********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70.txt

best params:{'c1': 0.0669479769366607, 'c2': 0.03552427653715395}
best CV score:0.8806802697362962
model size: 0.10M

Flat F1: 0.8120536430169567
             precision    recall  f1-score   support

         OD      1.000     0.818     0.900        22
         pH      1.000     1.000     1.000         8
  Technique      1.000     0.913     0.955        23
        Med      1.000     0.962     0.981        53
       Temp      1.000     0.724     0.840        29
       Vess      1.000     1.000     1.000         1
       Agit      0.000     0.000     0.000         0
      Phase      0.882     1.000     0.938        15
        Air      0.543     0.362     0.435        69
       Anti      1.000     1.000     1.000        11
     Strain      0.000     0.000     0.000         1
      Gtype      0.897     0.824     0.859        85
  Substrain      0.000     0.000     0.000         0
       Supp      0.845     0.813     0.829       134
   Gversion      0.000     0.000     0.000         0

avg / total      0.859     0.776     0.812       451


Top likely transitions:
Agit   -> Agit    5.730270
Temp   -> Temp    5.261959
Supp   -> Supp    5.111767
OD     -> OD      4.977486
Med    -> Med     4.943896
Anti   -> Anti    4.412265
Phase  -> Phase   4.353663
O      -> O       4.349582
Gtype  -> Gtype   4.162337
Air    -> Air     4.071838
Gversion -> Gversion 3.889029
Technique -> Technique 3.450549
pH     -> pH      2.429439
Air    -> O       1.278594
Substrain -> Gtype   1.152727
O      -> Technique 1.138561
O      -> Supp    1.024054
O      -> Gtype   0.772226
Supp   -> O       0.646228
Gtype  -> Supp    0.519928
O      -> Temp    0.504171
Temp   -> O       0.481115
Strain -> O       0.334947
Technique -> Air     0.324028
O      -> Phase   0.301154
pH     -> O       0.231769
Med    -> O       0.204250
Gtype  -> Air     0.166981
Phase  -> O       0.107485
OD     -> O       0.025617
O      -> Anti    0.015100
O      -> pH      0.001727
Agit   -> O       0.000970
Med    -> Air     -0.000105
Gtype  -> Phase   -0.001446
Technique -> Anti    -0.022195
Temp   -> Med     -0.022384
Anti   -> Air     -0.027064
Anti   -> pH      -0.032063
Anti   -> Med     -0.071242
Gtype  -> Temp    -0.074067
Supp   -> pH      -0.076320
Technique -> Gversion -0.076908
Supp   -> Air     -0.088988
Gversion -> Supp    -0.092556
Phase  -> Gtype   -0.093077
Air    -> Agit    -0.104036
Gtype  -> OD      -0.125259
O      -> Med     -0.171632
Anti   -> Supp    -0.191856


Top unlikely transitions:
Agit   -> O       0.000970
Med    -> Air     -0.000105
Gtype  -> Phase   -0.001446
Technique -> Anti    -0.022195
Temp   -> Med     -0.022384
Anti   -> Air     -0.027064
Anti   -> pH      -0.032063
Anti   -> Med     -0.071242
Gtype  -> Temp    -0.074067
Supp   -> pH      -0.076320
Technique -> Gversion -0.076908
Supp   -> Air     -0.088988
Gversion -> Supp    -0.092556
Phase  -> Gtype   -0.093077
Air    -> Agit    -0.104036
Gtype  -> OD      -0.125259
O      -> Med     -0.171632
Anti   -> Supp    -0.191856
OD     -> Supp    -0.193758
Anti   -> Gtype   -0.221899
Technique -> Supp    -0.236281
Supp   -> Anti    -0.250851
Supp   -> Gversion -0.251041
Air    -> Med     -0.255356
Anti   -> Temp    -0.270943
Agit   -> Air     -0.311453
Gversion -> O       -0.315475
Phase  -> Supp    -0.321570
OD     -> Technique -0.323122
Supp   -> Gtype   -0.353133
Phase  -> OD      -0.387122
Gtype  -> Gversion -0.394249
Technique -> Gtype   -0.412211
Air    -> Supp    -0.516212
Phase  -> Technique -0.516308
Gtype  -> Technique -0.539638
Technique -> pH      -0.542821
Gtype  -> O       -0.557687
Air    -> Phase   -0.577013
Supp   -> Technique -0.675489
OD     -> Air     -0.707177
Technique -> O       -0.707975
Gtype  -> Anti    -0.709674
Technique -> OD      -0.723625
Gtype  -> Med     -0.763138
O      -> Air     -0.792010
Air    -> Temp    -0.840769
Substrain -> O       -1.160694
Supp   -> Med     -1.290121
Med    -> Supp    -1.935474


Top positive:
5.197607 O        b'lemma:2'
4.343474 O        b'word[:2]:re'
4.324248 O        b'-1:lemma:tag'
4.211985 O        b'lemma:3'
4.205982 Air      b'word[:2]:Ae'
4.179659 O        b'postag:IN'
3.998448 O        b'lemma:_'
3.998448 O        b'word[:1]:_'
3.980939 Gtype    b'word[:1]:\xce\x94'
3.962691 O        b'lemma:1'
3.896975 Air      b'lemma:anaerobic'
3.606216 O        b'lemma:a'
3.591195 Technique b'word[:2]:Ch'
3.572533 Air      b'word[:2]:An'
3.429263 Supp     b'+1:lemma:\xc2\xb5m'
3.284877 Supp     b'-1:lemma:Cra'
3.217008 O        b'postag::'
3.211581 Phase    b'lemma:mid-log'
3.140992 O        b'lemma:.'
3.140992 O        b'postag:.'
3.054409 Gtype    b'-1:lemma:\xe2\x88\x86'
3.047239 Gtype    b'lemma:arca8myc'
3.031972 Supp     b'-1:lemma:with'
3.031526 Supp     b'lemma:Iron'
3.031526 Supp     b'word[:2]:Ir'
2.991347 O        b'lemma:with'
2.982445 O        b'lemma:-'
2.956803 O        b'postag:CC'
2.926083 Supp     b'-1:lemma:vol'
2.918832 O        b'+1:lemma:pq'
2.903495 Supp     b'word[:1]:I'
2.883995 O        b'-1:lemma:glucose'
2.867408 O        b'-1:lemma:lb'
2.864405 O        b'word[:1]:S'
2.852569 Gtype    b'lemma:wt'
2.849941 Air      b'postag:RB'
2.776348 O        b'-1:lemma:0.3'
2.602950 Supp     b'lemma:arginine'
2.580441 O        b'word[:2]:ge'
2.565736 Gtype    b'word[:2]:Fl'
2.549904 O        b'postag:VBN'
2.541503 Med      b'word[:1]:M'
2.498908 OD       b'word[:1]:O'
2.495287 O        b'word[:2]:Cr'
2.484677 Phase    b'lemma:stationary'
2.483306 Strain   b'+1:lemma:substr'
2.457405 pH       b'word[:2]:pH'
2.456365 Supp     b'lemma:pq'
2.456365 Supp     b'word[:2]:PQ'
2.439095 O        b'lemma:delta'
2.396366 Technique b'word[:2]:RN'
2.395719 Supp     b'word[:2]:ni'
2.386055 O        b'-1:lemma:Aerobic'
2.383149 Supp     b'+1:lemma:1'
2.337551 Gtype    b'word[:1]:d'
2.326720 Supp     b'lemma:acetate'
2.325394 Supp     b'-1:lemma:+'
2.316784 Med      b'lemma:MOPS'
2.316784 Med      b'word[:2]:MO'
2.281531 Temp     b'+1:lemma:in'
2.271226 Air      b'word[:1]:A'
2.270613 Substrain b'word[:2]:MG'
2.248219 O        b'word[:1]:G'
2.216505 Supp     b'lemma:nacl'
2.208674 O        b'word[:1]:B'
2.199231 Med      b'-1:lemma:ml'
2.195586 O        b'word[:2]:Rp'
2.168321 O        b'-1:lemma:stpa'
2.152429 Supp     b'-1:lemma:sodium'
2.145539 O        b'lemma:argr'
2.134901 Substrain b'word[:1]:M'
2.133413 Air      b'word[:2]:an'
2.120670 Gtype    b'lemma:type'
2.120670 Gtype    b'word[:2]:ty'
2.118126 Med      b'word[:1]:L'
2.105700 O        b'lemma:Nac'
2.100072 O        b'lemma:purr'
2.087072 Gtype    b'word[:1]:W'
2.068635 O        b'lemma:ompr'
2.068635 O        b'word[:2]:Om'
2.063173 Supp     b'+1:lemma:mm'
2.060411 O        b'+1:lemma:od600'
2.057816 O        b'word[:2]:ch'
2.051673 Gtype    b'word[:2]:Ar'
2.022062 Gtype    b'-1:lemma:_'
2.010318 Supp     b'lemma:sodium'
2.008903 Supp     b'word[:2]:ac'
2.006175 Technique b'word[:1]:R'
2.003588 Gtype    b'lemma:flag-tag'
2.003588 Gtype    b'-1:lemma:c-terminal'
2.001858 Anti     b'+1:lemma:antibody'
2.001849 Gtype    b'hGreek'
1.999056 Phase    b'word[:2]:ex'
1.996110 O        b'lemma:b'
1.988243 Gtype    b'lemma:nsrr'
1.988243 Gtype    b'word[:2]:Ns'
1.982191 Supp     b'+1:lemma:phosphate'
1.976855 Temp     b'-1:lemma:\xcf\x8332'
1.966179 Technique b'word[:1]:C'
1.938678 Supp     b'word[:2]:Fe'
1.938022 Anti     b'word[:2]:an'
1.932248 Supp     b'-1:postag:CC'
1.911063 Phase    b'word[:1]:e'
1.907821 Gversion b'lemma:asm584v2'
1.907821 Gversion b'word[:2]:AS'
1.905625 O        b'postag:DT'
1.897238 O        b'-1:lemma:into'
1.896923 O        b'-1:lemma:0.3-0.35'
1.892887 Gversion b'-1:lemma:nc'
1.874980 Supp     b'+1:lemma:2'
1.874512 Air      b'+1:postag:IN'
1.873185 O        b'lemma:Custom'
1.873101 O        b'word[:2]:Cu'
1.872862 O        b'word[:1]:c'
1.868647 O        b'+1:lemma:or'
1.867229 Gtype    b'+1:lemma:type'
1.864929 Med      b'+1:lemma:0.4'
1.846915 O        b'lemma:A'
1.836827 O        b'-1:lemma:anaerobic'
1.829081 Supp     b'lemma:rifampicin'
1.821988 Supp     b'word[:2]:ri'
1.820197 Air      b'-1:lemma:ChIP-Seq'
1.819408 pH       b'+1:postag:CD'
1.813057 Gversion b'lemma:chip-seq'
1.808900 Phase    b'-1:lemma:mid-log'
1.800361 Supp     b'lemma:Leu'
1.800361 Supp     b'word[:2]:Le'
1.799360 Supp     b'word[:2]:gl'
1.793727 Gtype    b'word[:1]:w'
1.791679 O        b'word[:1]:E'
1.789827 Air      b'-1:lemma:-'
1.779400 Supp     b'+1:lemma:min'
1.777560 Gtype    b'word[:2]:cr'
1.777381 Technique b'lemma:ChIP-exo'
1.773352 O        b'word[:1]:R'
1.772804 O        b'+1:lemma:250'
1.772220 Gversion b'word[:2]:00'
1.767331 Supp     b'-1:lemma:final'
1.765950 O        b'-1:lemma:type'
1.751683 O        b'postag:VBG'
1.747918 O        b'word[:2]:ha'
1.733991 Gtype    b'word[:2]:PK'
1.733248 O        b'+1:lemma:mid-log'
1.721176 O        b'word[:2]:Pu'
1.718066 Technique b'lemma:chipseq'
1.715045 O        b'+1:postag:RB'
1.714257 Supp     b'lemma:Fe'
1.712494 O        b'+1:lemma:sparging'
1.710768 Gversion b'lemma:nc'
1.710768 Gversion b'word[:2]:NC'
1.706907 O        b'-1:lemma:phase'
1.695825 Air      b'-1:lemma:co2'
1.693473 Gtype    b'word[:1]:F'
1.693330 Gtype    b'word[:1]:t'
1.689604 O        b'lemma:\xcf\x8332'
1.689604 O        b'word[:1]:\xcf\x83'
1.689604 O        b'word[:2]:\xcf\x833'
1.687943 Gtype    b'+1:lemma:flagtag'
1.687830 Strain   b'-1:lemma:.'
1.687830 Strain   b'-1:postag:.'
1.680651 Gtype    b'+1:lemma:_'
1.676295 Gtype    b'-1:postag:VBG'
1.672589 Gtype    b'symb'
1.668599 Gtype    b'word[:2]:WT'
1.667990 Med      b'-1:lemma:fresh'
1.664383 Temp     b'-1:lemma:43'
1.654146 O        b'lemma:rpob'
1.652234 Strain   b'lemma:k-12'
1.652234 Strain   b'word[:2]:K-'
1.648550 Supp     b'word[:2]:30'
1.648025 Med      b'lemma:broth'
1.648025 Med      b'-1:lemma:L'
1.648025 Med      b'word[:2]:br'
1.646791 Supp     b'lemma:fructose'
1.643771 Anti     b'-1:lemma::'
1.634632 Med      b'lemma:L'
1.634632 Med      b'+1:lemma:broth'
1.627352 O        b'word[:2]:In'
1.622224 Air      b'lemma:Aerobic'
1.621209 Strain   b'word[:1]:K'
1.618073 Phase    b'-1:lemma:until'
1.612647 Air      b'word[:1]:a'
1.611079 O        b'word[:1]:C'
1.610394 O        b'+1:lemma:arca-8myc'
1.595786 Supp     b'-1:lemma:contain'
1.594864 Gtype    b'lemma:\xe2\x88\x86'
1.594864 Gtype    b'word[:1]:\xe2\x88\x86'
1.583723 Air      b'lemma:aerobic'
1.581020 O        b'-1:lemma:wt'
1.580311 O        b'word[:1]:a'
1.577732 Temp     b'-1:lemma:sample'
1.576145 Technique b'lemma:rnaseq'
1.571124 O        b'+1:postag:NNP'
1.560522 O        b'-1:lemma:media'
1.558793 O        b'+1:lemma:chip-seq'
1.555710 Supp     b'lemma:dpd'
1.555710 Supp     b'word[:2]:DP'
1.548557 O        b'lemma:at'
1.545932 Phase    b'word[:2]:st'
1.535531 Gtype    b'word[:2]:ga'


Top negative:
-0.222385 O        b'-1:lemma:n2'
-0.223068 Med      b'-1:postag:NN'
-0.229421 O        b'lemma:nitrogen'
-0.229586 Air      b'+1:lemma:-lrb-'
-0.235112 Supp     b'+1:postag::'
-0.236341 O        b'-1:lemma:of'
-0.239334 pH       b'postag:NN'
-0.246473 O        b'lemma:of'
-0.246473 O        b'word[:2]:of'
-0.248678 Gtype    b'+1:postag:CD'
-0.250091 O        b'lemma:k-12'
-0.250091 O        b'word[:2]:K-'
-0.250281 O        b'-1:postag:IN'
-0.250791 OD       b'hUpper'
-0.250791 OD       b'hLower'
-0.252179 O        b'-1:lemma:dfnr'
-0.254406 O        b'+1:lemma:sample'
-0.255303 Gtype    b'word[:1]:g'
-0.256791 Air      b'-1:postag:CC'
-0.257558 Supp     b'postag:CC'
-0.261584 O        b'-1:lemma:sodium'
-0.263082 O        b'+1:lemma:m'
-0.263509 Air      b'+1:postag:NNS'
-0.266301 O        b'-1:lemma:phosphate'
-0.266984 O        b'lemma:minimal'
-0.274317 O        b'lemma:glucose'
-0.277606 O        b'-1:lemma:with'
-0.282203 O        b'word[:2]:0.'
-0.288431 O        b'lemma:150'
-0.288431 O        b'+1:lemma:mg/ml'
-0.288431 O        b'word[:2]:15'
-0.289147 Gtype    b'word[:1]:N'
-0.289611 Gtype    b'word[:1]:h'
-0.292168 OD       b'+1:lemma:0.4'
-0.293694 Anti     b'lemma:antibody'
-0.296743 Air      b'-1:postag:VBN'
-0.305504 O        b'lemma:20'
-0.309832 O        b'word[:2]:gl'
-0.313652 O        b'lemma:\xe2\x88\x86'
-0.313652 O        b'word[:1]:\xe2\x88\x86'
-0.315980 Gtype    b'-1:lemma:-lrb-'
-0.318705 OD       b'symb'
-0.320576 O        b'lemma:1m'
-0.320576 O        b'word[:2]:1M'
-0.323557 O        b'lemma:oxyr-8myc'
-0.333499 O        b'lemma:control'
-0.336999 O        b'+1:lemma:.'
-0.336999 O        b'+1:postag:.'
-0.338184 Supp     b'word[:2]:an'
-0.339759 Supp     b'-1:lemma:%'
-0.341972 O        b'lemma:sodium'
-0.350224 O        b'+1:lemma:-rrb-'
-0.357360 Gtype    b'+1:lemma:-lrb-'
-0.359089 O        b'-1:postag:-LRB-'
-0.359269 Supp     b'+1:lemma:rifampicin'
-0.361354 Phase    b'+1:postag:NN'
-0.369958 O        b'-1:lemma:g/l'
-0.370938 O        b'+1:lemma:ph'
-0.380417 O        b'-1:lemma:control'
-0.393185 O        b'+1:lemma:1/100'
-0.401365 O        b'+1:lemma:arginine'
-0.402963 Gtype    b'postag:VBG'
-0.406830 Technique b'-1:lemma::'
-0.407359 O        b'word[:1]:d'
-0.408895 O        b'+1:postag:-RRB-'
-0.410325 O        b'word[:2]:cr'
-0.414862 O        b'lemma:media'
-0.417218 Supp     b'lemma:1'
-0.421741 Air      b'+1:postag:JJ'
-0.422308 Air      b'symb'
-0.424867 O        b'lemma:purify'
-0.426894 O        b'+1:lemma:phosphate'
-0.427754 Med      b'-1:postag:CD'
-0.432980 O        b'-1:lemma:mm'
-0.439910 Gtype    b'word[:1]:A'
-0.452411 Supp     b'-1:lemma:dpd'
-0.458153 O        b'word[:2]:OD'
-0.458602 Supp     b'+1:lemma:nacl'
-0.460350 O        b'-1:lemma:delta'
-0.460942 Gtype    b'postag::'
-0.461016 O        b'+1:postag:VBG'
-0.466602 O        b'+1:lemma:supplement'
-0.469862 Temp     b'postag:NN'
-0.479736 O        b'word[:2]:ae'
-0.482738 O        b'-1:lemma:250'
-0.495883 O        b'-1:lemma:37'
-0.497098 O        b'-1:lemma:1m'
-0.499515 Supp     b'+1:lemma:fructose'
-0.499529 O        b'-1:lemma:iptg'
-0.509960 Anti     b'+1:lemma:anti-fur'
-0.519769 O        b'lemma:37'
-0.519769 O        b'word[:2]:37'
-0.522094 O        b'lemma:fructose'
-0.522953 O        b'lemma:aerobically'
-0.529231 O        b'+1:lemma:for'
-0.535592 Agit     b'hUpper'
-0.535592 Agit     b'hLower'
-0.542571 Supp     b'-1:lemma:-lrb-'
-0.543730 Temp     b'-1:lemma:\xc2\xb0c'
-0.544383 O        b'word[:1]:0'
-0.549506 Technique b'-1:postag::'
-0.551118 Supp     b'+1:lemma:acetate'
-0.566147 O        b'-1:lemma:cra'
-0.569703 O        b'word[:1]:4'
-0.572560 O        b'word[:2]:ce'
-0.574858 Supp     b'postag:CD'
-0.595300 O        b'+1:postag:IN'
-0.599638 Supp     b'-1:postag:NNP'
-0.605965 O        b'word[:1]:M'
-0.612343 Agit     b'symb'
-0.615100 O        b'+1:lemma:_'
-0.618065 O        b'-1:lemma:30'
-0.631349 Supp     b'-1:postag:-LRB-'
-0.639788 O        b'-1:lemma:\xe2\x88\x86'
-0.646356 O        b'lemma:mid-log'
-0.668003 O        b'lemma:2h'
-0.668003 O        b'-1:lemma:additional'
-0.668003 O        b'word[:2]:2h'
-0.672963 Temp     b'hGreek'
-0.687801 Gtype    b'+1:lemma:-rrb-'
-0.688426 O        b'lemma:aerobic'
-0.690108 Med      b'+1:postag:IN'
-0.690593 Gtype    b'word[:1]:-'
-0.696545 O        b'+1:lemma:antibody'
-0.697177 Med      b'symb'
-0.699587 O        b'lemma:anaerobically'
-0.699918 O        b'+1:lemma:1m'
-0.707099 O        b'word[:1]:F'
-0.708674 O        b'word[:2]:30'
-0.745965 O        b'word[:1]:K'
-0.785524 Supp     b'+1:postag:VBN'
-0.788643 O        b'lemma:soxs-8myc'
-0.799607 O        b'-1:lemma:dissolve'
-0.799607 O        b'+1:lemma:methanol'
-0.800538 O        b'-1:lemma:IP'
-0.808177 O        b'word[:2]:mg'
-0.823560 O        b'+1:lemma:at'
-0.823819 Med      b'-1:postag:IN'
-0.829683 Gtype    b'lemma:delta'
-0.834314 O        b'+1:lemma:until'
-0.834554 Gtype    b'-1:lemma:mg1655'
-0.837477 Phase    b'hUpper'
-0.837477 Phase    b'hLower'
-0.875134 O        b'lemma:wt'
-0.892468 O        b'+1:lemma:rep2'
-0.900925 O        b'lemma:c'
-0.911577 Supp     b'symb'
-0.935276 O        b'lemma:methanol'
-0.939294 O        b'word[:2]:me'
-0.951862 Gtype    b'word[:1]:C'
-0.957544 O        b'lemma:0.3'
-0.961774 O        b'-1:lemma:ph'
-0.982702 O        b'word[:2]:ri'
-0.994311 O        b'word[:2]:pH'
-1.000643 Air      b'-1:postag:JJ'
-1.002379 Anti     b'postag:NNP'
-1.008594 O        b'+1:lemma:+'
-1.024921 O        b'+1:lemma:mm'
-1.026429 Air      b'-1:lemma:or'
-1.033879 O        b'postag:RB'
-1.050623 O        b'+1:lemma:g/l'
-1.061501 OD       b'+1:postag:NN'
-1.074979 O        b'-1:lemma:rpob'
-1.085560 O        b'-1:lemma:1'
-1.090454 O        b'-1:lemma:final'
-1.092753 Technique b'postag:NN'
-1.092846 O        b'lemma:rifampicin'
-1.102416 O        b'-1:lemma:nsrr'
-1.118910 Supp     b'word[:1]:C'
-1.163411 O        b'word[:2]:ni'
-1.202046 O        b'postag:VBP'
-1.209582 O        b'-1:postag::'
-1.218263 O        b'-1:lemma:until'
-1.238993 Air      b'postag:NN'
-1.263449 Supp     b'hGreek'
-1.265029 O        b'word[:1]:N'
-1.315756 O        b'+1:lemma:2.0'
-1.323803 O        b'word[:2]:fl'
-1.379566 O        b'-1:lemma:ml'
-1.421957 Phase    b'postag:JJ'
-1.437134 Supp     b'postag:JJ'
-1.444357 O        b'-1:lemma:sample'
-1.460302 O        b'-1:lemma:co2'
-1.585483 Phase    b'-1:postag:JJ'
-1.638491 O        b'-1:postag:VBG'
-1.655599 O        b'-1:lemma:fresh'
-1.660989 O        b'+1:lemma:1'
-1.668500 Supp     b'+1:lemma:-lrb-'
-1.694618 Supp     b'+1:postag:-LRB-'
-1.706414 O        b'-1:lemma:2'
-1.722864 O        b'+1:lemma:in'
-1.841815 Temp     b'+1:postag:IN'
-1.876180 O        b'word[:1]:P'
-1.904317 Supp     b'+1:lemma:,'
-1.904317 Supp     b'+1:postag:,'
-2.088295 O        b'word[:2]:Ch'
-2.262332 O        b'+1:lemma:2'
-2.592460 O        b'-1:lemma:vol'
-3.316905 O        b'-1:lemma:_'
-4.428349 O        b'-1:lemma::'