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Carlos-Francisco Méndez-Cruz
/
lcg-bioinfoI-bionlp
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Authored by
Carlos-Francisco Méndez-Cruz
2018-09-20 08:35:41 -0500
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5f84dfeef97f664791b5a7c88ab3365dc22abb7a
5f84dfee
1 parent
067a9feb
Training, crossvalidation and testing dataset
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clasificacion-automatica/binding-thrombin-dataset/training-crossvalidation-testing-binding-thrombin.py
clasificacion-automatica/binding-thrombin-dataset/training-crossvalidation-testing-binding-thrombin.py
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5f84dfe
...
...
@@ -219,13 +219,13 @@ if __name__ == "__main__":
paramGrid
=
{
'alpha'
:
scipy
.
stats
.
expon
(
scale
=
1.0
)}
myClassifier
=
model_selection
.
RandomizedSearchCV
(
classifier
,
paramGrid
,
n_iter
=
nIter
,
cv
=
crossV
,
n_jobs
=
jobs
,
verbose
=
3
)
elif
args
.
classifier
==
'kNN'
:
# kNN
k_range
=
list
(
range
(
1
,
7
,
2
))
classifier
=
KNeighborsClassifier
()
paramGrid
=
{
'n_neighbors '
:
k_range
}
myClassifier
=
model_selection
.
RandomizedSearchCV
(
classifier
,
paramGrid
,
n_iter
=
3
,
cv
=
crossV
,
n_jobs
=
jobs
,
verbose
=
3
)
#
elif args.classifier == 'kNN':
#
# kNN
#
k_range = list(range(1, 7, 2))
#
classifier = KNeighborsClassifier()
#
paramGrid = {'n_neighbors ': k_range}
#
myClassifier = model_selection.RandomizedSearchCV(classifier, paramGrid, n_iter=3,
#
cv=crossV, n_jobs=jobs, verbose=3)
else
:
print
(
"Bad classifier"
)
exit
()
...
...
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