b'isLower'
-1.248268 O        b'lemma[:2]:30'
-1.250676 O        b'+1:lemma:1'
-1.250676 O        b'+1:word:1'
-1.261488 Phase    b'postag:JJ'
-1.293329 Anti     b'postag:NNP'
-1.311043 Supp     b'lemma[:1]:c'
-1.361957 O        b'-1:lemma:sample'
-1.486502 Phase    b'-1:postag:JJ'
-1.506572 Supp     b'+2:lemma:1'
-1.518267 Supp     b'+2:lemma:2'
-1.561744 O        b'-2:lemma:0.3'
-1.581023 O        b'-2:lemma:media'
-1.615538 Med      b'-2:lemma:grow'
-1.662192 O        b'+1:lemma:2'
-1.662192 O        b'+1:word:2'
-1.765435 Med      b'+2:postag:VBN'
-1.789575 Supp     b'+2:lemma:fructose'
-1.949737 O        b'postag:VBP'
-2.303519 O        b'-1:postag:VBG'
-2.349341 O        b'lemma[:2]:fl'
-2.351661 OD       b'+2:lemma:aerobically'
-2.480527 O        b'-1:lemma::'
-2.480527 O        b'-1:word::'
-2.674521 O        b'-1:lemma:_'
-2.674521 O        b'-1:word:_'