Carlos-Francisco Méndez-Cruz / bacteria-annotation

Go to a project
Toggle navigation Toggle navigation pinning
Carlos-Francisco Méndez-Cruz
2634c72c 1 parent 40af6f76

Last README

Inline Side-by-side
Showing 1 changed file with 3 additions and 0 deletions
...@@ -10,16 +10,19 @@ $ pip3 install git+https://github.com/OntoGene/OGER.git ...@@ -10,16 +10,19 @@ $ pip3 install git+https://github.com/OntoGene/OGER.git
10 ``` 10 ```
11 ## Run 11 ## Run
12 1. Set CLASSPATH 12 1. Set CLASSPATH
13 +
13 ```shell 14 ```shell
14 $ export CLASSPATH=/path/STANFORD_CORENLP/stanford-corenlp-full-2017-06-09/* 15 $ export CLASSPATH=/path/STANFORD_CORENLP/stanford-corenlp-full-2017-06-09/*
15 ``` 16 ```
16 2. Create new dir in source 17 2. Create new dir in source
18 +
17 ```shell 19 ```shell
18 $ cd source 20 $ cd source
19 $ mkdir newdir 21 $ mkdir newdir
20 ``` 22 ```
21 3. Save your text file with sentences in newdir 23 3. Save your text file with sentences in newdir
22 4. Run python script with Python 3.x 24 4. Run python script with Python 3.x
25 +
23 ```shell 26 ```shell
24 $ cd bind 27 $ cd bind
25 $ python specie_annotation.py --file ../source/newdir/sentences.txt 28 $ python specie_annotation.py --file ../source/newdir/sentences.txt
......