Added cluster persistence plots

-,iarroyof,bisnaga,19.02.2018 13:28,file:///home/iarroyof/.config/libreoffice/4;
\ No newline at end of file
+,iarroyof,bisnaga,20.02.2018 21:25,file:///home/iarroyof/.config/libreoffice/4;
\ No newline at end of file

+
+from pdb import set_trace as st
+import os
+import matplotlib.pyplot as plt
+
+
+def analyze_pair(group_anlized, gropus_dir, rev, eigenvectors):
+    dic_part = {}
+    with open(eigenvectors) as f:
+
+        eigenvector = [c for c in f.readlines() if c.startswith("(" +
+                                            str(group_anlized - 1) + ",")][0]
+    x = eigenvector.split(" ")[1]
+    eigen = {"string": x,
+            "bo": x.split("*")[1].replace('"', ''),
+            "value": float(x.split("*")[0].replace("u'", '').strip())
+            }
+
+    filelist = os.listdir(gropus_dir)
+
+    init_gfile = "gus_originales_" + str(rev).zfill(3) + ".cls"
+
+    with open(gropus_dir + init_gfile, 'r') as f:
+        groups = f.readlines()
+        del groups[-1]
+        tfs = [c for c in groups if c.startswith(str(group_anlized))][0]
+
+        print("The analized group = %s" % tfs.split('\t')[0])
+        print("The corresponding TFs: %s" % tfs.split('\t')[1])
+        print("The corresponding eigenvector: %s" % eigenvector)
+        group = {}
+        ss = tfs.split(",")
+
+        TFs = {[s for s in tf.strip().partition("(")[0].partition("\t")
+            if s.replace('-', '').isalpha()][0]: [float(
+                tf.partition("(")[-1].strip().strip(")"))] for tf in ss}
+
+    partition = []
+    for i in reversed(range(2, rev)):
+    #if i.endswith(".cls"):  # You could also add "and i.startswith('f')
+        name = "gus_originales_" + str(i).zfill(3) + ".cls"
+        with open(gropus_dir + name, 'r') as f:
+            gropus = f.readlines()
+            del gropus[-1]
+
+            for c in gropus:
+                ss = c.split(",")
+                TFss = {[s for s in tf.strip().partition("(")[0].partition("\t")
+                     if s.replace('-', '').isalpha()][0]: [float(
+                             tf.partition("(")[-1].strip().strip(")"))]
+                                                                for tf in ss}
+
+                if set((t for t in list(TFs.keys()))) <= set(TFss):  # verify if TFs
+                    not_in = set(TFs.keys()) ^ set(list(TFss.keys()))  # are in the
+                    for k in list(TFs.keys()):                    # current cluster
+                        TFs[k] += TFss[k]
+
+                    if not_in:
+                        for n in not_in:
+                            TFs[n] = TFss[n]
+
+        partition.append((i, list(TFs.keys()), len(list(TFs.keys()))))
+
+    partition = zip(*partition)
+    dic_part["part"] = partition[0]
+    dic_part["tfs"] = partition[1]
+    dic_part["n_tfs"] = partition[2]
+
+    return dic_part
+
+
+def get_cmap(n, name='hsv'):
+    '''Returns a function that maps each index in 0, 1, ..., n-1 to a distinct
+    RGB color; the keyword argument name must be a standard mpl colormap name.'''
+    return plt.cm.get_cmap(name, n)
+
+rev = 120
+
+eigenvectors = "one-by-one/eigen_vectors/eigenBOs_120-eigens.txt"
+gropus_dir = "one-by-one/groups/"
+
+# Candidatos que inician con 2 o 3 TFs desde la particion de 120 grupos
+groups_analyzed = [97, 80, 74, 68, 63, 53, 52, 49, 47, 44, 43, 40, 39, 38, 37,
+                    36, 34, 32, 31, 30, 29, 27, 26, 24, 23, 21, 20, 19, 18, 15,
+                    13, 12, 9]
+cmap = get_cmap(len(groups_analyzed))
+
+plots = []
+
+for g in groups_analyzed:
+    partition = analyze_pair(group_anlized=g, gropus_dir=gropus_dir,
+                                        rev=rev, eigenvectors=eigenvectors)
+    plots.append(partition)
+
+fig = plt.figure()
+ax1 = fig.add_subplot(111)
+
+for i, p in enumerate(plots):
+    if " ".join(p['tfs'][0]) == "Zur ZntR":
+        width = 4
+        mark = "D"
+    else:
+        width = 2
+        mark = ""
+    ax1.plot(p['part'], p['n_tfs'], c=cmap(i), linewidth=width, marker=mark,
+                                                label=" ".join(p['tfs'][0]))
+
+#ax1.scatter(x[40:],y[40:], s=10, c='r', marker="o", label='second')
+plt.legend(loc='upper right')
+plt.title("TF pair persistence through partitions of model resolution")
+plt.xlabel("Partition")
+plt.ylabel("Number of TFs")
+plt.show()
+
+#print(TFs.keys())
+#print(TFss.keys())
+#partition = zip(*partition)
+#print(partition)

+-------------------------------------------------
+protein]	hpr	phosphorylated_ext	h	[glycine-cleavage	6-phosphate	l-glutamate	complex	ketoglutarate	co2
+phosphorylated_ext	hpr	6-phosphate	ptsh	protein]	h	[glycine-cleavage	arbutin-6p	complex	l-glutamate
+l-glutamate	protein]	gaba	h	[glycine-cleavage	complex	gaba_ext	n6-lipoyl-l-lysine	l-glutamate_ext	trans-rxn-92
+ribose-1-phosphate	inosine	adenosine	xanthosine	guanosine	deoxy-d-ribose	vitamin	xanthosine_ext	adenine	1-phosphate
+trans-rxn-92	drug	drug_ext	l-glutamate	ketoglutarate	acrab	acrab_mrna	marrab_mrna	marrab	gaba
+csgdefg	csgdefg_mrna	phosphate	csga	rxn-5068	csga_ext	csge-csgg	flhdc_mrna	flhd-flhc	flhdc
+phosphate	gluconate	glyceraldehyde-p	xylulose-p	csgdefg_mrna	csgdefg	6-p	fructose-6-p	arbutin-6p	dhap
+vitamin	nitrite	fumarate	menaquinol	k2	aspartate	phosphate	oxygen	ribose-1-phosphate	gluconate
+phosphate	6-phosphate	acetyl-coa	beta-d-glucose-6-p	xylulose	gluconate	arbutin-6p	6-p	ribulose-5-p	xylulose-p
+gluconate	6-phosphate	arbutin-6p	salicin-6-p	beta-d-glucose-6-p	6-p	xylulose-p	bglg	bglgfb	bglgfb_mrna
+acpp	trans	hexadecenoyl-[acp]	malonyl-s-acp	acetyl-coa	ester	phosphate	coenzyme	fatty	beta-hydroxymyristoyl-[acp]
+oxygen	ketoglutarate	acid	flda	thioredoxin	vitamin	acpp	csgdefg_mrna	csgdefg	nitrite
+thioredoxin	udpg	udp-galactose	d-glucose	flda	1-phosphate	galactose-1-p	disulfide	amylose	acetyl-coa
+udpg	udp-galactose	thioredoxin	d-glucose	1-phosphate	oxygen	galactose-1-p	acetyl-coa	alanine	ketoglutarate
+gluconate	xylulose	ribulose-5-p	3-keto-l-gulonate	ribulose	5p	xylulose-p	kdgp	thioredoxin	lactaldehyde
+alanine	desulfurase]	persulfide	[l-cysteine	l-cysteine	cysteines	protein	unsulfurated	donor]	[sulfur
+thioredoxin	flda	flhd-flhc	flhdc_mrna	flhdc	rela-mazef_mrna	rela-mazef	mazf-maze	7,8-dihydrofolate	disulfide
+flhd-flhc	flhdc_mrna	flhdc	flhc	flhd	csgdefg_mrna	csgdefg	gltbdf_mrna	gltbdf	thioredoxin
+acetyl-coa	acpp	ketoglutarate	tdcabcdefg_mrna	tdcabcdefg	trans	coenzyme	hyaabcdef_mrna	hyaabcdef	hexadecenoyl-[acp]
+tdcabcdefg	tdcabcdefg_mrna	tdca	serine	serine_ext	dehydroalanine	propanoyl-p	tdce	threonine_ext	tdcd
+poly-beta-1,6-n-acetyl-d-glucosamine	n-deacetylated	partially	poly-beta-1,6-n-acetyl-d-glucosamine_ext	7,8-dihydrofolate	mazefg_mrna	mazefg	acetyl-coa	biodex	coenzyme
+relbe-hokd_mrna	relb-rele	relbe-hokd	relb	rele	hokd	7,8-dihydrofolate	yefm-yoeb	poly-beta-1,6-n-acetyl-d-glucosamine	yoeb-yefm
+poly-beta-1,6-n-acetyl-d-glucosamine	7,8-dihydrofolate	guanosine-diphosphate	mazefg_mrna	mazefg	n-deacetylated	partially	trna	poly-beta-1,6-n-acetyl-d-glucosamine_ext	glyceraldehyde-p
+zinc	zinc_ext	zint	poly-beta-1,6-n-acetyl-d-glucosamine	zint_mrna	acetyl-coa	n-deacetylated	partially	poly-beta-1,6-n-acetyl-d-glucosamine_ext	coenzyme
+yefm-yoeb	yefm-yoeb_mrna	yoeb-yefm	yefm	yoeb	zinc	zinc_ext	zint	poly-beta-1,6-n-acetyl-d-glucosamine	acetyl-coa
+poly-beta-1,6-n-acetyl-d-glucosamine	zinc	partially	n-deacetylated	acetyl-coa	poly-beta-1,6-n-acetyl-d-glucosamine_ext	zinc_ext	coenzyme	fmn	flda
+glyceraldehyde-p	dhap	1,6-diphosphate	tagatofuranose	phosphate	fructose-6-p	3-keto-l-gulonate	ribulose-5-p	tagaaldol-rxn	sedoheptulose-7-p
+biodex	lysine	ketoglutarate	1-_ext	cadba_mrna	cadba	thioredoxin	acid	lysine_ext	cadc
+dhap	fructose-6-p	lactaldehyde	rhasr	rhasr_mrna	rhamnose	rhar	xylulose-p	glyceraldehyde-p	rhas
+carbonate	methionine	oxygen	succinate	fumarate	aminoacrylate	glutamine	hyaabcdef_mrna	hyaabcdef	aspartate
+fructuronate	uidabc_mrna	uidabc	uxur	mannonate	hyaabcdef_mrna	hyaabcdef	uxuab_mrna	uxuab	appcbxa
+hyaabcdef_mrna	hyaabcdef	fructuronate	appcbxa_mrna	appcbxa	uidabc_mrna	uidabc	flda	uxur	methionine
+glycerate	tartronate-s-ald	ureidoglycolate	glyoxylate	allantoate	5-kdg	allantoin	alls	methionine	2-p-d-glycerate
+methionine	ketoglutarate	rela-mazef	rela-mazef_mrna	7,8-dihydrofolate	biodex	amylose	thioredoxin	hipb-hipa	lysine
+oxygen	methionine	ketoglutarate	2,3-dihydroxycinnamic	acetyl-coa	biodex	2,3-dhp	fmn	gaba	lysine
+7,8-dihydrofolate	amylose	rela-mazef_mrna	rela-mazef	trna	hipb-hipa	methylene-h4pteglu(n)	hipba	hipba_mrna	ppgpp
+fmn	flavin	amylose	sulfite	mononucleotide	sulfide	thioredoxin	d-glucose	flda	maltohexaose
+amylose	fmn	acid	flavin	d-glucose	1-phosphate	2,3-dihydroxycinnamic	carbonate	maltohexaose	fumarate
+fructose-6-p	1,6-diphosphate	tagatofuranose	rhasr	rhasr_mrna	rhar	rhamnose	fumarate	rhas	tagaaldol-rxn
+puta	flda	glutamate-semialdehyde	5-carboxylate	pyrroline	thioredoxin	proline	qsebc_mrna	qsebc	fumarate
+hyfabcdefghijr-focb_mrna	hyfabcdefghijr-focb	hydrogenase	hydrogen	electron	hyfg-hyfi-hyfa-hyfb-hyfc-hyfd-hyfe-hyff-hyfh	mvhmeth-rxn	3	aidb	vitamin
+carbonate	fumarate	puta	glutamate-semialdehyde	5-carboxylate	pyrroline	flda	succinate_ext	vitamin	malate
+flda	lactate	with	peptidoglycan	glycolate	sorbitol	lactate_ext	nascent	srlaebd-gutm-srlr-gutq	srlaebd-gutm-srlr-gutq_mrna
+ion	cobalt	nickel	nickel_ext	arsenite	nikabcder_mrna	nikabcder	melibiose	nikd-nike-nikb-nikc-nika	ion_ext
+aidb	carbonate	marrab_mrna	marrab	co2	hyfabcdefghijr-focb_mrna	hyfabcdefghijr-focb	aidb_mrna	dna	hydrogenase
+lactose	melibiose	marrab	marrab_mrna	lactose_ext	melibiose_ext	flda	sgrst-seta	sgrst-seta_mrna	lactate
+aidb	sorbitol	flda	srlaebd-gutm-srlr-gutq_mrna	srlaebd-gutm-srlr-gutq	tryptophan	carbonate	marrab_mrna	marrab	diacetylchitobiose
+tryptophan	indole	flda	serine	fructose-6-p	vitamin	chorismate	shikimate	shikimate-5-p	tryptophan_ext
+lactose	melibiose	marrab_mrna	marrab	lactose_ext	flda	lactate	melibiose_ext	sgrst-seta	sgrst-seta_mrna
+aicar	5\'-p-ribosylglycinamide	faicar	thf	polyglutamate	5-phosphoribosylamine	glycine	aidb	lactate	lactose
+aidb	lactate	lipid	glycolate	aicar	acetyl-coa	5\'-p-ribosylglycinamide	i	carbonate	faicar
+ribulose	dhap	1,6-diphosphate	tagatofuranose	glycoaldehyde	3-keto-l-gulonate	lactaldehyde	rhasr_mrna	rhasr	rhar
+ribulose	beta-neu5ac	n-acetylneuraminate	short-chain	nickel	alpha-neu5ac	3-keto-l-gulonate	fe+2	alcohol	lactate
+fructose-6-p	cu(i)	cu(i)_ext	carbonate	silver	alpha-d-mannose-6-p	silver_ext	trans-rxn-90	cuscfba_mrna	cuscfba
+aidb	(2s,3s)-2-methylcitrate	carbonate	cu(i)	nemra-gloa	nemra-gloa_mrna	propanoyl-coa	nemr	cu(i)_ext	tartrate
+fliaz-tcyj_mrna	fliaz-tcyj	flifghijk_mrna	flifghijk	aidb	flda	glyoxylate	vitamin	i-cit	coenzyme
+ureidoglycolate	allantoate	glycerate	glycerol-3-phosphate	lactate	arsenite	fliaz-tcyj	fliaz-tcyj_mrna	fe+2	flifghijk_mrna
+3-keto-l-gulonate	5p	7	p-enol-pyruvate	aidb	carbonate	tartrate	ureidoglycolate	ribulose	dhap
+ureidoglycolate	hyacinthin	allantoate	glycerate	phenylacetate	flda	acetyl-coa	5-kdg	coenzyme	allantoin
+fe+2	mn(ii)	flda	mn(ii)_ext	3-keto-l-gulonate	ftsq	acetyl-coa	hns	beta-neu5ac	5p
+tartrate	mn(ii)	hyacinthin	arsenite	fe+2	nemra-gloa	nemra-gloa_mrna	nemr	(2s,3s)-2-methylcitrate	mn(ii)_ext
+arsenite	glycerol-3-phosphate	hyacinthin	tartrate	melibiose	alanine	sgrst-seta	sgrst-seta_mrna	rcho	alcohol
+hyacinthin	tartrate	glycerol-3-phosphate	arsenite	phenylacetate	aspartate	mn(ii)	2,3-dihydroxycinnamic	fe+2	rpos
+uidabc	uidabc_mrna	hyacinthin	exut	ftsq	tartrate	ureidoglycolate	rpos	i-cit	lyase
+hyacinthin	melibiose	betaine	glycerol-3-phosphate	sgrst-seta_mrna	sgrst-seta	choline	melibiose_ext	mn(ii)	lactate
+rpos	rpos_mrna	rpob-rpoc-rpoa-rpos	hns	dna	dinj-yafq	hns_mrna	ureidoglycolate	double	hyacinthin
+ftsq	ftsq-ftsb-ftsl	rna	tartrate	dinj-yafq	norr	gadw	lactate	norvw_mrna	norvw
+norr	norvw	norvw_mrna	hyacinthin	ureidoglycolate	dinj-yafq	rna	norr_mrna	flrd	betaine
+ftsq	dinj-yafq	ftsq-ftsb-ftsl	gadw	yafq-dinj	dinj-yafq_mrna	rna	ftsz	ftsa	gadw_mrna
+lysa	rna	lysa_mrna	dinj-yafq	yafq-dinj	dinj-yafq_mrna	rpos	yafq	dinj	hns
+bola	rcho	alcohol	rna	lysa	arsenite	poly-beta-1,6-n-acetyl-d-glucosamine	lysa_mrna	rpos	melibiose
+maly	bola	ftsq	lysa	rna	rcho	nemra-gloa_mrna	nemra-gloa	nemr	ftsq-ftsb-ftsl
+rna	lysa	rcho	alcohol	lysa_mrna	bola	rpos	hns	dinj-yafq	guanylate
+rcho	lysa	alcohol	betaine	lysa_mrna	choline	rna	aldehyde	nemr	nemra-gloa
+rcho	alcohol	arsenite	rna	hns	betaine	rpos	choline	aldehyde	dna
+hns	dna	lysa	rpos	hns_mrna	double	aidb	rcho	betaine	stranded
+tartrate	betaine	hyacinthin	nemr	nemra-gloa_mrna	nemra-gloa	choline	norr	aidb	aldehyde
+uidabc	uidabc_mrna	arsenite	melibiose	hyacinthin	sgrst-seta	sgrst-seta_mrna	dinj-yafq	7	uxur
+tartrate	hyacinthin	serine	dsdc	(2s,3s)-2-methylcitrate	propanoyl-coa	aspartate	acetyl-coa	melibiose	succinate_ext
+serine	dsdc	mn(ii)	arsenite	serine_ext	mn(ii)_ext	mdtabcd-baesr	mdtabcd-baesr_mrna	dehydroalanine	uidabc
+mn(ii)	mdtabcd-baesr_mrna	mdtabcd-baesr	mn(ii)_ext	tartrate	fe+2	dps	mntp	mannitol-1-p	marrab
+arsenite	moaabcde_mrna	moaabcde	cpmp	fe+2	mn(ii)	synthase	small	molybdopterin	citcdefxg_mrna
+serine	dsdc	vitamin	tartrate	serine_ext	(2s,3s)-2-methylcitrate	mn(ii)	propanoyl-coa	fe+2	methylisocitrate
+mannitol-1-p	mtladr	mtladr_mrna	6-phosphate	mtlr	alpha-d-mannose-6-p	moaabcde_mrna	moaabcde	cpmp	mannitol_ext
+pimelyl-[acp]	melibiose	ester	arsenite	alanine	malonyl-s-acp	mdtabcd-baesr_mrna	mdtabcd-baesr	methyl	dinj-yafq
+glycerol-3-phosphate	arsenite	vitamin	mannitol-1-p	mdtabcd-baesr	mdtabcd-baesr_mrna	mtladr_mrna	mtladr	gltbdf_mrna	gltbdf
+alanine	vitamin	dinj-yafq	lipid	aspartate	tyrosine	flda	i	citcdefxg_mrna	citcdefxg
+aspartate	soxr	glycerol-3-phosphate	fumc	fumhydr-rxn	fumac_mrna	fumac	soxs	thf	polyglutamate
+qsebc	qsebc_mrna	gltbdf_mrna	gltbdf	glycerol-3-phosphate	qseb	gltd-gltb	aspartate	puta	ftsq
+pimelyl-[acp]	ester	methyl	co2	ferredoxin	[2fe-2s]	vitamin	flda	gltbdf_mrna	gltbdf
+glrr	glycerol-3-phosphate	lactaldehyde	ribulose	glycoaldehyde	xylopyranose	xylab_mrna	xylab	aspartate	tyrosine
+arsenite	aspartate	glycerol-3-phosphate	short-chain	rcho	thf	polyglutamate	p-enol-pyruvate	n5-methyl-tetrahydrofolate	hyacinthin
+mdtabcd-baesr	mdtabcd-baesr_mrna	malonyl-coa	vitamin	glrr	acetyl-coa-carboxyltransfer-rxn	accd-acca-accc-accb	accbc_mrna	accbc	accb
+glrr	vitamin	aspartate	alanine	short-chain	(2s,3s)-2-methylcitrate	arsenite	thf	polyglutamate	soxr
+glrr	putrescine_ext	putrescine	5-phosphate	gaba	vitamin	glycerol-3-phosphate	tyrosine	phosphate	acetyl-coa
+p-enol-pyruvate	glrr	ribulose	7	2	lactaldehyde	vitamin	tyrosine	glycoaldehyde	beta-neu5ac
+diacetylchitobiose	beta-d-cellobiose-6\'-p	ptsh	lipid	phosphorylated_ext	hpr	i	isocitrate-dehydrogenase	6\'-phosphate	6-phosphate
+putrescine_ext	glrr	putrescine	n2-succinylornithine	alanine	n2-succinylarginine	arginine	gaba	2-acetamido-5-oxopentanoate	tyrosine
+alanine	lactose	vitamin	tyrosine	qsebc	qsebc_mrna	aminoacrylate	melibiose	pimelyl-[acp]	d-glucose
+alanine	pimelyl-[acp]	lactose	melibiose	ester	putrescine_ext	putrescine	aminoacrylate	tyrosine	qsebc_mrna
+nitrate_ext	vitamin	narghji	narghji_mrna	tyrosine	menaquinol_ext	te0	narg-narh-nari	rxn0-7124	rxn-15119
+kdgp	eda	4-hydroxy-2-oxoglutarate	5-ketogluconate	edd-eda_mrna	edd-eda	glyceraldehyde-p	idonate	6-p	sedoheptulose-7-p
+d-glucose	succinate	aminoacrylate	n2-succinylornithine	ketoglutarate	amylose	tyrosine	succ-s-ald	aidb	n2-succinylarginine
+lactate	glcdefgba	glcdefgba_mrna	glycolate	lactate_ext	5-kdg	vitamin	kdgp	isocitrate-dehydrogenase	6-phosphate
+cobalt	nikabcder	nikabcder_mrna	nikd-nike-nikb-nikc-nika	abc-20-rxn	ion	arsenite	rcnab	rcnab_mrna	malonyl-s-acp
+putrescine_ext	putrescine	cobalt	carbonate	malonyl-s-acp	fatty	malonyl-coa	carbamate	tyrosine	carbamoyl-p
+carbonate	carbamate	putrescine_ext	cobalt	putrescine	alanine	carbamoyl-p	glutamine	malonyl-coa	pimelyl-[acp]
+6-phosphate	beta-d-cellobiose-6\'-p	salicin-6-p	prpr	glycerate	glucose-6-p	amylose	lactose	beta-d-cellobiose_ext	arbutin-6p
+lactose	sgrst-seta	sgrst-seta_mrna	melibiose	cobalt	alanine	glucopyranose	beta-d-cellobiose-6\'-p	lactose_ext	nikabcder
+malonyl-s-acp	5-phosphate	fatty	alpha-d-mannose-6-p	beta-d-glucose-6-p	co2	ribulose-5p	ribose-5p	ester	chorismate
+amylose	lactose	d-glucose	alpha-glucose	1-phosphate	succinate	6-phosphate	beta-d-cellobiose-6\'-p	maltohexaose	aspartate
+tyrosine	amylose	maltohexaose	aminoacrylate	qsebc_mrna	qsebc	flifghijk	flifghijk_mrna	d-glucose	alpha-glucose
+alpha-d-mannose-6-p	ribulose-5p	ribose-5p	beta-d-glucose-6-p	5-phosphate	malonyl-s-acp	phenylacetate	suc-coa	hyacinthin	fatty
+aspartate	tyrosine	alpha-d-mannose-6-p	5-phosphate	tartrate	hydrogenase	fumarate	oxygen	ribulose-5p	acetyl-coa
+hydrogenase	5-phosphate	3	tyrosine	hyfabcdefghijr-focb	hyfabcdefghijr-focb_mrna	mvhmeth-rxn	hyfg-hyfi-hyfa-hyfb-hyfc-hyfd-hyfe-hyff-hyfh	electron	formate
+6-phosphate	diacetylchitobiose	5-phosphate	hydrogenase	sorbitol	n-monoacetylchitobiose	trer	alpha-d-glucosamine	6\'-phosphate	chitobiose_ext
+5-phosphate	hydrogenase	flic	flifghijk	flifghijk_mrna	6-phosphate	fliaz-tcyj_mrna	fliaz-tcyj	gade-mdtef_mrna	gade-mdtef
+5-phosphate	aspartate	phenylacetate	suc-coa	coenzyme	alpha-d-mannose-6-p	succinate	6-phosphate	vitamin	hyacinthin
+5-phosphate	flic	acetyl-coa	csgbac_mrna	csgbac	aspartate	fliaz-tcyj_mrna	fliaz-tcyj	flifghijk	flifghijk_mrna
+glycerate	ptsh	dehydrogenase	e2	[pyruvate	h	[glycine-cleavage	5-kdg	6-phosphate	complex
+-------------------------------------------------