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nlp-preprocessing-pipeline
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Authored by
Carlos-Francisco Méndez-Cruz
2018-03-07 16:36:46 -0600
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dictionaries/genes.txt
dictionaries/genes_7grams.txt
dictionaries/genes_8grams.txt
dictionaries/genes.txt
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51cbcfb
latent membrane protein LMP 1
TGF- b
SDC2
tissue factor
JAK2
Serpin B4
WNT10A
TGFb
STAT1
pVHL
bFGF
Chop
Stat3
Thymic stromal lymphopoietin
pten
ANG converting enzyme
MT1
Semaphorin 7a
HLF
IL-10
PTEN
Tb4
Vasohibin-2
TGF-beta1
TIMP-1
H19
STIP1
HSP27
TGF-b1
MMP-3
AKT
ERK1/2
Serpin B3
miR-382
IL-1beta
MKL1
E-cadherin
endothelin-1
IL-6
ICAT
MAPKAPK2
c-jun
PEX13p
BMPER
MMP-1
PTX-2
Elk1
insulin-like growth factor-I
protease-activated receptor-2
SPP1
LC3
Receptor for advanced glycation end products
AT1
Enhancer of zeste homolog 2
ATG4B
EZH2
p38
Lefty A
TF
MyD88
CD90
Endothelin-1
Wnt1-inducible signaling protein 1
bone morphogenetic protein
tagln
IQGAP1
PINK1
miR-140
Th1
IGFBP-1
syndecan-2
interleukin IL-13
IL-13
PDGB
MMP-7
Smad3
tsp1
ARPC2
CD248
TRPV4
Protease-activated receptor-1
HDAC10
mTORC2
BMP
smad2/3
TGFb2
bone morphogenetic protein 7
Hepatocyte growth factor
hypoxia-inducible factor-1a
IL18
SMAD 3
epidermal growth factor receptor
Sgpl1
cartilage oligomeric matrix protein
Interleukin IL 8
superoxide dismutase 3
insulin-like growth factor-1
IL-17A
MT3
FRbeta
IGF-2
IL8
ZO-1
IKKa
SRF
IL-31
transforming growth factor b-1
Nox-4
IGF-1
matrix metalloproteinase-9
serum response factor
transforming growth factor beta 1
BMP3
TGF-alpha
Periostin
AKT
activin
GLP-1
IGF-2
transforming growth factor TGF-beta 1
HIF-1a
ANGII
ACE
Janus kinase type 2
bmp1
RhoA
HLF
Muc5ac
MK2
serpine1
heme oxygenase-1
Bcl-2
let-7d
VASH-2
HSP27
transforming growth factor beta
transforming growth factor b-1
transforming growth factor-beta
superoxide dismutase 3
Transforming growth factor TGF-beta1
MMP1
TNF-a
ECSOD
Sulf1
MT1
CCN1
Histone deacetylase 6
Thy-1
CD19
HAI-2
ALK5
mTORC2
Krebs Von Den Lungen-6
tumor necrosis factor-alpha
PTEN
hypoxia-inducible factor 1a
BMPR2
PI3K
transforming growth factor-beta1
Mknk2
mir-21
STIP1
TIMP-1
MT5-MMP
Serpin B3/B4
Stanniocalcin-1
Caveolin-1
HIF1a
renin
NEU1
MMP-1
Spiruchostatin A
fibroblast growth factor receptor 2
SPARC
Nox1
CC chemokine receptor 2
PEX13p
C3a
miR-31
folate receptor beta
MAP3K19
transforming growth factor b
c-Fos
ET-B
USP11
smad2/3
TNFa
PAI-1
Wnt5A
IGFBP-3
transforming growth factor-b1
prostaglandin F PGF receptor
platelet-derived growth factor isoforms PDGF A and B
smooth muscle a-actin
VCAM-1
Jun NH2-terminal kinase
miR-326
p21
MKL1
HDAC10
ITGB6
LPA1
histone deacetylase
tgfbr1/2
Transforming growth factor beta1
YY1
Caveolin-1
TNC
cyclosporine A
TGFB
S1P
Vimentin
Transforming growth factor beta
DDR2
FGF-1
FoxP3
tissue inhibitors of metalloproteinases-1
Egr-1
NFkB
discoidin domain receptor 2
protease-activated receptor PAR-2
EZH2
IQGAP1
Transforming growth factor-b1
Toll-like receptor 4
HDAC6
ltbp1/2
miR-487b
VEGF
Lin28B
Oct-4
serine protease
150-kDa oxygen-regulated protein
MicroRNA miR-221
tgfb2
CXCL10
Lefty A
phosphoinositide 3-kinase
MIG
High mobility group AT-hook 2
FAK
HAI-1
miR-9-5p
TG2
p21waf1
IL-1beta
3-hydroxy-3-methylglutaryl CoenzymeA HMG CoA reductase
N -cadherin
NOX4
miR-134
serum amyloid P
Thymosin b4
IL-13
Syndecan-2
BMP-5
YY1
SNAI2
ORP150
claudins-1, -3, and -5
mir-21
matrix metalloproteinase-3
b2 -AR
interleukin-6
TGFb1
lymphotactin
Transforming growth factor TGF-b1
TGFbeta
Keap1
MT3
MMP-3
CUX1
Bax inhibitor-1
LEF/TCF
matrix metalloproteinase-7
MCP-1
PPAR
focal adhesion kinase
FGF-2
miR -221
TbetaRII
miR-30a
bone morphogenetic protein 7
Mitogen-activated protein kinase-activated protein kinase-2
miR-17 92
TNFSF14
CD206
CTGF
Galectin-3
b2 -adrenoceptors
STUB1
LC3
WISP1
ACTA2
Osteopontin
SpA
Spiruchostatin A
SNAI1
CBP
AP-1
SMAD3
Extracellular Matrix Metalloproteinase Inducer
BMP-15
signal transducer and activator of transcription 3
TGFbeta
3-hydroxy-3-methylglutaryl CoenzymeA HMG CoA reductase
Hsp90
Smad2/3
IL-8
thrombin
peroxisome proliferator-activated receptor-y
ET-B
BARD1
periostin
CD55
AT2
CD90
TGF beta1
Serpin B3/B4
alpha-SMA
MMP1
c-Jun
CRP1
mTOR
LTBP] 1, 2, and 4
IL8, -6, and -1B
YAP
lymphotoxin beta receptor
CCN5
transforming growth factor-beta 1
TGF-b1
SGPL1
Smad3
transient receptor potential vanilloid 4
NOS
CXCL9
NADPH oxidase 4
High mobility group AT-hook 2
beta-catenin
STC1
Membrane-type MT-MMPs
follistatin
IL8
miR-424
SFTPC
alpha-smooth muscle actin
TOB2
SMA
matrix metalloprotease-1
IL-18
HO-1
SMAD2/3
Endothelin-1
cyclosporine A
megakaryoblastic leukemia 1
MT2
Pentraxin-2
miR-21
Toll-like receptor 4
matrix metalloproteinase MMP-9
Vimentin
beta-catenin
leucine-rich alpha-2 glycoprotein
HMGA2
Wnt5A
TbRII
N -cadherin
interleukin IL-6
cytokeratin 19
ANG converting enzyme
tissue factor
TRPV4
FOXF1
C/EBP homologous protein
Cysteine-rich protein 1
thrombin
insulin-like growth factor I
ALK-5
ZO-1
C3aR
SNAI2
TIAM1
SMAD2/3
TGFb-1
a-smooth muscle actin
latent membrane protein LMP 1
miR
HSP47
mothers against decapentaplegic homolog 3
RANTES
TNF-alpha
YKL-40
Smad2/3
AKT2
Nox4
Angiotensin II
transforming growth factor b expression
CXCL10
BMP-5
IFN-gammaR
miR-1343
plasminogen activator inhibitor 1
CD44
serum amyloid P
fibroblast growth factor receptor 2
PIAS4
beclin 1
p38
TNC
Transforming growth factor-beta1
MK2
CC chemokine receptor 2
HGF
Nox1
Forkhead Box F1
Rpn6
lysyl oxidase
ltbp1/2
IL-6
CCN5
Extracellular Matrix Metalloproteinase Inducer
NOX-2
Stat3
Yin Yang 1
phosphoinositide 3-kinase
transforming growth factor b1
NOX-4
TLR4
Ost-4
KCa3.1
Col1a2
phosphoglycerate dehydrogenase
miR-17 92
JNK
extent, type B receptors
caveolin-1
GLP-1
TNF-a
Endosialin
TGF-b
miR-134
Transforming growth factor-b
Aortic carboxypeptidase-like protein
FIEL1
miR-154
Sema7a
matrix metalloprotease-1
PEX13
COL1A1
TNFalpha
Matriptase
IGFBP-2
ECSOD
Bcl-2
il12p40
transforming growth factor TGF-beta 1
IP-10
NOX4
cytokeratin 19
PARP
mir-155
Vascular endothelial growth factor
HIF-1a
EMMPRIN
Sulf1
VASH-2
p300
cyclooxygenase 2
Wnt1-inducible signaling protein 1
EGFR
HGF
Bax
interleukin-6
CCL2
MMP-12
IKKa
miR-26a
SMAD2
matriptase
semaphorin-7A
Syndecan-2
ILK
beta-galactosidase
LRG
collagen Col1a1
tgfbr1/2
CXCL1
COL1A1
T beta RII
Cthrc1
transforming growth factor beta1
MAPKAPK
2
suppressor of cytokine signaling 1
Serpin B3
Pigment epithelium-derived factor
JN
K
Transforming growth factor-beta
CD25
PAR-2
Thymosin b4
Activin
Sulf2
NOX-
2
TGFBR2
thrombospondin-1
folate receptor beta
IL
K
NF-kB
matriptase
YKL-40
CCN2
ErbB2
E -cadherin
CTGF
Transforming growth factor b
IL10
HSP90
CD8
Transforming growth factor TGF-beta1
hepatocyte growth factor
Janus kinase type 2
TGFB
Th1
SMAD2
BMP3
SAP
hypoxia-inducible factor 1a
BCL-2
beta 1 integrin
Toll-like receptor 9
BARD1
MIG
Fas ligand
epidermal growth factor receptor
glucagon like peptide-1
extracellular superoxide dismutase
Chop
EMT
Smad2
ET-1
claudins-1, -3, and -5
Oct-4
CD19
SGPL1
il17a
microRNA miR-155
Mmp19
Akt2
poly-ADP ribose polymerase
C5a
bone morphogenetic protein
PINK1
TGF-beta 1
Histone deacetylase 6
transforming growth factor-b
Lrp5
extent, type B receptors
IL-31
TGF beta1
integrin-linked kinase
NFkB
TGFBR2
PPAR-a
PDGF-b
transgelin
HAI-1
Trx
PAR-1
Enhancer of zeste homolog 2
SIRT6
ACLP
miR-140
miR-338
n-cadherin
interleukin-8
prostaglandin F PGF receptor
collagen Col1a1
PHLPP
FRNK
thrombospondin-1
Semaphorin 7a
signal transducer and activator of transcription 3
BMP-15
cyclooxygenase 2
Forkhead Box F1
HMGA2
b2 -AR
CD34
pVHL
BI-1
C1q
Serpin B4
H19
STUB1
FoxP3
serum albumin HSA-thioredoxin 1
SOD3
p65
cytosolic phospholipase A2
TGF-b-1
Fstl1
Smad4
AAG
plasminogen activator inhibitor-1
IGFBP-3
follistatin
S1P
CD25
TNFalpha
TGF-beta
miR-29a
LEF/TCF
Wt1
TGFb-1
ALK5
transgelin
Atg4b
interleukin IL-1b
igf1
RhoA
interleukin IL-1beta
mPGES-1
Nox4
TLR9
PAI-1
ET-A
PDGFR
vimentin
BMP-7
PDGF-B
Rictor
WISP1
interleukin-1beta
mTOR
focal adhesion kinase-related nonkinase
TSLP
IL-10
MMP-7
Transforming growth factor-beta1
Akt
SpA
CD11c
Foxp-3
PARP
STAT3
MMP2
PDGB
tsp1
discoidin domain receptor 2
Smad 7
Semaphorin-7A
IGF-I
CD4
FGF-1
E-cadherin
TGFb
TNF-alpha
Insulin-like growth factor-1
Sema7a
fibronectin
terminal deoxynucleotidyl transferase
cytosolic phospholipase A2
TNFa
PEX13
PDGF-B
NEU1
tenascin-C
Transforming growth factor beta 1
CUX1
Transforming growth factor beta
acyl-CoA oxidase 1
Fstl1
C5aR
ANGII
ITGB6
Angiotensin II
Interleukin 17A
Pigment epithelium-derived factor
transforming growth factor-beta1
Snail
ACE
SPP1
vimentin
Matriptase
P53
MMP-2
TGF-b-1
nuclear factor erythroid 2-related factor 2
Periostin
PDGF-A
SAP
Transglutaminase 2
Transforming growth factor-beta
Sema 7a
tagln
monocyte chemoattractant protein 1
GR
Collagen Triple Helix Repeat-Containing-1
Thy-1
interleukin IL-13
C/EBP homologous protein
RAGE
miR-1343
transforming growth factor beta-1
b-FGF
beta-gal
smoothened
miR-5100
alpha-smooth muscle actin
bFGF
connective tissue growth factor
COL1A2
SRF
Thymic stromal lymphopoietin
TGF-beta
tissue inhibitors of metalloproteinases-1
IL18
Janus kinase 2
ERK1/2
KL-6
CCN2
HO-1
endothelin type A receptors
igf1
nuclear factor erythroid 2-related factor 2
MT2
C5aR
CXCL1
MiR-338
Fas ligand
semaphorin-7A
SMAD-3
histone deacetylase
bmp1
COMP
Mkl1
TbRII
VASH-1
IGF-I
Insulin-like growth factor binding protein-3
Collagen Triple Helix Repeat-Containing-1
TGFbeta1
CAV1
PEDF
terminal deoxynucleotidyl transferase
b2 -adrenoceptors
X-linked inhibitor of apoptosis
leucine-rich alpha-2 glycoprotein
PAI1
CD55
miR-29a
Sema 7a
FRbeta
Semaphorin-7A
AT2
caveolin-1
V-ATPase
poly-ADP ribose polymerase
Egr-1
transforming growth factor beta-1
IL6
AP-1
Akt2
Endosialin
phosphoglycerate dehydrogenase
mPGES-1
CXCL12
Atg4b
SNAI1
megakaryoblastic leukemia 1
acyl-CoA oxidase 1
STAT1
P53
pten
Protease-activated receptor-1
cPLA2
Interleukin IL 8
Sgpl1
CD44
Snail
Tb4
hyaluronan synthase 2
MMP-9
T beta RII
Vascular endothelial growth factor
JAK2
CD117
Tumor necrosis factor-alpha
protease-activated receptor PAR-2
miR-9-5p
Wt1
miR-487b
Ost-4
WNT10A
mir-155
HSP90
glucocorticoid receptor
il17a
serine protease
IP-10
IgG1
alpha-SMA
SMA
matrix metalloproteinase-3
c-Jun
TOB2
insulin-like growth factor-1
p63
WNT1-inducible signaling pathway protein 1
TGF-beta1
JunD
CRP1
focal adhesion kinase
AAG
ARPC2
miR-127
monocyte chemoattractant protein 1
FAK
Lin28B
secreted protein acidic and rich in cysteine
cartilage oligomeric matrix protein
galectin-3
EMMPRIN
ErbB2
Sulf2
SIRT6
NF-kB
c-jun
SMAD3
HDAC6
miR-455
periostin
Renin
protein kinase B
PHGDH
PDGF-A and -B
Hepatocyte growth factor
serum response factor
FGF-2
MRTF-A
CBP
Mmp19
TGFb2
Mkl1
HSP47
NOX-4
CD68
Rictor
PEDF
IL-4
Wilms' tumor 1
interleukin-1beta
transforming growth factor b
PPAR
transforming growth factor b1
KL-6
CD46
annexin V
SDC2
IFN-gamma
interleukin IL-1beta
ORP150
BMP-8B
TGFb1
CXCR3
transforming growth factor -b1
matrix metalloproteinase-7
miR-3107
MyD88
tumor necrosis factor-alpha
Transforming growth factor b-1
miR-326
ET-1
Trx
Akt
BI-1
STAT3
STC1
miR-127
PDGFR
MCP-1
PDGF-A and -B
cPLA2
Itgb6
LRP5
Krebs Von Den Lungen-6
transforming growth factor TGF-beta1
USP11
PPAR-a
NADPH oxidase 4
glucagon like peptide-1
insulin-like growth factor I
Osteopontin
PDGF-b
Jun NH2-terminal kinase
Transforming growth factor-beta 1
T-cell lymphoma invasion and metastasis 1
beclin 1
IL-18
fibroblast growth factor-2
p300
miR-382
IL-4
CD8
transforming growth factor-b
Wilms' tumor 1
ERK
Hsp90
Connective tissue growth factor
IGFBP-2
endothelin-1
b-catenin
mPAP
matrix metalloproteinase MMP-9
PIAS4
plasminogen activator inhibitor-1
MicroRNA miR-221
b-FGF
KCa3.1
YAP
SphK
CD248
C5a
gremlin
SFTPC
CCR2
ACLP
il12p40
fibronectin
Col1a2
Gremlin
TGF-b
miR-410
Vasohibin-2
Cub domain containing protein 1
caspase-3
PAR-1
tumor necrosis factor alpha
miR-31
insulin-like growth factor-I
miR-424
FRNK
Keap1
LRG
integrin-linked kinase
SOCS1
transforming growth factor TGF-beta1
TGF-beta 1
miR -221
Smad4
a-SMA
BMP
transforming growth factor-b1
CD46
matrix metalloproteinase-9
tgfb2
RAGE
GR
Itgb6
TGF- b
vascular endothelial growth factor
microRNA miR-155
peroxisome proliferator-activated receptor-y
5-HTR1A/B and 5-HTR2B
sL1
interleukin IL-1b
Transforming growth factor-b1
Transforming growth factor b-1
Mitogen-activated protein kinase-activated protein kinase-2
miR
CXCL12
Galectin-3
TGFB1
miR-3107
Transforming growth factor b
lymphotoxin beta receptor
Smad 7
Stanniocalcin-1
IP10
LTBP] 1, 2, and 4
TG2
IL-17A
SMAD 3
tumor necrosis factor alpha
IL-8
mPAP
transforming growth factor b expression
focal adhesion kinase-related nonkinase
BMP-7
Receptor for advanced glycation end products
Renin
MMP2
Nrf2
miR-154
Transglutaminase 2
miR-21
plasminogen activator inhibitor 1
Cub domain containing protein 1
TGFbeta1
IgG1
EMT
PI3K
glucocorticoid receptor
transforming growth factor beta
Bax
Cysteine-rich protein 1
miR-26a
lysyl oxidase
Janus kinase 2
mothers against decapentaplegic homolog 3
Toll-like receptor 9
VCAM-1
NOS
c-Fos
cyclin D1
IL8, -6, and -1B
150-kDa oxygen-regulated protein
hypoxia-inducible factor-1a
COX-2
Insulin-like growth factor-1
hepatocyte growth factor
MiR-338
TLR4
TSLP
IGF-1
ALK-5
Tumor necrosis factor-alpha
CD11c
C3aR
miR-455
gremlin
Transforming growth factor beta 1
TIAM1
p63
p21
IP10
MRTF-A
CD206
C3a
n-cadherin
X-linked inhibitor of apoptosis
Membrane-type MT-MMPs
RANTES
SOD3
activin
V-ATPase
transforming growth factor -b1
CCN1
CCl4
CDCP1
ICAT
BMPER
VEGF
MMP-2
IL10
TLR9
SMAD-3
CD68
miR-410
beta-galactosidase
suppressor of cytokine signaling 1
AKT2
C1q
serum albumin HSA-thioredoxin 1
IL-1b
LRP5
caspase-3
CCl4
serpine1
vascular endothelial growth factor
protein kinase B
BMP-8B
Bax inhibitor-1
Yin Yang 1
miR-30a
Smad2
CD117
syndecan-2
DDR2
IL-17
Nrf2
COX-2
transforming growth factor-beta
Foxp-3
smooth muscle a-actin
smoothened
Connective tissue growth factor
CCR2
interleukin-8
PHLPP
SphK
transforming growth factor beta1
Elk1
p65
Activin
MAP3K19
AT1
galectin-3
Gremlin
TGF-alpha
PAI1
IFN-gamma
MMP-9
SPARC
IFN-gammaR
CCL2
TNFSF14
CXCR3
BMPR2
extracellular superoxide dismutase
FIEL1
IL6
fibroblast growth factor-2
connective tissue growth factor
Muc5ac
b-catenin
MMP-12
let-7d
ATG4B
TF
Transforming growth factor beta1
hyaluronan synthase 2
Aortic carboxypeptidase-like protein
secreted protein acidic and rich in cysteine
renin
T-cell lymphoma invasion and metastasis 1
CAV1
endothelin type A receptors
miR-5100
FOXF1
beta 1 integrin
Mknk2
a-smooth muscle actin
LPA1
WNT1-inducible signaling pathway protein 1
HAI-2
CD34
COL1A2
ERK
Transforming growth factor TGF-b1
protease-activated receptor-2
PAR-2
Insulin-like growth factor binding protein-3
CXCL9
TGF -b1
PHGDH
IGFBP-1
...
...
dictionaries/genes_7grams.txt
View file @
51cbcfb
signal transducer and activator of transcription 3
secreted protein acidic and rich in cysteine
secreted protein acidic and rich in cysteine
\ No newline at end of file
...
...
dictionaries/genes_8grams.txt
View file @
51cbcfb
platelet-derived growth factor isoforms PDGF A and B
platelet-derived growth factor isoforms PDGF A and B
\ No newline at end of file
...
...
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