SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Base calls performed with RTA v1.18.5 PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	the first ten base pairs of each read were trimmed using FASTX­Toolkit 0.0.13. PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Reads were mapped using BWA 0.7.5a PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	The number read pairs mapped to each gene was counted with HTSeq 0.6.1 PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Supplementary_files_format_and_content: A tab deliminited file with counts for each gene. PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	extract_protocol	RNA was purified from 200 µL of overnight culture by pelleting and resuspeding in 500 µL of Trizol at 65°C, followed by purification on a column (Direct-Zol, Zymo Research). Samples received two 30-minute DNase treatments using TURBO DNA-free (Ambion) following the manufacturers instructions. RNA samples were then purified on a column (RNA Clean & Concentrator, Zymo Research). Three samples were prepped from each culture and pooled to generate sufficient RNA. PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	extract_protocol	RNA libraries were prepared for sequencing using standard Illumina protocols PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	growth_protocol	Cells were inoculated from frozen cultures into 5 mL of LB, and grown.  5 µL of this overnight culture was diluted into 5 mL of LB with the appropriate concentration of arabinose, and grown for 20h. PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	source_name	E. coli culture PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	library_strategy	RNA-Seq PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	characteristics	strain: DMS2545 (K-12 derivative) PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	characteristics	rpos level: 0% PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	growth_protocol	Cells were inoculated from frozen cultures into 5 mL of LB, and grown.  5 µL of this overnight culture was diluted into 5 mL of LB with the appropriate concentration of arabinose, and grown for 20h. PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	source_name	E. coli culture PGCGROWTHCONDITIONS
SRR4416203	GSE87856	GSM2341962	GPL14548	PMID_28115545	0% rep1	The genome-wide transcriptional response to varying RpoS levels in Escherichia coli.	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	contact_name	Daniel,,Stoebel PGCGROWTHCONDITIONS