SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	data_processing	Rockhopper version 1.20 (manuscript submitted) was used for alignment, normalization, and quantification. Rockhopper is available for download from http://cs.wellesley.edu/~btjaden/Rockhopper PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	data_processing	Genome_build: K-12 substr. MG1655 genome (NC_000913.3)/ASM584v1 PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	data_processing	Supplementary_files_format_and_content: Tab delimited text files containing transcription coordinates and abundance estimates. PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	extract_protocol	Hot phenol RNA extraction as described in Aiba. Adhya and Crombrugghe. J. Bio Chem. 1981, 256: p. 11905-11910. PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	extract_protocol	Ribosomal RNA was first removed using the Ribozero rRNA Removal Meta-Bacteria kit. Enriched mRNAs were then converted into  indexed libraries using the into ScriptSeqTM v2 RNA-Seq Library Preparation Kit PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	growth_protocol	Aerobic growth at 37°C  in specified media PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	organism	Escherichia coli str. K-12 substr. MG1655 PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	source_name	Total RNA from bacterial culture PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	treatment_protocol	Cells treated during mid-exponential growth phase PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	library_strategy	RNA-Seq PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	characteristics	media: Defined MOPS Minimal + 0.4% Glycerol +0.5% 2-DG PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	characteristics	genotype: WT PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	characteristics	strain: K-12 PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	growth_protocol	Aerobic growth at 37°C  in specified media PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	organism	Escherichia coli str. K-12 substr. MG1655 PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	source_name	Total RNA from bacterial culture PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	treatment_protocol	Cells treated during mid-exponential growth phase PGCGROWTHCONDITIONS
SRR794872	GSE45443	GSM1104426	GPL15010	PMID_23716638	WT_plus_2DG_1	RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655	GPL15010: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)	contact_name	Brian,,Tjaden PGCGROWTHCONDITIONS