Carlos-Francisco Méndez-Cruz / conditional-random-fields

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Carlos-Francisco Méndez-Cruz
15de56cc 1 parent a7e1ac4e

Prepare abstracts

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Showing 1 changed file with 2 additions and 2 deletions
......@@ -20,7 +20,7 @@ __author__ = 'CMendezC'
# Execution:
# python3 prepare-abstracts.py
# --inputPath /export/space1/users/compu2/bionlp/conditional-random-fields/data-sets
# --inputFile text-annotated-abstracts-original.txt
# --inputFile text-annotated-abstracts.txt
# --outputPath /export/space1/users/compu2/bionlp/conditional-random-fields/data-sets/original
# --dicPath /export/space1/users/compu2/bionlp/nlp-preprocessing-pipeline/dictionaries
# --dicFile genes.txt
......@@ -64,7 +64,7 @@ if __name__ == "__main__":
with open(os.path.join(options.inputPath, options.inputFile), "r", encoding="utf-8", errors="replace") as iFile:
print("Reading file..." + options.inputFile)
for line in iFile:
line = line.strip('\n')
line = line.strip('\r\n')
for gene in reGene.findall(line):
# print("genes: {}".format(gene))
if gene not in hashGenes:
......