Showing
4 changed files
with
1 additions
and
11 deletions
... | @@ -299,7 +299,7 @@ if __name__ == "__main__": | ... | @@ -299,7 +299,7 @@ if __name__ == "__main__": |
299 | 299 | ||
300 | # Original: labels = list(crf.classes_) | 300 | # Original: labels = list(crf.classes_) |
301 | # Original: labels.remove('O') | 301 | # Original: labels.remove('O') |
302 | - labels = list(['Air', 'Gtype', 'Gversion', 'Med', 'Phase', 'Sample', 'Serie', 'Strain', 'Supp', 'Technique', 'Temp', 'OD', 'Anti', 'Agit', 'Vess']) | 302 | + labels = list(['Air', 'Gtype', 'Gversion', 'Med', 'Phase', 'Supp', 'Technique', 'Temp', 'OD', 'Anti', 'Agit', 'Vess']) |
303 | 303 | ||
304 | # use the same metric for evaluation | 304 | # use the same metric for evaluation |
305 | f1_scorer = make_scorer(metrics.flat_f1_score, | 305 | f1_scorer = make_scorer(metrics.flat_f1_score, | ... | ... |
data-set-analysis/.gitkeep
deleted
100644 → 0
File mode changed
data-set-analysis/meta_labels.tsv
deleted
100644 → 0
1 | -!Sample_characteristics_ch1 !Sample_characteristics_ch2 !Sample_data_processing !Sample_extract_protocol_ch1 !Sample_growth_protocol_ch1 !Sample_growth_protocol_ch2 !Sample_library_strategy !Sample_organism_ch1 !Sample_organism_ch2 !Sample_source_name_ch1 !Sample_source_name_ch2 !Sample_title !Sample_treatment_protocol_ch1 | ||
2 | -Med Substrain Technique Phase Med Med Technique Substrain Orgn Supp Name Name Supp | ||
3 | -Orgn Med Gversion Vess Agit Gversion Strain Gtype Phase | ||
4 | -Strain Gtype Temp Temp Orgn Name OD | ||
5 | -Supp Supp Supp Air Name Air Temp | ||
6 | -Air Air OD Med | ||
7 | -Substrain Air | ||
8 | -Anti Phase | ||
9 | -Phase Gtype | ||
10 | -Gtype Agit |
This diff is collapsed. Click to expand it.
-
Please register or login to post a comment