bioNLP-UNAM / related_regulators

Go to a project
Toggle navigation Toggle navigation pinning
Ignacio Arroyo
eba36be4 1 parent 2c76304a

Added cluster persistence log plots

Inline Side-by-side
Showing 2 changed files with 33 additions and 201 deletions
...@@ -10,7 +10,7 @@ def analyze_pair(group_anlized, gropus_dir, rev, eigenvectors): ...@@ -10,7 +10,7 @@ def analyze_pair(group_anlized, gropus_dir, rev, eigenvectors):
10 with open(eigenvectors) as f: 10 with open(eigenvectors) as f:
11 11
12 eigenvector = [c for c in f.readlines() if c.startswith("(" + 12 eigenvector = [c for c in f.readlines() if c.startswith("(" +
13 - str(group_anlized - 1) + ",")][0] 13 + str(group_anlized) + ",")][0]
14 x = eigenvector.split(" ")[1] 14 x = eigenvector.split(" ")[1]
15 eigen = {"string": x, 15 eigen = {"string": x,
16 "bo": x.split("*")[1].replace('"', ''), 16 "bo": x.split("*")[1].replace('"', ''),
......
1 The analized group = 97 1 The analized group = 97
2 The corresponding TFs: ArgR(0.374), PuuR(-0.39) 2 The corresponding TFs: ArgR(0.374), PuuR(-0.39)
3 3
4 -The corresponding eigenvector: (96, u'0.219*"diacetylchitobiose" + 0.209*"beta-d-cellobiose-6\'-p" + -0.185*"ptsh" + 0.164*"lipid" + -0.148*"phosphorylated_ext" + -0.148*"hpr" + 0.142*"i" + -0.142*"isocitrate-dehydrogenase" + 0.140*"6\'-phosphate" + 0.137*"6-phosphate"') 4 +The corresponding eigenvector: (97, u'-0.273*"putrescine_ext" + -0.265*"glrr" + -0.247*"putrescine" + 0.247*"n2-succinylornithine" + -0.230*"alanine" + 0.216*"n2-succinylarginine" + 0.184*"arginine" + -0.161*"gaba" + 0.125*"2-acetamido-5-oxopentanoate" + -0.115*"tyrosine"')
5 5
6 The analized group = 80 6 The analized group = 80
7 The corresponding TFs: BaeR(0.339), MntR(0.406) 7 The corresponding TFs: BaeR(0.339), MntR(0.406)
8 8
9 -The corresponding eigenvector: (79, u'-0.297*"serine" + -0.270*"dsdc" + -0.204*"mn(ii)" + -0.166*"arsenite" + -0.157*"serine_ext" + -0.153*"mn(ii)_ext" + 0.151*"mdtabcd-baesr" + 0.151*"mdtabcd-baesr_mrna" + -0.117*"dehydroalanine" + -0.114*"uidabc"') 9 +The corresponding eigenvector: (80, u'0.242*"mn(ii)" + 0.220*"mdtabcd-baesr_mrna" + 0.220*"mdtabcd-baesr" + 0.182*"mn(ii)_ext" + -0.175*"tartrate" + -0.155*"fe+2" + 0.133*"dps" + 0.133*"mntp" + 0.129*"mannitol-1-p" + 0.122*"marrab"')
10 10
11 The analized group = 74 11 The analized group = 74
12 The corresponding TFs: BetI(0.395), YqhC(-0.56) 12 The corresponding TFs: BetI(0.395), YqhC(-0.56)
13 13
14 -The corresponding eigenvector: (73, u'0.363*"rcho" + -0.362*"lysa" + 0.287*"alcohol" + 0.215*"betaine" + -0.181*"lysa_mrna" + 0.174*"choline" + -0.158*"rna" + 0.153*"aldehyde" + 0.141*"nemr" + 0.141*"nemra-gloa"') 14 +The corresponding eigenvector: (74, u'-0.442*"rcho" + -0.346*"alcohol" + 0.250*"arsenite" + 0.247*"rna" + -0.235*"hns" + 0.217*"betaine" + 0.203*"rpos" + 0.176*"choline" + 0.155*"aldehyde" + -0.141*"dna"')
15 15
16 The analized group = 68 16 The analized group = 68
17 The corresponding TFs: DinJ-YafQ(-0.49), SdiA(0.692) 17 The corresponding TFs: DinJ-YafQ(-0.49), SdiA(0.692)
18 18
19 -The corresponding eigenvector: (67, u'-0.392*"norr" + -0.362*"norvw" + -0.362*"norvw_mrna" + -0.219*"hyacinthin" + 0.157*"ureidoglycolate" + -0.143*"dinj-yafq" + -0.140*"rna" + -0.131*"norr_mrna" + -0.122*"flrd" + 0.121*"betaine"') 19 +The corresponding eigenvector: (68, u'0.490*"ftsq" + -0.337*"dinj-yafq" + 0.325*"ftsq-ftsb-ftsl" + 0.258*"gadw" + -0.225*"yafq-dinj" + -0.225*"dinj-yafq_mrna" + -0.189*"rna" + 0.151*"ftsz" + 0.151*"ftsa" + 0.148*"gadw_mrna"')
20 20
21 The analized group = 63 21 The analized group = 63
22 The corresponding TFs: DpiA(-0.34), UidR(0.453) 22 The corresponding TFs: DpiA(-0.34), UidR(0.453)
23 23
24 -The corresponding eigenvector: (62, u'0.333*"hyacinthin" + -0.271*"tartrate" + -0.235*"glycerol-3-phosphate" + -0.171*"arsenite" + 0.168*"phenylacetate" + 0.161*"aspartate" + -0.156*"mn(ii)" + -0.133*"2,3-dihydroxycinnamic" + -0.126*"fe+2" + 0.125*"rpos"') 24 +The corresponding eigenvector: (63, u'0.297*"uidabc" + 0.297*"uidabc_mrna" + 0.202*"hyacinthin" + -0.165*"exut" + -0.158*"ftsq" + -0.149*"tartrate" + -0.130*"ureidoglycolate" + -0.129*"rpos" + 0.128*"i-cit" + -0.123*"lyase"')
25 25
26 The analized group = 53 26 The analized group = 53
27 The corresponding TFs: CueR(0.408), CusR(0.522) 27 The corresponding TFs: CueR(0.408), CusR(0.522)
28 28
29 -The corresponding eigenvector: (52, u'-0.216*"ribulose" + 0.214*"beta-neu5ac" + 0.199*"n-acetylneuraminate" + 0.147*"short-chain" + -0.147*"nickel" + 0.139*"alpha-neu5ac" + 0.124*"3-keto-l-gulonate" + -0.123*"fe+2" + 0.122*"alcohol" + -0.120*"lactate"') 29 +The corresponding eigenvector: (53, u'-0.226*"fructose-6-p" + 0.177*"cu(i)" + 0.166*"cu(i)_ext" + 0.150*"carbonate" + 0.143*"silver" + -0.140*"alpha-d-mannose-6-p" + 0.132*"silver_ext" + 0.132*"trans-rxn-90" + 0.132*"cuscfba_mrna" + 0.132*"cuscfba"')
30 30
31 The analized group = 52 31 The analized group = 52
32 The corresponding TFs: EnvY(0.408), NanR(0.398) 32 The corresponding TFs: EnvY(0.408), NanR(0.398)
33 33
34 -The corresponding eigenvector: (51, u'0.376*"ribulose" + 0.204*"dhap" + -0.201*"1,6-diphosphate" + -0.201*"tagatofuranose" + 0.191*"glycoaldehyde" + -0.187*"3-keto-l-gulonate" + 0.182*"lactaldehyde" + -0.173*"rhasr_mrna" + -0.173*"rhasr" + -0.160*"rhar"')
35 -
36 -The analized group = 49
37 -The corresponding TFs: MetR(0.311), RbsR(0.586)
38 -
39 -The corresponding eigenvector: (48, u'0.338*"lactose" + 0.243*"melibiose" + -0.205*"marrab_mrna" + -0.205*"marrab" + 0.193*"lactose_ext" + 0.191*"flda" + 0.183*"lactate" + 0.167*"melibiose_ext" + 0.160*"sgrst-seta" + 0.160*"sgrst-seta_mrna"')
40 -
41 -The analized group = 47
42 -The corresponding TFs: TorR(-0.39), TrpR(-0.57)
43 -
44 -The corresponding eigenvector: (46, u'0.315*"aidb" + 0.230*"sorbitol" + -0.211*"flda" + 0.199*"srlaebd-gutm-srlr-gutq_mrna" + 0.199*"srlaebd-gutm-srlr-gutq" + 0.188*"tryptophan" + 0.144*"carbonate" + 0.140*"marrab_mrna" + 0.140*"marrab" + -0.137*"diacetylchitobiose"')
45 -
46 -The analized group = 44
47 -The corresponding TFs: Ada(0.367), AidB(0.413)
48 -
49 -The corresponding eigenvector: (43, u'-0.437*"ion" + -0.330*"cobalt" + -0.322*"nickel" + -0.250*"nickel_ext" + -0.225*"arsenite" + -0.180*"nikabcder_mrna" + -0.180*"nikabcder" + -0.159*"melibiose" + -0.150*"nikd-nike-nikb-nikc-nika" + -0.139*"ion_ext"')
50 -
51 -The analized group = 43
52 -The corresponding TFs: ArsR(-0.36), NikR(-0.56), RcnR(-0.70)
53 -
54 -The corresponding eigenvector: (42, u'0.373*"flda" + -0.368*"lactate" + -0.187*"with" + -0.175*"peptidoglycan" + -0.173*"glycolate" + 0.171*"sorbitol" + -0.158*"lactate_ext" + -0.157*"nascent" + 0.144*"srlaebd-gutm-srlr-gutq" + 0.144*"srlaebd-gutm-srlr-gutq_mrna"')
55 -
56 -The analized group = 40
57 -The corresponding TFs: FhlA(0.723), HyfR(0.703)
58 -
59 -The corresponding eigenvector: (39, u'-0.267*"puta" + 0.233*"flda" + -0.229*"glutamate-semialdehyde" + -0.229*"5-carboxylate" + -0.229*"pyrroline" + -0.199*"thioredoxin" + -0.198*"proline" + -0.176*"qsebc_mrna" + -0.176*"qsebc" + -0.155*"fumarate"')
60 -
61 -The analized group = 39
62 -The corresponding TFs: BasR(-0.44), PutA(-0.53)
63 -
64 -The corresponding eigenvector: (38, u'0.361*"fructose-6-p" + -0.265*"1,6-diphosphate" + -0.265*"tagatofuranose" + 0.262*"rhasr" + 0.262*"rhasr_mrna" + 0.220*"rhar" + 0.214*"rhamnose" + 0.196*"fumarate" + 0.172*"rhas" + -0.169*"tagaaldol-rxn"')
65 -
66 -The analized group = 38
67 -The corresponding TFs: AlsR(0.390), RhaR(0.500)
68 -
69 -The corresponding eigenvector: (37, u'0.277*"amylose" + 0.211*"fmn" + -0.206*"acid" + 0.195*"flavin" + 0.177*"d-glucose" + 0.174*"1-phosphate" + -0.168*"2,3-dihydroxycinnamic" + -0.165*"carbonate" + 0.162*"maltohexaose" + 0.155*"fumarate"')
70 -
71 -The analized group = 37
72 -The corresponding TFs: MalT(0.398), MhpR(-0.31)
73 -
74 -The corresponding eigenvector: (36, u'0.316*"fmn" + 0.282*"flavin" + -0.274*"amylose" + 0.213*"sulfite" + 0.202*"mononucleotide" + 0.199*"sulfide" + -0.168*"thioredoxin" + -0.158*"d-glucose" + -0.149*"flda" + -0.146*"maltohexaose"')
75 -
76 -The analized group = 36
77 -The corresponding TFs: Cbl(0.548), CysB(0.546)
78 -
79 -The corresponding eigenvector: (35, u'0.338*"7,8-dihydrofolate" + -0.267*"amylose" + -0.223*"rela-mazef_mrna" + -0.223*"rela-mazef" + 0.214*"trna" + -0.183*"hipb-hipa" + 0.162*"methylene-h4pteglu(n)" + -0.148*"hipba" + -0.148*"hipba_mrna" + -0.136*"ppgpp"')
80 -
81 -The analized group = 34
82 -The corresponding TFs: HcaR(-0.35), HypT(0.409), MetJ(0.412)
83 -
84 -The corresponding eigenvector: (33, u'-0.209*"methionine" + 0.207*"ketoglutarate" + 0.172*"rela-mazef" + 0.172*"rela-mazef_mrna" + -0.163*"7,8-dihydrofolate" + 0.154*"biodex" + -0.149*"amylose" + 0.142*"thioredoxin" + 0.141*"hipb-hipa" + 0.136*"lysine"')
85 -
86 -The analized group = 32
87 -The corresponding TFs: AllR(-0.77), CdaR(-0.58)
88 -
89 -The corresponding eigenvector: (31, u'0.262*"hyaabcdef_mrna" + 0.262*"hyaabcdef" + 0.217*"fructuronate" + 0.214*"appcbxa_mrna" + 0.214*"appcbxa" + 0.184*"uidabc_mrna" + 0.184*"uidabc" + 0.171*"flda" + 0.159*"uxur" + -0.155*"methionine"')
90 -
91 -The analized group = 31
92 -The corresponding TFs: AppY(0.558), YdeO(0.502)
93 -
94 -The corresponding eigenvector: (30, u'0.331*"fructuronate" + 0.280*"uidabc_mrna" + 0.280*"uidabc" + 0.241*"uxur" + 0.220*"mannonate" + -0.188*"hyaabcdef_mrna" + -0.188*"hyaabcdef" + 0.182*"uxuab_mrna" + 0.182*"uxuab" + -0.154*"appcbxa"')
95 -
96 -The analized group = 30
97 -The corresponding TFs: ExuR(0.560), UxuR(0.695)
98 -
99 -The corresponding eigenvector: (29, u'0.227*"carbonate" + -0.221*"methionine" + -0.193*"oxygen" + -0.183*"succinate" + -0.174*"fumarate" + 0.151*"aminoacrylate" + 0.151*"glutamine" + -0.148*"hyaabcdef_mrna" + -0.148*"hyaabcdef" + -0.147*"aspartate"')
100 -
101 -The analized group = 29
102 -The corresponding TFs: PepA(0.337), RutR(0.353)
103 -
104 -The corresponding eigenvector: (28, u'0.325*"dhap" + -0.288*"fructose-6-p" + 0.254*"lactaldehyde" + 0.251*"rhasr" + 0.251*"rhasr_mrna" + 0.235*"rhamnose" + 0.196*"rhar" + -0.189*"xylulose-p" + -0.180*"glyceraldehyde-p" + 0.180*"rhas"')
105 -
106 -The analized group = 27
107 -The corresponding TFs: CadC(0.619), GadE-RcsB(0.606)
108 -
109 -The corresponding eigenvector: (26, u'-0.349*"glyceraldehyde-p" + -0.304*"dhap" + -0.247*"1,6-diphosphate" + -0.247*"tagatofuranose" + 0.195*"phosphate" + -0.182*"fructose-6-p" + 0.176*"3-keto-l-gulonate" + 0.170*"ribulose-5-p" + -0.167*"tagaaldol-rxn" + -0.153*"sedoheptulose-7-p"')
110 -
111 -The analized group = 26
112 -The corresponding TFs: AgaR(-0.55), CreB(-0.40)
113 -
114 -The corresponding eigenvector: (25, u'0.402*"poly-beta-1,6-n-acetyl-d-glucosamine" + -0.204*"zinc" + 0.201*"partially" + 0.201*"n-deacetylated" + 0.196*"acetyl-coa" + 0.189*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + -0.175*"zinc_ext" + 0.148*"coenzyme" + -0.141*"fmn" + 0.130*"flda"')
115 -
116 -The analized group = 24
117 -The corresponding TFs: YefM(-0.98), YefM-YoeB(-0.98)
118 -
119 -The corresponding eigenvector: (23, u'-0.717*"zinc" + -0.614*"zinc_ext" + -0.146*"zint" + -0.117*"poly-beta-1,6-n-acetyl-d-glucosamine" + -0.073*"zint_mrna" + -0.066*"acetyl-coa" + -0.058*"n-deacetylated" + -0.058*"partially" + -0.055*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + -0.047*"coenzyme"')
120 -
121 -The analized group = 23
122 -The corresponding TFs: ZntR(-0.94), Zur(-0.94)
123 -
124 -The corresponding eigenvector: (22, u'-0.354*"poly-beta-1,6-n-acetyl-d-glucosamine" + 0.266*"7,8-dihydrofolate" + 0.193*"guanosine-diphosphate" + -0.187*"mazefg_mrna" + -0.187*"mazefg" + -0.177*"n-deacetylated" + -0.177*"partially" + 0.168*"trna" + -0.166*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + -0.157*"glyceraldehyde-p"')
125 -
126 -The analized group = 21
127 -The corresponding TFs: RelB(0.993), RelB-RelE(0.993)
128 -
129 -The corresponding eigenvector: (20, u'0.408*"poly-beta-1,6-n-acetyl-d-glucosamine" + 0.204*"n-deacetylated" + 0.204*"partially" + 0.191*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + 0.187*"7,8-dihydrofolate" + -0.171*"mazefg_mrna" + -0.171*"mazefg" + -0.157*"acetyl-coa" + -0.130*"biodex" + -0.128*"coenzyme"')
130 -
131 -The analized group = 20
132 -The corresponding TFs: NhaR(0.547), OmpR(0.564)
133 -
134 -The corresponding eigenvector: (19, u'-0.616*"tdcabcdefg" + -0.616*"tdcabcdefg_mrna" + -0.132*"tdca" + -0.130*"serine" + -0.112*"serine_ext" + -0.101*"dehydroalanine" + -0.088*"propanoyl-p" + -0.088*"tdce" + -0.088*"threonine_ext" + -0.088*"tdcd"')
135 -
136 -The analized group = 19
137 -The corresponding TFs: TdcA(-0.94), TdcR(-0.94)
138 -
139 -The corresponding eigenvector: (18, u'-0.308*"acetyl-coa" + 0.234*"acpp" + 0.181*"ketoglutarate" + -0.170*"tdcabcdefg_mrna" + -0.170*"tdcabcdefg" + 0.169*"trans" + -0.167*"coenzyme" + -0.129*"hyaabcdef_mrna" + -0.129*"hyaabcdef" + 0.127*"hexadecenoyl-[acp]"')
140 -
141 -The analized group = 18
142 -The corresponding TFs: AtoC(-0.32), PaaX(-0.30)
143 -
144 -The corresponding eigenvector: (17, u'0.372*"flhd-flhc" + 0.372*"flhdc_mrna" + 0.359*"flhdc" + 0.186*"flhc" + 0.186*"flhd" + -0.172*"csgdefg_mrna" + -0.172*"csgdefg" + 0.158*"gltbdf_mrna" + 0.158*"gltbdf" + -0.133*"thioredoxin"')
145 -
146 -The analized group = 15
147 -The corresponding TFs: AlaS(-0.48), IscR(-0.75), OxyR(-0.69)
148 -
149 -The corresponding eigenvector: (14, u'0.375*"gluconate" + -0.343*"xylulose" + -0.286*"ribulose-5-p" + -0.211*"3-keto-l-gulonate" + -0.188*"ribulose" + -0.178*"5p" + -0.170*"xylulose-p" + 0.143*"kdgp" + -0.143*"thioredoxin" + -0.130*"lactaldehyde"')
150 -
151 -The analized group = 13
152 -The corresponding TFs: GalR(0.610), GalS(0.610), HU(0.443)
153 -
154 -The corresponding eigenvector: (12, u'-0.356*"thioredoxin" + 0.267*"udpg" + 0.245*"udp-galactose" + 0.236*"d-glucose" + -0.206*"flda" + 0.200*"1-phosphate" + 0.171*"galactose-1-p" + -0.170*"disulfide" + 0.162*"amylose" + 0.162*"acetyl-coa"')
155 -
156 -The analized group = 12
157 -The corresponding TFs: ArgP(-0.43), DnaA(-0.44), NrdR(-0.34)
158 -
159 -The corresponding eigenvector: (11, u'0.218*"oxygen" + 0.200*"ketoglutarate" + 0.190*"acid" + 0.175*"flda" + 0.158*"thioredoxin" + -0.153*"vitamin" + -0.147*"acpp" + 0.132*"csgdefg_mrna" + 0.132*"csgdefg" + -0.129*"nitrite"')
160 -
161 -The analized group = 9
162 -The corresponding TFs: RcsB-BglJ(-0.52), StpA(-0.53)
163 -
164 -The corresponding eigenvector: (8, u'0.613*"phosphate" + -0.204*"6-phosphate" + 0.176*"acetyl-coa" + 0.171*"beta-d-glucose-6-p" + -0.163*"xylulose" + -0.161*"gluconate" + 0.153*"arbutin-6p" + -0.152*"6-p" + -0.150*"ribulose-5-p" + -0.141*"xylulose-p"')
165 -
166 -iarroyof@bisnaga:~/cooperating_tfs$ python analyze_pair.py
167 -/usr/lib/python2.7/dist-packages/matplotlib/font_manager.py:273: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment.
168 - warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.')
169 -The analized group = 97
170 -The corresponding TFs: ArgR(0.374), PuuR(-0.39)
171 -
172 -The corresponding eigenvector: (96, u'0.219*"diacetylchitobiose" + 0.209*"beta-d-cellobiose-6\'-p" + -0.185*"ptsh" + 0.164*"lipid" + -0.148*"phosphorylated_ext" + -0.148*"hpr" + 0.142*"i" + -0.142*"isocitrate-dehydrogenase" + 0.140*"6\'-phosphate" + 0.137*"6-phosphate"')
173 -
174 -The analized group = 80
175 -The corresponding TFs: BaeR(0.339), MntR(0.406)
176 -
177 -The corresponding eigenvector: (79, u'-0.297*"serine" + -0.270*"dsdc" + -0.204*"mn(ii)" + -0.166*"arsenite" + -0.157*"serine_ext" + -0.153*"mn(ii)_ext" + 0.151*"mdtabcd-baesr" + 0.151*"mdtabcd-baesr_mrna" + -0.117*"dehydroalanine" + -0.114*"uidabc"')
178 -
179 -The analized group = 74
180 -The corresponding TFs: BetI(0.395), YqhC(-0.56)
181 -
182 -The corresponding eigenvector: (73, u'0.363*"rcho" + -0.362*"lysa" + 0.287*"alcohol" + 0.215*"betaine" + -0.181*"lysa_mrna" + 0.174*"choline" + -0.158*"rna" + 0.153*"aldehyde" + 0.141*"nemr" + 0.141*"nemra-gloa"')
183 -
184 -The analized group = 68
185 -The corresponding TFs: DinJ-YafQ(-0.49), SdiA(0.692)
186 -
187 -The corresponding eigenvector: (67, u'-0.392*"norr" + -0.362*"norvw" + -0.362*"norvw_mrna" + -0.219*"hyacinthin" + 0.157*"ureidoglycolate" + -0.143*"dinj-yafq" + -0.140*"rna" + -0.131*"norr_mrna" + -0.122*"flrd" + 0.121*"betaine"')
188 -
189 -The analized group = 63
190 -The corresponding TFs: DpiA(-0.34), UidR(0.453)
191 -
192 -The corresponding eigenvector: (62, u'0.333*"hyacinthin" + -0.271*"tartrate" + -0.235*"glycerol-3-phosphate" + -0.171*"arsenite" + 0.168*"phenylacetate" + 0.161*"aspartate" + -0.156*"mn(ii)" + -0.133*"2,3-dihydroxycinnamic" + -0.126*"fe+2" + 0.125*"rpos"')
193 -
194 -The analized group = 53
195 -The corresponding TFs: CueR(0.408), CusR(0.522)
196 -
197 The corresponding eigenvector: (52, u'-0.216*"ribulose" + 0.214*"beta-neu5ac" + 0.199*"n-acetylneuraminate" + 0.147*"short-chain" + -0.147*"nickel" + 0.139*"alpha-neu5ac" + 0.124*"3-keto-l-gulonate" + -0.123*"fe+2" + 0.122*"alcohol" + -0.120*"lactate"') 34 The corresponding eigenvector: (52, u'-0.216*"ribulose" + 0.214*"beta-neu5ac" + 0.199*"n-acetylneuraminate" + 0.147*"short-chain" + -0.147*"nickel" + 0.139*"alpha-neu5ac" + 0.124*"3-keto-l-gulonate" + -0.123*"fe+2" + 0.122*"alcohol" + -0.120*"lactate"')
198 35
199 -The analized group = 52
200 -The corresponding TFs: EnvY(0.408), NanR(0.398)
201 -
202 -The corresponding eigenvector: (51, u'0.376*"ribulose" + 0.204*"dhap" + -0.201*"1,6-diphosphate" + -0.201*"tagatofuranose" + 0.191*"glycoaldehyde" + -0.187*"3-keto-l-gulonate" + 0.182*"lactaldehyde" + -0.173*"rhasr_mrna" + -0.173*"rhasr" + -0.160*"rhar"')
203 -
204 The analized group = 49 36 The analized group = 49
205 The corresponding TFs: MetR(0.311), RbsR(0.586) 37 The corresponding TFs: MetR(0.311), RbsR(0.586)
206 38
207 -The corresponding eigenvector: (48, u'0.338*"lactose" + 0.243*"melibiose" + -0.205*"marrab_mrna" + -0.205*"marrab" + 0.193*"lactose_ext" + 0.191*"flda" + 0.183*"lactate" + 0.167*"melibiose_ext" + 0.160*"sgrst-seta" + 0.160*"sgrst-seta_mrna"') 39 +The corresponding eigenvector: (49, u'0.308*"aicar" + 0.282*"5\'-p-ribosylglycinamide" + 0.249*"faicar" + 0.181*"thf" + 0.181*"polyglutamate" + 0.174*"5-phosphoribosylamine" + 0.167*"glycine" + 0.131*"aidb" + 0.112*"lactate" + -0.111*"lactose"')
208 40
209 The analized group = 47 41 The analized group = 47
210 The corresponding TFs: TorR(-0.39), TrpR(-0.57) 42 The corresponding TFs: TorR(-0.39), TrpR(-0.57)
211 43
212 -The corresponding eigenvector: (46, u'0.315*"aidb" + 0.230*"sorbitol" + -0.211*"flda" + 0.199*"srlaebd-gutm-srlr-gutq_mrna" + 0.199*"srlaebd-gutm-srlr-gutq" + 0.188*"tryptophan" + 0.144*"carbonate" + 0.140*"marrab_mrna" + 0.140*"marrab" + -0.137*"diacetylchitobiose"') 44 +The corresponding eigenvector: (47, u'-0.343*"tryptophan" + -0.218*"indole" + -0.205*"flda" + -0.205*"serine" + 0.192*"fructose-6-p" + -0.166*"vitamin" + -0.142*"chorismate" + -0.131*"shikimate" + -0.131*"shikimate-5-p" + -0.122*"tryptophan_ext"')
213 45
214 The analized group = 44 46 The analized group = 44
215 The corresponding TFs: Ada(0.367), AidB(0.413) 47 The corresponding TFs: Ada(0.367), AidB(0.413)
216 48
217 -The corresponding eigenvector: (43, u'-0.437*"ion" + -0.330*"cobalt" + -0.322*"nickel" + -0.250*"nickel_ext" + -0.225*"arsenite" + -0.180*"nikabcder_mrna" + -0.180*"nikabcder" + -0.159*"melibiose" + -0.150*"nikd-nike-nikb-nikc-nika" + -0.139*"ion_ext"') 49 +The corresponding eigenvector: (44, u'0.387*"aidb" + 0.299*"carbonate" + -0.189*"marrab_mrna" + -0.189*"marrab" + 0.166*"co2" + -0.149*"hyfabcdefghijr-focb_mrna" + -0.149*"hyfabcdefghijr-focb" + 0.145*"aidb_mrna" + 0.124*"dna" + -0.115*"hydrogenase"')
218 50
219 The analized group = 43 51 The analized group = 43
220 The corresponding TFs: ArsR(-0.36), NikR(-0.56), RcnR(-0.70) 52 The corresponding TFs: ArsR(-0.36), NikR(-0.56), RcnR(-0.70)
221 53
222 -The corresponding eigenvector: (42, u'0.373*"flda" + -0.368*"lactate" + -0.187*"with" + -0.175*"peptidoglycan" + -0.173*"glycolate" + 0.171*"sorbitol" + -0.158*"lactate_ext" + -0.157*"nascent" + 0.144*"srlaebd-gutm-srlr-gutq" + 0.144*"srlaebd-gutm-srlr-gutq_mrna"') 54 +The corresponding eigenvector: (43, u'-0.437*"ion" + -0.330*"cobalt" + -0.322*"nickel" + -0.250*"nickel_ext" + -0.225*"arsenite" + -0.180*"nikabcder_mrna" + -0.180*"nikabcder" + -0.159*"melibiose" + -0.150*"nikd-nike-nikb-nikc-nika" + -0.139*"ion_ext"')
223 55
224 The analized group = 40 56 The analized group = 40
225 The corresponding TFs: FhlA(0.723), HyfR(0.703) 57 The corresponding TFs: FhlA(0.723), HyfR(0.703)
226 58
227 -The corresponding eigenvector: (39, u'-0.267*"puta" + 0.233*"flda" + -0.229*"glutamate-semialdehyde" + -0.229*"5-carboxylate" + -0.229*"pyrroline" + -0.199*"thioredoxin" + -0.198*"proline" + -0.176*"qsebc_mrna" + -0.176*"qsebc" + -0.155*"fumarate"') 59 +The corresponding eigenvector: (40, u'0.336*"hyfabcdefghijr-focb_mrna" + 0.336*"hyfabcdefghijr-focb" + 0.322*"hydrogenase" + 0.261*"hydrogen" + 0.260*"electron" + 0.252*"hyfg-hyfi-hyfa-hyfb-hyfc-hyfd-hyfe-hyff-hyfh" + 0.252*"mvhmeth-rxn" + 0.181*"3" + 0.136*"aidb" + -0.134*"vitamin"')
228 60
229 The analized group = 39 61 The analized group = 39
230 The corresponding TFs: BasR(-0.44), PutA(-0.53) 62 The corresponding TFs: BasR(-0.44), PutA(-0.53)
231 63
232 -The corresponding eigenvector: (38, u'0.361*"fructose-6-p" + -0.265*"1,6-diphosphate" + -0.265*"tagatofuranose" + 0.262*"rhasr" + 0.262*"rhasr_mrna" + 0.220*"rhar" + 0.214*"rhamnose" + 0.196*"fumarate" + 0.172*"rhas" + -0.169*"tagaaldol-rxn"') 64 +The corresponding eigenvector: (39, u'-0.267*"puta" + 0.233*"flda" + -0.229*"glutamate-semialdehyde" + -0.229*"5-carboxylate" + -0.229*"pyrroline" + -0.199*"thioredoxin" + -0.198*"proline" + -0.176*"qsebc_mrna" + -0.176*"qsebc" + -0.155*"fumarate"')
233 65
234 The analized group = 38 66 The analized group = 38
235 The corresponding TFs: AlsR(0.390), RhaR(0.500) 67 The corresponding TFs: AlsR(0.390), RhaR(0.500)
236 68
237 -The corresponding eigenvector: (37, u'0.277*"amylose" + 0.211*"fmn" + -0.206*"acid" + 0.195*"flavin" + 0.177*"d-glucose" + 0.174*"1-phosphate" + -0.168*"2,3-dihydroxycinnamic" + -0.165*"carbonate" + 0.162*"maltohexaose" + 0.155*"fumarate"') 69 +The corresponding eigenvector: (38, u'0.361*"fructose-6-p" + -0.265*"1,6-diphosphate" + -0.265*"tagatofuranose" + 0.262*"rhasr" + 0.262*"rhasr_mrna" + 0.220*"rhar" + 0.214*"rhamnose" + 0.196*"fumarate" + 0.172*"rhas" + -0.169*"tagaaldol-rxn"')
238 70
239 The analized group = 37 71 The analized group = 37
240 The corresponding TFs: MalT(0.398), MhpR(-0.31) 72 The corresponding TFs: MalT(0.398), MhpR(-0.31)
241 73
242 -The corresponding eigenvector: (36, u'0.316*"fmn" + 0.282*"flavin" + -0.274*"amylose" + 0.213*"sulfite" + 0.202*"mononucleotide" + 0.199*"sulfide" + -0.168*"thioredoxin" + -0.158*"d-glucose" + -0.149*"flda" + -0.146*"maltohexaose"') 74 +The corresponding eigenvector: (37, u'0.277*"amylose" + 0.211*"fmn" + -0.206*"acid" + 0.195*"flavin" + 0.177*"d-glucose" + 0.174*"1-phosphate" + -0.168*"2,3-dihydroxycinnamic" + -0.165*"carbonate" + 0.162*"maltohexaose" + 0.155*"fumarate"')
243 75
244 The analized group = 36 76 The analized group = 36
245 The corresponding TFs: Cbl(0.548), CysB(0.546) 77 The corresponding TFs: Cbl(0.548), CysB(0.546)
246 78
247 -The corresponding eigenvector: (35, u'0.338*"7,8-dihydrofolate" + -0.267*"amylose" + -0.223*"rela-mazef_mrna" + -0.223*"rela-mazef" + 0.214*"trna" + -0.183*"hipb-hipa" + 0.162*"methylene-h4pteglu(n)" + -0.148*"hipba" + -0.148*"hipba_mrna" + -0.136*"ppgpp"') 79 +The corresponding eigenvector: (36, u'0.316*"fmn" + 0.282*"flavin" + -0.274*"amylose" + 0.213*"sulfite" + 0.202*"mononucleotide" + 0.199*"sulfide" + -0.168*"thioredoxin" + -0.158*"d-glucose" + -0.149*"flda" + -0.146*"maltohexaose"')
248 80
249 The analized group = 34 81 The analized group = 34
250 The corresponding TFs: HcaR(-0.35), HypT(0.409), MetJ(0.412) 82 The corresponding TFs: HcaR(-0.35), HypT(0.409), MetJ(0.412)
251 83
252 -The corresponding eigenvector: (33, u'-0.209*"methionine" + 0.207*"ketoglutarate" + 0.172*"rela-mazef" + 0.172*"rela-mazef_mrna" + -0.163*"7,8-dihydrofolate" + 0.154*"biodex" + -0.149*"amylose" + 0.142*"thioredoxin" + 0.141*"hipb-hipa" + 0.136*"lysine"') 84 +The corresponding eigenvector: (34, u'-0.249*"oxygen" + 0.237*"methionine" + 0.221*"ketoglutarate" + -0.166*"2,3-dihydroxycinnamic" + 0.159*"acetyl-coa" + 0.155*"biodex" + -0.146*"2,3-dhp" + -0.139*"fmn" + -0.138*"gaba" + 0.136*"lysine"')
253 85
254 The analized group = 32 86 The analized group = 32
255 The corresponding TFs: AllR(-0.77), CdaR(-0.58) 87 The corresponding TFs: AllR(-0.77), CdaR(-0.58)
256 88
257 -The corresponding eigenvector: (31, u'0.262*"hyaabcdef_mrna" + 0.262*"hyaabcdef" + 0.217*"fructuronate" + 0.214*"appcbxa_mrna" + 0.214*"appcbxa" + 0.184*"uidabc_mrna" + 0.184*"uidabc" + 0.171*"flda" + 0.159*"uxur" + -0.155*"methionine"') 89 +The corresponding eigenvector: (32, u'-0.436*"glycerate" + -0.435*"tartronate-s-ald" + -0.284*"ureidoglycolate" + -0.249*"glyoxylate" + -0.224*"allantoate" + -0.186*"5-kdg" + -0.164*"allantoin" + -0.164*"alls" + -0.127*"methionine" + -0.116*"2-p-d-glycerate"')
258 90
259 The analized group = 31 91 The analized group = 31
260 The corresponding TFs: AppY(0.558), YdeO(0.502) 92 The corresponding TFs: AppY(0.558), YdeO(0.502)
261 93
262 -The corresponding eigenvector: (30, u'0.331*"fructuronate" + 0.280*"uidabc_mrna" + 0.280*"uidabc" + 0.241*"uxur" + 0.220*"mannonate" + -0.188*"hyaabcdef_mrna" + -0.188*"hyaabcdef" + 0.182*"uxuab_mrna" + 0.182*"uxuab" + -0.154*"appcbxa"') 94 +The corresponding eigenvector: (31, u'0.262*"hyaabcdef_mrna" + 0.262*"hyaabcdef" + 0.217*"fructuronate" + 0.214*"appcbxa_mrna" + 0.214*"appcbxa" + 0.184*"uidabc_mrna" + 0.184*"uidabc" + 0.171*"flda" + 0.159*"uxur" + -0.155*"methionine"')
263 95
264 The analized group = 30 96 The analized group = 30
265 The corresponding TFs: ExuR(0.560), UxuR(0.695) 97 The corresponding TFs: ExuR(0.560), UxuR(0.695)
266 98
267 -The corresponding eigenvector: (29, u'0.227*"carbonate" + -0.221*"methionine" + -0.193*"oxygen" + -0.183*"succinate" + -0.174*"fumarate" + 0.151*"aminoacrylate" + 0.151*"glutamine" + -0.148*"hyaabcdef_mrna" + -0.148*"hyaabcdef" + -0.147*"aspartate"') 99 +The corresponding eigenvector: (30, u'0.331*"fructuronate" + 0.280*"uidabc_mrna" + 0.280*"uidabc" + 0.241*"uxur" + 0.220*"mannonate" + -0.188*"hyaabcdef_mrna" + -0.188*"hyaabcdef" + 0.182*"uxuab_mrna" + 0.182*"uxuab" + -0.154*"appcbxa"')
268 100
269 The analized group = 29 101 The analized group = 29
270 The corresponding TFs: PepA(0.337), RutR(0.353) 102 The corresponding TFs: PepA(0.337), RutR(0.353)
271 103
272 -The corresponding eigenvector: (28, u'0.325*"dhap" + -0.288*"fructose-6-p" + 0.254*"lactaldehyde" + 0.251*"rhasr" + 0.251*"rhasr_mrna" + 0.235*"rhamnose" + 0.196*"rhar" + -0.189*"xylulose-p" + -0.180*"glyceraldehyde-p" + 0.180*"rhas"') 104 +The corresponding eigenvector: (29, u'0.227*"carbonate" + -0.221*"methionine" + -0.193*"oxygen" + -0.183*"succinate" + -0.174*"fumarate" + 0.151*"aminoacrylate" + 0.151*"glutamine" + -0.148*"hyaabcdef_mrna" + -0.148*"hyaabcdef" + -0.147*"aspartate"')
273 105
274 The analized group = 27 106 The analized group = 27
275 The corresponding TFs: CadC(0.619), GadE-RcsB(0.606) 107 The corresponding TFs: CadC(0.619), GadE-RcsB(0.606)
276 108
277 -The corresponding eigenvector: (26, u'-0.349*"glyceraldehyde-p" + -0.304*"dhap" + -0.247*"1,6-diphosphate" + -0.247*"tagatofuranose" + 0.195*"phosphate" + -0.182*"fructose-6-p" + 0.176*"3-keto-l-gulonate" + 0.170*"ribulose-5-p" + -0.167*"tagaaldol-rxn" + -0.153*"sedoheptulose-7-p"') 109 +The corresponding eigenvector: (27, u'0.385*"biodex" + 0.287*"lysine" + -0.255*"ketoglutarate" + 0.190*"1-_ext" + 0.179*"cadba_mrna" + 0.179*"cadba" + -0.170*"thioredoxin" + 0.160*"acid" + 0.149*"lysine_ext" + 0.142*"cadc"')
278 110
279 The analized group = 26 111 The analized group = 26
280 The corresponding TFs: AgaR(-0.55), CreB(-0.40) 112 The corresponding TFs: AgaR(-0.55), CreB(-0.40)
281 113
282 -The corresponding eigenvector: (25, u'0.402*"poly-beta-1,6-n-acetyl-d-glucosamine" + -0.204*"zinc" + 0.201*"partially" + 0.201*"n-deacetylated" + 0.196*"acetyl-coa" + 0.189*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + -0.175*"zinc_ext" + 0.148*"coenzyme" + -0.141*"fmn" + 0.130*"flda"') 114 +The corresponding eigenvector: (26, u'-0.349*"glyceraldehyde-p" + -0.304*"dhap" + -0.247*"1,6-diphosphate" + -0.247*"tagatofuranose" + 0.195*"phosphate" + -0.182*"fructose-6-p" + 0.176*"3-keto-l-gulonate" + 0.170*"ribulose-5-p" + -0.167*"tagaaldol-rxn" + -0.153*"sedoheptulose-7-p"')
283 115
284 The analized group = 24 116 The analized group = 24
285 The corresponding TFs: YefM(-0.98), YefM-YoeB(-0.98) 117 The corresponding TFs: YefM(-0.98), YefM-YoeB(-0.98)
286 118
287 -The corresponding eigenvector: (23, u'-0.717*"zinc" + -0.614*"zinc_ext" + -0.146*"zint" + -0.117*"poly-beta-1,6-n-acetyl-d-glucosamine" + -0.073*"zint_mrna" + -0.066*"acetyl-coa" + -0.058*"n-deacetylated" + -0.058*"partially" + -0.055*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + -0.047*"coenzyme"') 119 +The corresponding eigenvector: (24, u'-0.595*"yefm-yoeb" + -0.478*"yefm-yoeb_mrna" + -0.478*"yoeb-yefm" + -0.362*"yefm" + -0.239*"yoeb" + 0.000*"zinc" + 0.000*"zinc_ext" + 0.000*"zint" + 0.000*"poly-beta-1,6-n-acetyl-d-glucosamine" + 0.000*"acetyl-coa"')
288 120
289 The analized group = 23 121 The analized group = 23
290 The corresponding TFs: ZntR(-0.94), Zur(-0.94) 122 The corresponding TFs: ZntR(-0.94), Zur(-0.94)
291 123
292 -The corresponding eigenvector: (22, u'-0.354*"poly-beta-1,6-n-acetyl-d-glucosamine" + 0.266*"7,8-dihydrofolate" + 0.193*"guanosine-diphosphate" + -0.187*"mazefg_mrna" + -0.187*"mazefg" + -0.177*"n-deacetylated" + -0.177*"partially" + 0.168*"trna" + -0.166*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + -0.157*"glyceraldehyde-p"') 124 +The corresponding eigenvector: (23, u'-0.717*"zinc" + -0.614*"zinc_ext" + -0.146*"zint" + -0.117*"poly-beta-1,6-n-acetyl-d-glucosamine" + -0.073*"zint_mrna" + -0.066*"acetyl-coa" + -0.058*"n-deacetylated" + -0.058*"partially" + -0.055*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + -0.047*"coenzyme"')
293 125
294 The analized group = 21 126 The analized group = 21
295 The corresponding TFs: RelB(0.993), RelB-RelE(0.993) 127 The corresponding TFs: RelB(0.993), RelB-RelE(0.993)
296 128
297 -The corresponding eigenvector: (20, u'0.408*"poly-beta-1,6-n-acetyl-d-glucosamine" + 0.204*"n-deacetylated" + 0.204*"partially" + 0.191*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + 0.187*"7,8-dihydrofolate" + -0.171*"mazefg_mrna" + -0.171*"mazefg" + -0.157*"acetyl-coa" + -0.130*"biodex" + -0.128*"coenzyme"') 129 +The corresponding eigenvector: (21, u'0.527*"relbe-hokd_mrna" + 0.527*"relb-rele" + 0.527*"relbe-hokd" + 0.260*"relb" + 0.260*"rele" + 0.176*"hokd" + 0.000*"7,8-dihydrofolate" + 0.000*"yefm-yoeb" + -0.000*"poly-beta-1,6-n-acetyl-d-glucosamine" + 0.000*"yoeb-yefm"')
298 130
299 The analized group = 20 131 The analized group = 20
300 The corresponding TFs: NhaR(0.547), OmpR(0.564) 132 The corresponding TFs: NhaR(0.547), OmpR(0.564)
301 133
302 -The corresponding eigenvector: (19, u'-0.616*"tdcabcdefg" + -0.616*"tdcabcdefg_mrna" + -0.132*"tdca" + -0.130*"serine" + -0.112*"serine_ext" + -0.101*"dehydroalanine" + -0.088*"propanoyl-p" + -0.088*"tdce" + -0.088*"threonine_ext" + -0.088*"tdcd"') 134 +The corresponding eigenvector: (20, u'0.408*"poly-beta-1,6-n-acetyl-d-glucosamine" + 0.204*"n-deacetylated" + 0.204*"partially" + 0.191*"poly-beta-1,6-n-acetyl-d-glucosamine_ext" + 0.187*"7,8-dihydrofolate" + -0.171*"mazefg_mrna" + -0.171*"mazefg" + -0.157*"acetyl-coa" + -0.130*"biodex" + -0.128*"coenzyme"')
303 135
304 The analized group = 19 136 The analized group = 19
305 The corresponding TFs: TdcA(-0.94), TdcR(-0.94) 137 The corresponding TFs: TdcA(-0.94), TdcR(-0.94)
306 138
307 -The corresponding eigenvector: (18, u'-0.308*"acetyl-coa" + 0.234*"acpp" + 0.181*"ketoglutarate" + -0.170*"tdcabcdefg_mrna" + -0.170*"tdcabcdefg" + 0.169*"trans" + -0.167*"coenzyme" + -0.129*"hyaabcdef_mrna" + -0.129*"hyaabcdef" + 0.127*"hexadecenoyl-[acp]"') 139 +The corresponding eigenvector: (19, u'-0.616*"tdcabcdefg" + -0.616*"tdcabcdefg_mrna" + -0.132*"tdca" + -0.130*"serine" + -0.112*"serine_ext" + -0.101*"dehydroalanine" + -0.088*"propanoyl-p" + -0.088*"tdce" + -0.088*"threonine_ext" + -0.088*"tdcd"')
308 140
309 The analized group = 18 141 The analized group = 18
310 The corresponding TFs: AtoC(-0.32), PaaX(-0.30) 142 The corresponding TFs: AtoC(-0.32), PaaX(-0.30)
311 143
312 -The corresponding eigenvector: (17, u'0.372*"flhd-flhc" + 0.372*"flhdc_mrna" + 0.359*"flhdc" + 0.186*"flhc" + 0.186*"flhd" + -0.172*"csgdefg_mrna" + -0.172*"csgdefg" + 0.158*"gltbdf_mrna" + 0.158*"gltbdf" + -0.133*"thioredoxin"') 144 +The corresponding eigenvector: (18, u'-0.308*"acetyl-coa" + 0.234*"acpp" + 0.181*"ketoglutarate" + -0.170*"tdcabcdefg_mrna" + -0.170*"tdcabcdefg" + 0.169*"trans" + -0.167*"coenzyme" + -0.129*"hyaabcdef_mrna" + -0.129*"hyaabcdef" + 0.127*"hexadecenoyl-[acp]"')
313 145
314 The analized group = 15 146 The analized group = 15
315 The corresponding TFs: AlaS(-0.48), IscR(-0.75), OxyR(-0.69) 147 The corresponding TFs: AlaS(-0.48), IscR(-0.75), OxyR(-0.69)
316 148
317 -The corresponding eigenvector: (14, u'0.375*"gluconate" + -0.343*"xylulose" + -0.286*"ribulose-5-p" + -0.211*"3-keto-l-gulonate" + -0.188*"ribulose" + -0.178*"5p" + -0.170*"xylulose-p" + 0.143*"kdgp" + -0.143*"thioredoxin" + -0.130*"lactaldehyde"') 149 +The corresponding eigenvector: (15, u'-0.482*"alanine" + -0.215*"desulfurase]" + -0.210*"persulfide" + -0.210*"[l-cysteine" + -0.210*"l-cysteine" + -0.199*"cysteines" + -0.167*"protein" + -0.159*"unsulfurated" + -0.159*"donor]" + -0.159*"[sulfur"')
318 150
319 The analized group = 13 151 The analized group = 13
320 The corresponding TFs: GalR(0.610), GalS(0.610), HU(0.443) 152 The corresponding TFs: GalR(0.610), GalS(0.610), HU(0.443)
321 153
322 -The corresponding eigenvector: (12, u'-0.356*"thioredoxin" + 0.267*"udpg" + 0.245*"udp-galactose" + 0.236*"d-glucose" + -0.206*"flda" + 0.200*"1-phosphate" + 0.171*"galactose-1-p" + -0.170*"disulfide" + 0.162*"amylose" + 0.162*"acetyl-coa"') 154 +The corresponding eigenvector: (13, u'0.293*"udpg" + 0.269*"udp-galactose" + 0.244*"thioredoxin" + 0.241*"d-glucose" + 0.202*"1-phosphate" + -0.199*"oxygen" + 0.188*"galactose-1-p" + -0.179*"acetyl-coa" + 0.143*"alanine" + -0.141*"ketoglutarate"')
323 155
324 The analized group = 12 156 The analized group = 12
325 The corresponding TFs: ArgP(-0.43), DnaA(-0.44), NrdR(-0.34) 157 The corresponding TFs: ArgP(-0.43), DnaA(-0.44), NrdR(-0.34)
326 158
327 -The corresponding eigenvector: (11, u'0.218*"oxygen" + 0.200*"ketoglutarate" + 0.190*"acid" + 0.175*"flda" + 0.158*"thioredoxin" + -0.153*"vitamin" + -0.147*"acpp" + 0.132*"csgdefg_mrna" + 0.132*"csgdefg" + -0.129*"nitrite"') 159 +The corresponding eigenvector: (12, u'-0.356*"thioredoxin" + 0.267*"udpg" + 0.245*"udp-galactose" + 0.236*"d-glucose" + -0.206*"flda" + 0.200*"1-phosphate" + 0.171*"galactose-1-p" + -0.170*"disulfide" + 0.162*"amylose" + 0.162*"acetyl-coa"')
328 160
329 The analized group = 9 161 The analized group = 9
330 The corresponding TFs: RcsB-BglJ(-0.52), StpA(-0.53) 162 The corresponding TFs: RcsB-BglJ(-0.52), StpA(-0.53)
331 163
332 -The corresponding eigenvector: (8, u'0.613*"phosphate" + -0.204*"6-phosphate" + 0.176*"acetyl-coa" + 0.171*"beta-d-glucose-6-p" + -0.163*"xylulose" + -0.161*"gluconate" + 0.153*"arbutin-6p" + -0.152*"6-p" + -0.150*"ribulose-5-p" + -0.141*"xylulose-p"') 164 +The corresponding eigenvector: (9, u'-0.313*"gluconate" + 0.298*"6-phosphate" + -0.265*"arbutin-6p" + -0.235*"salicin-6-p" + -0.207*"beta-d-glucose-6-p" + -0.202*"6-p" + -0.161*"xylulose-p" + -0.159*"bglg" + -0.159*"bglgfb" + -0.159*"bglgfb_mrna"')
......